helper scripts

print_fields_from_vcf.py

@@ -14,7 +14,7 @@ def vcfelements(line): # parse the main, tab-delimited elements of the VCF line
    if len(vcf_elements)>9: # check if genotype fields present; this requires at least 2 additional columns
       vcf_elements=list_genotypes(vcf_elements)
    else :
-      vcf_elements.append([])  # make sure that the data structure is allways of lenth 9
+      vcf_elements.append([])  # make sure that the data structure is allways of length 9
    return vcf_elements # return list
 
 def list_genotypes(vcflist): # reshape the genotypes to a single list