diff --git a/README.md b/README.md
index d33ea47b53c7a7e5c7ce323e9cf19f6d204f5680..df917966856946003f16bcc5ce3ce88d224eb31d 100644
--- a/README.md
+++ b/README.md
@@ -1 +1,3 @@
-SiB-Auto
+This repository contains SiB4 scripts, preprocessing pipelines and templates for reading into Python for easy modification.
+
+Use in combination with the preprocessing pipeline in CTDAS/CTDAS.git
diff --git a/mpi/SiB4D b/mpi/SiB4D
new file mode 100755
index 0000000000000000000000000000000000000000..624ff663e8ce223fd3c3a89926fcd64017dc49dc
Binary files /dev/null and b/mpi/SiB4D differ
diff --git a/mpi/chmod_144 b/mpi/chmod_144
new file mode 100755
index 0000000000000000000000000000000000000000..5db58ca7353c228982ee724b158820f6a18e5ab3
--- /dev/null
+++ b/mpi/chmod_144
@@ -0,0 +1,8 @@
+chmod +x rename_namel_144
+chmod +x dir_make_144
+chmod +x dir_remove_144
+chmod +x ex_time_144
+chmod +x make_ex_dir_144
+chmod +x script_qsub.csh_144
+chmod +x sibcasa_script_144
+chmod +x script_cp_to_JET_ex_144
diff --git a/mpi/dir_files.py b/mpi/dir_files.py
new file mode 100644
index 0000000000000000000000000000000000000000..ec0f518237ab01985b5691d508dffa44527579ab
--- /dev/null
+++ b/mpi/dir_files.py
@@ -0,0 +1,17 @@
+'''
+show files in directory
+'''
+# Load libraries
+import glob
+
+import os
+import shutil
+import numpy as np
+
+dir = '/scratch/shared/kooij032/NRT/output_sib4_NRT_final/'
+
+# Load all files in directory
+flist = sorted(glob.glob(dir+'/*'))
+
+# Show file list
+print(flist)
diff --git a/mpi/dir_make_144 b/mpi/dir_make_144
new file mode 100755
index 0000000000000000000000000000000000000000..bb744f7e30acd7fbc4503d4d9419cb6bb8e93449
--- /dev/null
+++ b/mpi/dir_make_144
@@ -0,0 +1,147 @@
+rm -r /scratch/p274780/output_global_final2/global_*
+mkdir /scratch/p274780/output_global_final2/
+cd /scratch/p274780/output_global_final2/
+mkdir global_001
+mkdir global_002
+mkdir global_003
+mkdir global_004
+mkdir global_005
+mkdir global_006
+mkdir global_007
+mkdir global_008
+mkdir global_009
+mkdir global_010
+mkdir global_011
+mkdir global_012
+mkdir global_013
+mkdir global_014
+mkdir global_015
+mkdir global_016
+mkdir global_017
+mkdir global_018
+mkdir global_019
+mkdir global_020
+mkdir global_021
+mkdir global_022
+mkdir global_023
+mkdir global_024
+mkdir global_025
+mkdir global_026
+mkdir global_027
+mkdir global_028
+mkdir global_029
+mkdir global_030
+mkdir global_031
+mkdir global_032
+mkdir global_033
+mkdir global_034
+mkdir global_035
+mkdir global_036
+mkdir global_037
+mkdir global_038
+mkdir global_039
+mkdir global_040
+mkdir global_041
+mkdir global_042
+mkdir global_043
+mkdir global_044
+mkdir global_045
+mkdir global_046
+mkdir global_047
+mkdir global_048
+mkdir global_049
+mkdir global_050
+mkdir global_051
+mkdir global_052
+mkdir global_053
+mkdir global_054
+mkdir global_055
+mkdir global_056
+mkdir global_057
+mkdir global_058
+mkdir global_059
+mkdir global_060
+mkdir global_061
+mkdir global_062
+mkdir global_063
+mkdir global_064
+mkdir global_065
+mkdir global_066
+mkdir global_067
+mkdir global_068
+mkdir global_069
+mkdir global_070
+mkdir global_071
+mkdir global_072
+mkdir global_073
+mkdir global_074
+mkdir global_075
+mkdir global_076
+mkdir global_077
+mkdir global_078
+mkdir global_079
+mkdir global_080
+mkdir global_081
+mkdir global_082
+mkdir global_083
+mkdir global_084
+mkdir global_085
+mkdir global_086
+mkdir global_087
+mkdir global_088
+mkdir global_089
+mkdir global_090
+mkdir global_091
+mkdir global_092
+mkdir global_093
+mkdir global_094
+mkdir global_095
+mkdir global_096
+mkdir global_097
+mkdir global_098
+mkdir global_099
+mkdir global_100
+mkdir global_101
+mkdir global_102
+mkdir global_103
+mkdir global_104
+mkdir global_105
+mkdir global_106
+mkdir global_107
+mkdir global_108
+mkdir global_109
+mkdir global_110
+mkdir global_111
+mkdir global_112
+mkdir global_113
+mkdir global_114
+mkdir global_115
+mkdir global_116
+mkdir global_117
+mkdir global_118
+mkdir global_119
+mkdir global_120
+mkdir global_121
+mkdir global_122
+mkdir global_123
+mkdir global_124
+mkdir global_125
+mkdir global_126
+mkdir global_127
+mkdir global_128
+mkdir global_129
+mkdir global_130
+mkdir global_131
+mkdir global_132
+mkdir global_133
+mkdir global_134
+mkdir global_135
+mkdir global_136
+mkdir global_137
+mkdir global_138
+mkdir global_139
+mkdir global_140
+mkdir global_141
+mkdir global_142
+mkdir global_143
+mkdir global_144
diff --git a/mpi/dir_remove_144 b/mpi/dir_remove_144
new file mode 100755
index 0000000000000000000000000000000000000000..55cb662ebe24d663b892d98ff8e5485223ecdd0f
--- /dev/null
+++ b/mpi/dir_remove_144
@@ -0,0 +1,144 @@
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_001
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_002
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_003
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_004
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_005
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_006
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_007
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_008
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_009
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_010
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_011
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_012
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_013
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_014
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_015
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_016
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_017
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_018
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_019
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_020
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_021
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_022
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_023
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_024
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_025
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_026
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_027
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_028
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_029
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_030
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_031
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_032
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_033
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_034
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_035
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_036
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_037
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_038
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_039
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_040
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_041
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_042
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_043
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_044
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_045
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_046
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_047
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_048
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_049
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_050
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_051
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_052
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_053
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_054
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_055
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_056
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_057
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_058
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_059
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_060
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_061
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_062
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_063
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_064
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_065
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_066
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_067
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_068
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_069
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_070
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_071
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_072
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_073
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_074
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_075
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_076
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_077
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_078
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_079
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_080
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_081
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_082
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_083
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_084
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_085
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_086
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_087
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_088
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_089
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_090
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_091
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_092
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_093
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_094
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_095
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_096
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_097
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_098
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_099
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_100
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_101
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_102
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_103
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_104
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_105
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_106
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_107
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_108
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_109
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_110
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_111
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_112
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_113
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_114
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_115
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_116
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_117
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_118
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_119
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_120
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_121
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_122
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_123
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_124
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_125
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_126
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_127
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_128
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_129
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_130
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_131
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_132
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_133
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_134
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_135
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_136
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_137
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_138
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_139
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_140
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_141
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_142
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_143
+rm -r /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_144
diff --git a/mpi/ex_time_144 b/mpi/ex_time_144
new file mode 100755
index 0000000000000000000000000000000000000000..0a4a9fb677423ac55fb9aead925caff83a35fb41
--- /dev/null
+++ b/mpi/ex_time_144
@@ -0,0 +1,576 @@
+echo 001
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_001
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 002
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_002
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 003
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_003
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 004
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_004
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 005
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_005
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 006
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_006
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 007
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_007
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 008
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_008
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 009
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_009
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 010
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_010
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 011
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_011
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 012
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_012
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 013
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_013
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 014
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_014
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 015
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_015
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 016
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_016
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 017
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_017
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 018
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_018
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 019
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_019
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 020
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_020
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 021
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_021
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 022
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_022
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 023
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_023
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 024
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_024
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 025
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_025
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 026
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_026
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 027
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_027
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 028
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_028
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 029
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_029
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 030
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_030
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 031
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_031
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 032
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_032
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 033
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_033
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 034
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_034
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 035
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_035
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 036
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_036
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 037
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_037
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 038
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_038
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 039
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_039
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 040
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_040
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 041
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_041
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 042
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_042
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 043
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_043
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 044
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_044
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 045
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_045
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 046
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_046
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 047
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_047
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 048
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_048
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 049
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_049
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 050
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_050
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 051
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_051
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 052
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_052
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 053
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_053
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 054
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_054
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 055
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_055
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 056
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_056
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 057
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_057
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 058
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_058
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 059
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_059
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 060
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_060
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 061
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_061
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 062
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_062
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 063
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_063
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 064
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_064
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 065
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_065
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 066
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_066
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 067
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_067
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 068
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_068
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 069
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_069
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 070
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_070
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 071
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_071
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 072
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_072
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 073
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_073
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 074
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_074
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 075
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_075
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 076
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_076
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 077
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_077
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 078
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_078
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 079
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_079
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 080
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_080
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 081
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_081
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 082
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_082
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 083
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_083
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 084
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_084
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 085
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_085
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 086
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_086
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 087
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_087
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 088
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_088
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 089
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_089
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 090
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_090
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 091
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_091
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 092
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_092
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 093
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_093
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 094
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_094
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 095
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_095
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 096
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_096
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 097
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_097
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 098
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_098
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 099
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_099
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 100
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_100
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 101
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_101
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 102
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_102
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 103
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_103
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 104
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_104
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 105
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_105
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 106
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_106
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 107
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_107
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 108
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_108
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 109
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_109
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 110
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_110
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 111
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_111
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 112
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_112
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 113
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_113
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 114
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_114
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 115
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_115
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 116
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_116
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 117
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_117
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 118
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_118
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 119
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_119
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 120
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_120
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 121
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_121
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 122
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_122
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 123
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_123
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 124
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_124
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 125
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_125
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 126
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_126
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 127
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_127
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 128
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_128
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 129
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_129
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 130
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_130
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 131
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_131
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 132
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_132
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 133
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_133
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 134
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_134
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 135
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_135
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 136
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_136
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 137
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_137
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 138
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_138
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 139
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_139
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 140
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_140
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 141
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_141
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 142
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_142
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 143
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_143
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
+echo 144
+cd /lfs0/projects/co2/ivar/MPI_run/RunOutput/global_144
+ls -al sib_r200012.nc
+ls -al sib_requib.nc
diff --git a/mpi/extract_equi.py b/mpi/extract_equi.py
new file mode 100644
index 0000000000000000000000000000000000000000..c0e025ad0e8ec85b7fbfa16ee003a3411e569a3d
--- /dev/null
+++ b/mpi/extract_equi.py
@@ -0,0 +1,60 @@
+##### Extract Equi ########
+'''
+Extract equilibrium files and copy them
+to new directory. This circumvents the problem
+that some cores achieve equilibrium earlier than
+other, and therefore the filesnames can be
+different.
+'''
+
+# Experiment name (without _spin or _final)
+exp_name = 'sib4_NRT'
+dir_name = '/scratch/shared/kooij032/NRT/'
+n_cores = 288
+n_iter = 10
+
+# Load libraries
+import glob
+import os
+import shutil
+import numpy as np
+
+# Move equip folder
+equip_dir = dir_name+'output_'+exp_name+'_spin_1850'
+shutil.move(equip_dir, equip_dir+ '_MOVE/')
+
+# Create new equip folder
+if not os.path.exists(equip_dir):
+ os.mkdir(equip_dir)
+
+# Load file list
+flist = sorted(glob.glob(equip_dir+'_MOVE/*'))
+
+# Initialize loop variables
+flist_id = 1
+eq_list = np.zeros(288, dtype=int)
+
+# Loop over all files and determine last equip file per core
+#print(len(flist))
+
+for i in range(len(flist)):
+ if flist[i][-9:-6] != "%03d" % (flist_id,):
+ eq_list[flist_id-1] = i-1
+ flist_id += 1
+
+# Make sure the last core is considered
+eq_list[flist_id-1] = len(flist) -1
+
+
+#print(len(flist) -1)
+#print(flist_id)
+#print(eq_list)
+
+# Copy last equip file to spin folder
+n_iter_str = 's' + "%02d" % (n_iter,) + '.nc'
+for i in range(288):
+ print(flist[eq_list[i]])
+ shutil.copyfile(flist[eq_list[i]], equip_dir+'/sib_requibp'+"%03d" % (i+1,)+n_iter_str)
+ print('FILE COPIED')
+ print('old: '+flist[eq_list[i]])
+ print('new: '+equip_dir+'/sib_requibp'+"%03d" % (i+1,)+n_iter_str)
diff --git a/mpi/io_namel.py b/mpi/io_namel.py
new file mode 100755
index 0000000000000000000000000000000000000000..544cdd2aa69e3c9c4fc2e3c2f32f08a08a72fd0a
--- /dev/null
+++ b/mpi/io_namel.py
@@ -0,0 +1,129 @@
+#!/usr/bin/env python
+# namel_io.py
+
+"""
+Author : Erik
+Original Author: Ivar
+Revision History:
+File created on 06 Oct 2010.
+Recoded to support SiB4 - Erik
+"""
+import shutil
+from numpy import *
+
+import os
+import glob
+
+num_outputdirs = 288
+path_ouput = '/scratch/shared/awoude/'
+sim_name = 'sib4_NRT'
+
+startyear = 1997
+endyear = 2020
+
+spin = False
+n_spin = 10
+
+minlon = -15
+maxlon = 35
+minlat = 33
+maxlat = 72
+
+dtsibout = -1
+
+if spin == True:
+ outputname = 'output_'+sim_name+'_spin_1850'
+ execname = 'ex_dir_'+sim_name+'_spin_1850'
+else:
+ outputname = 'output_'+sim_name+'_sim'
+ execname = 'ex_dir_'+sim_name+'_sim'
+ #spinoutput = 'output_'+sim_name+'_spin_1850'
+
+targdir = os.path.join(path_ouput,outputname)
+
+# Create output folder
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+
+path_exec = '/scratch/shared/awoude/'
+
+targdir = os.path.join(path_exec,execname)
+
+# Create folders to store executables
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+ for i in range(num_outputdirs):
+ targdir2= os.path.join(targdir,'case_%s'%(i+1))
+ if not os.path.exists(targdir2):
+ os.makedirs(targdir2)
+
+path ='/projects/0/ctdas/NRT/data/SiB/mpi'
+
+oldline = [''] * 12
+newline = [''] * 12
+
+orig_namelist = '/projects/0/ctdas/NRT/data/SiB/mpi/namel_sibdrv'
+
+# Create namelists for each thread
+for j in range(12):
+ for i in range(num_outputdirs):
+ i=i+1
+ if j==0:
+ shutil.copyfile(orig_namelist, '%s/namel_%s'%(path,i))
+ file = os.path.join(path,'namel_%s'%i)
+
+ oldline[1] =" out_path = '/scratch/shared/awoude/"
+ newline[1] =" out_path= '/scratch/shared/awoude/%s/" %(outputname)
+
+ if spin == False:
+ oldline[2] =" ic_file = '/projects/0/ctdas/sib4_input/requib/sib_requib2.nc"
+ newline[2] =" ic_file = '/projects/0/ctdas/NRT/data/SiB/restart/sib_r199601p%s.nc" %(str(i).zfill(3))
+ #newline[2] =" ic_file = '/scratch/shared/kooij032/NRT/%s/sib_requibp%ss%s.nc" %(spinoutput,str(i).zfill(3),str(n_spin).zfill(2))
+
+ oldline[3] =" startyear = 1998,"
+ newline[3] =" startyear = %s,"%(str(startyear))
+ oldline[4] =" endyear = 2010,"
+ newline[4] =" endyear = %s,"%(str(endyear))
+ oldline[5] =" spinup = .false.,"
+ newline[5] =" spinup = .%s.,"%(str(spin).lower())
+ oldline[6] =" spinup_maxiter = 5,"
+ newline[6] =" spinup_maxiter = %s,"%(str(n_spin))
+ oldline[7] =" minlon = -180,"
+ newline[7] =" minlon = %s,"%(str(minlon))
+ oldline[8] =" maxlon = 180,"
+ newline[8] =" maxlon = %s,"%(str(maxlon))
+ oldline[9] =" minlat = -90,"
+ newline[9] =" minlat = %s,"%(str(minlat))
+ oldline[10] =" maxlat = 90,"
+ newline[10] =" maxlat = %s,"%(str(maxlat))
+ oldline[11] =" dtsibqp = -1,"
+ newline[11] =" dtsibqp = %s,"%(str(dtsibout))
+
+ # Read - write namelists
+ f = open(file, "r")
+ text = f.read()
+ f.close()
+ f = open(file, "w")
+ f.write(text.replace(oldline[j], newline[j]))
+ f.close()
+
+sib4_script_path = '/projects/0/ctdas/NRT/data/SiB/mpi/sib4_script'
+
+oldline = 'cd /scratch/shared/kooij032/NRT/ex_dir_global/case_${rank}'
+newline = 'cd /scratch/shared/awoude/'+execname+'/case_${rank}'
+
+# Change sib4_script
+f = open(sib4_script_path+'.template' , "r")
+text = f.read()
+f.close()
+f = open(sib4_script_path, "w")
+f.write(text.replace(oldline, newline))
+f.close()
+
+# Change sib4 permissions for mpi
+#os.chmod('/projects/0/ctdas/NRT/data/SiB/mpi/sib4_script', 0o777)
+
+print("All went well, the modifications are done")
+
+if __name__ == "__main__":
+ pass
diff --git a/mpi/make_ex_dir_144 b/mpi/make_ex_dir_144
new file mode 100755
index 0000000000000000000000000000000000000000..543f56cb505d5d0fb14822e59820dacb74247d52
--- /dev/null
+++ b/mpi/make_ex_dir_144
@@ -0,0 +1,147 @@
+rm -r ex_dir/
+mkdir /scratch/p274780/ex_dir
+cd /scratch/p274780/ex_dir
+mkdir case_1
+mkdir case_2
+mkdir case_3
+mkdir case_4
+mkdir case_5
+mkdir case_6
+mkdir case_7
+mkdir case_8
+mkdir case_9
+mkdir case_10
+mkdir case_11
+mkdir case_12
+mkdir case_13
+mkdir case_14
+mkdir case_15
+mkdir case_16
+mkdir case_17
+mkdir case_18
+mkdir case_19
+mkdir case_20
+mkdir case_21
+mkdir case_22
+mkdir case_23
+mkdir case_24
+mkdir case_25
+mkdir case_26
+mkdir case_27
+mkdir case_28
+mkdir case_29
+mkdir case_30
+mkdir case_31
+mkdir case_32
+mkdir case_33
+mkdir case_34
+mkdir case_35
+mkdir case_36
+mkdir case_37
+mkdir case_38
+mkdir case_39
+mkdir case_40
+mkdir case_41
+mkdir case_42
+mkdir case_43
+mkdir case_44
+mkdir case_45
+mkdir case_46
+mkdir case_47
+mkdir case_48
+mkdir case_49
+mkdir case_50
+mkdir case_51
+mkdir case_52
+mkdir case_53
+mkdir case_54
+mkdir case_55
+mkdir case_56
+mkdir case_57
+mkdir case_58
+mkdir case_59
+mkdir case_60
+mkdir case_61
+mkdir case_62
+mkdir case_63
+mkdir case_64
+mkdir case_65
+mkdir case_66
+mkdir case_67
+mkdir case_68
+mkdir case_69
+mkdir case_70
+mkdir case_71
+mkdir case_72
+mkdir case_73
+mkdir case_74
+mkdir case_75
+mkdir case_76
+mkdir case_77
+mkdir case_78
+mkdir case_79
+mkdir case_80
+mkdir case_81
+mkdir case_82
+mkdir case_83
+mkdir case_84
+mkdir case_85
+mkdir case_86
+mkdir case_87
+mkdir case_88
+mkdir case_89
+mkdir case_90
+mkdir case_91
+mkdir case_92
+mkdir case_93
+mkdir case_94
+mkdir case_95
+mkdir case_96
+mkdir case_97
+mkdir case_98
+mkdir case_99
+mkdir case_100
+mkdir case_101
+mkdir case_102
+mkdir case_103
+mkdir case_104
+mkdir case_105
+mkdir case_106
+mkdir case_107
+mkdir case_108
+mkdir case_109
+mkdir case_110
+mkdir case_111
+mkdir case_112
+mkdir case_113
+mkdir case_114
+mkdir case_115
+mkdir case_116
+mkdir case_117
+mkdir case_118
+mkdir case_119
+mkdir case_120
+mkdir case_121
+mkdir case_122
+mkdir case_123
+mkdir case_124
+mkdir case_125
+mkdir case_126
+mkdir case_127
+mkdir case_128
+mkdir case_129
+mkdir case_130
+mkdir case_131
+mkdir case_132
+mkdir case_133
+mkdir case_134
+mkdir case_135
+mkdir case_136
+mkdir case_137
+mkdir case_138
+mkdir case_139
+mkdir case_140
+mkdir case_141
+mkdir case_142
+mkdir case_143
+mkdir case_144
diff --git a/mpi/namel_sibdrv b/mpi/namel_sibdrv
new file mode 100644
index 0000000000000000000000000000000000000000..71e35e5a620faf46f1134cdcdeba0dabc6324987
--- /dev/null
+++ b/mpi/namel_sibdrv
@@ -0,0 +1,216 @@
+
+$CONTROL_LIST_SIBDRV
+ nsib = 62521,
+ starttime = 1,
+ startyear = 2018,
+ endtime = 31,
+ endyear = 2018,
+ dtsib = 600,
+ restart_dtsib = -12,
+ qp_dtsib = 3600,
+ pbp_dtsib = 0,
+ hr_dtsib = 0,
+/
+
+$IO_LIST_SIBDRV
+ pft_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pft.dat'
+ pool_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pool.dat'
+ aero_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_aero.nc'
+ pgdd_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_gdd.dat'
+ pstg_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_stg_EurDrought.dat'
+ phys_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_phys_EurDrought.dat'
+ pool_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_pool.dat'
+ vs_file = '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+ ic_file = '/projects/0/ctdas/NRT/data/SiB//restart/sib_r199601p025.nc'
+ dr_path = '/projects/0/ctdas/awoude/NRT/input/merra2_0.5deg_'
+ tm5_path = '/projects/0/ctdas/linda/sib4_input/TM5MR/'
+ fr_path = '../../sib4_driver/global/gfed4/gfed4_0.5deg_'
+ out_path = '/scratch/shared/awoude//output_sib4_NRT_sim/'
+ out_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sib_outopts_NRT'
+ out_rinfo= '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sibr_outopts'
+/
+
+$SPINUP_LIST_SIBDRV
+ spinup = .false.,
+ spinup_default = .true.,
+ spinup_numyrs = 1,
+ spinup_maxiter = 10,
+ spinup_threshold = 0.01,
+ spinup_writediag = .false.,
+ spinup_writetxtf = .false.,
+/
+
+$SUBGRID_SIBDRV
+ minlon = -15,
+ maxlon = 35,
+ minlat = 33,
+ maxlat = 72,
+/
+
+$PBP_LIST_SIBDRV
+ npbp = 0
+/
+-lon-, -lat-,
+/
+
+$BALAN_LIST_SIBDRV
+ badtc_print = .false.,
+ badtc_stop = .false.,
+ bnum_allow = 10,
+ canb_print = .false.,
+ canb_stop = .false.,
+ canb_thresh = 1.E-6,
+ carbonb_print = .true.,
+ carbonb_stop = .false.,
+ carbonb_thresh = 1.E-6,
+ fireb_print = .false.,
+ fireb_stop = .false.,
+ fireb_thresh = 1.E-6,
+ snocmbn_print = .false.,
+ snocmbn_stop = .false.,
+ snocmbn_thresh = 1.E-6,
+ energyb_print = .false.,
+ energyb_stop = .true.,
+ energyb_thresh = 0.01,
+ waterb_print = .false.,
+ waterb_stop = .true.,
+ waterb_thresh = 0.5,
+/
+
+$PRINT_LIST_SIBDRV
+ print_avec = .false.,
+ print_driver = .false.,
+ print_fire = .false.,
+ print_harvest = .false.,
+ print_pftinfo = .false.,
+ print_pooll = .false.,
+ print_soil = .false.,
+ print_sscol = .false.,
+ print_veg = .false.,
+ print_stop = .false.,
+/
+
+$SWITCH_LIST_SIBDRV
+ cornsoy_switch = .false.,
+ fire_switch = .false.,
+ grazing_switch = .true.,
+ green_switch = .true.,
+ eqclear_switch = .true.,
+ leapyr_switch = .false.,
+ updatelst_switch = .true.,
+ tm5mr_switch = .false.,
+ soilogee_switch = .false.,
+/
+
+------------------------------------------------------------------------------
+ nsib : number of points in simulation
+ starttime : day of year to start simulation
+ startyear : year to start simulation
+ endtime : day of year to stop simulation
+ endyear : year to stop simulation
+ dtsib : prognostic time step, in seconds
+ dtsibrestart : greater than zero implies units of seconds - restart output interval
+ less than zero implies units of months - restart output interval
+ dtsibqp : greater than zero implies units of seconds - QP output interval
+ less than zero implies units of months - QP output interval
+ dtsibpbp : greater than zero implies units of seconds - PBP output interval
+ less than zero implies units of months - PBP output interval
+ dtsibhr : greater than zero implies units of seconds - HR output interval
+ less than zero implies units of months - HR output interval
+
+ pft_info : File containing PFT information
+ pool_info : File containing pool information
+ aero_file : File containing aerodynamical parameters
+ pgdd_file : File containing GDD-based phenological parameters
+ pstg_file : File containing stage-based phenological parameters
+ pnvg_file : File containing non-vegetation parameters
+ phys_file : File containing physiological parameters
+ pool_file : File containing pool respiration/transfer parameters
+ vs_file : File containing vegetation structure
+ ic_file : File containing initial condition/restart values
+ dr_path : Directory containing driver data
+ fr_path : Directory containing fire emissions
+ out_path : Directory for model output
+ out_info : File containing output specification/information
+ out_rinfo : File containing restart specification/information
+
+ spinup : Flag to perform a spinup simulation
+ ->simulation continues until either:
+ -- pools are within threshold equilibrium values
+ -- max number of iterations is met
+ spinup_default : Flag to use default initial conditions for spin-up run
+ -- all pools zero except minimal froot
+ -- soil moisture starts at saturation
+ spinup_numyrs : Number of years in spinup run to run before calculating equilibrium pools
+ spinup_maxiter : Number of interations in a spinup simulation
+ spinup_threshold: Input/output ratio threshold for 'spun-up'
+ spinup_writediag: Flag to follow output choices in spin-up run
+ (false will only save equilibrium files)
+ spinup_writetxtf: Flag to write equilibrium pools to a text file
+
+ minlon : Minimum longitude for setting a subgrid
+ maxlon : Maximum longitude for setting a subgrid
+ minlat : Minimum latitude for setting a subgrid
+ maxlat : Maximum latitude for setting a subgrid
+
+ npbp : Number of PBP's to be saved
+ --corresponding lon/lat pairs (in degrees) are listed below npbp
+ --value of -1 will save all points
+
+ badtc_print : print canopy temperatures?
+ badtc_stop : stop for bad canopy temperatures?
+ bnum_allow : number of allowable balance offenses (i4)
+ canb_print : print canopy balance values?
+ canb_stop : stop if canopy balance fails?
+ canb_thresh : canopy balance threshold (r4)
+ carbonb_print : print carbon balance information?
+ carbonb_stop : stop if carbon balance fails?
+ carbonb_thres : carbon balance threshold (r4)
+ fireb_print : print fire balance information?
+ fireb_stop : stop if fire balance fails?
+ fireb_thres : fire balance threshold (r4)
+ snocmbn_print : print snow combine information?
+ snocmbn_stop : stop if snow combine water balance fails?
+ snocmbn_thresh : snow combine balance threshold (r4)
+ energyb_print : print energy balance values?
+ energyb_stop : stop if energy balance fails?
+ energyb_thresh : energy balance threshold (r4)
+ waterb_print : print water balance values?
+ waterb_stop : stop if water balance fails?
