Update to conda environments
This merge request changes the following:
- Split
conda.yaml
inconda_linux.yml
andconda_macos.yml
. The reason for this is that having BUSCO v5.2.2 as a dependency does not work on macOS. - Add ASTER v1.3 as dependency to conda instead of having it as a submodule. Also update error messages in the code accordingly.
Still to do (can be done during review process):
-
Update all documentation that has to do with the conda.yaml
file, BUSCO and ASTER. -
Add message to functions that call busco
that one cannot run this on macOS. -
Fully remove git submodule. Since this can be quite messy, I would like to do this as the last step in this merge request. The necessary steps are: git submodule deinit -f ASTER
;rm -rf .git/modules/ASTER
;git rm -f ASTER
. -
Update CHANGELOG.md
Edited by Workum, Dirk-Jan van