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Merge release 4.2.0 into pantools_v4

Robin van Esch requested to merge release_v4.2.0 into pantools_v4
  • Added variation functions add_variants, add_pavs,remove_variants, remove_pavs and variation_overview
  • VCF information can be used for msa, core_phylogeny and consensus_tree
  • PAV information can be used for gene_classification, pangenome_structure, msa, core_phylogeny and consensus_tree
  • add_annotations now validates all data before adding it to the graph
  • msa can provide output data for all phenotypes instead of just one.

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