+ waterb_thresh : water balance threshold (r4)
+
+ print_avec : print avec/bvec values?
+ print_driver : print driver data?
+ print_fire : print fire emissions?
+ print_harvest : print harvest information?
+ print_pftinfo : print PFT information?
+ print_pooll : print live pool values?
+ print_soil ; print soil properties?
+ print_sscol : print soil/snow layer info?
+ print_veg : print vegetation values?
+ print_stop : stop after printing information?
+
+ cornsoy_switch : Flag to annually alternate corn/soybeans
+ fire_switch : Flag for fire emissions
+ grazing_switch : Flag for grazing
+ green_switch : Flag to use greenness fraction
+ eqclear_switch : Flag to clear equilibrium variables
+ at start of simulation
+ leapyr_switch : Flag for using leap years (.F. == constant 365 days)
+ updatelst_switch: Flag to update carbon pools at 0 LST (rather than 0 GMT)
+
+=============================
+Julian Days (not leap year )
+ January 1 = 1
+ February 1 = 32
+ March 1 = 60
+ April 1 = 91
+ May 1 = 121
+ June 1 = 152
+ July 1 = 182
+ August 1 = 213
+ September 1 = 244
+ October 1 = 274
+ November 1 = 305
+ December 1 = 335
+=============================
diff --git a/mpi/namel_sibdrv.copy b/mpi/namel_sibdrv.copy
new file mode 100644
index 0000000000000000000000000000000000000000..6cd4d53417c2232c9a31c8e8064e0d4b836fabe6
--- /dev/null
+++ b/mpi/namel_sibdrv.copy
@@ -0,0 +1,216 @@
+
+$CONTROL_LIST_SIBDRV
+ nsib = 62521,
+ starttime = 1,
+ startyear = 1998,
+ endtime = 365,
+ endyear = 2010,
+ dtsib = 600,
+ restart_dtsib = -12,
+ qp_dtsib = 10800,
+ pbp_dtsib = 0,
+ hr_dtsib = 0,
+/
+
+$IO_LIST_SIBDRV
+ pft_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pft.dat'
+ pool_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pool.dat'
+ aero_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_aero.nc'
+ pgdd_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_gdd.dat'
+ pstg_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_stg_EurDrought.dat'
+ phys_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_phys_EurDrought.dat'
+ pool_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_pool.dat'
+ vs_file = '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+ ic_file = '/projects/0/ctdas/sib4_input/requib/sib_requib2.nc'
+ dr_path = '/projects/0/ctdas/sib4_input/meteo/merra/merra2_0.5deg_'
+ tm5_path = '/projects/0/ctdas/linda/sib4_input/TM5MR/'
+ fr_path = '../../sib4_driver/global/gfed4/gfed4_0.5deg_'
+ out_path = '/scratch/shared/rdkok/NRT/'
+ out_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sib_outopts_NRT'
+ out_rinfo= '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sibr_outopts'
+/
+
+$SPINUP_LIST_SIBDRV
+ spinup = .false.,
+ spinup_default = .true.,
+ spinup_numyrs = 1,
+ spinup_maxiter = 10,
+ spinup_threshold = 0.01,
+ spinup_writediag = .false.,
+ spinup_writetxtf = .false.,
+/
+
+$SUBGRID_SIBDRV
+ minlon = -180,
+ maxlon = 180,
+ minlat = -90,
+ maxlat = 90,
+/
+
+$PBP_LIST_SIBDRV
+ npbp = 0
+/
+-lon-, -lat-,
+/
+
+$BALAN_LIST_SIBDRV
+ badtc_print = .false.,
+ badtc_stop = .false.,
+ bnum_allow = 10,
+ canb_print = .false.,
+ canb_stop = .false.,
+ canb_thresh = 1.E-6,
+ carbonb_print = .false.,
+ carbonb_stop = .false.,
+ carbonb_thresh = 1.E-6,
+ fireb_print = .false.,
+ fireb_stop = .false.,
+ fireb_thresh = 1.E-6,
+ snocmbn_print = .false.,
+ snocmbn_stop = .false.,
+ snocmbn_thresh = 1.E-6,
+ energyb_print = .false.,
+ energyb_stop = .true.,
+ energyb_thresh = 0.01,
+ waterb_print = .false.,
+ waterb_stop = .true.,
+ waterb_thresh = 0.5,
+/
+
+$PRINT_LIST_SIBDRV
+ print_avec = .false.,
+ print_driver = .false.,
+ print_fire = .false.,
+ print_harvest = .false.,
+ print_pftinfo = .false.,
+ print_pooll = .false.,
+ print_soil = .false.,
+ print_sscol = .false.,
+ print_veg = .false.,
+ print_stop = .false.,
+/
+
+$SWITCH_LIST_SIBDRV
+ cornsoy_switch = .false.,
+ fire_switch = .false.,
+ grazing_switch = .true.,
+ green_switch = .true.,
+ eqclear_switch = .true.,
+ leapyr_switch = .false.,
+ updatelst_switch = .true.,
+ tm5mr_switch = .false.,
+ soilogee_switch = .false.,
+/
+
+------------------------------------------------------------------------------
+ nsib : number of points in simulation
+ starttime : day of year to start simulation
+ startyear : year to start simulation
+ endtime : day of year to stop simulation
+ endyear : year to stop simulation
+ dtsib : prognostic time step, in seconds
+ dtsibrestart : greater than zero implies units of seconds - restart output interval
+ less than zero implies units of months - restart output interval
+ dtsibqp : greater than zero implies units of seconds - QP output interval
+ less than zero implies units of months - QP output interval
+ dtsibpbp : greater than zero implies units of seconds - PBP output interval
+ less than zero implies units of months - PBP output interval
+ dtsibhr : greater than zero implies units of seconds - HR output interval
+ less than zero implies units of months - HR output interval
+
+ pft_info : File containing PFT information
+ pool_info : File containing pool information
+ aero_file : File containing aerodynamical parameters
+ pgdd_file : File containing GDD-based phenological parameters
+ pstg_file : File containing stage-based phenological parameters
+ pnvg_file : File containing non-vegetation parameters
+ phys_file : File containing physiological parameters
+ pool_file : File containing pool respiration/transfer parameters
+ vs_file : File containing vegetation structure
+ ic_file : File containing initial condition/restart values
+ dr_path : Directory containing driver data
+ fr_path : Directory containing fire emissions
+ out_path : Directory for model output
+ out_info : File containing output specification/information
+ out_rinfo : File containing restart specification/information
+
+ spinup : Flag to perform a spinup simulation
+ ->simulation continues until either:
+ -- pools are within threshold equilibrium values
+ -- max number of iterations is met
+ spinup_default : Flag to use default initial conditions for spin-up run
+ -- all pools zero except minimal froot
+ -- soil moisture starts at saturation
+ spinup_numyrs : Number of years in spinup run to run before calculating equilibrium pools
+ spinup_maxiter : Number of interations in a spinup simulation
+ spinup_threshold: Input/output ratio threshold for 'spun-up'
+ spinup_writediag: Flag to follow output choices in spin-up run
+ (false will only save equilibrium files)
+ spinup_writetxtf: Flag to write equilibrium pools to a text file
+
+ minlon : Minimum longitude for setting a subgrid
+ maxlon : Maximum longitude for setting a subgrid
+ minlat : Minimum latitude for setting a subgrid
+ maxlat : Maximum latitude for setting a subgrid
+
+ npbp : Number of PBP's to be saved
+ --corresponding lon/lat pairs (in degrees) are listed below npbp
+ --value of -1 will save all points
+
+ badtc_print : print canopy temperatures?
+ badtc_stop : stop for bad canopy temperatures?
+ bnum_allow : number of allowable balance offenses (i4)
+ canb_print : print canopy balance values?
+ canb_stop : stop if canopy balance fails?
+ canb_thresh : canopy balance threshold (r4)
+ carbonb_print : print carbon balance information?
+ carbonb_stop : stop if carbon balance fails?
+ carbonb_thres : carbon balance threshold (r4)
+ fireb_print : print fire balance information?
+ fireb_stop : stop if fire balance fails?
+ fireb_thres : fire balance threshold (r4)
+ snocmbn_print : print snow combine information?
+ snocmbn_stop : stop if snow combine water balance fails?
+ snocmbn_thresh : snow combine balance threshold (r4)
+ energyb_print : print energy balance values?
+ energyb_stop : stop if energy balance fails?
+ energyb_thresh : energy balance threshold (r4)
+ waterb_print : print water balance values?
+ waterb_stop : stop if water balance fails?
+ waterb_thresh : water balance threshold (r4)
+
+ print_avec : print avec/bvec values?
+ print_driver : print driver data?
+ print_fire : print fire emissions?
+ print_harvest : print harvest information?
+ print_pftinfo : print PFT information?
+ print_pooll : print live pool values?
+ print_soil ; print soil properties?
+ print_sscol : print soil/snow layer info?
+ print_veg : print vegetation values?
+ print_stop : stop after printing information?
+
+ cornsoy_switch : Flag to annually alternate corn/soybeans
+ fire_switch : Flag for fire emissions
+ grazing_switch : Flag for grazing
+ green_switch : Flag to use greenness fraction
+ eqclear_switch : Flag to clear equilibrium variables
+ at start of simulation
+ leapyr_switch : Flag for using leap years (.F. == constant 365 days)
+ updatelst_switch: Flag to update carbon pools at 0 LST (rather than 0 GMT)
+
+=============================
+Julian Days (not leap year )
+ January 1 = 1
+ February 1 = 32
+ March 1 = 60
+ April 1 = 91
+ May 1 = 121
+ June 1 = 152
+ July 1 = 182
+ August 1 = 213
+ September 1 = 244
+ October 1 = 274
+ November 1 = 305
+ December 1 = 335
+=============================
diff --git a/mpi/namel_sibdrv.template b/mpi/namel_sibdrv.template
new file mode 100644
index 0000000000000000000000000000000000000000..376a7e3dcefe8d28ec4ccb1908a34d1104318f90
--- /dev/null
+++ b/mpi/namel_sibdrv.template
@@ -0,0 +1,216 @@
+
+$CONTROL_LIST_SIBDRV
+ nsib = 62521,
+ starttime = {start_doy},
+ startyear = {startyear},
+ endtime = {end_doy},
+ endyear = {endyear},
+ dtsib = 600,
+ restart_dtsib = -12,
+ qp_dtsib = 3600,
+ pbp_dtsib = 0,
+ hr_dtsib = 0,
+/
+
+$IO_LIST_SIBDRV
+ pft_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pft.dat'
+ pool_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/info_pool.dat'
+ aero_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_aero.nc'
+ pgdd_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_gdd.dat'
+ pstg_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/phen_stg_EurDrought.dat'
+ phys_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_phys_EurDrought.dat'
+ pool_file = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/params/sib_pool.dat'
+ vs_file = '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+ ic_file = '/projects/0/ctdas/NRT/data/SiB//restart/sib_r199601p{rank}.nc'
+ dr_path = '{merrapath}/merra2_0.5deg_'
+ tm5_path = '/projects/0/ctdas/linda/sib4_input/TM5MR/'
+ fr_path = '../../sib4_driver/global/gfed4/gfed4_0.5deg_'
+ out_path = '{outputpath}/output_sib4_NRT_sim/'
+ out_info = '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sib_outopts_NRT'
+ out_rinfo= '/projects/0/ctdas/NRT/data/SiB/sib4v2/input/sibr_outopts'
+/
+
+$SPINUP_LIST_SIBDRV
+ spinup = .false.,
+ spinup_default = .true.,
+ spinup_numyrs = 1,
+ spinup_maxiter = 10,
+ spinup_threshold = 0.01,
+ spinup_writediag = .false.,
+ spinup_writetxtf = .false.,
+/
+
+$SUBGRID_SIBDRV
+ minlon = -15,
+ maxlon = 35,
+ minlat = 33,
+ maxlat = 72,
+/
+
+$PBP_LIST_SIBDRV
+ npbp = 0
+/
+-lon-, -lat-,
+/
+
+$BALAN_LIST_SIBDRV
+ badtc_print = .false.,
+ badtc_stop = .false.,
+ bnum_allow = 10,
+ canb_print = .false.,
+ canb_stop = .false.,
+ canb_thresh = 1.E-6,
+ carbonb_print = .true.,
+ carbonb_stop = .false.,
+ carbonb_thresh = 1.E-6,
+ fireb_print = .false.,
+ fireb_stop = .false.,
+ fireb_thresh = 1.E-6,
+ snocmbn_print = .false.,
+ snocmbn_stop = .false.,
+ snocmbn_thresh = 1.E-6,
+ energyb_print = .false.,
+ energyb_stop = .true.,
+ energyb_thresh = 0.01,
+ waterb_print = .false.,
+ waterb_stop = .true.,
+ waterb_thresh = 0.5,
+/
+
+$PRINT_LIST_SIBDRV
+ print_avec = .false.,
+ print_driver = .false.,
+ print_fire = .false.,
+ print_harvest = .false.,
+ print_pftinfo = .false.,
+ print_pooll = .false.,
+ print_soil = .false.,
+ print_sscol = .false.,
+ print_veg = .false.,
+ print_stop = .false.,
+/
+
+$SWITCH_LIST_SIBDRV
+ cornsoy_switch = .false.,
+ fire_switch = .false.,
+ grazing_switch = .true.,
+ green_switch = .true.,
+ eqclear_switch = .true.,
+ leapyr_switch = .false.,
+ updatelst_switch = .true.,
+ tm5mr_switch = .false.,
+ soilogee_switch = .false.,
+/
+
+------------------------------------------------------------------------------
+ nsib : number of points in simulation
+ starttime : day of year to start simulation
+ startyear : year to start simulation
+ endtime : day of year to stop simulation
+ endyear : year to stop simulation
+ dtsib : prognostic time step, in seconds
+ dtsibrestart : greater than zero implies units of seconds - restart output interval
+ less than zero implies units of months - restart output interval
+ dtsibqp : greater than zero implies units of seconds - QP output interval
+ less than zero implies units of months - QP output interval
+ dtsibpbp : greater than zero implies units of seconds - PBP output interval
+ less than zero implies units of months - PBP output interval
+ dtsibhr : greater than zero implies units of seconds - HR output interval
+ less than zero implies units of months - HR output interval
+
+ pft_info : File containing PFT information
+ pool_info : File containing pool information
+ aero_file : File containing aerodynamical parameters
+ pgdd_file : File containing GDD-based phenological parameters
+ pstg_file : File containing stage-based phenological parameters
+ pnvg_file : File containing non-vegetation parameters
+ phys_file : File containing physiological parameters
+ pool_file : File containing pool respiration/transfer parameters
+ vs_file : File containing vegetation structure
+ ic_file : File containing initial condition/restart values
+ dr_path : Directory containing driver data
+ fr_path : Directory containing fire emissions
+ out_path : Directory for model output
+ out_info : File containing output specification/information
+ out_rinfo : File containing restart specification/information
+
+ spinup : Flag to perform a spinup simulation
+ ->simulation continues until either:
+ -- pools are within threshold equilibrium values
+ -- max number of iterations is met
+ spinup_default : Flag to use default initial conditions for spin-up run
+ -- all pools zero except minimal froot
+ -- soil moisture starts at saturation
+ spinup_numyrs : Number of years in spinup run to run before calculating equilibrium pools
+ spinup_maxiter : Number of interations in a spinup simulation
+ spinup_threshold: Input/output ratio threshold for 'spun-up'
+ spinup_writediag: Flag to follow output choices in spin-up run
+ (false will only save equilibrium files)
+ spinup_writetxtf: Flag to write equilibrium pools to a text file
+
+ minlon : Minimum longitude for setting a subgrid
+ maxlon : Maximum longitude for setting a subgrid
+ minlat : Minimum latitude for setting a subgrid
+ maxlat : Maximum latitude for setting a subgrid
+
+ npbp : Number of PBP's to be saved
+ --corresponding lon/lat pairs (in degrees) are listed below npbp
+ --value of -1 will save all points
+
+ badtc_print : print canopy temperatures?
+ badtc_stop : stop for bad canopy temperatures?
+ bnum_allow : number of allowable balance offenses (i4)
+ canb_print : print canopy balance values?
+ canb_stop : stop if canopy balance fails?
+ canb_thresh : canopy balance threshold (r4)
+ carbonb_print : print carbon balance information?
+ carbonb_stop : stop if carbon balance fails?
+ carbonb_thres : carbon balance threshold (r4)
+ fireb_print : print fire balance information?
+ fireb_stop : stop if fire balance fails?
+ fireb_thres : fire balance threshold (r4)
+ snocmbn_print : print snow combine information?
+ snocmbn_stop : stop if snow combine water balance fails?
+ snocmbn_thresh : snow combine balance threshold (r4)
+ energyb_print : print energy balance values?
+ energyb_stop : stop if energy balance fails?
+ energyb_thresh : energy balance threshold (r4)
+ waterb_print : print water balance values?
+ waterb_stop : stop if water balance fails?
+ waterb_thresh : water balance threshold (r4)
+
+ print_avec : print avec/bvec values?
+ print_driver : print driver data?
+ print_fire : print fire emissions?
+ print_harvest : print harvest information?
+ print_pftinfo : print PFT information?
+ print_pooll : print live pool values?
+ print_soil ; print soil properties?
+ print_sscol : print soil/snow layer info?
+ print_veg : print vegetation values?
+ print_stop : stop after printing information?
+
+ cornsoy_switch : Flag to annually alternate corn/soybeans
+ fire_switch : Flag for fire emissions
+ grazing_switch : Flag for grazing
+ green_switch : Flag to use greenness fraction
+ eqclear_switch : Flag to clear equilibrium variables
+ at start of simulation
+ leapyr_switch : Flag for using leap years (.F. == constant 365 days)
+ updatelst_switch: Flag to update carbon pools at 0 LST (rather than 0 GMT)
+
+=============================
+Julian Days (not leap year )
+ January 1 = 1
+ February 1 = 32
+ March 1 = 60
+ April 1 = 91
+ May 1 = 121
+ June 1 = 152
+ July 1 = 182
+ August 1 = 213
+ September 1 = 244
+ October 1 = 274
+ November 1 = 305
+ December 1 = 335
+=============================
diff --git a/mpi/namel_sibdrv_v1 b/mpi/namel_sibdrv_v1
new file mode 100644
index 0000000000000000000000000000000000000000..1986f65abfc8971efd784cef54a0857d811ad979
--- /dev/null
+++ b/mpi/namel_sibdrv_v1
@@ -0,0 +1,208 @@
+
+$CONTROL_LIST_SIBDRV
+ nsib = 62521,
+ starttime = 1,
+ startyear = 1998,
+ endtime = 365,
+ endyear = 2010,
+ dtsib = 600,
+ dtsibrestart = -12,
+ dtsibqp = -1,
+ dtsibpbp = 0,
+ dtsibhr = 0,
+/
+
+$IO_LIST_SIBDRV
+pft_info = '/home/kooij032/models/sib4_KH/input/params/info_pft.dat'
+pool_info = '/home/kooij032/models/sib4_KH/input/params/info_pool.dat'
+aero_file = '/home/kooij032/models/sib4_KH/input/params/sib_aero.nc'
+pgdd_file = '/home/kooij032/models/sib4_KH/input/params/phen_gdd.dat'
+pstg_file = '/home/kooij032/models/sib4_KH/input/params/phen_stg.dat'
+phys_file = '/home/kooij032/models/sib4_KH/input/params/sib_phys.dat'
+pool_file = '/home/kooij032/models/sib4_KH/input/params/sib_pool.dat'
+ vs_file = '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+ ic_file = '/projects/0/ctdas/sib4_input/requib/sib_requib2.nc'
+ dr_path = '/projects/0/ctdas/sib4_input/meteo/merra/merra2_0.5deg_'
+ drvr_type = 'merra'
+ out_path = '/scratch/shared/kooij032/'
+ out_info = '/home/kooij032/models/sib4_KH/input/sib_outopts'
+ out_rinfo= '/home/kooij032/models/sib4_KH/input/sibr_outopts'
+/
+
+$SPINUP_LIST_SIBDRV
+ spinup = .false.,
+ spinup_default = .true.,
+ spinup_output = .false.,
+ spinup_numyrs = 1,
+ spinup_maxiter = 5,
+ spinup_threshold = 0.05,
+/
+
+$SUBGRID_SIBDRV
+ minlon = -180,
+ maxlon = 180,
+ minlat = -90,
+ maxlat = 90,
+/
+
+$PBP_LIST_SIBDRV
+ npbp = 0
+/
+-lon-, -lat-,
+/
+
+$BALAN_LIST_SIBDRV
+ badtc_print = .true.,
+ badtc_stop = .false.,
+ bnum_allow = 10,
+ canb_print = .false.,
+ canb_stop = .false.,
+ canb_thresh = 1.E-6,
+ snocmbn_print = .false.,
+ snocmbn_stop = .false.,
+ snocmbn_thresh = 1.E-6
+ energyb_print = .false.,
+ energyb_stop = .true.,
+ energyb_thresh = 0.01,
+ waterb_print = .false.,
+ waterb_stop = .true.,
+ waterb_thresh = 0.50,
+/
+
+$EQPOOL_LIST_SIBDRV
+ eqjump_limit = .false.,
+ eqjump_thresh = 0.5,
+ eq_printf = .false.,
+ eq_pfmol = .false.,
+ eq_prints = 10,
+ eq_psmol = .false.,
+/
+
+$PRINT_LIST_SIBDRV
+ print_avec = .false.,
+ print_driver = .false.,
+ print_harvest = .false.,
+ print_pftinfo = .false.,
+ print_pooll = .false.,
+ print_soil = .false.,
+ print_sscol = .false.,
+ print_veg = .false.,
+ print_stop = .true.,
+/
+
+$SWITCH_LIST_SIBDRV
+ cornsoy_switch = .F.,
+ grazing_switch = .T.,
+ green_switch = .T.,
+ equibclear_switch = .T.,
+ leapyear_switch = .F.,
+ updatelst_switch = .T.,
+/
+
+------------------------------------------------------------------------------
+ nsib : number of points in simulation
+ starttime : day of year to start simulation
+ startyear : year to start simulation
+ endtime : day of year to stop simulation
+ endyear : year to stop simulation
+ dtsib : prognostic time step, in seconds
+ dtsibrestart : greater than zero implies units of seconds - restart output interval
+ less than zero implies units of months - restart output interval
+ dtsibqp : greater than zero implies units of seconds - QP output interval
+ less than zero implies units of months - QP output interval
+ dtsibpbp : greater than zero implies units of seconds - PBP output interval
+ less than zero implies units of months - PBP output interval
+ dtsibhr : greater than zero implies units of seconds - HR output interval
+ less than zero implies units of months - HR output interval
+
+ pft_info : File containing PFT information
+ pool_info : File containing pool information
+ aero_file : File containing aerodynamical parameters
+ phys_file : File containing physiological parameters
+ phen_file : File containing phenological parameters
+ pool_file : File containing pool transfer parameters
+ vs_file : File containing vegetation structure
+ ic_file : File containing initial condition/restart values
+ dr_path : Directory containing driver data
+ drvr_type : Driver data type, choosen from:
+ -> ncep, nceps,
+ merra, merras, tower, towerhr, towerlba
+ out_path : Directory for model output
+ out_info : File containing output specification/information
+ out_rinfo: File containing restart specification/information
+
+ spinup : Flag to perform a spinup simulation
+ ->simulation continues until either:
+ -- pools are within threshold equilibrium values
+ -- max number of iterations is met
+ spinup_default : Flag to use default initial conditions for spin-up run
+ -- all pools zero except minimal froot
+ -- soil moisture starts at saturation
+ spinup_output : Flag to follow output choices in spin-up run
+ (false will only save equilibrium files)
+ spinup_numyrs : Number of years in spinup run to run before calculating equilibrium pools
+ spinup_maxiter : Number of interations in a spinup simulation
+ spinup_threshold: Threshold of the input/output ratio for pools to be considered 'spun-up'
+
+ minlon : Minimum longitude for setting a subgrid
+ maxlon : Maximum longitude for setting a subgrid
+ minlat : Minimum latitude for setting a subgrid
+ maxlat : Maximum latitude for setting a subgrid
+
+ npbp : Number of PBP's to be saved
+ --corresponding lon/lat pairs (in degrees) are listed below npbp
+ --value of -1 will save all points
+
+ badtc_print : print canopy temperatures?
+ badtc_stop : stop for bad canopy temperatures?
+ bnum_allow : number of allowable balance offenses (i4)
+ canb_print : print canopy balance values?
+ canb_stop : stop if canopy balance fails?
+ canb_thresh : canopy balance threshold (r4)
+ energyb_print : print energy balance values?
+ energyb_stop : stop if energy balance fails?
+ energyb_thresh : energy balance threshold (r4)
+ waterb_print : print water balance values?
+ waterb_stop : stop if water balance fails?
+ waterb_thresh : water balance threshold (r4)
+
+ eqjump_limit : limit jump of equilibrium values?
+ eqjump_thresh : jump fraction of eq pool values (r4)
+ eq_printf : print equilibrium pools to a file?
+ eq_pfmol : print file eq pools in moles C? (vs Mg C)
+ eq_prints : number of eq pools to print to screen (i4)
+ eq_psmol : print screen eq pools in moles C? (vs Mg C)
+
+ print_avec : print avec/bvec values?
+ print_driver : print driver data?
+ print_harvest : print harvest information?
+ print_pftinfo : print PFT information?
+ print_pooll : print live pool values?
+ print_soil ; print soil properties?
+ print_sscol : print soil/snow layer info?
+ print_veg : print vegetation values?
+ print_stop : stop after printing info?
+
+ cornsoy_switch : Flag to annually alternate corn/soybeans
+ grazing_switch : Flag for grazing
+ green_switch : Flag to use greenness fraction
+ equibclear_switch : Flag to clear equilibrium calculation variables
+ at start of simulation
+ leapyear_switch : Flag for using leap years (.F. == constant 365 days)
+ updatelst_switch : Flag to update carbon pools at 0 LST (rather than 0 GMT)
+
+=============================
+Julian Days (not leap year )
+ January 1 = 1
+ February 1 = 32
+ March 1 = 60
+ April 1 = 91
+ May 1 = 121
+ June 1 = 152
+ July 1 = 182
+ August 1 = 213
+ September 1 = 244
+ October 1 = 274
+ November 1 = 305
+ December 1 = 335
+=============================
diff --git a/mpi/script_cp_to_JET_ex_144 b/mpi/script_cp_to_JET_ex_144
new file mode 100755
index 0000000000000000000000000000000000000000..1e22932d6f53155bfd2bcff7ca89b9ba0e370141
--- /dev/null
+++ b/mpi/script_cp_to_JET_ex_144
@@ -0,0 +1,3 @@
+cd /home/schaefer/JET_ex/
+cp /lfs0/projects/co2/ivar/MPI_run/ECMWF_1x1_ivar/script_qsub.csh_144 sibcasa_qsub.csh
+cp /lfs0/projects/co2/ivar/MPI_run/ECMWF_1x1_ivar/sibcasa_script_144 sibcasa_script
diff --git a/mpi/sib4_mpi_wrapper b/mpi/sib4_mpi_wrapper
new file mode 100755
index 0000000000000000000000000000000000000000..d895f785c8caeca88046224ce2b0c3916fde0b1e
Binary files /dev/null and b/mpi/sib4_mpi_wrapper differ
diff --git a/mpi/sib4_script b/mpi/sib4_script
new file mode 100755
index 0000000000000000000000000000000000000000..77e32f76108bb76fa91cba14ed8275c0fe11c7e1
--- /dev/null
+++ b/mpi/sib4_script
@@ -0,0 +1,17 @@
+#!/bin/csh -f
+
+if ( ${#argv} != 1 ) then
+ echo "[sib_script] Was expecting 1 argument, got ${#argv} instead."
+ exit -1
+endif
+set rank = ${1}
+@ rank=$rank + 1
+set now = `date`
+echo "[sib_script] rank ${rank} starting at ${now}"
+
+cd /scratch/shared/awoude/ex_dir_sib4_NRT_sim/case_${rank}
+cp /projects/0/ctdas/NRT/data/SiB//sib4v2/code/SiB4D .
