Merge release 4.2.0 into pantools_v4
- Added variation functions
add_variants
,add_pavs
,remove_variants
,remove_pavs
andvariation_overview
- VCF information can be used for
msa
,core_phylogeny
andconsensus_tree
- PAV information can be used for
gene_classification
,pangenome_structure
,msa
,core_phylogeny
andconsensus_tree
-
add_annotations
now validates all data before adding it to the graph -
msa
can provide output data for all phenotypes instead of just one.