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Update developer documentation

Workum, Dirk-Jan van requested to merge update_developer_documentation into develop

Some updates to the developer documentation and other tools that we need:

  • added section about end-to-end pipeline
  • added reminder to install python 3.7 because of differences in pre-commit and to make sure the same version for sphinx is installed with pip
  • fixing the documentation to work with the newest version of sphinx-lint
  • deleted replace_print.py as it is no longer needed
Edited by Workum, Dirk-Jan van

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