+cp /projects/0/ctdas/NRT/data/SiB//mpi/namel_${rank} namel_sibdrv
+
+./SiB4D namel_sibdrv ${rank} 288 >df_${rank}
+
diff --git a/mpi/sib4_script.template b/mpi/sib4_script.template
new file mode 100755
index 0000000000000000000000000000000000000000..1094adb3c5295ef5b4738037accaaadd7644ca59
--- /dev/null
+++ b/mpi/sib4_script.template
@@ -0,0 +1,17 @@
+#!/bin/csh -f
+
+if ( ${{#argv}} != 1 ) then
+ echo "[sib_script] Was expecting 1 argument, got ${{#argv}} instead."
+ exit -1
+endif
+set rank = ${{1}}
+@ rank=$rank + 1
+set now = `date`
+echo "[sib_script] rank ${{rank}} starting at ${{now}}"
+
+cd {outdir}/case_${{rank}}
+cp {sibdir}/sib4v2/code/SiB4D .
+cp {sibdir}/mpi/namel_${{rank}} namel_sibdrv
+
+./SiB4D namel_sibdrv ${{rank}} 288 >df_${{rank}}
+
diff --git a/mpi/sibcasa_mpi_wrapper.c b/mpi/sibcasa_mpi_wrapper.c
new file mode 100644
index 0000000000000000000000000000000000000000..da66e1b0520e3a2374e5ec8459d635034f60b46b
--- /dev/null
+++ b/mpi/sibcasa_mpi_wrapper.c
@@ -0,0 +1,56 @@
+#include <stdio.h>
+#include <errno.h>
+#include <mpi.h>
+
+#define CMDLENGTH 200
+
+int safe_system (const char *command);
+
+int main(int argc, char *argv[]) {
+
+ int ierr;
+ int myrank;
+ char cmd[CMDLENGTH];
+
+ ierr = MPI_Init(&argc, &argv);
+ if (argc != 2) {
+ fprintf(stderr, "[sibcasa_mpi_wrapper] Expecting 1 argument, got %d.\n",argc);
+ exit(-1);
+ }
+ MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
+ snprintf(cmd,CMDLENGTH,"%s %d",argv[1],myrank);
+ printf( "MPI rank %d about to execute command \"%s\".\n",myrank,cmd );
+ safe_system(cmd);
+ ierr = MPI_Finalize( );
+ exit(ierr);
+}
+
+
+
+
+
+int safe_system (const char *command) {
+ int pid, status;
+
+ if (command == 0)
+ return 1;
+ pid = fork();
+ if (pid == -1) // fork failed
+ return -1;
+ if (pid == 0) { // then this is the child
+ char *argv[4];
+ argv[0] = "sh";
+ argv[1] = "-c";
+ argv[2] = (char*)command;
+ argv[3] = 0;
+ execv("/bin/sh", argv);
+ _exit(127);
+ }
+ do {
+ if (waitpid(pid, &status, 0) == -1) {
+ if (errno != EINTR)
+ return -1;
+ } else
+ return status;
+ } while(1);
+}
diff --git a/mpi/sibcasa_mpi_wrapper.o b/mpi/sibcasa_mpi_wrapper.o
new file mode 100644
index 0000000000000000000000000000000000000000..7cb88650ad387b2385c63fa7f8be301270e93837
Binary files /dev/null and b/mpi/sibcasa_mpi_wrapper.o differ
diff --git a/mpi/sibcasa_script_144 b/mpi/sibcasa_script_144
new file mode 100755
index 0000000000000000000000000000000000000000..62557bf1b5d4ec6dd012d34ad2e9ce86d25e02fd
--- /dev/null
+++ b/mpi/sibcasa_script_144
@@ -0,0 +1,15 @@
+#!/bin/csh -f
+
+if ( ${#argv} != 1 ) then
+ echo "[sibcasa_script] Was expecting 1 argument, got ${#argv} instead."
+ exit -1
+endif
+set rank = ${1}
+set now = `date`
+echo "[sibcasa_script] rank ${rank} starting at ${now}"
+
+cd /scratch/shared/erikvs/SiBCASA/mpi_scripts/ex_dir/case_${rank}
+cp /home/erikvs/Modeling/SiBCASA/SiBD3 .
+cp /scratch/shared/erikvs/SiBCASA/mpi_scripts/namel_${rank} namel_sibdrv
+#module switch intel pgi
+./SiBD3>df_${rank}
diff --git a/mpi/submit_sib4 b/mpi/submit_sib4
new file mode 100755
index 0000000000000000000000000000000000000000..44d25ce4f4cc18415578036c0d489c2598db3af0
--- /dev/null
+++ b/mpi/submit_sib4
@@ -0,0 +1,12 @@
+#!/bin/bash
+#
+#SBATCH --nodes=12
+#SBATCH --ntasks-per-node=24
+#SBATCH --time=01:00:00
+#SBATCH -p short
+
+export I_MPI_USE_DYNAMIC_CONNECTIONS=0
+
+srun -n 288 /projects/0/ctdas/NRT/data/SiB/mpi/sib4_mpi_wrapper /projects/0/ctdas/NRT/data/SiB/mpi/sib4_script
+#srun -n 100 /home/erikvs/Modeling/mpi_sib4/sib4_mpi_wrapper /home/p274780/Modeling/mpi_sib4/sib4_script
+
diff --git a/preprocess/Makefile b/preprocess/Makefile
new file mode 100644
index 0000000000000000000000000000000000000000..8d7777918145ab43f9a28bb00ca25c64bfacbc7d
--- /dev/null
+++ b/preprocess/Makefile
@@ -0,0 +1,153 @@
+# Makefile for SiB4 MERRA Processing Tools
+#
+# You will need GNU's version of Make,
+# which is the default on Linux, OS X
+# but not necessarily other Unixes.
+#
+# Prior to changing options,
+# make sure to remove all object files
+# user@host: make clean
+#
+# Values for COMPILER: gcc
+ifndef COMPILER
+ COMPILER = gcc
+endif
+# Currently only uses gfortran.
+#
+# Values for OPT: debug, opt*
+ifndef OPT
+ OPT = opt
+endif
+# Optimized is the default,
+# but to change to debug, specify:
+# user@host:make OPT=debug
+#
+#Values for NC: nc3, nc4
+ifndef NC
+ NC = 4
+endif
+# netcdf 4 is the default,
+# but to change to netcdf 3, specify:
+# user@host:make NC=3
+#
+# You can tell the Makefile where to find NetCDF libraries
+# by setting the NETCDF_ROOT environment variables as well:
+# user@host:~$ export NETCDF_ROOT=/usr/local
+#--------------------------------------------------------------
+# Directory containing netcdf's include/ and lib/ directories.
+ifndef NETCDF_ROOT
+ ifeq ($(NC),3)
+ NCROOT = /usr/local/netcdf3-$(COMPILER)
+ LIBS = -L$(NCROOT)/lib -lnetcdf
+ else
+ NCROOT = /projects/0/ctdas/NRT/data/SiB/privatemodules/nc4
+ H5ROOT = /projects/0/ctdas/NRT/data/SiB/privatemodules/nc4
+ LIBS = -L$(NCROOT)/lib -L$(H5ROOT)/lib -lhdf5_hl -lhdf5 -lnetcdff -lnetcdf
+ endif
+
+ DIREXIST = $(shell if test -d $(NCROOT); then echo yes; else echo no; fi)
+ ifeq ($(DIREXIST),no)
+ NCROOT = /projects/0/ctdas/NRT/data/SiB/privatemodules/nc4
+ H5ROOT = /projects/0/ctdas/NRT/data/SiB/privatemodules/nc4
+ endif
+
+else
+ NCROOT = $(NETCDF_ROOT)
+endif
+INCLUDES = -I$(NCROOT)/include
+
+##To check NCROOT and INCLUDES:
+#$(info $$NCROOT is [${NCROOT}])
+#$(info $$INCLUDES is [${INCLUDES}])
+
+ifeq ($(COMPILER),gcc)
+ F90 = gfortran
+# F90 = ifort
+ ifeq ($(OPT),opt)
+ F90FLAGS = -O2
+ else
+ F90FLAGS = -g -Wall -Wuninitialized -fbounds-check \
+ -ffpe-trap=invalid,zero,overflow -fbacktrace -finit-real=nan
+ endif
+
+ ifeq ($(PROC),powerpc)
+ F90FLAGS += -fconvert=little-endian
+ endif
+
+ F90FLAGS += -fimplicit-none -Wsurprising $(INCLUDES)
+ LFLAGS = $(LIBS)
+endif
+##To check F90FLAGS:
+#$(info $$F90FLAGS is [${F90FLAGS}])
+
+#--------------------------------------------------------
+
+PROC_OBJS = \
+ gpcp_tdown.o \
+ gpcp_tup.o
+
+DRV_OBJS = \
+ gpcp_regrid.o \
+ merra_pullsib_auto.o \
+ merra_pullvar_auto.o \
+ scale_merra_gpcp_auto.o
+
+#--------------------------------------------------------
+%.o: %.f90
+ $(F90) $(F90FLAGS) -c $< -o $@
+
+all: $(PROC_OBJS) $(DRV_OBJS)
+ @echo ""
+ $(F90) gpcp_regrid.o gpcp_tdown.o gpcp_tup.o -o gpcp_regrid $(LFLAGS)
+ @echo Finished making == gpcp_regrid
+ @echo ""
+ $(F90) merra_pullsib_auto.o -o merra_pullsib_auto $(LFLAGS)
+ @echo Finished making == merra_pullsib_auto
+ @echo ""
+ $(F90) merra_pullvar_auto.o -o merra_pullvar_auto $(LFLAGS)
+ @echo Finished making == merra_pullvar_auto
+ @echo ""
+ $(F90) scale_merra_gpcp_auto.o -o scale_merra_auto $(LFLAGS)
+ @echo Finished making == scale_merra_auto
+ @echo ""
+
+gpcp_regrid: gpcp_regrid.o gpcp_tdown.o gpcp_tup.o
+ $(F90) $^ -o gpcp_regrid $(LFLAGS)
+ @echo ""
+ @date
+ @echo Finished making == gpcp_regrid
+ @echo ""
+
+merra_pullvar_auto: merra_pullvar_auto.o
+ $(F90) $^ -o merra_pullvar_auto $(LFLAGS)
+ @echo ""
+ @date
+ @echo Finished making == merra_pullvar_auto
+ @echo ""
+
+merra_pullsib_auto: merra_pullsib_auto.o
+ $(F90) $^ -o merra_pullsib_auto $(LFLAGS)
+ @echo ""
+ @date
+ @echo Finished making == merra_pullsib_auto
+ @echo ""
+
+scale_merra_auto: scale_merra_gpcp_auto.o
+ $(F90) $^ -o scale_merra_auto $(LFLAGS)
+ @echo ""
+ @date
+ @echo Finished making == scale_merra_auto
+ @echo ""
+
+scale_merra_gpcp_auto: scale_merra_gpcp_auto.o
+ $(F90) $^ -o scale_merra_gpcp_auto $(LFLAGS)
+ @echo ""
+ @date
+ @echo Finished making == scale_merra_gpcp_auto
+ @echo ""
+
+clean:
+ rm -f *.mod *~ *.o
+
+cleane:
+ rm -f gpcp_regrid merra_pullsib merra_pullvar_auto scale_merra
diff --git a/preprocess/README_merra b/preprocess/README_merra
new file mode 100644
index 0000000000000000000000000000000000000000..b61f3a373ca622f0b8dfd6f3ae7eb976f8760968
--- /dev/null
+++ b/preprocess/README_merra
@@ -0,0 +1,71 @@
+**********************************************************************
+*******************STEPS TO PROCESS MERRA2 DATA***********************
+
+--2/3-degree longitude by 1/2-degree latitude
+--hourly resolution
+--https://gmao.gsfc.nasa.gov/reanalysis/MERRA-2/
+--Gelero, R., McCarty, W., Suarez, M.J., Todling, R., Molod, A.,
+ Takacs, L., ..., Zhao, B. (2017). The Modern-Era Restrospective
+ Analysis for Research and Applications, Version 2 (MERRA-2).
+ J. Climate, 30, 5419-5454, https://doi:10.1175/JCLI-D-16-0758.1.
+
+1) Download the data
+ --Use the script "getmerra"
+ --Edit script "getmerra" to specify:
+ > Output directory
+ > Year to download
+ > Month(s) to download
+ --Run "getmerra"
+
+2) Pull out the variables required
+ --Use the fortran program merra_pullvar.f90
+ --Edit the program to specify:
+ > Starting and stopping years and months
+ > Directory of original MERRA data
+ > Directory and prefix for files of selected MERRA data
+ --Compile (make merra_pullvar)
+ --Run merra_pullvar executable
+
+3) Scale the MERRA-2 precipitation to GPCP
+ --Prepare the GPCP data
+ > Needs to be same spatial resolution as MERRA
+ and monthly total precipitation.
+ > To convert from 2.5-degrees and
+ to calculate monthly totals from average daily rates,
+ use the fortran program gpcp_regrid.f90.
+
+ --Use the fortran program scale_merra_gpcp.f90
+ --Edit the program to specify:
+ > Starting and stopping years
+ > Starting and stopping months
+ > GPCP Precipitation File (Version 2.3)
+ ---Assumes GPCP data are in global, gridded files
+ (same spatial resolution; month total precip (mm))
+ > Directory and prefix for the MERRA files
+ --Compile (make scale_merra)
+ --Run scale_merra executable
+
+4) Pull out the SiB points
+ --Use the fortran program merra_pullsib.f90
+ --Edit the program to specify:
+ > Starting and stopping years
+ > Starting and stopping months
+ > Directory and prefix for the global MERRA files
+ (gridded at 2/3-degree by 1/2-degree)
+ > Directory and prefix for the SiB4 MERRA files
+ (vector of nsib points at 1/2-degree by 1/2-degree)
+ > Filename specifying the SiB4 gridpoints
+ --Compile (make merra_pullsib)
+ --Run merra_pullsib executable
+
+5) Check the results
+ --Use sib4plot
+ --Press the Driver Data button and either select a
+ single file or specify a time range.
+ --Once the file opens, select which variable to plot
+
+
+*********************************************************************
+Questions? Contact Kathy Haynes, kdhaynes@atmos.colostate.edu
+Last Modified: January, 2018
+*********************************************************************
diff --git a/preprocess/archiv/SiB4_PreProcessing_CarbonTracker.ipynb b/preprocess/archiv/SiB4_PreProcessing_CarbonTracker.ipynb
new file mode 100644
index 0000000000000000000000000000000000000000..3b3a5be47a112d1fdd6ff0582bfc140d77524948
--- /dev/null
+++ b/preprocess/archiv/SiB4_PreProcessing_CarbonTracker.ipynb
@@ -0,0 +1,205 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# Load libraries\n",
+ "#import numpy as np\n",
+ "#import pandas as pd\n",
+ "#import matplotlib.pyplot as plt\n",
+ "#import seaborn as sns\n",
+ "\n",
+ "import netCDF4 as nc\n",
+ "import sys\n",
+ "import glob\n",
+ "import os\n",
+ "\n",
+ "#import warnings\n",
+ "\n",
+ "#sns.set_style('white')\n",
+ "#%matplotlib inline\n",
+ "\n",
+ "outputdir = '/Users/lindakooijmans/Mounts/Scratch/SiB4v2_Biosphere_Fluxes/'\n",
+ "\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "sys.path.append('/Users/lindakooijmans/Documents/Python/Funcs/')\n",
+ "import sib4maptools as sibtools"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Check if files exist\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "\n",
+ "for yy in range(2010, 2020):\n",
+ " for mm in range(1, 13):\n",
+ " print(str(yy)+\"{:02}\".format(mm))\n",
+ " filedir = '/Users/lindakooijmans/Mounts/Scratch/SiB4v2_Biosphere_Fluxes_GCP_v206/SiB4v2_BioFluxes_'+str(yy)+\"{:02}\".format(mm)+'.nc'\n",
+ " if os.path.isfile(filedir):\n",
+ " print(filedir)\n",
+ " #files = glob.glob(filedir)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {},
+ "source": [
+ "## Convert lat-lon to 2d map and save as nc file"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "\n",
+ "for yy in range(2010, 2020): \n",
+ " for mm in range(1, 13):\n",
+ " \n",
+ " ########################\n",
+ " ###### Load Data #######\n",
+ " ########################\n",
+ " \n",
+ " filedir = '/Users/lindakooijmans/Mounts/Scratch/output_merged/qsib_'+str(yy)+'{:02}'.format(mm)+'.g.qp2.nc'\n",
+ " \n",
+ " files = glob.glob(filedir)\n",
+ " \n",
+ " with nc.Dataset(files[0]) as d:\n",
+ " time_orig = d['time'][:]\n",
+ " lonsib_orig = d['lonsib'][:]\n",
+ " latsib_orig = d['latsib'][:]\n",
+ "\n",
+ " gpp_orig = d['gpp'][:,:]\n",
+ " nee_orig = d['nee'][:,:]\n",
+ " reco_orig = d['reco'][:,:]\n",
+ "\n",
+ " print(filedir+\" loaded\")\n",
+ " \n",
+ " ##############################\n",
+ " ###### Create new file #######\n",
+ " ##############################\n",
+ " \n",
+ " newfiledir = outputdir+'SiB4v2_BioFluxes_'+str(yy)+'{:02}'.format(mm)+'.nc'\n",
+ "\n",
+ " x = nc.Dataset(newfiledir,'w',format='NETCDF4')\n",
+ "\n",
+ " # -- Create dimension\n",
+ "\n",
+ " x.createDimension('latitude', 360)\n",
+ " x.createDimension('longitude', 720)\n",
+ " x.createDimension('time', len(time_orig))\n",
+ "\n",
+ " # -- Create variables: Dataset.createVariable(<var_id>, <type>, <dimensions>)\n",
+ " latsib = x.createVariable('latitude','f',('latitude'))\n",
+ " lonsib = x.createVariable('longitude','f',('longitude'))\n",
+ " time = x.createVariable('time','f',('time'))\n",
+ " gpp = x.createVariable('gpp','f',('time','latitude', 'longitude'))\n",
+ " reco = x.createVariable('reco','f',('time','latitude', 'longitude'))\n",
+ " nee = x.createVariable('nee','f',('time','latitude', 'longitude'))\n",
+ "\n",
+ " # -- Write array to file\n",
+ " latsib[:] = np.arange(-89.75, 90.25, 0.5)\n",
+ " lonsib[:] = np.arange(-179.75, 180.25, 0.5)\n",
+ " time[:] = time_orig[:]\n",
+ " gpp[:,:,:] = sibtools.convert_2d(gpp_orig, latsib_orig, lonsib_orig)\n",
+ " reco[:,:,:] = sibtools.convert_2d(reco_orig, latsib_orig, lonsib_orig)\n",
+ " nee[:,:,:] = sibtools.convert_2d(nee_orig, latsib_orig, lonsib_orig)\n",
+ "\n",
+ " # -- Set attributes of variables\n",
+ " latsib.setncattr('long_name','Latitude')\n",
+ " lonsib.setncattr('long_name','Longitude')\n",
+ " time.setncattr('unit','3-hourly time step')\n",
+ " time.setncattr('long_name','time')\n",
+ " gpp.setncattr('unit','micromol m-2 s-1')\n",
+ " gpp.setncattr('long_name','Gross Primary Productivity')\n",
+ " gpp.setncattr('comment','Positive values are a flux from the atmosphere to the biosphere')\n",
+ " nee.setncattr('unit','micromol m-2 s-1')\n",
+ " nee.setncattr('long_name','Net Ecosystem Exchange')\n",
+ " nee.setncattr('comment','Positive values are a flux from the biosphere to the atmosphere')\n",
+ " reco.setncattr('unit','micromol m-2 s-1')\n",
+ " reco.setncattr('long_name','Total Ecosystem Respiration')\n",
+ " reco.setncattr('comment','Positive values are a flux from the biosphere to the atmosphere')\n",
+ "\n",
+ " # -- Set metadata\n",
+ " # x.setncattr('creation_date',datetime.datetime.now().strftime('%Y-%m-%d %H:%M:%S'))\n",
+ " x.setncattr('release_note','File created by Linda Kooijmans (Wageningen University)')\n",
+ " x.setncattr('created','September, 2020')\n",
+ "\n",
+ " # -- Close file\n",
+ " x.close()\n",
+ "\n",
+ " print(newfiledir+\" created\")"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.6.8"
+ },
+ "varInspector": {
+ "cols": {
+ "lenName": 16,
+ "lenType": 16,
+ "lenVar": 40
+ },
+ "kernels_config": {
+ "python": {
+ "delete_cmd_postfix": "",
+ "delete_cmd_prefix": "del ",
+ "library": "var_list.py",
+ "varRefreshCmd": "print(var_dic_list())"
+ },
+ "r": {
+ "delete_cmd_postfix": ") ",
+ "delete_cmd_prefix": "rm(",
+ "library": "var_list.r",
+ "varRefreshCmd": "cat(var_dic_list()) "
+ }
+ },
+ "types_to_exclude": [
+ "module",
+ "function",
+ "builtin_function_or_method",
+ "instance",
+ "_Feature"
+ ],
+ "window_display": false
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}
diff --git a/preprocess/archiv/getmerra b/preprocess/archiv/getmerra
new file mode 100755
index 0000000000000000000000000000000000000000..50cbae9c3db1a476b5bb86880a02ecffbef445e6
--- /dev/null
+++ b/preprocess/archiv/getmerra
@@ -0,0 +1,24 @@
+#!/bin/bash
+
+##User Information
+MDIR=/scratch/shared/nsmith/merra_orig/
+YR=2019
+MON=("08")
+##
+
+cd $MDIR
+
+for i in ${MON[*]}; do
+ mkdir ./$YR${i}
+ cd ./$YR${i}
+ echo $i
+# wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs_cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXFLX.5.12.4/$YR/${i}
+
+# wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs_cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXSLV.5.12.4/$YR/${i}
+
+# wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs-cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXRAD.5.12.4/$YR/${i}
+ wget -r -A.nc4 --auth-no-challenge=on http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXRAD.5.12.4/$YR/$i/
+ rm *.gif *.txt *.nc4.xml
+ cd ..
+done
+
diff --git a/preprocess/archiv/getmerra_auto b/preprocess/archiv/getmerra_auto
new file mode 100755
index 0000000000000000000000000000000000000000..6167ffda2d6a4a63c18aeaac46463dec159b6e3a
--- /dev/null
+++ b/preprocess/archiv/getmerra_auto
@@ -0,0 +1,27 @@
+#!/bin/bash
+
+##User Information
+MDIR=$4
+YR=$1
+MON=($2 $3)
+##
+
+echo $MDIR
+echo $YR
+echo $MON
+cd $MDIR
+
+for i in ${MON[@]}; do
+ mkdir ./$YR${i}
+ cd ./$YR${i}
+ echo 'Current month: '$i
+ #wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs_cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXFLX.5.12.4/$YR/${i}
+
+ #wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs_cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXSLV.5.12.4/$YR/${i}
+
+ wget -r -A.nc4 --cut-dirs=5 --load-cookies ~/.urs-cookies --save-cookies ~/.urs_cookies --auth-no-challenge=on --keep-session-cookies http://goldsmr4.gesdisc.eosdis.nasa.gov/data/MERRA2/M2T1NXRAD.5.12.4/$YR/${i}/
+
+ rm *.gif *.txt *.nc4.xml
+ cd ..
+done
+
diff --git a/preprocess/archiv/io_namel.py b/preprocess/archiv/io_namel.py
new file mode 100755
index 0000000000000000000000000000000000000000..2cd1d79032f403cedd967e4a7a8eb324a69bcebb
--- /dev/null
+++ b/preprocess/archiv/io_namel.py
@@ -0,0 +1,127 @@
+#!/usr/bin/env python
+# namel_io.py
+
+"""
+Author : Erik
+Original Author: Ivar
+Revision History:
+File created on 06 Oct 2010.
+Recoded to support SiB4 - Erik
+"""
+import shutil
+from numpy import *
+
+import os
+import glob
+
+num_outputdirs = 288
+path_output = '/scratch/shared/awoude/'
+sibdir = '/projects/0/ctdas/NRT/data/SiB/'
+path_exec = sibdir + 'mpi/'
+sim_name = 'sib4_NRT'
+
+startyear = 2018
+endyear = 2018
+
+spin = False
+n_spin = 10
+
+minlon = -15
+maxlon = 35
+minlat = 33
+maxlat = 72
+
+dtsibout = -1
+
+if spin == True:
+ outputname = 'output_'+sim_name+'_spin_1850'
+ execname = 'ex_dir_'+sim_name+'_spin_1850'
+else:
+ outputname = 'output_'+sim_name+'_sim'
+ execname = 'ex_dir_'+sim_name+'_sim'
+ #spinoutput = 'output_'+sim_name+'_spin_1850'
+
+targdir = os.path.join(path_output, outputname)
+# Create output folder
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+
+
+targdir = os.path.join(path_output ,execname)
+# Create folders to store executables
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+ for i in range(num_outputdirs):
+ targdir2= os.path.join(targdir,'case_%s'%(i+1))
+ if not os.path.exists(targdir2):
+ os.makedirs(targdir2)
+
+path = path_exec
+
+oldline = [''] * 12
+newline = [''] * 12
+
+orig_namelist = path_exec + 'namel_sibdrv'
+
+# Create namelists for each thread
+for j in range(12):
+ for i in range(1, num_outputdirs+1):
+ if j==0:
+ shutil.copyfile(orig_namelist, '%s/namel_%s'%(path,i))
+ file = os.path.join(path,'namel_%s'%i)
+
+ oldline[1] =" out_path = '/scratch/shared/nsmith/NRT/"
+ newline[1] =" out_path = %s/%s/"%(path_output, outputname)
+
+ if spin == False:
+ oldline[2] =" ic_file = '/projects/0/ctdas/NRT/data/SiB//restart/sib_r199601p025.nc'"
+ newline[2] =" ic_file = '%s/restart/sib_r199601p%s.nc'" %(sibdir, str(i).zfill(3))
+ #newline[2] =" ic_file = '/scratch/shared/nsmith/NRT/%s/sib_requibp%ss%s.nc" %(spinoutput,str(i).zfill(3),str(n_spin).zfill(2))
+
+ oldline[3] =" startyear = 1998,"
+ newline[3] =" startyear = %s,"%(str(startyear))
+ oldline[4] =" endyear = 2010,"
+ newline[4] =" endyear = %s,"%(str(endyear))
+ oldline[5] =" spinup = .false.,"
+ newline[5] =" spinup = .%s.,"%(str(spin).lower())
+ oldline[6] =" spinup_maxiter = 5,"
+ newline[6] =" spinup_maxiter = %s,"%(str(n_spin))
+ oldline[7] =" minlon = -180,"
+ newline[7] =" minlon = %s,"%(str(minlon))
+ oldline[8] =" maxlon = 180,"
+ newline[8] =" maxlon = %s,"%(str(maxlon))
+ oldline[9] =" minlat = -90,"
+ newline[9] =" minlat = %s,"%(str(minlat))
+ oldline[10] =" maxlat = 90,"
+ newline[10] =" maxlat = %s,"%(str(maxlat))
+ oldline[11] =" dtsibqp = -1,"
+ newline[11] =" dtsibqp = %s,"%(str(dtsibout))
+
+ # Read - write namelists
+ f = open(file, "r")
+ text = f.read()
+ f.close()
+ f = open(file, "w")
+ f.write(text.replace(oldline[j], newline[j]))
+ f.close()
+
+sib4_script_path = path_exec + '/sib4_script'
+
+oldline = 'cd /scratch/shared/kooij032/NRT/ex_dir_global/case_${rank}'
+newline = 'cd ' + path_output + execname + '/case_${rank}'
+
+# Change sib4_script
+f = open(sib4_script_path+'.template' , "r")
+text = f.read()
+f.close()
+f = open(sib4_script_path, "w")
+f.write(text.replace(oldline, newline))
+f.close()
+
+# Change sib4 permissions for mpi ---gives permission error for me (RdK)
+#os.chmod(sib4_script_path, 0o777)
+
+print("All went well, the modifications are done")
+
+if __name__ == "__main__":
+ pass
diff --git a/preprocess/archiv/io_namel_nrt.py b/preprocess/archiv/io_namel_nrt.py
new file mode 100755
index 0000000000000000000000000000000000000000..8ea8211e701d7a164821b0fd9e7aa969ecdca788
--- /dev/null
+++ b/preprocess/archiv/io_namel_nrt.py
@@ -0,0 +1,127 @@
+#!/usr/bin/env python
+# namel_io.py
+
+"""
+Author : Erik
+Original Author: Ivar
+Revision History:
+File created on 06 Oct 2010.
