Merge requests · bioinformatics / PanTools

Update to conda environments 4 of 4 checklist items completed

!77 · created Oct 10, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Jan 13, 2023
Fix the 'alt_id' property of GO function nodes

!118 · created Jan 10, 2023 by Workum, Dirk-Jan van develop
- Merged
- 4
- Approved
updated Jan 10, 2023
Add --read-group option

!102 · created Dec 13, 2022 by Ahmed, Nauman develop
enhancement
- Merged
- 17
- Approved
updated Jan 09, 2023
Add sphinx-lint to CI/CD pipeline

!116 · created Jan 04, 2023 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Jan 04, 2023
Add sphinx lint to pre commit hooks 1 of 1 checklist item completed

!112 · created Dec 23, 2022 by Workum, Dirk-Jan van develop
- Merged
- 1
- Approved
updated Jan 04, 2023
release v4.1.0 including optimized construction

!114 · created Dec 23, 2022 by Robin van Esch
- Merged
- Approved
updated Dec 23, 2022
Updated version number, changelog and final bugfixes

!113 · created Dec 23, 2022 by Robin van Esch develop
- Merged
- Approved
updated Dec 23, 2022
Make proper log4j statements in Globals.java and Utils.java

!109 · created Dec 21, 2022 by Workum, Dirk-Jan van develop
- Merged
- 16
- Approved
updated Dec 23, 2022
Fix binning in add_phenotypes

!111 · created Dec 23, 2022 by Jonkheer, Eef develop
- Merged
- 15
- 1
- Approved
updated Dec 23, 2022
fix -H/-G input parameters for group_info

!110 · created Dec 22, 2022 by Workum, Dirk-Jan van develop
- Merged
- 15
- Approved
updated Dec 23, 2022
Add CI validation for build_pangenome and map_reads

!108 · created Dec 21, 2022 by Moed, Matthijs develop
- Merged
- 11
- Approved
updated Dec 22, 2022
Nodes in neo4j are long instead of int

!103 · created Dec 14, 2022 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 22, 2022
remove CI/CD jar artefact creation upon tag

!107 · created Dec 21, 2022 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 21, 2022
Some bug fixes and final changes for release in 4.0.0

!106 · created Dec 21, 2022 by Robin van Esch develop
- Merged
- Approved
updated Dec 21, 2022
Make the debug logging level for `add_annotations` less verbose

!101 · created Dec 06, 2022 by Workum, Dirk-Jan van develop
- Merged
- 7
- Approved
updated Dec 09, 2022
Update CHANGELOG.md by adding information from last merge request

!100 · created Dec 02, 2022 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 02, 2022
Optimized localization

!95 · created Nov 15, 2022 by Moed, Matthijs develop
- Merged
- 8
- Approved
updated Dec 02, 2022
Merge v4.0.0 bugfixes into develop branch

!99 · created Dec 01, 2022 by Workum, Dirk-Jan van develop
- Merged
- Approved
updated Dec 02, 2022
Release v3.4.0

!98 · created Dec 01, 2022 by Workum, Dirk-Jan van pantools_v3
- Merged
- Approved
updated Dec 01, 2022
split CHANGELOG in Unreleased and v3.5

!96 · created Nov 16, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Nov 16, 2022