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Updated date
Update conda environments
!135
· created
Feb 17, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Feb 23, 2023
fixing linking of mRNA node from non-standard GFF with functional annotation
!136
· created
Feb 23, 2023
by
Pardeshi, Lakhansing
develop
Merged
Approved
3
updated
Feb 24, 2023
Fix backwards compatibility MSA
!134
· created
Feb 16, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
5
updated
Mar 14, 2023
Reduce logging build pangenome
!138
· created
Mar 03, 2023
by
Robin van Esch
develop
Merged
Approved
0
updated
Mar 15, 2023
Fix maven compile warnings
!140
· created
Mar 14, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Mar 16, 2023
refactored add_variants, add_pav, remove_variants, remove_pav and variation_overview
6 of 6 checklist items completed
!141
· created
Mar 14, 2023
by
Robin van Esch
include_variation
enhancement
Merged
Approved
49
updated
Mar 17, 2023
Moved from general constraint validators for msa to a specific msa validator
!143
· created
Mar 20, 2023
by
Robin van Esch
fix_msa_alignment_type
Merged
Approved
7
updated
Mar 23, 2023
Updated CLI for new functions.
!146
· created
Mar 23, 2023
by
Robin van Esch
phased_pangenomics
Merged
0
updated
Mar 25, 2023
Move graph and bean validation to utils
!144
· created
Mar 21, 2023
by
Robin van Esch
include_variation
Merged
Approved
9
updated
Mar 30, 2023
Add variation (SNPs, InDels and PAVs) to PanTools
7 of 7 checklist items completed
!128
· created
Jan 30, 2023
by
Workum, Dirk-Jan van
develop
Merged
53
updated
Mar 30, 2023
Added `Pantools.logger` instead of `System.out.print*`
!149
· created
Mar 30, 2023
by
Ahmed, Nauman
develop
enhancement
Merged
Approved
0
updated
Apr 03, 2023
Reformatted AnnotationLayer.addAnnotations
!133
· created
Feb 13, 2023
by
Robin van Esch
develop
Merged
30
updated
Apr 25, 2023
Fix filenames msa & core_phylogeny
!151
· created
Apr 25, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
Apr 28, 2023
Fix "no such property, 'protein_ID'" for `pantools add_variants`
!152
· created
Apr 28, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
1
updated
May 04, 2023
Updated version number for new release 4.2.0
!153
· created
May 04, 2023
by
Robin van Esch
develop
Merged
Approved
0
updated
May 08, 2023
Merge release 4.2.0 into pantools_v4
!154
· created
May 04, 2023
by
Robin van Esch
Merged
Approved
0
updated
May 08, 2023
Fix readthedocs.io documentation build
!155
· created
May 08, 2023
by
Workum, Dirk-Jan van
Merged
Approved
0
updated
May 08, 2023
Changes from v4.2.0 to develop
!156
· created
May 08, 2023
by
Workum, Dirk-Jan van
develop
Merged
0
updated
May 08, 2023
Add check whether bcftools and tabix exist before running add_variants
!159
· created
May 08, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
May 22, 2023
Fix protein specific FastTree option
!157
· created
May 08, 2023
by
Workum, Dirk-Jan van
develop
Merged
Approved
0
updated
May 22, 2023
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