+Recoded to support SiB4 - Erik
+"""
+import shutil
+from numpy import *
+
+import os
+import glob
+
+num_outputdirs = 288
+path_output = '{outputdir}'
+sibdir = '{sibdir}'
+path_exec = sibdir + 'mpi/'
+sim_name = 'sib4_NRT'
+
+startyear = {startyear}
+endyear = {endyear}
+
+spin = False
+n_spin = 10
+
+minlon = -15
+maxlon = 35
+minlat = 33
+maxlat = 72
+
+dtsibout = -1
+
+if spin == True:
+ outputname = 'output_'+sim_name+'_spin_1850'
+ execname = 'ex_dir_'+sim_name+'_spin_1850'
+else:
+ outputname = 'output_'+sim_name+'_sim'
+ execname = 'ex_dir_'+sim_name+'_sim'
+ #spinoutput = 'output_'+sim_name+'_spin_1850'
+
+targdir = os.path.join(path_output, outputname)
+# Create output folder
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+
+
+targdir = os.path.join(path_output ,execname)
+# Create folders to store executables
+if not os.path.exists(targdir):
+ os.makedirs(targdir)
+ for i in range(num_outputdirs):
+ targdir2= os.path.join(targdir,'case_%s'%(i+1))
+ if not os.path.exists(targdir2):
+ os.makedirs(targdir2)
+
+path = path_exec
+
+oldline = [''] * 12
+newline = [''] * 12
+
+orig_namelist = path_exec + 'namel_sibdrv'
+
+# Create namelists for each thread
+for j in range(12):
+ for i in range(1, num_outputdirs+1):
+ if j==0:
+ shutil.copyfile(orig_namelist, '%s/namel_%s'%(path,i))
+ file = os.path.join(path,'namel_%s'%i)
+
+ oldline[1] =" out_path = '/scratch/shared/nsmith/NRT/"
+ newline[1] =" out_path = %s/%s/"%(path_output, outputname)
+
+ if spin == False:
+ oldline[2] =" ic_file = '/projects/0/ctdas/NRT/data/SiB//restart/sib_r199601p025.nc'"
+ newline[2] =" ic_file = '%s/restart/sib_r199601p%s.nc'" %(sibdir, str(i).zfill(3))
+ #newline[2] =" ic_file = '/scratch/shared/nsmith/NRT/%s/sib_requibp%ss%s.nc" %(spinoutput,str(i).zfill(3),str(n_spin).zfill(2))
+
+ oldline[3] =" startyear = 1998,"
+ newline[3] =" startyear = %s,"%(str(startyear))
+ oldline[4] =" endyear = 2010,"
+ newline[4] =" endyear = %s,"%(str(endyear))
+ oldline[5] =" spinup = .false.,"
+ newline[5] =" spinup = .%s.,"%(str(spin).lower())
+ oldline[6] =" spinup_maxiter = 5,"
+ newline[6] =" spinup_maxiter = %s,"%(str(n_spin))
+ oldline[7] =" minlon = -180,"
+ newline[7] =" minlon = %s,"%(str(minlon))
+ oldline[8] =" maxlon = 180,"
+ newline[8] =" maxlon = %s,"%(str(maxlon))
+ oldline[9] =" minlat = -90,"
+ newline[9] =" minlat = %s,"%(str(minlat))
+ oldline[10] =" maxlat = 90,"
+ newline[10] =" maxlat = %s,"%(str(maxlat))
+ oldline[11] =" dtsibqp = -1,"
+ newline[11] =" dtsibqp = %s,"%(str(dtsibout))
+
+ # Read - write namelists
+ f = open(file, "r")
+ text = f.read()
+ f.close()
+ f = open(file, "w")
+ f.write(text.replace(oldline[j], newline[j]))
+ f.close()
+
+sib4_script_path = path_exec + '/sib4_script'
+
+oldline = 'cd /scratch/shared/kooij032/NRT/ex_dir_global/case_${{rank}}'
+newline = 'cd ' + path_output + execname + '/case_${{rank}}'
+
+# Change sib4_script
+f = open(sib4_script_path+'.template' , "r")
+text = f.read()
+f.close()
+f = open(sib4_script_path, "w")
+f.write(text.replace(oldline, newline))
+f.close()
+
+# Change sib4 permissions for mpi ---gives permission error for me (RdK)
+#os.chmod(sib4_script_path, 0o777)
+
+print("All went well, the modifications are done")
+
+if __name__ == "__main__":
+ pass
diff --git a/preprocess/archiv/sib4_preprocessing_carbontracker.py b/preprocess/archiv/sib4_preprocessing_carbontracker.py
new file mode 100644
index 0000000000000000000000000000000000000000..6a24b3037fca6e7416dfea7056250395e17af60c
--- /dev/null
+++ b/preprocess/archiv/sib4_preprocessing_carbontracker.py
@@ -0,0 +1,86 @@
+import netCDF4 as nc
+import sys
+import glob
+import os
+
+sys.path.append('/Users/lindakooijmans/Documents/Python/Funcs/')
+import sib4maptools as sibtools
+
+outputdir = '/scratch/shared/nsmith/test_near_real_time/sib4_out_test'
+
+for yy in range(2010, 2020):
+ for mm in range(1, 13):
+
+ ########################
+ ###### Load Data #######
+ ########################
+
+ filedir = '/scratch/shared/nsmith/NRT/output_sib4_NRT_sim/qsib_'+str(yy)+'{:02}'.format(mm)+'.g.qp2.nc'
+
+ files = glob.glob(filedir)
+
+ with nc.Dataset(files[0]) as d:
+ time_orig = d['time'][:]
+ lonsib_orig = d['lonsib'][:]
+ latsib_orig = d['latsib'][:]
+
+ gpp_orig = d['gpp'][:,:]
+ nee_orig = d['nee'][:,:]
+ reco_orig = d['reco'][:,:]
+
+ print(filedir+" loaded")
+
+ ##############################
+ ###### Create new file #######
+ ##############################
+
+ newfiledir = outputdir+'SiB4v2_BioFluxes_'+str(yy)+'{:02}'.format(mm)+'.nc'
+
+ x = nc.Dataset(newfiledir,'w',format='NETCDF4')
+
+ # -- Create dimension
+
+ x.createDimension('latitude', 360)
+ x.createDimension('longitude', 720)
+ x.createDimension('time', len(time_orig))
+
+ # -- Create variables: Dataset.createVariable(<var_id>, <type>, <dimensions>)
+ latsib = x.createVariable('latitude','f',('latitude'))
+ lonsib = x.createVariable('longitude','f',('longitude'))
+ time = x.createVariable('time','f',('time'))
+ gpp = x.createVariable('gpp','f',('time','latitude', 'longitude'))
+ reco = x.createVariable('reco','f',('time','latitude', 'longitude'))
+ nee = x.createVariable('nee','f',('time','latitude', 'longitude'))
+
+ # -- Write array to file
+ latsib[:] = np.arange(-89.75, 90.25, 0.5)
+ lonsib[:] = np.arange(-179.75, 180.25, 0.5)
+ time[:] = time_orig[:]
+ gpp[:,:,:] = sibtools.convert_2d(gpp_orig, latsib_orig, lonsib_orig)
+ reco[:,:,:] = sibtools.convert_2d(reco_orig, latsib_orig, lonsib_orig)
+ nee[:,:,:] = sibtools.convert_2d(nee_orig, latsib_orig, lonsib_orig)
+
+ # -- Set attributes of variables
+ latsib.setncattr('long_name','Latitude')
+ lonsib.setncattr('long_name','Longitude')
+ time.setncattr('unit','3-hourly time step')
+ time.setncattr('long_name','time')
+ gpp.setncattr('unit','micromol m-2 s-1')
+ gpp.setncattr('long_name','Gross Primary Productivity')
+ gpp.setncattr('comment','Positive values are a flux from the atmosphere to the biosphere')
+ nee.setncattr('unit','micromol m-2 s-1')
+ nee.setncattr('long_name','Net Ecosystem Exchange')
+ nee.setncattr('comment','Positive values are a flux from the biosphere to the atmosphere')
+ reco.setncattr('unit','micromol m-2 s-1')
+ reco.setncattr('long_name','Total Ecosystem Respiration')
+ reco.setncattr('comment','Positive values are a flux from the biosphere to the atmosphere')
+
+ # -- Set metadata
+ # x.setncattr('creation_date',datetime.datetime.now().strftime('%Y-%m-%d %H:%M:%S'))
+ x.setncattr('release_note','File created by Linda Kooijmans (Wageningen University)')
+ x.setncattr('created','September, 2020')
+
+ # -- Close file
+ x.close()
+
+ print(newfiledir+" created")
diff --git a/preprocess/gpcp_regrid.f90 b/preprocess/gpcp_regrid.f90
new file mode 100644
index 0000000000000000000000000000000000000000..89902c0254a3297e933d1f6b2e392b249baaeba6
--- /dev/null
+++ b/preprocess/gpcp_regrid.f90
@@ -0,0 +1,291 @@
+!Program to redo longitudes of GPCP
+! to go from -180 to 180, and
+! to create monthly totals rather than month means, and
+! to regrid GPCP to weather data resolution.
+!
+!Use the makefile in this directory
+!>make gpcp_regrid (NC=3 for netcdf3)
+!
+!kdhaynes, 01/2018
+!
+program gpcp_regrid
+
+use netcdf
+implicit none
+
+character*180, parameter :: & !initial GPCP file
+ infile='/scratch/shared/erikvs/precip.mon.mean.nc'
+character*180, parameter :: & !regridded GPCP file
+ outfile='/scratch/shared/erikvs/gpcp/gpcp_0.625dx0.5d_tot.nc'
+character*180, parameter :: & !regrid file
+ regridfile='/scratch/shared/erikvs/merra_2018_proc/merra_201908.nc'
+
+integer, parameter :: gpcpyrstart=1979
+real, parameter :: badval = -9999.
+integer, parameter :: maxng=4
+
+!!!Netcdf variables
+integer :: status
+integer :: ncid,ncid2,dimid,varid
+integer :: nlatdid, nlondid, ntimedid
+integer :: latid, lonid, timeid
+integer :: precipid
+character*20 :: dimname
+
+!!!GPCP variables
+integer :: nlong, nlatg, ntime
+real, dimension(:), allocatable :: longpcpin, longpcp, latgpcp
+real, dimension(:,:,:), allocatable :: gpcpin, gpcpall, gpcpout
+real*8, dimension(:,:), allocatable :: areagg
+
+!!!Regrid variables
+integer :: nlon, nlat
+real, dimension(:), allocatable :: lon, lat
+real*8, dimension(:,:), allocatable :: areag
+
+!!!Areal variables
+integer, dimension(:,:), allocatable :: ngmin
+integer, dimension(:,:,:), allocatable :: refiin,refjin
+real*8, dimension(:), allocatable :: arlonin, arlatin
+real*8, dimension(:), allocatable :: arlonout, arlatout
+real*8, dimension(:,:,:), allocatable :: contribin
+logical :: regridup
+
+!!!Time variables
+real, dimension(:), allocatable :: time
+
+!!!Local variables
+integer :: i,j,ii,jj
+integer :: yrref, monref
+integer :: startref, lonref
+integer :: numatts, att
+character(len=30) :: attname
+
+integer :: dayspermon(12)
+real :: radius
+real*8 :: pi
+
+!------------------
+!Set local variables
+data dayspermon/31,28,31,30,31,30,31,31,30,31,30,31/
+pi = acos(-1.0)
+radius = 6371000.
+
+!------------------
+!Get the GPCP data
+print*,''
+print('(a)'),'GPCP File Information: '
+print('(a,a)'), ' ',trim(infile)
+status = nf90_open( trim(infile), nf90_nowrite, ncid )
+
+status = nf90_inq_dimid(ncid, 'lon', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlong)
+status = nf90_inq_dimid(ncid, 'lat', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlatg)
+status = nf90_inq_dimid(ncid, 'time', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, ntime)
+
+allocate(longpcpin(nlong))
+allocate(longpcp(nlong), latgpcp(nlatg))
+status = nf90_inq_varid(ncid, 'lon', varid )
+status = nf90_get_var(ncid, varid, longpcpin )
+status = nf90_inq_varid(ncid, 'lat', varid )
+status = nf90_get_var(ncid, varid, latgpcp )
+
+allocate(gpcpin(nlong,nlatg,ntime))
+allocate(gpcpall(nlong,nlatg,ntime))
+status = nf90_inq_varid(ncid, 'precip', varid )
+status = nf90_get_var(ncid, varid, gpcpin )
+status = nf90_close(ncid)
+where(gpcpin .lt. 0.) gpcpin=0.
+
+!....fix GPCP longitude
+IF (maxval(longpcpin) .GT. 180.) THEN
+ startref=0
+ do i=1,nlong
+ if ((longpcpin(i) .gt. 180.) .and. &
+ (startref .eq. 0)) then
+ startref = i
+ endif
+ enddo
+
+ lonref = startref
+ do i=1,nlong
+ longpcp(i) = longpcpin(lonref)
+ if (longpcp(i) .gt. 180.) then
+ longpcp(i) = longpcp(i) - 360.
+ endif
+ gpcpall(i,:,:) = gpcpin(lonref,:,:)
+ lonref = lonref + 1
+ if (lonref .gt. nlong) lonref=1
+ enddo
+
+ print*,' Reversed Lon (min/max): ',minval(longpcp),maxval(longpcp)
+ print*,' Precip (min/max in mm/day): ',minval(gpcpall),maxval(gpcpall)
+ELSE
+ longpcp=longpcpin
+ gpcpall=gpcpin
+ENDIF
+IF (maxval(longpcp) .GT. 180.) THEN
+ print('(a)'),'ERROR CONVERTING LON TO -180 TO 180'
+ RETURN
+ENDIF
+
+!....get GPCP time
+allocate(time(ntime))
+monref=1
+yrref=gpcpyrstart
+do i=1,ntime
+ time(i) = yrref + (monref-0.5)/12.
+ gpcpall(:,:,i) = gpcpall(:,:,i)*dayspermon(monref)
+
+ monref=monref+1
+ if (monref .eq. 13) then
+ monref = 1
+ yrref=yrref+1
+ endif
+enddo
+
+!-----------------------
+!Get regrid information
+print*,''
+print('(a)'),'Regrid File Information: '
+print('(a,a)'), ' ',trim(regridfile)
+status = nf90_open( trim(regridfile), nf90_nowrite, ncid )
+if (status .ne. nf90_noerr) then
+ print*,'Error Opening File. Stopping.'
+ stop
+endif
+
+status = nf90_inq_dimid(ncid, 'lon', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlon)
+status = nf90_inq_dimid(ncid, 'lat', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlat)
+
+allocate(lon(nlon),lat(nlat))
+status = nf90_inq_varid(ncid, 'longitude', varid )
+status = nf90_get_var(ncid, varid, lon )
+status = nf90_inq_varid(ncid, 'latitude', varid )
+status = nf90_get_var(ncid, varid, lat )
+status = nf90_close(ncid)
+
+regridup = .true.
+IF (nlon .GT. nlong) regridup = .false.
+
+!--------------------------------
+!Allocate the areal arrays
+allocate(arlonin(nlong),arlatin(nlatg))
+allocate(arlonout(nlon),arlatout(nlat))
+allocate(areagg(nlong,nlatg))
+allocate(areag(nlon,nlat))
+
+allocate(gpcpout(nlon,nlat,ntime))
+gpcpout = 0.
+
+!-------------------------------
+!Regrid the precip data
+IF (regridup) THEN
+ allocate(ngmin(nlong,nlatg))
+ allocate(refiin(nlong,nlatg,maxng), &
+ refjin(nlong,nlatg,maxng))
+ allocate(contribin(nlong,nlatg,maxng))
+
+ call regrid_upinfo( &
+ nlong, nlatg, &
+ nlon, nlat, maxng, &
+ longpcp, latgpcp, lon, lat, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, areagg, areag)
+
+ call regrid_varup( &
+ gpcpyrstart, &
+ nlong, nlatg, &
+ nlon,nlat, &
+ ntime, maxng, &
+ lon, lat, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, areag, &
+ gpcpall, gpcpout)
+
+ELSE
+ allocate(ngmin(nlon,nlat))
+ allocate(refiin(nlon,nlat,maxng), &
+ refjin(nlon,nlat,maxng))
+ allocate(contribin(nlon,nlat,maxng))
+
+ call regrid_downinfo( &
+ nlong, nlatg, &
+ nlon, nlat, maxng, &
+ longpcp, latgpcp, lon, lat, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, areagg, areag)
+
+ call regrid_vardown( &
+ gpcpyrstart, &
+ nlong, nlatg, ntime, &
+ nlon, nlat, maxng, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, gpcpall, gpcpout)
+
+ENDIF
+
+
+
+!!!Write out file
+print('(a)')
+print('(a)'), 'Writing file: '
+print('(2a)'),' ', trim(outfile)
+status = nf90_create( trim(outfile), nf90_clobber, ncid)
+
+!...copy global attributes....
+status = nf90_open( trim(infile), nf90_nowrite, ncid2 )
+status = nf90_inquire(ncid2, nAttributes=numatts)
+do att=1,numatts
+ status = nf90_inq_attname(ncid2,nf90_global,att,attname)
+ status = nf90_copy_att(ncid2,nf90_global,trim(attname),ncid,nf90_global)
+enddo
+status = nf90_close(ncid2)
+
+!...dimensions...
+status = nf90_def_dim( ncid, 'lon', nlon, nlondid )
+status = nf90_def_dim( ncid, 'lat', nlat, nlatdid )
+status = nf90_def_dim( ncid, 'time', ntime, ntimedid )
+
+!...variables...
+status = nf90_def_var( ncid,'lon',nf90_float,(/nlondid/), lonid )
+status = nf90_put_att( ncid, lonid, 'units','degrees_north')
+
+status = nf90_def_var( ncid,'lat',nf90_float,(/nlatdid/), latid )
+status = nf90_put_att( ncid, latid, 'units','degrees_east')
+
+status = nf90_def_var( ncid,'time',nf90_float,(/ntimedid/), timeid )
+status = nf90_put_att( ncid, timeid, 'units','years since 0000-00-00')
+
+status = nf90_def_var( ncid,'precip',nf90_float,(/nlondid,nlatdid,ntimedid/), precipid )
+status = nf90_put_att( ncid, precipid, 'long_name', &
+ 'Total Month Precipitation' )
+status = nf90_put_att( ncid, precipid, 'units', 'mm/month')
+status = nf90_put_att( ncid, precipid, 'dataset', &
+ 'GPCP Version 2.3 Combined Precipitation Dataset')
+
+!...take file out of define mode, into data mode
+status = nf90_enddef( ncid )
+
+!...load the variables...
+status = nf90_put_var( ncid, lonid, lon )
+status = nf90_put_var( ncid, latid, lat )
+status = nf90_put_var( ncid, timeid, time )
+status = nf90_put_var( ncid, precipid, gpcpout)
+
+!...close the file
+status = nf90_close( ncid )
+
+print*,''
+print('(a)'),'Finished Processing.'
+print*,''
+
+end program gpcp_regrid
diff --git a/preprocess/gpcp_tdown.f90 b/preprocess/gpcp_tdown.f90
new file mode 100644
index 0000000000000000000000000000000000000000..8b9de546094317fdaa23d35a4ce1f9ac349a76d3
--- /dev/null
+++ b/preprocess/gpcp_tdown.f90
@@ -0,0 +1,378 @@
+!===================================
+! Subroutine to get areal information
+! for regridding to a smaller grid.
+! (Downscaling...)
+!
+! kdhaynes, 06/16
+
+subroutine regrid_downinfo( &
+ nlonin, nlatin, &
+ nlonout, nlatout, maxng, &
+ lonin, latin, lonout, latout, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, &
+ arlonout, arlatout, &
+ contribin, areagin, areagout)
+
+implicit none
+
+!...parameters
+logical, parameter :: print_area=.true.
+real, parameter :: radius=6371000
+real :: pi
+
+!...input variables
+integer, intent(in) :: nlonin, nlatin
+integer, intent(in) :: nlonout, nlatout
+integer, intent(in) :: maxng
+real, dimension(nlonin), intent(in) :: lonin
+real, dimension(nlatin), intent(in) :: latin
+real, dimension(nlonout), intent(in) :: lonout
+real, dimension(nlatout), intent(in) :: latout
+integer, dimension(nlonout,nlatout), intent(inout) :: ngmin
+integer, dimension(nlonout,nlatout,maxng), intent(inout) :: refiin, refjin
+real*8, dimension(nlonin), intent(inout) :: arlonin
+real*8, dimension(nlatin), intent(inout) :: arlatin
+real*8, dimension(nlonout), intent(inout) :: arlonout
+real*8, dimension(nlatout), intent(inout) :: arlatout
+real*8, dimension(nlonout,nlatout,maxng), intent(inout) :: contribin
+real*8, dimension(nlonin,nlatin), intent(inout) :: areagin
+real*8, dimension(nlonout,nlatout), intent(inout) :: areagout
+
+!...local variables
+real :: deltalonin, deltalatin
+real*8 :: areatotin
+real :: loninWt, loninEt
+real, dimension(nlonin) :: loninloc, loninE, loninW
+real, dimension(nlatin) :: latinN, latinS
+
+real :: deltalonout, deltalatout
+real, dimension(nlonout) :: lonoutE, lonoutW
+real, dimension(nlatout) :: latoutN, latoutS
+
+real*8 :: latsr, latnr, lonwr, loner
+real*8 :: londiff,sinlatdiff
+
+!...misc variables
+integer :: i,j,ii,jj
+integer :: irefin, jrefin
+real*8 :: temparea
+
+!----------------------------------------
+pi = acos(-1.0)
+ngmin(:,:) = 0
+refiin(:,:,:) = 0
+refjin(:,:,:) = 0
+
+!Calculate areal variables for original grid
+deltalonin=(lonin(3)-lonin(2))/2.
+deltalatin=(latin(3)-latin(2))/2.
+
+do i=1,nlonin
+ if (lonin(i) .gt. 180.) then
+ loninloc(i) = lonin(i) - 360.
+ else
+ loninloc(i) = lonin(i)
+ endif
+ loninE(i)=loninloc(i)+deltalonin
+ loninW(i)=loninloc(i)-deltalonin
+ arlonin(i)=(loninE(i)-loninW(i))/360.
+enddo
+arlonin = arlonin*2*pi*radius*radius
+
+do j=1,nlatin
+ if (j .eq. 1) then
+ latinS(j) = -90.
+ latinN(j) = (latin(j+1) + latin(j))*0.5
+ elseif (j .eq. 2) then
+ latinS(j) = (latin(j-1) + latin(j))*0.5
+ latinN(j) = latin(j) + deltalatin
+ elseif (j .eq. nlatin-1) then
+ latinS(j) = latin(j) - deltalatin
+ latinN(j) = (latin(j) + latin(j+1))*0.5
+ elseif (j .eq. nlatin) then
+ latinS(j) = (latin(j-1) + latin(j))*0.5
+ latinN(j) = 90.
+ else
+ latinS(j) = latin(j) - deltalatin
+ latinN(j) = latin(j) + deltalatin
+ endif
+
+ arlatin(j) = -sin(pi*latinS(j)/180.) + &
+ sin(pi*latinN(j)/180.)
+enddo
+
+areatotin=0.
+do ii=1,nlonin
+ do jj=1,nlatin
+ latsr=latinS(jj)*pi/180.
+ latnr=latinN(jj)*pi/180.
+ lonwr=loninW(ii)*pi/180.
+ loner=loninE(ii)*pi/180.
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+ areagin(ii,jj) = radius*radius*londiff*sinlatdiff
+ areatotin = areatotin + areagin(ii,jj)
+ enddo !jj
+enddo !ii
+
+!Calculate areal variables for new grid
+deltalonout=(lonout(3)-lonout(2))/2.
+deltalatout=(latout(3)-latout(2))/2.
+
+do i=1,nlonout
+ lonoutE(i)=lonout(i)+deltalonout
+ lonoutW(i)=lonout(i)-deltalonout
+ arlonout(i)=(lonoutE(i)-lonoutW(i))/360.
+enddo
+arlonout = arlonout*2*pi*radius*radius
+
+do j=1,nlatout
+ latoutS(j) = latout(j) - deltalatout
+ latoutN(j) = latout(j) + deltalatout
+
+ IF (latoutS(j) .lt. -90.) THEN
+ latoutS(j) = -90.
+ ENDIF
+
+ IF (latoutN(j) .gt. 90.) THEN
+ latoutN(j) = 90.
+ ENDIF
+
+ arlatout(j) = -sin(pi*latoutS(j)/180.) + &
+ sin(pi*latoutN(j)/180.)
+enddo
+
+do ii=1,nlonout
+ do jj=1,nlatout
+ latsr=latoutS(jj)*pi/180.
+ latnr=latoutN(jj)*pi/180.
+ lonwr=lonoutW(ii)*pi/180.
+ loner=lonoutE(ii)*pi/180.
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+
+ areagout(ii,jj) = radius*radius*londiff*sinlatdiff
+ enddo !jj
+enddo !ii
+
+!Area calculations
+ngmin(:,:)=0
+do ii=1,nlonout
+ do jj=1,nlatout
+
+ do i=1,nlonin
+ loninWt = loninW(i)
+ loninEt = loninE(i)
+ if ((loninW(i) .le. 180.) .and. (loninE(i) .ge. 180.)) then
+ if (lonout(ii) .lt. 0.) then
+ loninWt = loninW(i) - 360.
+ loninEt = loninE(i) - 360.
+ endif
+ endif
+ do j=1,nlatin
+ IF ((lonoutE(ii) .GT. loninWt) .AND. &
+ (lonoutW(ii) .LT. loninEt) .AND. &
+ (latoutN(jj) .GT. latinS(j)) .AND. &
+ (latoutS(jj) .LT. latinN(j))) THEN
+ latsr=MAX(latoutS(jj)*pi/180.,latinS(j)*pi/180.)
+ latnr=MIN(latoutN(jj)*pi/180.,latinN(j)*pi/180.)
+ lonwr=MAX(lonoutW(ii)*pi/180.,loninWt*pi/180.)
+ loner=MIN(lonoutE(ii)*pi/180.,loninEt*pi/180.)
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+ temparea = radius*radius*londiff*sinlatdiff
+ IF (temparea .LT. 0.) THEN
+ print*,'Negative Area: ',temparea
+ print*,' (loninE,lonoutE,loninW,lonoutW): ', &
+ loninEt,lonoutE(ii),loninWt,lonoutW(ii),londiff
+ print*,' (latinS,latoutS,latinN,latoutN): ', &
+ latinS(j),latoutS(jj),latinN(j),latoutN(jj),sinlatdiff
+ ENDIF
+
+ ngmin(ii,jj) = ngmin(ii,jj) + 1
+ !print*,'Lon In: ',loninWt,loninEt
+ !print*,'Lon Out: ',lonoutW(ii),lonoutE(ii)
+ !print*,'Lat In: ',latinS(j),latinN(j)
+ !print*,'Lat Out: ',latoutS(jj),latoutN(jj)
+ !print*,'Grid Contributions: ',ngmin(ii,jj)
+
+ IF (ngmin(ii,jj) .GT. maxng) THEN
+ print('(a,3i6)'),'Too many grid cell contributors: ', &
+ ngmin(ii,jj),ii,jj
+ print*,'Longitudes: ',lonout(ii),lonoutW(ii),lonoutE(ii)
+ print*,'Latitudes: ',latout(jj),latoutS(jj),latoutN(jj)
+ stop
+ ENDIF
+ irefin = i
+ jrefin = j
+
+ refiin(ii,jj,ngmin(ii,jj)) = irefin
+ refjin(ii,jj,ngmin(ii,jj)) = jrefin
+ contribin(ii,jj,ngmin(ii,jj)) = temparea/areagout(ii,jj)
+ ENDIF
+ ENDDO !jj
+ ENDDO !ii
+
+ ENDDO !j
+ENDDO !i
+
+!ratio=areatotin/sum(areagout)
+!areagout=areagout*ratio
+!ratio=areatotin/sum(contribin)
+!contribin=contribin*ratio
+
+!Check areas
+if (print_area) then
+ print('(a)'), ' Area should be: 0.51E+15 m2'
+ print('(a)'), ' Area used for calculation:'
+ print('(2(a,E15.8))'), ' Orig = ', &
+ sum(areagin),' ',sum(arlonin)*sum(arlatin)
+ print('(2(a,E15.8))'), ' New = ', &
+ sum(areagout),' ',sum(arlonout)*sum(arlatout)
+endif
+
+!Check to make sure all new grid points
+! have a contributor
+do ii=1,nlonout
+ do jj=1,nlatout
+ if ((sum(contribin(ii,jj,:)) .le. 0.99) .or. &
+ (sum(contribin(ii,jj,:)) .gt. 1.01)) then
+ print*,'Bad Original Contribution: ',ii,jj,sum(contribin(ii,jj,:))
+ STOP
+ endif
+ enddo
+enddo
+
+end subroutine regrid_downinfo
+
+
+
+!===================================
+! Subroutine to output regrid a variable.
