Merge requests · bioinformatics / PanTools

Fix CI/CD mafft conda install conflict

!227 · created Apr 15, 2024 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Apr 15, 2024
Remove software requirements from index page; changed useful JVM options

!220 · created Dec 14, 2023 by Robin van Esch develop
- Merged
- 4
- Approved
updated Dec 14, 2023
release v4.3.1

!218 · created Dec 08, 2023 by Robin van Esch
- Merged
- Approved
updated Dec 08, 2023
update release version

!219 · created Dec 08, 2023 by Robin van Esch develop
- Merged
- Approved
updated Dec 08, 2023
Update reference commit

!217 · created Dec 05, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 07, 2023
Improvement and debugging of pangenome_structure speed 2 of 2 checklist items completed

!216 · created Nov 28, 2023 by Workum, Dirk-Jan van develop
- Merged
- 12
- Approved
updated Dec 05, 2023
Fix var inf csv file

!212 · created Nov 24, 2023 by Workum, Dirk-Jan van
- Merged
- Approved
updated Nov 28, 2023
do merge request !212 again

!215 · created Nov 28, 2023 by Workum, Dirk-Jan van develop
updated Nov 28, 2023
Revert "Merge branch 'fix_var_inf_csv_file' into 'pantools_v4'"

!214 · created Nov 28, 2023 by Workum, Dirk-Jan van
updated Nov 28, 2023
Bioconda install update

!213 · created Nov 27, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Nov 27, 2023
Msa var inf positions optimalization

!202 · created Nov 16, 2023 by Robin van Esch develop
- Merged
- 5
- Approved
updated Nov 24, 2023
Add test to CI/CD for pantools --version and pantools --help

!211 · created Nov 23, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Nov 23, 2023
update develop with hotfix

!210 · created Nov 23, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Nov 23, 2023
Replaced all remaining occurrences of move_grouping to deactivate_grouping.

!209 · created Nov 23, 2023 by Robin van Esch
- Merged
- Approved
updated Nov 23, 2023
merge Release v4.3.0 back to develop

!208 · created Nov 23, 2023 by Robin van Esch develop
- Merged
- Approved
updated Nov 23, 2023
Add phasing functionalities and variation to pantools v4

!207 · created Nov 23, 2023 by Robin van Esch
- Merged
- Approved
updated Nov 23, 2023
Documentation shuffle

!201 · created Nov 14, 2023 by Robin van Esch develop
- Merged
- 51
- Approved
updated Nov 23, 2023
update reference version for ci pipeline

!204 · created Nov 21, 2023 by Robin van Esch develop
- Merged
- 1
- Approved
updated Nov 21, 2023
Fix phenotype overview order

!206 · created Nov 21, 2023 by Robin van Esch develop
updated Nov 21, 2023
Fix `--seed` for `pantools pangenome_structure`

!205 · created Nov 21, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Nov 21, 2023