Merge requests · bioinformatics / PanTools · GitLab

Merge v4.1.1 to develop

!125 · created Jan 27, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jan 27, 2023
Fix NullPointerException in `remove_grouping`

!124 · created Jan 27, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jan 27, 2023
storing scoring matrices as resource files

!123 · created Jan 26, 2023 by Robin van Esch develop
- Merged
- 8
- Approved
updated Jan 27, 2023
Replace print statements by log4j logging for SequenceDatabase, SequenceScanner, BoundedLocalSequenceAlignment and LocalSequenceAlignment

!122 · created Jan 25, 2023 by Workum, Dirk-Jan van develop
- Merged
- 5
- Approved
updated Feb 03, 2023
Fix functional databases version table in documentation

!121 · created Jan 20, 2023 by Workum, Dirk-Jan van develop
- Merged
- 2
- Approved
updated Jan 24, 2023
Add PanTools workflows to read the docs

!120 · created Jan 20, 2023 by Workum, Dirk-Jan van develop
- Merged
- 10
- Approved
updated Jan 27, 2023
Remove existence of ASTER from .idea folder

!119 · created Jan 13, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jan 18, 2023
Fix the 'alt_id' property of GO function nodes

!118 · created Jan 10, 2023 by Workum, Dirk-Jan van develop
- Merged
- 4
- Approved
updated Jan 10, 2023
Fix hardcoded pantools target dir 4 of 4 checklist items completed

!117 · created Jan 09, 2023 by Workum, Dirk-Jan van develop
- Merged
- 32
- Approved
updated Jan 18, 2023
Add sphinx-lint to CI/CD pipeline

!116 · created Jan 04, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jan 04, 2023
Add badges to README

!115 · created Jan 04, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jun 02, 2023
release v4.1.0 including optimized construction

!114 · created Dec 23, 2022 by Robin van Esch
- Merged
- Approved
updated Dec 23, 2022
Updated version number, changelog and final bugfixes

!113 · created Dec 23, 2022 by Robin van Esch develop
- Merged
- Approved
updated Dec 23, 2022
Add sphinx lint to pre commit hooks 1 of 1 checklist item completed

!112 · created Dec 23, 2022 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Jan 04, 2023
Fix binning in add_phenotypes

!111 · created Dec 23, 2022 by Jonkheer, Eef develop
- Merged
- 15
- 1
- Approved
updated Dec 23, 2022
fix -H/-G input parameters for group_info

!110 · created Dec 22, 2022 by Workum, Dirk-Jan van develop
- Merged
- 15
- Approved
updated Dec 23, 2022
Make proper log4j statements in Globals.java and Utils.java

!109 · created Dec 21, 2022 by Workum, Dirk-Jan van develop
- Merged
- 16
- Approved
updated Dec 23, 2022
Add CI validation for build_pangenome and map_reads

!108 · created Dec 21, 2022 by Moed, Matthijs develop
- Merged
- 11
- Approved
updated Dec 22, 2022
remove CI/CD jar artefact creation upon tag

!107 · created Dec 21, 2022 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 21, 2022
Some bug fixes and final changes for release in 4.0.0

!106 · created Dec 21, 2022 by Robin van Esch develop
- Merged
- Approved
updated Dec 21, 2022

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