+!
+! kdhaynes, 06/16
+
+subroutine regrid_vardown( gpcpyrstart, &
+ nlonin, nlatin, ntime, &
+ nlonout, nlatout, maxng, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, varin, varout)
+
+implicit none
+
+!parameters
+real, parameter :: earth_sfc_area = 5.1E14
+logical, parameter :: print_sums=.true.
+character(len=3), dimension(12), parameter :: &
+ monname = ['Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec']
+
+!input variables
+integer, intent(in) :: gpcpyrstart
+integer, intent(in) :: nlonin, nlatin, ntime
+integer, intent(in) :: nlonout, nlatout, maxng
+
+integer, dimension(nlonout,nlatout), intent(in) :: ngmin
+integer, dimension(nlonout,nlatout,maxng), intent(in) :: refiin, refjin
+
+real*8, dimension(nlonin), intent(in) :: arlonin
+real*8, dimension(nlatin), intent(in) :: arlatin
+real*8, dimension(nlonout), intent(in) :: arlonout
+real*8, dimension(nlatout), intent(in) :: arlatout
+real*8, dimension(nlonout,nlatout,maxng), intent(in) :: contribin
+
+real, dimension(nlonin,nlatin,ntime), intent(in) :: varin
+real, dimension(nlonout,nlatout,ntime), intent(inout) :: varout
+
+!data variables
+real, dimension(nlonin,nlatin,ntime) :: varinloc
+
+!processing area variables
+real*8 :: ratio
+real*8 :: sumvarin, sumvarout1, sumvarout2
+
+!local variables
+integer :: i,j,k,l,t
+integer :: irefin, jrefin
+integer :: monref, yrref
+
+!-------------------------
+!regrid
+monref = 1
+yrref = gpcpyrstart
+varout = 0.0
+
+do t=1,ntime
+ do i=1,nlonout
+ do j=1,nlatout
+ do l=1,ngmin(i,j)
+ irefin=refiin(i,j,l)
+ jrefin=refjin(i,j,l)
+
+ varout(i,j,t) = varout(i,j,t) + &
+ varin(irefin,jrefin,t) * &
+ real(contribin(i,j,l))
+ enddo !l=1,ngmin
+ enddo !j=1,nlatin
+ enddo !i=1,nlonin
+
+ !calculate global totals
+ sumvarin=0.0
+ do i=1,nlonin
+ do j=1,nlatin
+ sumvarin = sumvarin + &
+ varin(i,j,t)*arlonin(i)*arlatin(j)
+ enddo !j=1,nlatin
+ enddo !i=1,nlonin
+
+ sumvarout1=0.0
+ do i=1,nlonout
+ do j=1,nlatout
+ sumvarout1 = sumvarout1 + &
+ varout(i,j,t)*arlonout(i)*arlatout(j)
+ enddo !j=1,nlatout
+ enddo !i=1,nlonout
+
+ !rescale
+ if (sumvarout1 .ne. 0.) then
+ ratio=sumvarin/sumvarout1
+ else
+ ratio=1.
+ endif
+ varout(:,:,t)=varout(:,:,t)*real(ratio)
+
+ !recheck
+ sumvarout2=0.0
+ do i=1,nlonout
+ do j=1,nlatout
+ sumvarout2 = sumvarout2 + &
+ (varout(i,j,t))*arlonout(i)*arlatout(j)
+ enddo !j=1,nlatout
+ enddo !i=1,nlonout
+
+ if (print_sums) then
+ print*,''
+ print('(a,a,i5)'), &
+ 'Precipitation for ',monname(monref),yrref
+
+ print*,' Orig Max/Min Precip (mm/mon) : ', &
+ maxval(varin(:,:,t)), &
+ minval(varin(:,:,t))
+ print*,' Regrid Max/Min Precip (mm/mon): ', &
+ maxval(varout(:,:,t)), &
+ minval(varout(:,:,t))
+ print*,' Totals (global mean in mm/mon)'
+ print('(a,f15.8)'),' In : ',sumvarin/earth_sfc_area
+ print('(a,f15.8)'),' Out: ',sumvarout2/earth_sfc_area
+ endif
+
+ monref = monref + 1
+ if (monref .eq. 13) then
+ monref = 1
+ yrref = yrref + 1
+ endif
+enddo !t=1,ntime
+
+end subroutine regrid_vardown
diff --git a/preprocess/gpcp_tup.f90 b/preprocess/gpcp_tup.f90
new file mode 100644
index 0000000000000000000000000000000000000000..fd83c98c73e7e2c73e65b539725ad42ec7e2e39f
--- /dev/null
+++ b/preprocess/gpcp_tup.f90
@@ -0,0 +1,352 @@
+!===================================
+! Subroutine to get areal information
+! for regridding to a coarser grid.
+! (Upscaling...)
+!
+! kdhaynes, 10/17
+
+subroutine regrid_upinfo( &
+ nlonin, nlatin, &
+ nlonout, nlatout, maxng, &
+ lonin, latin, lonout, latout, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, areagin, areagout)
+
+implicit none
+
+!...parameters
+logical, parameter :: print_area=.false.
+real, parameter :: radius=6371000
+real :: pi
+
+!...input variables
+integer, intent(in) :: nlonin, nlatin
+integer, intent(in) :: nlonout, nlatout
+integer, intent(in) :: maxng
+real, dimension(nlonin), intent(in) :: lonin
+real, dimension(nlatin), intent(in) :: latin
+real, dimension(nlonout), intent(in) :: lonout
+real, dimension(nlatout), intent(in) :: latout
+
+integer, dimension(nlonin,nlatin), intent(inout) :: ngmin
+integer, dimension(nlonin,nlatin,maxng), intent(inout) :: refiin, refjin
+real*8, dimension(nlonin), intent(inout) :: arlonin
+real*8, dimension(nlatin), intent(inout) :: arlatin
+real*8, dimension(nlonout), intent(inout) :: arlonout
+real*8, dimension(nlatout), intent(inout) :: arlatout
+real*8, dimension(nlonin,nlatin,maxng), intent(inout) :: contribin
+real*8, dimension(nlonin,nlatin), intent(inout) :: areagin
+real*8, dimension(nlonout,nlatout), intent(inout) :: areagout
+
+!...local variables
+real :: deltalonin, deltalatin
+real*8 :: areatotin
+real, dimension(nlonin) :: loninE, loninW
+real, dimension(nlatin) :: latinN, latinS
+
+real :: deltalonout, deltalatout
+real, dimension(nlonout+1) :: lonoutEe, lonoutWe
+real, dimension(nlatout) :: latoutN, latoutS
+
+real*8 :: latsr, latnr, lonwr, loner
+real*8 :: londiff,sinlatdiff
+
+!...misc variables
+integer :: i,j,ii,jj
+integer :: irefout, jrefout
+real*8 :: ratio, temparea
+
+!----------------------------------------
+pi = acos(-1.0)
+ngmin(:,:) = 0
+refiin(:,:,:) = 0
+refjin(:,:,:) = 0
+
+!Calculate areal variables for original grid
+deltalonin=(lonin(3)-lonin(2))/2.
+deltalatin=(latin(3)-latin(2))/2.
+
+do i=1,nlonin
+ loninE(i)=lonin(i)+deltalonin
+ loninW(i)=lonin(i)-deltalonin
+ arlonin(i)=(loninE(i)-loninW(i))/360.
+enddo
+arlonin = arlonin*2*pi*radius*radius/1.e15
+
+do j=1,nlatin
+ latinS(j) = latin(j) - deltalatin
+ latinN(j) = latin(j) + deltalatin
+
+ IF (latinS(j) .lt. -90.) THEN
+ latinS(j) = -90.
+ ENDIF
+
+ IF (latinN(j) .gt. 90.) THEN
+ latinN(j) = 90.
+ ENDIF
+
+ arlatin(j) = -sin(pi*latinS(j)/180.) + &
+ sin(pi*latinN(j)/180.)
+enddo
+
+areatotin=0.
+do ii=1,nlonin
+ do jj=1,nlatin
+ latsr=latinS(jj)*pi/180.
+ latnr=latinN(jj)*pi/180.
+ lonwr=loninW(ii)*pi/180.
+ loner=loninE(ii)*pi/180.
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+ areagin(ii,jj) = radius*radius*londiff*sinlatdiff
+ areatotin = areatotin + areagin(ii,jj)
+ enddo !jj
+enddo !ii
+
+!Calculate areal variables for new grid
+deltalonout=(lonout(3)-lonout(2))/2.
+deltalatout=(latout(3)-latout(2))/2.
+
+do i=1,nlonout
+ lonoutEe(i)=lonout(i)+deltalonout
+ lonoutWe(i)=lonout(i)-deltalonout
+ arlonout(i)=(lonoutEe(i)-lonoutWe(i))/360.
+enddo
+lonoutEe(nlonout+1)=lonout(nlonout)+3*deltalonout
+lonoutWe(nlonout+1)=lonout(nlonout)+2*deltalonout
+arlonout = arlonout*2*pi*radius*radius/1.e15
+
+do j=1,nlatout
+ latoutS(j) = latout(j) - deltalatout
+ latoutN(j) = latout(j) + deltalatout
+
+ IF (latoutS(j) .lt. -90.) THEN
+ latoutS(j) = -90.
+ ENDIF
+
+ IF (latoutN(j) .gt. 90.) THEN
+ latoutN(j) = 90.
+ ENDIF
+
+ arlatout(j) = -sin(pi*latoutS(j)/180.) + &
+ sin(pi*latoutN(j)/180.)
+enddo
+
+do ii=1,nlonout+1
+ do jj=1,nlatout
+ latsr=latoutS(jj)*pi/180.
+ latnr=latoutN(jj)*pi/180.
+ lonwr=lonoutWe(ii)*pi/180.
+ loner=lonoutEe(ii)*pi/180.
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+
+ IF (ii .LT. nlonout+1) THEN
+ areagout(ii,jj) = radius*radius*londiff*sinlatdiff
+ ENDIF
+ enddo !jj
+enddo !ii
+
+!Area calculations
+ngmin(:,:)=0
+do i=1,nlonin
+ do j=1,nlatin
+
+ do ii=1,nlonout+1
+ do jj=1,nlatout
+ IF ((loninE(i) .GT. lonoutWe(ii)) .AND. &
+ (loninW(i) .LT. lonoutEe(ii)) .AND. &
+ (latinN(j) .GT. latoutS(jj)) .AND. &
+ (latinS(j) .LT. latoutN(jj))) THEN
+ latsr=MAX(latoutS(jj)*pi/180.,latinS(j)*pi/180.)
+ latnr=MIN(latoutN(jj)*pi/180.,latinN(j)*pi/180.)
+ lonwr=MAX(lonoutWe(ii)*pi/180.,loninW(i)*pi/180.)
+ loner=MIN(lonoutEe(ii)*pi/180.,loninE(i)*pi/180.)
+ londiff=loner-lonwr
+ sinlatdiff=sin(latnr)-sin(latsr)
+ temparea = radius*radius*londiff*sinlatdiff
+ IF (temparea .LT. 0.) THEN
+ print*,'Negative Area: ',temparea
+ print*,' (loninE,lonoutE,loninW,lonoutW): ', &
+ loninE(i),lonoutEe(ii),loninW(i),lonoutWe(ii),londiff
+ print*,' (latinS,latoutS,latinN,latoutN): ', &
+ latinS(j),latoutS(jj),latinN(j),latoutN(jj),sinlatdiff
+ ENDIF
+
+ ngmin(i,j) = ngmin(i,j) + 1
+ IF (ngmin(i,j) .GT. maxng) THEN
+ print*,'Too many original grid cell contributors: ', &
+ ngmin(i,j),i,j,lonin(i),latin(i)
+ stop
+ ENDIF
+ IF (ii .EQ. nlonout+1) THEN
+ irefout = 1
+ ELSE
+ irefout = ii
+ ENDIF
+ jrefout = jj
+
+ refiin(i,j,ngmin(i,j)) = irefout
+ refjin(i,j,ngmin(i,j)) = jrefout
+ contribin(i,j,ngmin(i,j)) = temparea
+
+ ENDIF
+ ENDDO !jj
+ ENDDO !ii
+
+ ENDDO !j
+ENDDO !i
+
+!Rescale areas
+ratio=areatotin/sum(areagout)
+areagout=areagout*ratio
+ratio=areatotin/sum(contribin)
+contribin=contribin*ratio
+
+!Check areas
+if (print_area) then
+ print('(a)'), ' Area should be: 0.50990436E+15 m2'
+ print('(a)'), ' Area used for calculation:'
+ print('(a,E15.8)'), ' Orig = ',sum(areagin)
+ print('(a,E15.8)'), ' New = ',sum(areagout)
+endif
+
+
+end subroutine regrid_upinfo
+
+
+!===================================
+! Subroutine to output regridded data.
+!
+! kdhaynes, 01/2018
+
+subroutine regrid_varup( gpcpyrstart, &
+ nlonin, nlatin, &
+ nlonout, nlatout, &
+ ntime, maxng, &
+ lonout, latout, &
+ ngmin, refiin, refjin, &
+ arlonin, arlatin, arlonout, arlatout, &
+ contribin, areagout, &
+ datain, dataout)
+
+use netcdf
+implicit none
+
+!input variables
+integer, intent(in) :: gpcpyrstart
+integer, intent(in) :: nlonin, nlatin
+integer, intent(in) :: nlonout, nlatout
+integer, intent(in) :: maxng, ntime
+real, dimension(nlonout), intent(in) :: lonout
+real, dimension(nlatout), intent(in) :: latout
+
+integer, dimension(nlonin,nlatin), intent(in) :: ngmin
+integer, dimension(nlonin,nlatin,maxng), intent(in) :: refiin, refjin
+real*8, dimension(nlonin), intent(in) :: arlonin
+real*8, dimension(nlatin), intent(in) :: arlatin
+real*8, dimension(nlonout), intent(in) :: arlonout
+real*8, dimension(nlatout), intent(in) :: arlatout
+real*8, dimension(nlonin,nlatin,maxng), intent(in) :: contribin
+real*8, dimension(nlonout,nlatout), intent(in) :: areagout
+
+real, dimension(nlonin,nlatin,ntime), intent(in) :: datain
+real, dimension(nlonout,nlatout,ntime), intent(inout) :: dataout
+
+!data variables
+real*8 :: ratio
+real*8 :: sumvarin, sumvarout1, sumvarout2
+
+!local variables
+integer :: i,j,l,t
+integer :: irefout, jrefout
+integer :: monref, yrref
+
+!parameters
+real, parameter :: earth_sfc_area = 5.1E14
+logical, parameter :: print_sums=.true.
+character(len=3), dimension(12), parameter :: &
+ monname = ['Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec']
+
+!-------------------------------------
+!Process the data
+monref = 1
+yrref = gpcpyrstart
+
+do t=1,ntime
+ do j=1,nlatin
+ do i=1,nlonin
+ do l=1,ngmin(i,j)
+ irefout=refiin(i,j,l)
+ jrefout=refjin(i,j,l)
+
+ dataout(irefout,jrefout,t) = &
+ dataout(irefout,jrefout,t) + &
+ datain(i,j,t) * &
+ real(contribin(i,j,l)/areagout(irefout,jrefout))
+ enddo !l=1,ngmin
+ enddo !i=1,nlonin
+ enddo !j=1,nlatin
+
+ !calculate global totals
+ sumvarin=0.0
+ do j=1,nlatin
+ do i=1,nlonin
+ sumvarin = sumvarin + &
+ datain(i,j,t)*arlonin(i)*arlatin(j)
+ enddo !j=1,nlatin
+ enddo !i=1,nlonin
+
+ sumvarout1=0.0
+ do j=1,nlatout
+ do i=1,nlonout
+ sumvarout1 = sumvarout1 + &
+ dataout(i,j,t)*arlonout(i)*arlatout(j)
+ enddo !i=1,nlonout
+ enddo !j=1,nlatout
+
+ !rescale
+ if (sumvarout1 .ne. 0.) then
+ ratio=sumvarin/sumvarout1
+ else
+ ratio=1.
+ endif
+ dataout(:,:,t) = dataout(:,:,t)*real(ratio)
+
+ !recheck
+ sumvarout2=0.0
+ do j=1,nlatout
+ do i=1,nlonout
+ sumvarout2 = sumvarout2 + &
+ (dataout(i,j,t))*arlonout(i)*arlatout(j)
+ enddo !i=1,nlonout
+ enddo !j=1,nlatout
+
+ if (print_sums) then
+ print*,''
+ print('(a,a,i5)'), &
+ 'Precipitation for ',monname(monref),yrref
+
+ print*,' Orig Max/Min Precip (mm/mon) : ', &
+ maxval(datain(:,:,t)), &
+ minval(datain(:,:,t))
+ print*,' Regrid Max/Min Precip (mm/mon): ', &
+ maxval(dataout(:,:,t)), &
+ minval(dataout(:,:,t))
+ print*,' Totals (global mean in mm/mon)'
+ print('(a,f15.8)'),' In : ',sumvarin/earth_sfc_area
+ print('(a,f15.8)'),' Out: ',sumvarout2/earth_sfc_area
+ endif
+
+ monref = monref + 1
+ if (monref .eq. 13) then
+ monref = 1
+ yrref = yrref + 1
+ endif
+enddo !t=1,ntime
+
+
+end subroutine regrid_varup
+
diff --git a/preprocess/merra_pullsib.f90 b/preprocess/merra_pullsib.f90
new file mode 100644
index 0000000000000000000000000000000000000000..8bdb01b0c96d69c37c68d6fbc7f18bda52e4eeaa
--- /dev/null
+++ b/preprocess/merra_pullsib.f90
@@ -0,0 +1,308 @@
+!Program to read in gridded MERRA monthly files (lonxlat),
+!and write out monthly SiB driver files (nsib).
+!
+!To compile, use:
+!>pgf90 merra_pullsib.f90 -L/usr/local/netcdf3-pgi/lib -lnetcdf -I/usr/local/netcdf3-pgi/include -o merra_pullsib
+!
+!-or- (if defined)
+!>f90nc merra_pullsib.f90
+!>f90nco merra_pullsib.f90 merra_pullsib
+!
+!>-or-
+!>make merra_pullsib
+!
+!kdhaynes, 01/2018
+!
+program merra_pullsib
+
+use netcdf
+
+implicit none
+
+!!!!! user defined variables
+integer, parameter :: startYr=2019, stopYr=2019
+integer, parameter :: startmon=8, stopmon=12
+
+character(len=100), parameter :: inputdir= &
+ '/scratch/shared/erikvs/merra_2018_proc/'
+character(len=6), parameter :: inprefix='merra_'
+
+character(len=100), parameter :: outputdir= &
+ '/scratch/shared/erikvs/merra_2018_proc/'
+character(len=24), parameter :: outprefix='merra2_0.5deg_'
+
+character(len=100), parameter :: sibfile= &
+ '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+
+!!!!! MERRA-specific parameters
+integer, parameter :: nvar = 10
+character(len=12), parameter, dimension(nvar) :: &
+ varname = ['tm ','sh ','ps ', &
+ 'spdm ','swd ','lwd ', &
+ 'lspr ','cupr ','lspr_scaled ', &
+ 'cupr_scaled ']
+character(len=3), parameter, dimension(12) :: &
+ monname = ['Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec']
+
+!input variables
+integer :: nlon, nlat, ntime
+real, dimension(:), allocatable :: longitude, latitude
+real*8, dimension(:), allocatable :: time
+integer, dimension(:), allocatable :: year, month, doy, day
+real, dimension(:), allocatable :: hour
+real, dimension(:,:,:), allocatable :: values_temp
+real, dimension(:,:,:,:), allocatable :: values
+
+!output variables
+integer :: nsib
+real, dimension(:), allocatable :: lonsib, latsib
+real, dimension(:,:), allocatable :: valuessib_temp
+real, dimension(:,:,:), allocatable :: valuessib
+
+!comparison variables
+real :: minlon, minlat
+real, dimension(:), allocatable :: londiff, latdiff
+integer, dimension(:), allocatable :: lonref, latref
+
+!netcdf variables
+integer ncid, dimid, varid, varidin(nvar)
+integer ncidsib, varidsib(nvar)
+integer status
+integer timedid, landid
+integer timeid, latid, lonid
+integer yrid, monid, doyid, dayid, hrid
+integer valuesid(nvar)
+character(len=30) :: monunit, dayunit
+
+!misc variables
+integer j,k,v
+integer mon, yr
+integer mystartmon, mystopmon
+character(len=120) :: filename
+character(len=20) :: varname_temp
+
+!---------------------------------------------------
+!Read in the SiB lat/lon information for land points
+call check ( nf90_open( trim(sibfile), nf90_nowrite, ncid ) )
+print*,''
+print('(a)'),'Getting SiB Information: '
+print('(a,a)'),' ',trim(sibfile)
+print*,''
+
+call check ( nf90_inq_dimid( ncid, 'nsib', dimid ) )
+call check ( nf90_inquire_dimension( ncid, dimid, len=nsib ) )
+
+allocate(lonsib(nsib), latsib(nsib))
+call check ( nf90_inq_varid( ncid, 'lonsib', varid ) )
+call check ( nf90_get_var( ncid, varid, lonsib ) )
+
+call check ( nf90_inq_varid( ncid, 'latsib', varid ) )
+call check ( nf90_get_var( ncid, varid, latsib ) )
+
+call check ( nf90_close(ncid) )
+
+!Process the files:
+DO yr=startyr, stopyr
+ mystartmon=1
+ mystopmon=12
+ if (yr .eq. startyr) mystartmon=startmon
+ if (yr .eq. stopyr) mystopmon=stopmon
+
+ DO mon=mystartmon, mystopmon
+
+ print('(a,a,a,i4)'), 'Processing ',monname(mon),' ',yr
+
+ !Read in MERRA lat/lon
+ write(filename,'(a,a,i4.4,i2.2,a3)') &
+ trim(inputdir), trim(inprefix), yr, mon, '.nc'
+ print('(a)'),' Opening MERRA file: '
+ print('(a,a)'),' ',trim(filename)
+
+ call check ( nf90_open( trim(filename), nf90_nowrite, ncid ) )
+
+ IF ((yr .EQ. startyr) .AND. (mon .EQ. startmon)) THEN
+ call check ( nf90_inq_dimid( ncid, 'lon', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=nlon))
+ call check ( nf90_inq_dimid( ncid, 'lat', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=nlat))
+
+ allocate(longitude(nlon),latitude(nlat))
+ call check ( nf90_inq_varid( ncid, 'longitude', varid ) )
+ call check ( nf90_get_var( ncid, varid, longitude ) )
+ call check ( nf90_inq_varid( ncid, 'latitude', varid ) )
+ call check ( nf90_get_var( ncid, varid, latitude ) )
+ ENDIF
+
+ call check ( nf90_inq_dimid( ncid, 'time', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=ntime ) )
+ allocate(time(ntime))
+ allocate(year(ntime), month(ntime), doy(ntime), &
+ day(ntime), hour(ntime))
+ call check ( nf90_inq_varid( ncid, 'time', varid ) )
+ call check ( nf90_get_var( ncid, varid, time ) )
+ call check ( nf90_inq_varid( ncid, 'year', varid ) )
+ call check ( nf90_get_var( ncid, varid, year ) )
+ call check ( nf90_inq_varid( ncid, 'month', varid ) )
+ call check ( nf90_get_var( ncid, varid, month ) )
+ call check ( nf90_inq_varid( ncid, 'doy', varid ) )
+ call check ( nf90_get_var( ncid, varid, doy))
+ call check ( nf90_inq_varid( ncid, 'day', varid ) )
+ call check ( nf90_get_var( ncid, varid, day ) )
+ call check ( nf90_inq_varid( ncid, 'hour', varid ) )
+ call check ( nf90_get_var( ncid, varid, hour ) )
+
+ allocate(values_temp(nlon,nlat,ntime))
+ allocate(values(nvar,nlon,nlat,ntime))
+ DO v=1,nvar
+ varname_temp = varname(v)
+ call check ( nf90_inq_varid( ncid, varname_temp, varidin(v) ) )
+ call check ( nf90_get_var( ncid, varidin(v), values_temp) )
+ values(v,:,:,:) = values_temp(:,:,:)
+ ENDDO
+
+ !Calculate SiB4 points and references
+ IF ((yr .EQ. startyr) .AND. (mon .EQ. startmon)) THEN
+ allocate(lonref(nsib),latref(nsib))
+ allocate(londiff(nlon),latdiff(nlat))
+
+ minlon=0.
+ minlat=0.
+ do j=1,nsib
+ londiff = abs(longitude-lonsib(j))
+ latdiff = abs(latitude-latsib(j))
+ minlon=minval(londiff)
+ minlat=minval(latdiff)
+
+ do k=1,nlon
+ if (londiff(k) .eq. minlon) lonref(j)=k
+ enddo
+ do k=1,nlat
+ if (latdiff(k) .eq. minlat) latref(j)=k
+ enddo
+ enddo !nsib
+ ENDIF
+
+ !Save the data on SiB gridpoints
+ allocate(valuessib_temp(nsib,ntime))
+ allocate(valuessib(nvar,nsib,ntime))
+ DO j=1,nsib
+ valuessib(:,j,:) = values(:,lonref(j),latref(j),:)
+ ENDDO !nsib
+
+ !Write out data to netcdf file
+ write(filename,'(a,a,I4.4,I2.2,a3)') &
+ trim(outputdir), trim(outprefix), yr, mon, '.nc'
+ print('(a)'),' Writing output file: '
+ print('(a,a)'),' ',trim(filename)
+
+ call check ( nf90_create(trim(filename), nf90_64bit_offset, ncidsib) )
+ call check ( nf90_def_dim(ncidsib, 'nsib', nsib, landid ) )
+ call check ( nf90_def_dim(ncidsib, 'time', ntime, timedid) )
+
+ call check ( nf90_def_var(ncidsib, 'lonsib', nf90_float, &
+ (/landid/), lonid) )
+ call check ( nf90_put_att(ncidsib,lonid,'long_name','Vector Longitude'))
+ call check ( nf90_put_att(ncidsib,lonid,'units','degrees_east'))
+
+ call check ( nf90_def_var(ncidsib, 'latsib', nf90_float, &
+ (/landid/), latid) )
+ call check ( nf90_put_att(ncidsib,latid,'long_name','Vector Latitude'))
+ call check ( nf90_put_att(ncidsib,latid,'units','degrees_north'))
+
+ call check ( nf90_def_var(ncidsib, 'time', nf90_double, &
+ (/timedid/), timeid) )
+ call check ( nf90_put_att(ncidsib,timeid,'long_name','Time'))
+ call check ( nf90_put_att(ncidsib,timeid,'units','years since 0000-00-00'))
+
+ call check ( nf90_def_var(ncidsib, 'year', nf90_int, &
+ (/timedid/), yrid) )
+ call check ( nf90_put_att(ncidsib,yrid,'long_name','Year'))
+ call check ( nf90_put_att(ncidsib,yrid,'units','year since 0000-00-00'))
+
+ call check ( nf90_def_var(ncidsib, 'month', nf90_int, &
+ (/timedid/), monid) )
+ write(monunit,'(a,i4,a)') &
+ 'month since ', yr, '-00-00'
+ call check ( nf90_put_att(ncidsib,monid,'long_name','Month'))
+ call check ( nf90_put_att(ncidsib,monid,'units',monunit) )
+
+ call check ( nf90_def_var(ncidsib, 'doy', nf90_int, &
+ (/timedid/), doyid) )
+ write(dayunit,'(a,i4.4,a)') &
+ 'days since ', yr, '-00-00'
+ call check ( nf90_put_att(ncidsib,doyid,'long_name','Day Of Year'))
+ call check ( nf90_put_att(ncidsib,doyid,'units',dayunit))
+
+ call check ( nf90_def_var(ncidsib, 'day', nf90_int, &
+ (/timedid/), dayid) )
+ write(dayunit,'(a,i4.4,a,i2.2,a)') &
+ 'days since ', yr, '-', mon, '-00'
+ call check ( nf90_put_att(ncidsib,dayid,'long_name','Day Of Month'))
+ call check ( nf90_put_att(ncidsib,dayid,'units',dayunit))
+
+ call check ( nf90_def_var(ncidsib, 'hour', nf90_float, &
+ (/timedid/), hrid) )
+ call check ( nf90_put_att(ncidsib,hrid,'long_name','Hour'))
+ call check ( nf90_put_att(ncidsib,hrid,'units','hour of day (GMT)'))
+
+ do j=1, nvar
+ varname_temp = varname(j)
+ call check ( nf90_def_var(ncidsib, trim(varname_temp), &
+ nf90_float, (/landid,timedid/), varidsib(j)) )
+ call check ( nf90_copy_att(ncid, varidin(j), &
+ 'long_name', ncidsib, varidsib(j)))
+ call check ( nf90_copy_att(ncid, varidin(j), &
+ 'units', ncidsib, varidsib(j)))
+ status = nf90_copy_att(ncid, varidin(j), &
+ 'title', ncidsib, varidsib(j))
+ enddo
+
+ status = nf90_enddef(ncidsib)
+
+ call check ( nf90_put_var(ncidsib, timeid, time) )
+ call check ( nf90_put_var(ncidsib, lonid, lonsib) )
+ call check ( nf90_put_var(ncidsib, latid, latsib) )
+ call check ( nf90_put_var(ncidsib, yrid, year) )
+ call check ( nf90_put_var(ncidsib, monid, month) )
+ call check ( nf90_put_var(ncidsib, doyid, doy) )
+ call check ( nf90_put_var(ncidsib, dayid, day) )
+ call check ( nf90_put_var(ncidsib, hrid, hour) )
+
+ do j=1, nvar
+ valuessib_temp(:,:) = valuessib(j,:,:)
+ call check ( nf90_put_var(ncidsib, varidsib(j), valuessib_temp) )
+ enddo
+
+ call check ( nf90_close(ncid) )
+ call check ( nf90_close(ncidsib) )
+
+ deallocate(time,year,month,doy,day,hour)
+ deallocate(values, values_temp)
+ deallocate(valuessib, valuessib_temp)
+
+ enddo !mon
+enddo !yr
+
+print('(a)'), 'Finished processing.'
