Merge requests · bioinformatics / PanTools

Add locations to function nodes in graph

!245 · created Nov 01, 2024 by Workum, Dirk-Jan van develop
- Merged
- 2
- Approved
updated Nov 01, 2024
Check if MCScanX was installed

!244 · created Oct 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Oct 16, 2024
Fix kmc command for add_genomes

!243 · created Sep 13, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Sep 24, 2024
Fix add_functions in panproteome

!242 · created Sep 10, 2024 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Oct 16, 2024
Fix redirecting stdout for tblastx and tblastn

!241 · created Sep 09, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Sep 24, 2024
Update missing parts in documentation

!240 · created Aug 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Aug 15, 2024
Merge back large change to add_gfa_build_pangenome 3 of 6 checklist items completed

!239 · created Aug 07, 2024 by Workum, Dirk-Jan van add_gfa_build_pangenome
- Merged
- 3
updated Aug 12, 2024
Improving kmer index I/O speed by reading into memory

!238 · created Jul 16, 2024 by Workum, Dirk-Jan van add_gfa_export
- Merged
- 1
- Approved
updated Jul 17, 2024
Draft: Create full pangenome JSON for GeneSet Explorer

!237 · created Jun 28, 2024 by Workum, Dirk-Jan van add_gfa_export
- Closed
- 1
updated Aug 12, 2024
Replace most print statements with equivalent log calls

!236 · created Jun 25, 2024 by Draisma, Arjan develop
- Merged
- 76
- Approved
updated Aug 06, 2024
Draft: Fix kmer pangenome structure

!235 · created Jun 20, 2024 by Workum, Dirk-Jan van develop
updated Jun 26, 2024
Update location SFTP server

!234 · created Jun 18, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jun 18, 2024
Draft: fix integer overflowing with kmer analyses 0 of 2 checklist items completed

!233 · created Jun 17, 2024 by Workum, Dirk-Jan van develop
updated Jun 17, 2024
Bugfix tabs in fasta header

!232 · created May 29, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 29, 2024
Update CONTRIBUTING.md to reflect current situation

!231 · created May 23, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 23, 2024
Fix license PanTools

!230 · created May 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated May 15, 2024
added exception with error message to transaction in alleleStatistics.

!229 · created Apr 29, 2024 by Robin van Esch develop
- Merged
- Approved
updated Apr 29, 2024
Draft: Update tutorial

!228 · created Apr 29, 2024 by Robin van Esch develop
- 27
updated Sep 27, 2024
Fix CI/CD mafft conda install conflict

!227 · created Apr 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Apr 15, 2024
Phased pangenomics bugfix

!226 · created Apr 09, 2024 by Robin van Esch develop
- Merged
- 6
- Approved
updated Apr 29, 2024