Merge requests · bioinformatics / PanTools · GitLab

Fix phase information of CDS nodes for translation of mRNA to protein

!46 · created Jun 30, 2022 by Workum, Dirk-Jan van master
- Merged
- 1
- Approved
updated Jul 14, 2022
Update README.md

!49 · created Jul 05, 2022 by Jonkheer, Eef master
updated Jul 05, 2022
Fixed incorrect naming in header of 'kmer_classification_overview.csv'

!45 · created Jun 24, 2022 by Jonkheer, Eef master
- Merged
- Approved
updated Jun 24, 2022
replace manual gff parsing by htsjdk gff parsing for add_annotations 6 of 6 checklist items completed

!38 · created Mar 29, 2022 by Workum, Dirk-Jan van master
- Merged
- 1
- 1
- Approved
updated Jun 21, 2022
Bugfix locate jar

!44 · created Jun 21, 2022 by Workum, Dirk-Jan van master
- Merged
- 1
- 1
updated Jun 21, 2022
Update CHANGELOG.md

!42 · created May 19, 2022 by Jonkheer, Eef master
updated May 19, 2022
Add CI pipeline

!41 · created May 13, 2022 by Moed, Matthijs master
- Merged
- Approved
updated May 13, 2022
Colourblind friendly plots

!40 · created May 04, 2022 by Jonkheer, Eef master
- Merged
updated May 04, 2022
removing identifiers_incorrect_for_fasttree and uniquifying all sequences that are input for MSA

!39 · created Apr 05, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Apr 06, 2022
make ignoring of polytomies default for ASTRAL-PRO

!37 · created Mar 28, 2022 by Workum, Dirk-Jan van master
- Merged
- 1
- Approved
updated Mar 29, 2022
High freq kmer classification

!36 · created Mar 25, 2022 by Jonkheer, Eef master
- Merged
- Approved
updated Mar 25, 2022
let core_snp_tree search for alignment with updated msaNames variable instead...

!35 · created Mar 14, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Mar 18, 2022
small improvement to running fasttree

!34 · created Mar 09, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Mar 09, 2022
Delete NetBeans-specific files and directories. Close #9.

!33 · created Feb 24, 2022 by Moed, Matthijs master
- Merged
- Approved
updated Feb 25, 2022
Rollback annotation when annotation unsuccessful

!32 · created Feb 22, 2022 by Jonkheer, Eef master
- Merged
- Approved
updated Feb 22, 2022
Hotfix msa protein alignment trees

!31 · created Feb 18, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Feb 18, 2022
Include version and commit ID

!29 · created Feb 16, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Feb 18, 2022
Reorganise all MSA functionalities in a novel class

!28 · created Feb 14, 2022 by Workum, Dirk-Jan van master
- Merged
- Approved
updated Feb 18, 2022
Add pre-commit hooks

!27 · created Feb 11, 2022 by Moed, Matthijs master
- Merged
- Approved
updated Feb 18, 2022
Add Maven enforcer plugin to validate JDK and Maven versions.

!26 · created Feb 11, 2022 by Moed, Matthijs master
- Merged
updated Feb 18, 2022

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