+print*,''
+
+end program merra_pullsib
+
+!***********************************************************************
+!***********************************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopped."
+ endif
+
+end subroutine check
diff --git a/preprocess/merra_pullsib_auto b/preprocess/merra_pullsib_auto
new file mode 100755
index 0000000000000000000000000000000000000000..4c3e9965c9cad53ad2a83f9e7ad724afa1e08466
Binary files /dev/null and b/preprocess/merra_pullsib_auto differ
diff --git a/preprocess/merra_pullsib_auto.f90 b/preprocess/merra_pullsib_auto.f90
new file mode 100644
index 0000000000000000000000000000000000000000..a58ee9553afb7b76253d5e99a7f22604468f7bf0
--- /dev/null
+++ b/preprocess/merra_pullsib_auto.f90
@@ -0,0 +1,306 @@
+!Program to read in gridded MERRA monthly files (lonxlat),
+!and write out monthly SiB driver files (nsib).
+!
+!To compile, use:
+!>pgf90 merra_pullsib.f90 -L/usr/local/netcdf3-pgi/lib -lnetcdf -I/usr/local/netcdf3-pgi/include -o merra_pullsib
+!
+!-or- (if defined)
+!>f90nc merra_pullsib.f90
+!>f90nco merra_pullsib.f90 merra_pullsib
+!
+!>-or-
+!>make merra_pullsib
+!
+!kdhaynes, 01/2018
+!
+program merra_pullsib
+
+use netcdf
+
+implicit none
+
+!!!!! user defined variables
+integer, parameter :: startYr=2018, stopYr=2018
+integer, parameter :: startmon=1, stopmon=1
+
+character(len=100), parameter :: inputdir='/projects/0/ctdas/awoude/NRT/input/'
+character(len=6), parameter :: inprefix='merra_'
+
+character(len=100), parameter :: outputdir='/projects/0/ctdas/awoude/NRT/input/'
+character(len=24), parameter :: outprefix='merra2_0.5deg_'
+
+character(len=100), parameter :: sibfile= &
+ '/projects/0/ctdas/sib4_input/vs/sib_vs_0.5deg.nc'
+
+!!!!! MERRA-specific parameters
+integer, parameter :: nvar = 10
+character(len=12), parameter, dimension(nvar) :: &
+ varname = ['tm ','sh ','ps ', &
+ 'spdm ','swd ','lwd ', &
+ 'lspr ','cupr ','lspr_scaled ', &
+ 'cupr_scaled ']
+character(len=3), parameter, dimension(12) :: &
+ monname = ['Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec']
+
+!input variables
+integer :: nlon, nlat, ntime
+real, dimension(:), allocatable :: longitude, latitude
+real*8, dimension(:), allocatable :: time
+integer, dimension(:), allocatable :: year, month, doy, day
+real, dimension(:), allocatable :: hour
+real, dimension(:,:,:), allocatable :: values_temp
+real, dimension(:,:,:,:), allocatable :: values
+
+!output variables
+integer :: nsib
+real, dimension(:), allocatable :: lonsib, latsib
+real, dimension(:,:), allocatable :: valuessib_temp
+real, dimension(:,:,:), allocatable :: valuessib
+
+!comparison variables
+real :: minlon, minlat
+real, dimension(:), allocatable :: londiff, latdiff
+integer, dimension(:), allocatable :: lonref, latref
+
+!netcdf variables
+integer ncid, dimid, varid, varidin(nvar)
+integer ncidsib, varidsib(nvar)
+integer status
+integer timedid, landid
+integer timeid, latid, lonid
+integer yrid, monid, doyid, dayid, hrid
+integer valuesid(nvar)
+character(len=30) :: monunit, dayunit
+
+!misc variables
+integer j,k,v
+integer mon, yr
+integer mystartmon, mystopmon
+character(len=120) :: filename
+character(len=20) :: varname_temp
+
+!---------------------------------------------------
+!Read in the SiB lat/lon information for land points
+call check ( nf90_open( trim(sibfile), nf90_nowrite, ncid ) )
+print*,''
+print('(a)'),'Getting SiB Information: '
+print('(a,a)'),' ',trim(sibfile)
+print*,''
+
+call check ( nf90_inq_dimid( ncid, 'nsib', dimid ) )
+call check ( nf90_inquire_dimension( ncid, dimid, len=nsib ) )
+
+allocate(lonsib(nsib), latsib(nsib))
+call check ( nf90_inq_varid( ncid, 'lonsib', varid ) )
+call check ( nf90_get_var( ncid, varid, lonsib ) )
+
+call check ( nf90_inq_varid( ncid, 'latsib', varid ) )
+call check ( nf90_get_var( ncid, varid, latsib ) )
+
+call check ( nf90_close(ncid) )
+
+!Process the files:
+DO yr=startyr, stopyr
+ mystartmon=1
+ mystopmon=1
+ if (yr .eq. startyr) mystartmon=1
+ if (yr .eq. stopyr) mystopmon=1
+
+ DO mon=mystartmon, mystopmon
+
+ print('(a,a,a,i4)'), 'Processing ',monname(mon),' ',yr
+
+ !Read in MERRA lat/lon
+ write(filename,'(a,a,i4.4,i2.2,a3)') &
+ trim(inputdir), trim(inprefix), yr, mon, '.nc'
+ print('(a)'),' Opening MERRA file: '
+ print('(a,a)'),' ',trim(filename)
+
+ call check ( nf90_open( trim(filename), nf90_nowrite, ncid ) )
+
+ IF ((yr .EQ. startyr) .AND. (mon .EQ. startmon)) THEN
+ call check ( nf90_inq_dimid( ncid, 'lon', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=nlon))
+ call check ( nf90_inq_dimid( ncid, 'lat', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=nlat))
+
+ allocate(longitude(nlon),latitude(nlat))
+ call check ( nf90_inq_varid( ncid, 'longitude', varid ) )
+ call check ( nf90_get_var( ncid, varid, longitude ) )
+ call check ( nf90_inq_varid( ncid, 'latitude', varid ) )
+ call check ( nf90_get_var( ncid, varid, latitude ) )
+ ENDIF
+
+ call check ( nf90_inq_dimid( ncid, 'time', dimid ) )
+ call check ( nf90_inquire_dimension( ncid, dimid, len=ntime ) )
+ allocate(time(ntime))
+ allocate(year(ntime), month(ntime), doy(ntime), &
+ day(ntime), hour(ntime))
+ call check ( nf90_inq_varid( ncid, 'time', varid ) )
+ call check ( nf90_get_var( ncid, varid, time ) )
+ call check ( nf90_inq_varid( ncid, 'year', varid ) )
+ call check ( nf90_get_var( ncid, varid, year ) )
+ call check ( nf90_inq_varid( ncid, 'month', varid ) )
+ call check ( nf90_get_var( ncid, varid, month ) )
+ call check ( nf90_inq_varid( ncid, 'doy', varid ) )
+ call check ( nf90_get_var( ncid, varid, doy))
+ call check ( nf90_inq_varid( ncid, 'day', varid ) )
+ call check ( nf90_get_var( ncid, varid, day ) )
+ call check ( nf90_inq_varid( ncid, 'hour', varid ) )
+ call check ( nf90_get_var( ncid, varid, hour ) )
+
+ allocate(values_temp(nlon,nlat,ntime))
+ allocate(values(nvar,nlon,nlat,ntime))
+ DO v=1,nvar
+ varname_temp = varname(v)
+ call check ( nf90_inq_varid( ncid, varname_temp, varidin(v) ) )
+ call check ( nf90_get_var( ncid, varidin(v), values_temp) )
+ values(v,:,:,:) = values_temp(:,:,:)
+ ENDDO
+
+ !Calculate SiB4 points and references
+ IF ((yr .EQ. startyr) .AND. (mon .EQ. startmon)) THEN
+ allocate(lonref(nsib),latref(nsib))
+ allocate(londiff(nlon),latdiff(nlat))
+
+ minlon=0.
+ minlat=0.
+ do j=1,nsib
+ londiff = abs(longitude-lonsib(j))
+ latdiff = abs(latitude-latsib(j))
+ minlon=minval(londiff)
+ minlat=minval(latdiff)
+
+ do k=1,nlon
+ if (londiff(k) .eq. minlon) lonref(j)=k
+ enddo
+ do k=1,nlat
+ if (latdiff(k) .eq. minlat) latref(j)=k
+ enddo
+ enddo !nsib
+ ENDIF
+
+ !Save the data on SiB gridpoints
+ allocate(valuessib_temp(nsib,ntime))
+ allocate(valuessib(nvar,nsib,ntime))
+ DO j=1,nsib
+ valuessib(:,j,:) = values(:,lonref(j),latref(j),:)
+ ENDDO !nsib
+
+ !Write out data to netcdf file
+ write(filename,'(a,a,I4.4,I2.2,a3)') &
+ trim(outputdir), trim(outprefix), yr, mon, '.nc'
+ print('(a)'),' Writing output file: '
+ print('(a,a)'),' ',trim(filename)
+
+ call check ( nf90_create(trim(filename), nf90_64bit_offset, ncidsib) )
+ call check ( nf90_def_dim(ncidsib, 'nsib', nsib, landid ) )
+ call check ( nf90_def_dim(ncidsib, 'time', ntime, timedid) )
+
+ call check ( nf90_def_var(ncidsib, 'lonsib', nf90_float, &
+ (/landid/), lonid) )
+ call check ( nf90_put_att(ncidsib,lonid,'long_name','Vector Longitude'))
+ call check ( nf90_put_att(ncidsib,lonid,'units','degrees_east'))
+
+ call check ( nf90_def_var(ncidsib, 'latsib', nf90_float, &
+ (/landid/), latid) )
+ call check ( nf90_put_att(ncidsib,latid,'long_name','Vector Latitude'))
+ call check ( nf90_put_att(ncidsib,latid,'units','degrees_north'))
+
+ call check ( nf90_def_var(ncidsib, 'time', nf90_double, &
+ (/timedid/), timeid) )
+ call check ( nf90_put_att(ncidsib,timeid,'long_name','Time'))
+ call check ( nf90_put_att(ncidsib,timeid,'units','years since 0000-00-00'))
+
+ call check ( nf90_def_var(ncidsib, 'year', nf90_int, &
+ (/timedid/), yrid) )
+ call check ( nf90_put_att(ncidsib,yrid,'long_name','Year'))
+ call check ( nf90_put_att(ncidsib,yrid,'units','year since 0000-00-00'))
+
+ call check ( nf90_def_var(ncidsib, 'month', nf90_int, &
+ (/timedid/), monid) )
+ write(monunit,'(a,i4,a)') &
+ 'month since ', yr, '-00-00'
+ call check ( nf90_put_att(ncidsib,monid,'long_name','Month'))
+ call check ( nf90_put_att(ncidsib,monid,'units',monunit) )
+
+ call check ( nf90_def_var(ncidsib, 'doy', nf90_int, &
+ (/timedid/), doyid) )
+ write(dayunit,'(a,i4.4,a)') &
+ 'days since ', yr, '-00-00'
+ call check ( nf90_put_att(ncidsib,doyid,'long_name','Day Of Year'))
+ call check ( nf90_put_att(ncidsib,doyid,'units',dayunit))
+
+ call check ( nf90_def_var(ncidsib, 'day', nf90_int, &
+ (/timedid/), dayid) )
+ write(dayunit,'(a,i4.4,a,i2.2,a)') &
+ 'days since ', yr, '-', mon, '-00'
+ call check ( nf90_put_att(ncidsib,dayid,'long_name','Day Of Month'))
+ call check ( nf90_put_att(ncidsib,dayid,'units',dayunit))
+
+ call check ( nf90_def_var(ncidsib, 'hour', nf90_float, &
+ (/timedid/), hrid) )
+ call check ( nf90_put_att(ncidsib,hrid,'long_name','Hour'))
+ call check ( nf90_put_att(ncidsib,hrid,'units','hour of day (GMT)'))
+
+ do j=1, nvar
+ varname_temp = varname(j)
+ call check ( nf90_def_var(ncidsib, trim(varname_temp), &
+ nf90_float, (/landid,timedid/), varidsib(j)) )
+ call check ( nf90_copy_att(ncid, varidin(j), &
+ 'long_name', ncidsib, varidsib(j)))
+ call check ( nf90_copy_att(ncid, varidin(j), &
+ 'units', ncidsib, varidsib(j)))
+ status = nf90_copy_att(ncid, varidin(j), &
+ 'title', ncidsib, varidsib(j))
+ enddo
+
+ status = nf90_enddef(ncidsib)
+
+ call check ( nf90_put_var(ncidsib, timeid, time) )
+ call check ( nf90_put_var(ncidsib, lonid, lonsib) )
+ call check ( nf90_put_var(ncidsib, latid, latsib) )
+ call check ( nf90_put_var(ncidsib, yrid, year) )
+ call check ( nf90_put_var(ncidsib, monid, month) )
+ call check ( nf90_put_var(ncidsib, doyid, doy) )
+ call check ( nf90_put_var(ncidsib, dayid, day) )
+ call check ( nf90_put_var(ncidsib, hrid, hour) )
+
+ do j=1, nvar
+ valuessib_temp(:,:) = valuessib(j,:,:)
+ call check ( nf90_put_var(ncidsib, varidsib(j), valuessib_temp) )
+ enddo
+
+ call check ( nf90_close(ncid) )
+ call check ( nf90_close(ncidsib) )
+
+ deallocate(time,year,month,doy,day,hour)
+ deallocate(values, values_temp)
+ deallocate(valuessib, valuessib_temp)
+
+ enddo !mon
+enddo !yr
+
+print('(a)'), 'Finished processing.'
+print*,''
+
+end program merra_pullsib
+
+!***********************************************************************
+!***********************************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopped."
+ endif
+
+end subroutine check
diff --git a/preprocess/merra_pullsib_auto.o b/preprocess/merra_pullsib_auto.o
new file mode 100644
index 0000000000000000000000000000000000000000..5c5c669b2214ea999bb58f9791a0d06f68b0979f
Binary files /dev/null and b/preprocess/merra_pullsib_auto.o differ
diff --git a/preprocess/merra_pullvar b/preprocess/merra_pullvar
new file mode 100755
index 0000000000000000000000000000000000000000..26cbb58c8970407c756dcfacea5d4063ab07ec27
Binary files /dev/null and b/preprocess/merra_pullvar differ
diff --git a/preprocess/merra_pullvar.f90 b/preprocess/merra_pullvar.f90
new file mode 100644
index 0000000000000000000000000000000000000000..81769821cd6502b3ff978c6e138a6a95027b09c1
--- /dev/null
+++ b/preprocess/merra_pullvar.f90
@@ -0,0 +1,419 @@
+!Program to read in daily MERRA files in netcdf4,
+!and to write out gridded driver files in netcdf4,
+!including only the variables necessary for SiB.
+!
+!To compile, use:
+!>f90nc4 merra_pullvar.f90 merra_pullvar
+!
+!kdhaynes, 11/16
+program merra_pullvar
+
+use netcdf
+implicit none
+
+!!!!! user defined variables
+integer, parameter :: startYr=2019, stopYr=2019
+integer, parameter :: startMon=8, stopMon=9
+character*100, parameter :: filedir='/scratch/shared/nsmith/merra_in/'
+character*100, parameter :: outdir='/scratch/shared/nsmith/merra_proc/'
+character*20, parameter :: outprefix='merra_'
+
+!!!!! MERRA defined variables for 2/3-degree by 1/2-degree hourly data
+integer, parameter :: numtimesteps = 24
+integer, parameter :: lat = 361
+integer, parameter :: lon = 576
+integer, parameter :: startDay=1
+real, parameter :: startHr = 0.5
+
+real, parameter :: initLon = -180.0
+real, parameter :: initLat = -90.0
+
+character*30, parameter :: fname_flx = 'MERRA2_400.tavg1_2d_flx_Nx.'
+character*30, parameter :: fname_rad = 'MERRA2_400.tavg1_2d_rad_Nx.'
+character*30, parameter :: fname_slv = 'MERRA2_400.tavg1_2d_slv_Nx.'
+character*4, parameter :: suffix = '.nc4'
+
+integer, parameter :: nvar_flx = 4
+integer, parameter :: nvar_rad = 3
+integer, parameter :: nvar_slv = 5
+integer, parameter :: nvar_out = 8
+
+! file variables
+character(len=100) filename
+character(len=20), dimension(nvar_flx) :: varname_flx, units_flx
+character(len=300), dimension(nvar_flx) :: description_flx
+character(len=20), dimension(nvar_rad) :: varname_rad, units_rad
+character(len=300), dimension(nvar_rad) :: description_rad
+character(len=20), dimension(nvar_slv) :: varname_slv, units_slv
+character(len=300), dimension(nvar_slv) :: description_slv
+character(len=20), dimension(nvar_out) :: varname_out, units_out
+character(len=300), dimension(nvar_out) :: description_out
+
+real*8, dimension(lon) :: longitudein
+real*8, dimension(lat) :: latitudein
+real*4, dimension(lon) :: longitude
+real*4, dimension(lat) :: latitude
+real, dimension(lon,lat,numtimesteps) :: valuesday
+real, dimension(:,:,:,:), allocatable :: &
+ valuesmon_flx, valuesmon_rad, valuesmon_slv
+
+!output variables
+real, dimension(:,:,:), allocatable :: valuesout_temp
+real, dimension(:,:,:,:), allocatable :: valuesout
+
+!netcdf variables
+integer ncid, dimid, varid
+integer timedid, latdid, londid
+integer timeid, latid, lonid
+integer yrid, monid, doyid, dayid, hrid
+integer varid_out(nvar_out)
+integer status, dims(3)
+
+
+!time variables
+integer :: ntime
+real timeinc,dayfrac
+real*8, dimension(:), allocatable :: time
+integer, dimension(:), allocatable :: &
+ timeyr, timemon, timeday, timedoy
+real, dimension(:), allocatable :: timehr
+integer, dimension(12) :: dayspermon, numdays
+character*13, dimension(12) :: monnames
+
+!misc variables
+integer j,k
+integer yr, mon, day, var
+integer count, countstart, countstop
+
+!!!!!data values
+DATA varname_flx /'PRECLSC','PRECANV','PRECCON','PRECSNO'/
+DATA varname_rad /'ALBEDO','SWGDN','LWGAB'/
+DATA varname_slv /'T2M','QV2M','PS','U10M','V10M'/
+
+DATA varname_out /'tm','sh','ps','spdm','lspr','cupr','swd','lwd'/
+DATA dayspermon /31,28,31,30,31,30,31,31,30,31,30,31/
+DATA monnames /'Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec'/
+!!!!!
+
+!Set misc values
+timeinc = numtimesteps/24.
+
+!Read in MERRA lat/lon
+write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !startYr,'/', &
+ trim(fname_rad), startYr, startMon, startDay, suffix
+!print*,'Opening MERRA file: ',trim(filename)
+
+status = nf90_open(trim(filename), nf90_nowrite, ncid)
+if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,'File Name: '
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ stop
+endif
+status = nf90_inq_varid(ncid,'lon',varid)
+status = nf90_get_var(ncid,varid,longitudein)
+status = nf90_inq_varid(ncid,'lat',varid)
+status = nf90_get_var(ncid,varid,latitudein)
+status = nf90_close(ncid)
+
+
+!Process all specified years
+valuesday=0.
+print*,''
+do yr = startYr,stopYr
+
+ numdays = dayspermon
+ if (mod(yr,4) == 0) numdays(2) = numdays(2) + 1
+
+ do mon = startMon, stopMon
+
+ print('(a,a3,a,i4)'),'Processing ',monnames(mon),' ',yr
+ ntime = numtimesteps*numdays(mon)
+ allocate(valuesmon_flx(nvar_flx,lon,lat,ntime))
+ allocate(valuesmon_rad(nvar_rad,lon,lat,ntime))
+ allocate(valuesmon_slv(nvar_slv,lon,lat,ntime))
+
+ valuesmon_flx = 0.
+ valuesmon_rad = 0.
+ valuesmon_slv = 0.
+
+ allocate(time(ntime),timeyr(ntime),timemon(ntime))
+ allocate(timedoy(ntime),timeday(ntime),timehr(ntime))
+
+ time = 0.
+ timeyr = 0.
+ timemon = 0.
+ timedoy = 0.
+ timeday = 0.
+ timehr = 0.
+
+ count=1
+ do day = 1, numdays(mon)
+
+ !Set time variables
+ countstart=count
+ do j=1, numtimesteps
+ timehr(countstart) = startHr + (j-1)*timeinc
+ timeyr(countstart) = yr
+ timemon(countstart) = mon
+ timeday(countstart) = day
+ if (mon .eq. 1) then
+ timedoy(countstart) = day
+ else
+ timedoy(countstart) = day + sum(dayspermon(1:mon-1))
+ endif
+ dayfrac = timedoy(countstart) + timehr(countstart)/24.
+ timedoy(countstart) = dayfrac
+ time(countstart) = yr + dayfrac/(sum(numdays))
+
+ countstart = countstart+1
+ enddo
+ countstart=count
+ countstop=count+numtimesteps-1
+
+ !Open flx file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_flx), yr, mon, day, suffix
+ !print*, 'READING: ', trim(filename)
+
+ status = nf90_open(trim(filename),nf90_nowrite,ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ stop
+ endif
+ do var=1,nvar_flx
+ status = nf90_inq_varid(ncid, trim(varname_flx(var)), varid)
+ !get variable description and units only once
+ if (day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_flx(var))
+ status = nf90_get_att(ncid,varid,'units',units_flx(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading flx data, status =', status
+ print*,var,trim(varname_flx(var))
+ stop
+ endif
+
+ valuesmon_flx(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ !Open rad file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_rad), yr, mon, day, suffix
+ !print*,'READING: ',trim(filename)
+
+ status = nf90_open(trim(filename), nf90_nowrite, ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ endif
+ do var=1,nvar_rad
+ status = nf90_inq_varid(ncid,trim(varname_rad(var)),varid)
+
+ !get variable description and units only once
+ if (mon .eq. 1 .and. day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_rad(var))
+ status = nf90_get_att(ncid,varid,'units',units_rad(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading rad data, status=',status
+ print*,var,trim(varname_rad(var))
+ stop
+ endif
+
+ valuesmon_rad(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ !Open slv file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_slv), yr, mon, day, suffix
+ !print*,'READING: ', trim(filename)
+
+ status = nf90_open(trim(filename),nf90_nowrite,ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ endif
+ do var=1,nvar_slv
+ status = nf90_inq_varid(ncid,trim(varname_slv(var)),varid)
+
+ !get variable description and units only once
+ if (mon .eq. 1 .and. day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_slv(var))
+ status = nf90_get_att(ncid,varid,'units',units_slv(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading slv data, status =',status
+ print*, var, trim(varname_slv(var))
+ stop
+ endif
+ valuesmon_slv(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ count = count + numtimesteps
+ enddo !day
+
+ !Save the gridded data
+ allocate(valuesout_temp(lon,lat,ntime))
+ allocate(valuesout(nvar_out,lon,lat,ntime))
+
+ units_out(1) = 'K'
+ description_out(1) = description_slv(1)
+ units_out(2) = 'kg/kg'
+ description_out(2) = description_slv(2)
+ units_out(3) = 'mb'
+ description_out(3) = description_slv(3)
+ units_out(4) = 'm/s'
+ description_out(4) = 'Wind Speed at 10 m'
+ units_out(5) = 'mm/s'
+ description_out(5) = 'Large Scale Precipitation (with snow)'
+ units_out(6) = 'mm/s'
+ description_out(6) = 'Convective Precipitation'
+ units_out(7) = 'W/m2'
+ description_out(7) = 'Surface solar radiation downwards'
+ units_out(8) = 'W/m2'
+ description_out(8) = 'Surface thermal radiation downwards'
+
+ valuesout(1,:,:,:) = valuesmon_slv(1,:,:,:)
+ valuesout(2,:,:,:) = valuesmon_slv(2,:,:,:)
+ !convert pressure from Pa to mb
+ valuesout(3,:,:,:) = valuesmon_slv(3,:,:,:)/100.
+ !calculate wind from components
+ valuesout(4,:,:,:) = SQRT( &
+ valuesmon_slv(4,:,:,:)*valuesmon_slv(4,:,:,:) + &
+ valuesmon_slv(5,:,:,:)*valuesmon_slv(5,:,:,:))
+ !combine large scale and snow precipitation
+ valuesout(5,:,:,:) = valuesmon_flx(1,:,:,:) + &
+ valuesmon_flx(4,:,:,:)
+ !combine convective and anvil precipitation
+ valuesout(6,:,:,:) = valuesmon_flx(2,:,:,:) + &
+ valuesmon_flx(3,:,:,:)
+ valuesout(7,:,:,:) = valuesmon_rad(2,:,:,:)
+ !...if necessary, calculate net downward shortwave radiation
+ !...by dividing by (1.-albedo)
+ !valuesout(7,j,:) = valuesmon_rad(2,lonref(j),latref(j),:) / &
+ ! (1-valuesmon_rad(1,lonref(j),latref(j),:))
+ valuesout(8,:,:,:) = valuesmon_rad(3,:,:,:)
+
+ !Write out data to netcdf file
+ write(filename,'(a,a,I4.4,I2.2,a3)') &
+ trim(outdir), trim(outprefix), yr, mon, '.nc'
+ print*,'Writing output file: ',trim(filename)
+
+ call check ( nf90_create(trim(filename), &
+ nf90_64bit_offset, ncid) )
+
+ call check ( nf90_def_dim(ncid,'lon',lon,londid))
+ call check ( nf90_def_dim(ncid,'lat',lat,latdid))
+ call check ( nf90_def_dim(ncid, 'time', ntime, timedid) )
+
+ call check ( nf90_def_var(ncid, 'longitude', nf90_float, &
+ (/londid/), lonid) )
+ call check ( nf90_def_var(ncid, 'latitude', nf90_float, &
+ (/latdid/), latid) )
+ call check ( nf90_def_var(ncid, 'time', nf90_double, &
+ (/timedid/), timeid))
+
+ call check ( nf90_def_var(ncid, 'year', nf90_int, &
+ (/timedid/), yrid) )
+ call check ( nf90_def_var(ncid, 'month', nf90_int, &
+ (/timedid/), monid) )
+ call check ( nf90_def_var(ncid, 'doy', nf90_int, &
+ (/timedid/), doyid) )
+
+ call check ( nf90_def_var(ncid, 'day', nf90_int, &
+ (/timedid/), dayid) )
+ call check ( nf90_def_var(ncid, 'hour', nf90_float, &
+ (/timedid/), hrid) )
+
+ dims(1) = londid
+ dims(2) = latdid
+ dims(3) = timedid
+
+ do j=1, nvar_out
+ call check ( nf90_def_var(ncid, trim(varname_out(j)), &
+ nf90_float, dims, varid_out(j)) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'long_name', trim(description_out(j))) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'units',trim(units_out(j))) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'missing_value', 1.e15) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ '_FillValue', 1.e15) )
+ enddo
+
+ call check ( nf90_enddef(ncid) )
+
+ longitude=longitudein
+ call check ( nf90_put_var(ncid, lonid, longitude) )
+
+ latitude=latitudein
+ call check ( nf90_put_var(ncid, latid, latitude) )
+
+ call check ( nf90_put_var(ncid, timeid, time))
+ call check ( nf90_put_var(ncid, yrid, timeyr) )
+ call check ( nf90_put_var(ncid, monid, timemon) )
+ call check ( nf90_put_var(ncid, doyid, timedoy) )
+ call check ( nf90_put_var(ncid, dayid, timeday) )
+ call check ( nf90_put_var(ncid, hrid, timehr) )
+
+ do j=1, nvar_out
+ valuesout_temp(:,:,:) = valuesout(j,:,:,:)
+ call check ( nf90_put_var(ncid, varid_out(j), valuesout_temp) )
+ enddo
+
+ call check ( nf90_close(ncid) )
+
+ deallocate(valuesmon_flx, valuesmon_rad, valuesmon_slv)
+ deallocate(time,timeyr,timemon,timedoy,timeday,timehr)
+ deallocate(valuesout,valuesout_temp)
+
+ enddo !mon
+enddo !yr
+
+print*,'Finished Processing'
+print*,''
+
+end program merra_pullvar
+
+!***********************************************************************
+!***********************************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopped."
+ endif
+
+end subroutine check
+
diff --git a/preprocess/merra_pullvar_auto b/preprocess/merra_pullvar_auto
new file mode 100755
index 0000000000000000000000000000000000000000..07e0f0712447bc5abcf1eda76234def4e1d20a4f
Binary files /dev/null and b/preprocess/merra_pullvar_auto differ
diff --git a/preprocess/merra_pullvar_auto.f90 b/preprocess/merra_pullvar_auto.f90
new file mode 100644
index 0000000000000000000000000000000000000000..49e3805e5cef717ea9bc1c543670e611ace098a1
--- /dev/null
+++ b/preprocess/merra_pullvar_auto.f90
@@ -0,0 +1,419 @@
+!Program to read in daily MERRA files in netcdf4,
+!and to write out gridded driver files in netcdf4,
+!including only the variables necessary for SiB.
+!
+!To compile, use:
+!>f90nc4 merra_pullvar.f90 merra_pullvar
+!
+!kdhaynes, 11/16
+program merra_pullvar
+
+use netcdf
+implicit none
+
+!!!!! user defined variables
+integer, parameter :: startYr=2018, stopYr=2018
+integer, parameter :: startMon=1, stopMon=1
+character*100, parameter :: filedir='/scratch/shared/awoude//MERRA/'
+character*100, parameter :: outdir='/projects/0/ctdas/awoude/NRT/input/'
+character*20, parameter :: outprefix='merra_'
+
+!!!!! MERRA defined variables for 2/3-degree by 1/2-degree hourly data
+integer, parameter :: numtimesteps = 24
+integer, parameter :: lat = 361
+integer, parameter :: lon = 576
+integer, parameter :: startDay=1
+real, parameter :: startHr = 0.5
+
+real, parameter :: initLon = -180.0
+real, parameter :: initLat = -90.0
+
+character*30, parameter :: fname_flx = 'MERRA2_400.tavg1_2d_flx_Nx.'
+character*30, parameter :: fname_rad = 'MERRA2_400.tavg1_2d_rad_Nx.'
+character*30, parameter :: fname_slv = 'MERRA2_400.tavg1_2d_slv_Nx.'
+character*4, parameter :: suffix = '.nc4'
+
+integer, parameter :: nvar_flx = 4
+integer, parameter :: nvar_rad = 3
+integer, parameter :: nvar_slv = 5
+integer, parameter :: nvar_out = 8
+
+! file variables
+character(len=100) filename
+character(len=20), dimension(nvar_flx) :: varname_flx, units_flx
+character(len=300), dimension(nvar_flx) :: description_flx
+character(len=20), dimension(nvar_rad) :: varname_rad, units_rad
+character(len=300), dimension(nvar_rad) :: description_rad
+character(len=20), dimension(nvar_slv) :: varname_slv, units_slv
+character(len=300), dimension(nvar_slv) :: description_slv
+character(len=20), dimension(nvar_out) :: varname_out, units_out
+character(len=300), dimension(nvar_out) :: description_out
+
+real*8, dimension(lon) :: longitudein
+real*8, dimension(lat) :: latitudein
+real*4, dimension(lon) :: longitude
+real*4, dimension(lat) :: latitude
+real, dimension(lon,lat,numtimesteps) :: valuesday
+real, dimension(:,:,:,:), allocatable :: &
+ valuesmon_flx, valuesmon_rad, valuesmon_slv
+
+!output variables
+real, dimension(:,:,:), allocatable :: valuesout_temp
+real, dimension(:,:,:,:), allocatable :: valuesout
+
+!netcdf variables
+integer ncid, dimid, varid
+integer timedid, latdid, londid
+integer timeid, latid, lonid
+integer yrid, monid, doyid, dayid, hrid
+integer varid_out(nvar_out)
+integer status, dims(3)
+
+
+!time variables
+integer :: ntime
+real timeinc,dayfrac
+real*8, dimension(:), allocatable :: time
+integer, dimension(:), allocatable :: &
+ timeyr, timemon, timeday, timedoy
+real, dimension(:), allocatable :: timehr
+integer, dimension(12) :: dayspermon, numdays
+character*13, dimension(12) :: monnames
+
+!misc variables
+integer j,k
+integer yr, mon, day, var
+integer count, countstart, countstop
+
+!!!!!data values
+DATA varname_flx /'PRECLSC','PRECANV','PRECCON','PRECSNO'/
+DATA varname_rad /'ALBEDO','SWGDN','LWGAB'/
+DATA varname_slv /'T2M','QV2M','PS','U10M','V10M'/
+
+DATA varname_out /'tm','sh','ps','spdm','lspr','cupr','swd','lwd'/
+DATA dayspermon /31,28,31,30,31,30,31,31,30,31,30,31/
+DATA monnames /'Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec'/
+!!!!!
+
+!Set misc values
+timeinc = numtimesteps/24.
+
+!Read in MERRA lat/lon
+write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !startYr,'/', &
+ trim(fname_rad), startYr, startMon, startDay, suffix
+!print*,'Opening MERRA file: ',trim(filename)
+
+status = nf90_open(trim(filename), nf90_nowrite, ncid)
+if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,'File Name: '
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ stop
+endif
+status = nf90_inq_varid(ncid,'lon',varid)
+status = nf90_get_var(ncid,varid,longitudein)
+status = nf90_inq_varid(ncid,'lat',varid)
+status = nf90_get_var(ncid,varid,latitudein)
+status = nf90_close(ncid)
+
+
+!Process all specified years
+valuesday=0.
+print*,''
+do yr = startYr,stopYr
+
+ numdays = dayspermon
+ if (mod(yr,4) == 0) numdays(2) = numdays(2) + 1
+
+ do mon = startMon, stopMon
+
+ print('(a,a3,a,i4)'),'Processing ',monnames(mon),' ',yr
+ ntime = numtimesteps*numdays(mon)
+ allocate(valuesmon_flx(nvar_flx,lon,lat,ntime))
+ allocate(valuesmon_rad(nvar_rad,lon,lat,ntime))
+ allocate(valuesmon_slv(nvar_slv,lon,lat,ntime))
+
+ valuesmon_flx = 0.
+ valuesmon_rad = 0.
+ valuesmon_slv = 0.
+
+ allocate(time(ntime),timeyr(ntime),timemon(ntime))
+ allocate(timedoy(ntime),timeday(ntime),timehr(ntime))
+
+ time = 0.
+ timeyr = 0.
+ timemon = 0.
+ timedoy = 0.
+ timeday = 0.
+ timehr = 0.
+
+ count=1
+ do day = 1, numdays(mon)
+
+ !Set time variables
+ countstart=count
+ do j=1, numtimesteps
+ timehr(countstart) = startHr + (j-1)*timeinc
+ timeyr(countstart) = yr
+ timemon(countstart) = mon
+ timeday(countstart) = day
+ if (mon .eq. 1) then
+ timedoy(countstart) = day
+ else
+ timedoy(countstart) = day + sum(dayspermon(1:mon-1))
+ endif
+ dayfrac = timedoy(countstart) + timehr(countstart)/24.
+ timedoy(countstart) = dayfrac
+ time(countstart) = yr + dayfrac/(sum(numdays))
+
+ countstart = countstart+1
+ enddo
+ countstart=count
+ countstop=count+numtimesteps-1
+
+ !Open flx file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_flx), yr, mon, day, suffix
+ !print*, 'READING: ', trim(filename)
+
+ status = nf90_open(trim(filename),nf90_nowrite,ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ stop
+ endif
+ do var=1,nvar_flx
+ status = nf90_inq_varid(ncid, trim(varname_flx(var)), varid)
+ !get variable description and units only once
+ if (day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_flx(var))
+ status = nf90_get_att(ncid,varid,'units',units_flx(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading flx data, status =', status
+ print*,var,trim(varname_flx(var))
+ stop
+ endif
+
+ valuesmon_flx(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ !Open rad file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_rad), yr, mon, day, suffix
+ !print*,'READING: ',trim(filename)
+
+ status = nf90_open(trim(filename), nf90_nowrite, ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ endif
+ do var=1,nvar_rad
+ status = nf90_inq_varid(ncid,trim(varname_rad(var)),varid)
+
+ !get variable description and units only once
+ if (mon .eq. 1 .and. day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_rad(var))
+ status = nf90_get_att(ncid,varid,'units',units_rad(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading rad data, status=',status
+ print*,var,trim(varname_rad(var))
+ stop
+ endif
+
+ valuesmon_rad(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ !Open slv file
+ write(filename,'(a,a,i4.4,2i2.2,a)') &
+ trim(filedir), & !yr, '/', &
+ trim(fname_slv), yr, mon, day, suffix
+ !print*,'READING: ', trim(filename)
+
+ status = nf90_open(trim(filename),nf90_nowrite,ncid)
+ if (status .ne. nf90_noerr) then
+ print*,'Error Opening File.'
+ print*,' ',trim(filename)
+ print*,'Status: ',status
+ endif
+ do var=1,nvar_slv
+ status = nf90_inq_varid(ncid,trim(varname_slv(var)),varid)
+
+ !get variable description and units only once
+ if (mon .eq. 1 .and. day .eq. 1) then
+ status = nf90_get_att(ncid,varid,'long_name',description_slv(var))
+ status = nf90_get_att(ncid,varid,'units',units_slv(var))
+ endif
+ status = nf90_get_var(ncid,varid,valuesday)
+ if (status < 0) then
+ print*,'Error reading slv data, status =',status
+ print*, var, trim(varname_slv(var))
+ stop
+ endif
+ valuesmon_slv(var,:,:,countstart:countstop) = &
+ valuesday(:,:,1:numtimesteps)
+
+ enddo !var
+ status = nf90_close(ncid)
+
+ count = count + numtimesteps
+ enddo !day
+
+ !Save the gridded data
+ allocate(valuesout_temp(lon,lat,ntime))
+ allocate(valuesout(nvar_out,lon,lat,ntime))
+
+ units_out(1) = 'K'
+ description_out(1) = description_slv(1)
+ units_out(2) = 'kg/kg'
+ description_out(2) = description_slv(2)
+ units_out(3) = 'mb'
+ description_out(3) = description_slv(3)
+ units_out(4) = 'm/s'
+ description_out(4) = 'Wind Speed at 10 m'
+ units_out(5) = 'mm/s'
+ description_out(5) = 'Large Scale Precipitation (with snow)'
+ units_out(6) = 'mm/s'
+ description_out(6) = 'Convective Precipitation'
+ units_out(7) = 'W/m2'
+ description_out(7) = 'Surface solar radiation downwards'
+ units_out(8) = 'W/m2'
+ description_out(8) = 'Surface thermal radiation downwards'
+
+ valuesout(1,:,:,:) = valuesmon_slv(1,:,:,:)
+ valuesout(2,:,:,:) = valuesmon_slv(2,:,:,:)
+ !convert pressure from Pa to mb
+ valuesout(3,:,:,:) = valuesmon_slv(3,:,:,:)/100.
+ !calculate wind from components
+ valuesout(4,:,:,:) = SQRT( &
+ valuesmon_slv(4,:,:,:)*valuesmon_slv(4,:,:,:) + &
+ valuesmon_slv(5,:,:,:)*valuesmon_slv(5,:,:,:))
+ !combine large scale and snow precipitation
+ valuesout(5,:,:,:) = valuesmon_flx(1,:,:,:) + &
+ valuesmon_flx(4,:,:,:)
+ !combine convective and anvil precipitation
+ valuesout(6,:,:,:) = valuesmon_flx(2,:,:,:) + &
+ valuesmon_flx(3,:,:,:)
+ valuesout(7,:,:,:) = valuesmon_rad(2,:,:,:)
+ !...if necessary, calculate net downward shortwave radiation
+ !...by dividing by (1.-albedo)
+ !valuesout(7,j,:) = valuesmon_rad(2,lonref(j),latref(j),:) / &
+ ! (1-valuesmon_rad(1,lonref(j),latref(j),:))
+ valuesout(8,:,:,:) = valuesmon_rad(3,:,:,:)
+
+ !Write out data to netcdf file
+ write(filename,'(a,a,I4.4,I2.2,a3)') &
+ trim(outdir), trim(outprefix), yr, mon, '.nc'
+ print*,'Writing output file: ',trim(filename)
+
+ call check ( nf90_create(trim(filename), &
+ nf90_64bit_offset, ncid) )
+
+ call check ( nf90_def_dim(ncid,'lon',lon,londid))
+ call check ( nf90_def_dim(ncid,'lat',lat,latdid))
+ call check ( nf90_def_dim(ncid, 'time', ntime, timedid) )
+
+ call check ( nf90_def_var(ncid, 'longitude', nf90_float, &
+ (/londid/), lonid) )
+ call check ( nf90_def_var(ncid, 'latitude', nf90_float, &
+ (/latdid/), latid) )
+ call check ( nf90_def_var(ncid, 'time', nf90_double, &
+ (/timedid/), timeid))
+
+ call check ( nf90_def_var(ncid, 'year', nf90_int, &
+ (/timedid/), yrid) )
+ call check ( nf90_def_var(ncid, 'month', nf90_int, &
+ (/timedid/), monid) )
+ call check ( nf90_def_var(ncid, 'doy', nf90_int, &
+ (/timedid/), doyid) )
+
+ call check ( nf90_def_var(ncid, 'day', nf90_int, &
+ (/timedid/), dayid) )
+ call check ( nf90_def_var(ncid, 'hour', nf90_float, &
+ (/timedid/), hrid) )
+
+ dims(1) = londid
+ dims(2) = latdid
+ dims(3) = timedid
+
+ do j=1, nvar_out
+ call check ( nf90_def_var(ncid, trim(varname_out(j)), &
+ nf90_float, dims, varid_out(j)) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'long_name', trim(description_out(j))) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'units',trim(units_out(j))) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ 'missing_value', 1.e15) )
+ call check ( nf90_put_att(ncid, varid_out(j), &
+ '_FillValue', 1.e15) )
+ enddo
+
+ call check ( nf90_enddef(ncid) )
+
+ longitude=longitudein
+ call check ( nf90_put_var(ncid, lonid, longitude) )
+
+ latitude=latitudein
+ call check ( nf90_put_var(ncid, latid, latitude) )
+
+ call check ( nf90_put_var(ncid, timeid, time))
+ call check ( nf90_put_var(ncid, yrid, timeyr) )
+ call check ( nf90_put_var(ncid, monid, timemon) )
+ call check ( nf90_put_var(ncid, doyid, timedoy) )
+ call check ( nf90_put_var(ncid, dayid, timeday) )
+ call check ( nf90_put_var(ncid, hrid, timehr) )
+
+ do j=1, nvar_out
+ valuesout_temp(:,:,:) = valuesout(j,:,:,:)
+ call check ( nf90_put_var(ncid, varid_out(j), valuesout_temp) )
+ enddo
+
+ call check ( nf90_close(ncid) )
+
+ deallocate(valuesmon_flx, valuesmon_rad, valuesmon_slv)
+ deallocate(time,timeyr,timemon,timedoy,timeday,timehr)
+ deallocate(valuesout,valuesout_temp)
+
+ enddo !mon
+enddo !yr
+
+print*,'Finished Processing'
+print*,''
+
+end program merra_pullvar
+
+!***********************************************************************
+!***********************************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopped."
+ endif
+
+end subroutine check
+
diff --git a/preprocess/merra_pullvar_auto.o b/preprocess/merra_pullvar_auto.o
new file mode 100644
index 0000000000000000000000000000000000000000..77c6c477814a2ececfb95bee519a8b2c6e90a646
Binary files /dev/null and b/preprocess/merra_pullvar_auto.o differ
diff --git a/preprocess/proc_merra2_ges_disc.sh b/preprocess/proc_merra2_ges_disc.sh
new file mode 100755
index 0000000000000000000000000000000000000000..1bb0441784a6516b551ba18f57b7b6f140f509d0
--- /dev/null
+++ b/preprocess/proc_merra2_ges_disc.sh
@@ -0,0 +1,180 @@
+#!/bin/sh
+#------------------------------------------------------------------------------
+# NASA/GSFC, Computational and Information Science and Technology Office,
+# Code 606
+#------------------------------------------------------------------------------
+#
+# SCRIPT: proc_merra2_ges_disc.sh
+#
+# AUTHOR:
+# Eric Kemp, NASA CISTO/SSAI
+#
+# DESCRIPTION:
+# Script for fetching MERRA2 data from NASA GES DISC web site for use by
+# MERRA2WRF. Requires wget utility and Get_dates_daily.py script. Based on
+# Jossy Jacob's Run_MERRA2.csh script.
+#
+# REVISION HISTORY:
+# 18 Sep 2015 - First version.
+#
+#------------------------------------------------------------------------------
+
+# Process command line arguments.
+if [ "$#" -ne 4 ] ; then
+ echo 'Usage: proc_merra2_ges_disc.sh STARTDATE ENDDATE RUNDIR NUWRFDIR'
+ echo 'Example: ./proc_merra2_ges_disc.sh 19890101 19890104 MERRA_data /path/to/nuwrf'
+ exit 1
+fi
+STARTDATE=$1
+ENDDATE=$2
+RUNDIR=$3
+NUWRFDIR=$4
+
+# Set WORKDIR and ensure it is an absolute path. Create directory and
+# subdirectories as needed.
+WORKDIR="$RUNDIR"
+if [ ! -e $WORKDIR ] ; then
+ mkdir $WORKDIR || exit 1
+fi
+cd $WORKDIR
+WORKDIR=`pwd` # Absolute path.
+if [ ! -e $WORKDIR/m2wIn ] ; then
+ mkdir $WORKDIR/m2wIn || exit 1
+fi
+if [ ! -e $WORKDIR/m2wOut ] ; then
+ mkdir $WORKDIR/m2wOut || exit 1
+fi
+
+# Link executables from NUWRFDIR
+#ln -fs $NUWRFDIR/utils/geos2wrf_2/merra2wrf $WORKDIR/merra2wrf || exit 1
+ln -fs $NUWRFDIR/merra2wrf $WORKDIR/merra2wrf || exit 1
+if [ ! -e $WORKDIR/merra2wrf ] ; then
+ echo Line 52
+ echo "ERROR, $WORKDIR/merra2wrf does not exist!"
+ exit 1
+fi
+ln -fs $NUWRFDIR/RUN_MERRA2/Get_dates_daily.py \
+ $WORKDIR/Get_dates_daily.py || exit 1
+if [ ! -e $WORKDIR/Get_dates_daily.py ] ; then
+ echo "ERROR, $WORKDIR/Get_dates_daily.py does not exist!"
+ exit 1
+fi
+
+# Construct list of dates.
+cd $WORKDIR || exit 1
+DT=1 # Day
+$WORKDIR/Get_dates_daily.py $STARTDATE $ENDDATE $DT || exit 1
+if [ ! -e "$WORKDIR/Datetime.dat" ] ; then
+ echo "ERROR, Datetime.dat not generated!"
+ exit 1
+fi
+
+# Get const_2d_asm_Nx file. This is used for all dates.
+cd $WORKDIR/m2wIn || exit 1
+# Updated 21 March 2016
+#file1=MERRA2_100.const_2d_asm_Nx.00000000.nc4
+file1=MERRA2_101.const_2d_asm_Nx.00000000.nc4
+if [ ! -e "$file1" ] ; then
+ WEBSITE=http://goldsmr4.gesdisc.eosdis.nasa.gov/
+ path=data/s4pa/MERRA2_MONTHLY/M2C0NXASM.5.12.4/1980/$file1
+ wget $WEBSITE/$path || exit 1
+fi
+
+# Loop through the dates, fetch date specific files, and run MERRA2WRF.
+for date in $(cat $WORKDIR/Datetime.dat) ; do
+
+ YEAR=`echo $date | cut -c1-4`
+ MONTH=`echo $date | cut -c5-6`
+ DAY=`echo $date | cut -c7-8`
+
+ # File prefix depends on MERRA2 "data stream" which depends on year.
+ if [ "$YEAR" -lt 1992 ] ; then
+ MERRANAME="MERRA2_100"
+ elif [ "$YEAR" -lt 2001 ] ; then
+ MERRANAME="MERRA2_200"
+ elif [ "$YEAR" -lt 2011 ] ; then
+ MERRANAME="MERRA2_300"
+ else
+ MERRANAME="MERRA2_400"
+ fi
+
+ # Get inst6_3d_ana_Nv file.
+ echo Get inst6_3d_ana_Nv file.\n
+ file2=$MERRANAME.inst6_3d_ana_Nv.$YEAR$MONTH$DAY.nc4
+ if [ ! -e "$file2" ] ; then
+ WEBSITE=http://goldsmr5.gesdisc.eosdis.nasa.gov/
+ path=data/MERRA2/M2I6NVANA.5.12.4/$YEAR/$MONTH/$file2
+ wget $WEBSITE/$path || exit 1
+ fi
+
+ # Get inst6_3d_ana_Np file.
+ echo Get inst6_3d_ana_Np file.\n
+ file3=$MERRANAME.inst6_3d_ana_Np.$YEAR$MONTH$DAY.nc4
+ if [ ! -e "$file3" ] ; then
+ WEBSITE=http://goldsmr5.gesdisc.eosdis.nasa.gov/
+ path=data/MERRA2/M2I6NPANA.5.12.4/$YEAR/$MONTH/$file3
+ wget $WEBSITE/$path || exit 1
+ fi
+
+ # Get tavg1_2d_slv_Nx file.
+ echo Get tavg1_2d_slv_Nx file.\n
+ file4=$MERRANAME.tavg1_2d_slv_Nx.$YEAR$MONTH$DAY.nc4
+ if [ ! -e "$file4" ] ; then
+ WEBSITE=http://goldsmr4.gesdisc.eosdis.nasa.gov/
+ path=data/MERRA2/M2T1NXSLV.5.12.4/$YEAR/$MONTH/$file4
+ wget $WEBSITE/$path || exit 1
+ fi
+
+ # Get tavg1_2d_ocn_Nx file.
+ echo Get tavg1_2d_ocn_Nx file.\n
+ file5=$MERRANAME.tavg1_2d_ocn_Nx.$YEAR$MONTH$DAY.nc4
+ if [ ! -e "$file5" ] ; then
+ WEBSITE=http://goldsmr4.gesdisc.eosdis.nasa.gov
+ path=data/MERRA2/M2T1NXOCN.5.12.4/$YEAR/$MONTH/$file5
+ wget $WEBSITE/$path || exit 1
+ fi
+
+ MERRADATE="$YEAR-$MONTH-$DAY"
+ MERRADATE2="$YEAR$MONTH$DAY"
+
+ # Now run MERRA2WRF for the collected data.
+ cd $WORKDIR || exit 1
+ cat > namelist.merra2wrf_daily <<EOF
+&input
+ outputDirectory = '$WORKDIR/m2wOut',
+ merraDirectory = '$WORKDIR/m2wIn',
+ merraFormat_const_2d_asm_Nx = 2,
+ merraFile_const_2d_asm_Nx = '$file1',
+ numberOfDays=1,
+ merraDates(1)="$MERRADATE",
+ merraFormat_inst6_3d_ana_Nv = 2,
+ merraFiles_inst6_3d_ana_Nv(1) = '$file2',
+ merraFormat_inst6_3d_ana_Np = 2,
+ merraFiles_inst6_3d_ana_Np(1) = '$file3',
+ merraFormat_tavg1_2d_slv_Nx = 2,
+ merraFiles_tavg1_2d_slv_Nx(1) = '$file4',
+ merraFormat_tavg1_2d_ocn_Nx = 2,
+ merraFiles_tavg1_2d_ocn_Nx(1) = '$file5',
+/
+EOF
+ $WORKDIR/merra2wrf namelist.merra2wrf_daily || exit 1
+
+ # Daily file cleanup.
+ rm $WORKDIR/m2wIn/$file2
+ rm $WORKDIR/m2wIn/$file3
+ rm $WORKDIR/m2wIn/$file4
+ rm $WORKDIR/m2wIn/$file5
+
+ cd $WORKDIR/m2wIn || exit 1
+
+done
+
+# Final file cleanup.
+rm $WORKDIR/m2wIn/$file1
+
+# The End.
+echo "MERRA2WRF output files are in $WORKDIR/m2wOut"
+echo "Completed MERRA2 processing"
+exit 0
+
+
diff --git a/preprocess/scale_merra b/preprocess/scale_merra
new file mode 100755
index 0000000000000000000000000000000000000000..2d1e7c0a2b8d01c7afd60a2cba05dc26d0043b25
Binary files /dev/null and b/preprocess/scale_merra differ
diff --git a/preprocess/scale_merra_gpcp.f90 b/preprocess/scale_merra_gpcp.f90
new file mode 100644
index 0000000000000000000000000000000000000000..421343e6cdc20e76be3db50013ab765b5b37d3d6
--- /dev/null
+++ b/preprocess/scale_merra_gpcp.f90
@@ -0,0 +1,388 @@
+!Program to change the precipitation values for the SiB driver files
+!and scale them to GPCP precipitation.
+!
+!Program finds the ratio between the MERRA and GPCP precipitation
+!and multiplies by this ratio to 'scale' the precip.
+!
+!MERRA precip units assumed to be mm/s, with hourly data
+!GPCP precip units assumed to be mm/month, with monthly data
+! --Expects GPCP to be regridded to MERRA resolution!!
+!
+!Program will not change the timing nor 'create' precip in MERRA.
+!
+!NOTE: This will actually change the netcdf file!
+!
+!To compile, use:
+!>pgf90 scale_merra_gpcp.f90 -L/usr/local/netcdf3-pgi/lib -lnetcdf -I/usr/local/netcdf3-pgi/include -o scale_merra_gpcp
+!
+!-or- (if defined)
+!>f90nc scale_merra_gpcp.f90
+!>f90nco scale_merra_gpcp.f90 scale_merra_gpcp
+!
+!-or-
+!>make scale_merra_gpcp
+!
+!kdhaynes, 01/2018
+
+program scale_merra_gpcp
+
+use netcdf
+implicit none
+
+!!!user defined variables
+integer, parameter :: startYr=2019, stopYr=2019
+integer, parameter :: startMon=8, stopMon=12
+
+!.....GPCP v2.3
+!.....(2.5-degree, monthly, units of mm/day)
+character*180, parameter :: &
+ gpcpfile='/projects/0/ctdas/sib4_input/meteo/gpcp/gpcp_0.625dx0.5d_tot.nc'
+
+!....MERRA-2
+character*100, parameter :: &
+ merradir='/scratch/shared/nsmith/merra_proc/'
+character*20, parameter :: &
+ merraprefix='merra_'
+
+!!!other MERRA parameters
+!!!assuming 2/3-degree lon by 1/2-degree lat, hourly data
+real*4, parameter :: timeconvert=3600.
+
+!space variables
+integer nlon, nlat
+real, dimension(:), allocatable :: lon, lat
+
+!time variables
+character*3 :: monname(12)
+character*100 :: monlabel
+
+!merra variables
+integer nlonm, nlatm, ntimem
+integer :: merrauaf, merraba
+
+real, dimension(:,:,:), allocatable :: lsprin, cuprin
+real, dimension(:,:,:), allocatable :: lsprout, cuprout
+real, dimension(:,:), allocatable :: merraprecipin, merraprecipout
+real, dimension(:,:), allocatable :: ratio
+
+!gpcp variables
+integer :: ntimeg, gpcpref
+real :: myyrstart, myyrnext
+real, dimension(:), allocatable :: timeg
+real, dimension(:,:,:), allocatable :: gpcpin
+real, dimension(:,:), allocatable :: gpcpprecip
+
+!areal variables
+real :: deltalon, deltalat
+real, dimension(:), allocatable :: lonE, lonW, arlon
+real, dimension(:), allocatable :: latN, latS, arlat
+
+!comparison variables
+integer :: ratioa1, ratiob1, ratio1
+real*8 :: preciptotg, preciptotmin, preciptotmout
+
+!netcdf variables
+integer ncid,dimid,varid,status
+integer nlondid, nlatdid, ntimedid
+integer lsprid, cuprid
+character*20 :: dimname
+character*120 :: merraname
+
+!misc variables
+integer :: i,j, yr, mon
+integer :: mystartmon, mystopmon
+
+!local variables
+real :: radius
+real*8 :: pi
+
+!Define/set variables
+data monname/'Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec'/
+pi = acos(-1.0)
+radius = 6371000.
+
+!Get the GPCP data
+print*,''
+print('(a)'),'GPCP File Information: '
+print('(a,a)'), ' ',trim(gpcpfile)
+status = nf90_open( trim(gpcpfile), nf90_nowrite, ncid )
+IF (status .ne. nf90_noerr) THEN
+ print*,'Error Finding GPCP File. Stopping.'
+ STOP
+ENDIF
+
+status = nf90_inq_dimid(ncid, 'lon', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlon)
+status = nf90_inq_dimid(ncid, 'lat', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlat)
+status = nf90_inq_dimid(ncid, 'time', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, ntimeg)
+
+allocate(lon(nlon),lat(nlat),timeg(ntimeg))
+status = nf90_inq_varid(ncid, 'lon', varid )
+status = nf90_get_var(ncid, varid, lon )
+
+status = nf90_inq_varid(ncid, 'lat', varid )
+status = nf90_get_var(ncid, varid, lat )
+
+status = nf90_inq_varid(ncid, 'time', varid )
+status = nf90_get_var(ncid, varid, timeg)
+
+allocate(gpcpin(nlon,nlat,ntimeg))
+allocate(gpcpprecip(nlon,nlat))
+status = nf90_inq_varid(ncid, 'precip', varid )
+status = nf90_get_var(ncid, varid, gpcpin )
+status = nf90_close(ncid)
+
+!....get GPCP time reference start
+IF (startyr .LT. floor(timeg(1))) THEN
+ print*,'Requesting GPCP Data Prior To Available.'
+ print*,'Stopping.'
+ELSEIF (startyr .GT. ceiling(timeg(ntimeg))) THEN
+ print*,'Requesting GPCP Data After Available.'
+ print*,'Stopping.'
+ELSE
+ myyrstart = startyr + real(startMon-0.5)/12.
+ gpcpref = -999
+ DO i=1,ntimeg
+ myyrnext = timeg(i) + 0.5/12.
+ IF ((myyrstart .GE. timeg(i)) .AND. &
+ (myyrstart .LT. myyrnext)) THEN
+ gpcpref = i
+ ENDIF
+ ENDDO
+ IF (gpcpref .lt. 1) THEN
+ print*,'Invalid GPCP Time Requested.'
+ print*,'Stopping.'
+ ENDIF
+ENDIF
+print('(a,i6,f10.2)'),' GPCP Start Ref and Time: ', &
+ gpcpref, timeg(gpcpref)
+
+
+!...get areal variables for precipitation totals
+deltalon=(lon(3)-lon(2))/2.
+deltalat=(lat(3)-lat(2))/2.
+
+allocate(lonE(nlon),lonW(nlon),arlon(nlon))
+do i=1,nlon
+ lonE(i)=lon(i)+deltalon
+ lonW(i)=lon(i)-deltalon
+ arlon(i)=(lonE(i)-lonW(i))/360.
+enddo
+arlon = arlon*2*pi*radius*radius/1.e15
+
+allocate(latS(nlat),latN(nlat),arlat(nlat))
+do j=1,nlat
+ if (j .eq. 1) then
+ latS(j) = -90.
+ latN(j) = (lat(j+1) + lat(j))*0.5
+ elseif (j .eq. 2) then
+ latS(j) = (lat(j-1) + lat(j))*0.5
+ latN(j) = lat(j) + deltalat
+ elseif (j .eq. nlat-1) then
+ latS(j) = lat(j) - deltalat
+ latN(j) = (lat(j) + lat(j+1))*0.5
+ elseif (j .eq. nlat) then
+ latS(j) = (lat(j-1) + lat(j))*0.5
+ latN(j) = 90.
+ else
+ latS(j) = lat(j) - deltalat
+ latN(j) = lat(j) + deltalat
+ endif
+ arlat(j) = -sin(pi*latS(j)/180.) + &
+ sin(pi*latN(j)/180.)
+enddo
+
+!Loop over years/months
+do yr=startYr,stopYr
+ mystartmon=1
+ mystopmon=12
+ IF (yr .eq. startyr) mystartmon=startMon
+ IF (yr .eq. stopyr) mystopmon=stopMon
+
+ do mon=mystartmon,mystopmon
+
+ !Get the GPCP data
+ IF ((gpcpref .GE. 1) .and. (gpcpref .LE. ntimeg)) THEN
+ gpcpprecip(:,:) = gpcpin(:,:,gpcpref)
+ gpcpref = gpcpref + 1
+ ELSE
+ print*,'Requested GPCP Data After Available.'
+ print*,'Stopping.'
+ STOP
+ ENDIF
+
+ !Open the MERRA file to modify
+ write(merraname,'(a,a,i4.4,i2.2,a)') &
+ trim(merradir), trim(merraprefix), yr, mon, '.nc'
+ call check ( nf90_open( trim(merraname), nf90_write, ncid ) )
+
+ call check ( nf90_inq_dimid(ncid, 'time', ntimedid ) )
+ call check ( nf90_inquire_dimension(ncid, ntimedid, dimname, ntimem) )
+
+ !check lon/lat info for MERRA only if first time through loop
+ if (mon .eq. startMon .and. yr .eq. startYr) then
+ call check ( nf90_inq_dimid(ncid, 'lon', nlondid ) )
+ call check ( nf90_inquire_dimension(ncid, nlondid, len=nlonm) )
+ call check ( nf90_inq_dimid(ncid, 'lat', nlatdid ) )
+ call check ( nf90_inquire_dimension(ncid, nlatdid, len=nlatm) )
+
+ IF ((nlonm .NE. nlon) .OR. (nlatm .NE. nlat)) THEN
+ print*,'Mismatching GPCP/MERRA Dimensions'
+ print*,' GPCP Lon/Lat: ',nlon,nlat
+ print*,' MERRA Lon/Lat: ',nlonm,nlatm
+ print*,'Stopping.'
+ STOP
+ ELSE
+ print('(a,2I6,2F10.4)'), &
+ ' Dimensions (nlon/nlat/dlon/dlat): ', &
+ nlonm,nlatm,(lon(3)-lon(2)),lat(3)-lat(2)
+ ENDIF
+
+ allocate(merraprecipin(nlonm,nlatm))
+ allocate(merraprecipout(nlonm,nlatm))
+ allocate(ratio(nlonm,nlatm))
+ ENDIF !yr==startyr, mon==startmon
+
+ print*,''
+ write(monlabel,'(a,a,a,i4.4)') 'Processing ',monname(mon), ' ', yr
+ print('(a)'),trim(monlabel)
+ print('(a)'),' Modifying MERRA File: '
+ print('(a,a)'),' ',trim(merraname)
+
+ allocate(lsprin(nlonm,nlatm,ntimem),cuprin(nlonm,nlatm,ntimem))
+ allocate(lsprout(nlonm,nlatm,ntimem),cuprout(nlonm,nlatm,ntimem))
+ call check ( nf90_inq_varid(ncid, 'lspr', varid ) )
+ call check ( nf90_get_var(ncid, varid, lsprin ) )
+ call check ( nf90_inq_varid(ncid, 'cupr', varid ) )
+ call check ( nf90_get_var(ncid, varid, cuprin ) )
+ lsprout=lsprin
+ cuprout=cuprin
+
+ !Compare the precipitation
+ ratioa1 = 0
+ ratiob1 = 0
+ ratio1 = 0
+ DO i=1,nlon
+ DO j=1,nlat
+ merraprecipin(i,j) = (sum(cuprin(i,j,:)) + sum(lsprin(i,j,:))) &
+ *timeconvert
+ IF (merraprecipin(i,j) .GT. 0.) THEN
+ ratio(i,j) = gpcpprecip(i,j) / merraprecipin(i,j)
+ ELSE
+ ratio(i,j) = 0.
+ ENDIF
+
+ IF (ratio(i,j) .GT. 1.001) THEN
+ ratioa1 = ratioa1 + 1
+ ELSEIF (ratio(i,j) .LT. 0.999) THEN
+ ratiob1 = ratiob1 + 1
+ ELSE
+ ratio1 = ratio1 + 1
+ ENDIF
+
+ cuprout(i,j,:) = cuprout(i,j,:)*ratio(i,j)
+ lsprout(i,j,:) = lsprout(i,j,:)*ratio(i,j)
+ merraprecipout(i,j) = (sum(cuprout(i,j,:)) + sum(lsprout(i,j,:))) &
+ *timeconvert
+ ENDDO !j
+ ENDDO !i
+
+ !Check total precipitations
+ preciptotmin=0.0
+ preciptotmout=0.0
+ preciptotg=0.0
+ DO i=1,nlon
+ DO j=1,nlat
+ preciptotmin = preciptotmin + &
+ merraprecipin(i,j)*arlon(i)*arlat(j)
+ preciptotmout = preciptotmout + &
+ merraprecipout(i,j)*arlon(i)*arlat(j)
+ preciptotg = preciptotg + &
+ gpcpprecip(i,j)*arlon(i)*arlat(j)
+ ENDDO
+ ENDDO
+
+ !Print out stats
+ print*,''
+ print('(a)'),' Monthly Precipitation Totals (kg)'
+ print('(a,E14.5)'),' MERRA Original: ',preciptotmin
+ print('(a,E14.5)'),' MERRA Scaled: ',preciptotmout
+ print('(a,E14.5)'),' GPCP: ',preciptotg
+
+ print*,''
+ print('(a)'),' Ratio Information: '
+ print('(a,2E14.5)'),' Ratio Min/Max: ',minval(ratio), maxval(ratio)
+ print('(a,I8)'), ' # > 1.0: ', ratioa1
+ print('(a,I8)'), ' # < 1.0: ', ratiob1
+ print('(a,I8)'), ' # = 1.0: ', ratio1
+ print('(a,I8)'), ' TOTAL: ', ratioa1+ratiob1+ratio1
+
+ !Write out the new scaled data
+ status = nf90_inq_varid(ncid, 'lspr_scaled', lsprid )
+ if (status .ne. 0) then
+ call check ( nf90_redef(ncid) )
+ call check ( nf90_def_var( ncid, 'lspr_scaled', nf90_float, &
+ (/nlondid,nlatdid,ntimedid/), lsprid ) )
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'long_name','Scaled Large Scale Precip'))
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'title', 'LSPR Scaled To GPCP v2.3'))
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'units', 'mm/s'))
+ call check ( nf90_enddef( ncid ) )
+ endif
+
+ status = nf90_inq_varid(ncid, 'cupr_scaled', cuprid )
+ if (status .ne. 0) then
+ call check ( nf90_redef(ncid) )
+ call check ( nf90_def_var( ncid, 'cupr_scaled', nf90_float, &
+ (/nlondid,nlatdid,ntimedid/), cuprid ) )
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'long_name','Scaled Convective Precip'))
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'title', 'CUPR Scaled to GPCP v2.3'))
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'units', 'mm/s'))
+ call check ( nf90_enddef( ncid ) )
+ endif
+
+ !!!Setting all precip to large-scale!!!
+ !lsprout = lsprout + cuprout
+ !cuprout = 0.
+
+ call check ( nf90_put_var( ncid, lsprid, lsprout) )
+ call check ( nf90_put_var( ncid, cuprid, cuprout) )
+ call check ( nf90_close(ncid) )
+
+ deallocate(lsprin,cuprin,lsprout,cuprout)
+
+ enddo !mon=startMon,stopMon
+enddo !yr=startYr,stopYr
+
+print*,''
+print*,'Finished Processing'
+print*,''
+
+end
+
+
+!**********************************************************
+!**********************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopping."
+ endif
+
+end subroutine check
diff --git a/preprocess/scale_merra_gpcp_auto b/preprocess/scale_merra_gpcp_auto
new file mode 100755
index 0000000000000000000000000000000000000000..8e67c6ebd7af9fd470faee5346d8cf217d04d001
Binary files /dev/null and b/preprocess/scale_merra_gpcp_auto differ
diff --git a/preprocess/scale_merra_gpcp_auto.f90 b/preprocess/scale_merra_gpcp_auto.f90
new file mode 100644
index 0000000000000000000000000000000000000000..6ec8bade6b312bfd1f95133d0ec2cd2bf96df742
--- /dev/null
+++ b/preprocess/scale_merra_gpcp_auto.f90
@@ -0,0 +1,388 @@
+!Program to change the precipitation values for the SiB driver files
+!and scale them to GPCP precipitation.
+!
+!Program finds the ratio between the MERRA and GPCP precipitation
+!and multiplies by this ratio to 'scale' the precip.
+!
+!MERRA precip units assumed to be mm/s, with hourly data
+!GPCP precip units assumed to be mm/month, with monthly data
+! --Expects GPCP to be regridded to MERRA resolution!!
+!
+!Program will not change the timing nor 'create' precip in MERRA.
+!
+!NOTE: This will actually change the netcdf file!
+!
+!To compile, use:
+!>pgf90 scale_merra_gpcp.f90 -L/usr/local/netcdf3-pgi/lib -lnetcdf -I/usr/local/netcdf3-pgi/include -o scale_merra_gpcp
+!
+!-or- (if defined)
+!>f90nc scale_merra_gpcp.f90
+!>f90nco scale_merra_gpcp.f90 scale_merra_gpcp
+!
+!-or-
+!>make scale_merra_gpcp
+!
+!kdhaynes, 01/2018
+
+program scale_merra_gpcp
+
+use netcdf
+implicit none
+
+!!!user defined variables
+integer, parameter :: startYr=2018, stopYr=2018
+integer, parameter :: startMon=1, stopMon=1
+
+!.....GPCP v2.3
+!.....(2.5-degree, monthly, units of mm/day)
+character*180, parameter :: &
+ gpcpfile='/projects/0/ctdas/sib4_input/meteo/gpcp/gpcp_0.625dx0.5d_tot.nc'
+
+!....MERRA-2
+character*100, parameter :: &
+ merradir='/projects/0/ctdas/awoude/NRT/input/'
+character*20, parameter :: &
+ merraprefix='merra_'
+
+!!!other MERRA parameters
+!!!assuming 2/3-degree lon by 1/2-degree lat, hourly data
+real*4, parameter :: timeconvert=3600.
+
+!space variables
+integer nlon, nlat
+real, dimension(:), allocatable :: lon, lat
+
+!time variables
+character*3 :: monname(12)
+character*100 :: monlabel
+
+!merra variables
+integer nlonm, nlatm, ntimem
+integer :: merrauaf, merraba
+
+real, dimension(:,:,:), allocatable :: lsprin, cuprin
+real, dimension(:,:,:), allocatable :: lsprout, cuprout
+real, dimension(:,:), allocatable :: merraprecipin, merraprecipout
+real, dimension(:,:), allocatable :: ratio
+
+!gpcp variables
+integer :: ntimeg, gpcpref
+real :: myyrstart, myyrnext
+real, dimension(:), allocatable :: timeg
+real, dimension(:,:,:), allocatable :: gpcpin
+real, dimension(:,:), allocatable :: gpcpprecip
+
+!areal variables
+real :: deltalon, deltalat
+real, dimension(:), allocatable :: lonE, lonW, arlon
+real, dimension(:), allocatable :: latN, latS, arlat
+
+!comparison variables
+integer :: ratioa1, ratiob1, ratio1
+real*8 :: preciptotg, preciptotmin, preciptotmout
+
+!netcdf variables
+integer ncid,dimid,varid,status
+integer nlondid, nlatdid, ntimedid
+integer lsprid, cuprid
+character*20 :: dimname
+character*120 :: merraname
+
+!misc variables
+integer :: i,j, yr, mon
+integer :: mystartmon, mystopmon
+
+!local variables
+real :: radius
+real*8 :: pi
+
+!Define/set variables
+data monname/'Jan','Feb','Mar','Apr','May','Jun', &
+ 'Jul','Aug','Sep','Oct','Nov','Dec'/
+pi = acos(-1.0)
+radius = 6371000.
+
+!Get the GPCP data
+print*,''
+print('(a)'),'GPCP File Information: '
+print('(a,a)'), ' ',trim(gpcpfile)
+status = nf90_open( trim(gpcpfile), nf90_nowrite, ncid )
+IF (status .ne. nf90_noerr) THEN
+ print*,'Error Finding GPCP File. Stopping.'
+ STOP
+ENDIF
+
+status = nf90_inq_dimid(ncid, 'lon', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlon)
+status = nf90_inq_dimid(ncid, 'lat', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, nlat)
+status = nf90_inq_dimid(ncid, 'time', dimid )
+status = nf90_inquire_dimension(ncid, dimid, dimname, ntimeg)
+
+allocate(lon(nlon),lat(nlat),timeg(ntimeg))
+status = nf90_inq_varid(ncid, 'lon', varid )
+status = nf90_get_var(ncid, varid, lon )
+
+status = nf90_inq_varid(ncid, 'lat', varid )
+status = nf90_get_var(ncid, varid, lat )
+
+status = nf90_inq_varid(ncid, 'time', varid )
+status = nf90_get_var(ncid, varid, timeg)
+
+allocate(gpcpin(nlon,nlat,ntimeg))
+allocate(gpcpprecip(nlon,nlat))
+status = nf90_inq_varid(ncid, 'precip', varid )
+status = nf90_get_var(ncid, varid, gpcpin )
+status = nf90_close(ncid)
+
+!....get GPCP time reference start
+IF (startyr .LT. floor(timeg(1))) THEN
+ print*,'Requesting GPCP Data Prior To Available.'
+ print*,'Stopping.'
+ELSEIF (startyr .GT. ceiling(timeg(ntimeg))) THEN
+ print*,'Requesting GPCP Data After Available.'
+ print*,'Stopping.'
+ELSE
+ myyrstart = startyr + real(startMon-0.5)/12.
+ gpcpref = -999
+ DO i=1,ntimeg
+ myyrnext = timeg(i) + 0.5/12.
+ IF ((myyrstart .GE. timeg(i)) .AND. &
+ (myyrstart .LT. myyrnext)) THEN
+ gpcpref = i
+ ENDIF
+ ENDDO
+ IF (gpcpref .lt. 1) THEN
+ print*,'Invalid GPCP Time Requested.'
+ print*,'Stopping.'
+ ENDIF
+ENDIF
+print('(a,i6,f10.2)'),' GPCP Start Ref and Time: ', &
+ gpcpref, timeg(gpcpref)
+
+
+!...get areal variables for precipitation totals
+deltalon=(lon(3)-lon(2))/2.
+deltalat=(lat(3)-lat(2))/2.
+
+allocate(lonE(nlon),lonW(nlon),arlon(nlon))
+do i=1,nlon
+ lonE(i)=lon(i)+deltalon
+ lonW(i)=lon(i)-deltalon
+ arlon(i)=(lonE(i)-lonW(i))/360.
+enddo
+arlon = arlon*2*pi*radius*radius/1.e15
+
+allocate(latS(nlat),latN(nlat),arlat(nlat))
+do j=1,nlat
+ if (j .eq. 1) then
+ latS(j) = -90.
+ latN(j) = (lat(j+1) + lat(j))*0.5
+ elseif (j .eq. 2) then
+ latS(j) = (lat(j-1) + lat(j))*0.5
+ latN(j) = lat(j) + deltalat
+ elseif (j .eq. nlat-1) then
+ latS(j) = lat(j) - deltalat
+ latN(j) = (lat(j) + lat(j+1))*0.5
+ elseif (j .eq. nlat) then
+ latS(j) = (lat(j-1) + lat(j))*0.5
+ latN(j) = 90.
+ else
+ latS(j) = lat(j) - deltalat
+ latN(j) = lat(j) + deltalat
+ endif
+ arlat(j) = -sin(pi*latS(j)/180.) + &
+ sin(pi*latN(j)/180.)
+enddo
+
+!Loop over years/months
+do yr=startYr,stopYr
+ mystartmon=1
+ mystopmon=12
+ IF (yr .eq. startyr) mystartmon=startMon
+ IF (yr .eq. stopyr) mystopmon=stopMon
+
+ do mon=mystartmon,mystopmon
+
+ !Get the GPCP data
+ IF ((gpcpref .GE. 1) .and. (gpcpref .LE. ntimeg)) THEN
+ gpcpprecip(:,:) = gpcpin(:,:,gpcpref)
+ gpcpref = gpcpref + 1
+ ELSE
+ print*,'Requested GPCP Data After Available.'
+ print*,'Stopping.'
+ STOP
+ ENDIF
+
+ !Open the MERRA file to modify
+ write(merraname,'(a,a,i4.4,i2.2,a)') &
+ trim(merradir), trim(merraprefix), yr, mon, '.nc'
+ call check ( nf90_open( trim(merraname), nf90_write, ncid ) )
+
+ call check ( nf90_inq_dimid(ncid, 'time', ntimedid ) )
+ call check ( nf90_inquire_dimension(ncid, ntimedid, dimname, ntimem) )
+
+ !check lon/lat info for MERRA only if first time through loop
+ if (mon .eq. startMon .and. yr .eq. startYr) then
+ call check ( nf90_inq_dimid(ncid, 'lon', nlondid ) )
+ call check ( nf90_inquire_dimension(ncid, nlondid, len=nlonm) )
+ call check ( nf90_inq_dimid(ncid, 'lat', nlatdid ) )
+ call check ( nf90_inquire_dimension(ncid, nlatdid, len=nlatm) )
+
+ IF ((nlonm .NE. nlon) .OR. (nlatm .NE. nlat)) THEN
+ print*,'Mismatching GPCP/MERRA Dimensions'
+ print*,' GPCP Lon/Lat: ',nlon,nlat
+ print*,' MERRA Lon/Lat: ',nlonm,nlatm
+ print*,'Stopping.'
+ STOP
+ ELSE
+ print('(a,2I6,2F10.4)'), &
+ ' Dimensions (nlon/nlat/dlon/dlat): ', &
+ nlonm,nlatm,(lon(3)-lon(2)),lat(3)-lat(2)
+ ENDIF
+
+ allocate(merraprecipin(nlonm,nlatm))
+ allocate(merraprecipout(nlonm,nlatm))
+ allocate(ratio(nlonm,nlatm))
+ ENDIF !yr==startyr, mon==startmon
+
+ print*,''
+ write(monlabel,'(a,a,a,i4.4)') 'Processing ',monname(mon), ' ', yr
+ print('(a)'),trim(monlabel)
+ print('(a)'),' Modifying MERRA File: '
+ print('(a,a)'),' ',trim(merraname)
+
+ allocate(lsprin(nlonm,nlatm,ntimem),cuprin(nlonm,nlatm,ntimem))
+ allocate(lsprout(nlonm,nlatm,ntimem),cuprout(nlonm,nlatm,ntimem))
+ call check ( nf90_inq_varid(ncid, 'lspr', varid ) )
+ call check ( nf90_get_var(ncid, varid, lsprin ) )
+ call check ( nf90_inq_varid(ncid, 'cupr', varid ) )
+ call check ( nf90_get_var(ncid, varid, cuprin ) )
+ lsprout=lsprin
+ cuprout=cuprin
+
+ !Compare the precipitation
+ ratioa1 = 0
+ ratiob1 = 0
+ ratio1 = 0
+ DO i=1,nlon
+ DO j=1,nlat
+ merraprecipin(i,j) = (sum(cuprin(i,j,:)) + sum(lsprin(i,j,:))) &
+ *timeconvert
+ IF (merraprecipin(i,j) .GT. 0.) THEN
+ ratio(i,j) = gpcpprecip(i,j) / merraprecipin(i,j)
+ ELSE
+ ratio(i,j) = 0.
+ ENDIF
+
+ IF (ratio(i,j) .GT. 1.001) THEN
+ ratioa1 = ratioa1 + 1
+ ELSEIF (ratio(i,j) .LT. 0.999) THEN
+ ratiob1 = ratiob1 + 1
+ ELSE
+ ratio1 = ratio1 + 1
+ ENDIF
+
+ cuprout(i,j,:) = cuprout(i,j,:)*ratio(i,j)
+ lsprout(i,j,:) = lsprout(i,j,:)*ratio(i,j)
+ merraprecipout(i,j) = (sum(cuprout(i,j,:)) + sum(lsprout(i,j,:))) &
+ *timeconvert
+ ENDDO !j
+ ENDDO !i
+
+ !Check total precipitations
+ preciptotmin=0.0
+ preciptotmout=0.0
+ preciptotg=0.0
+ DO i=1,nlon
+ DO j=1,nlat
+ preciptotmin = preciptotmin + &
+ merraprecipin(i,j)*arlon(i)*arlat(j)
+ preciptotmout = preciptotmout + &
+ merraprecipout(i,j)*arlon(i)*arlat(j)
+ preciptotg = preciptotg + &
+ gpcpprecip(i,j)*arlon(i)*arlat(j)
+ ENDDO
+ ENDDO
+
+ !Print out stats
+ print*,''
+ print('(a)'),' Monthly Precipitation Totals (kg)'
+ print('(a,E14.5)'),' MERRA Original: ',preciptotmin
+ print('(a,E14.5)'),' MERRA Scaled: ',preciptotmout
+ print('(a,E14.5)'),' GPCP: ',preciptotg
+
+ print*,''
+ print('(a)'),' Ratio Information: '
+ print('(a,2E14.5)'),' Ratio Min/Max: ',minval(ratio), maxval(ratio)
+ print('(a,I8)'), ' # > 1.0: ', ratioa1
+ print('(a,I8)'), ' # < 1.0: ', ratiob1
+ print('(a,I8)'), ' # = 1.0: ', ratio1
+ print('(a,I8)'), ' TOTAL: ', ratioa1+ratiob1+ratio1
+
+ !Write out the new scaled data
+ status = nf90_inq_varid(ncid, 'lspr_scaled', lsprid )
+ if (status .ne. 0) then
+ call check ( nf90_redef(ncid) )
+ call check ( nf90_def_var( ncid, 'lspr_scaled', nf90_float, &
+ (/nlondid,nlatdid,ntimedid/), lsprid ) )
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'long_name','Scaled Large Scale Precip'))
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'title', 'LSPR Scaled To GPCP v2.3'))
+ call check ( nf90_put_att(ncid, lsprid, &
+ 'units', 'mm/s'))
+ call check ( nf90_enddef( ncid ) )
+ endif
+
+ status = nf90_inq_varid(ncid, 'cupr_scaled', cuprid )
+ if (status .ne. 0) then
+ call check ( nf90_redef(ncid) )
+ call check ( nf90_def_var( ncid, 'cupr_scaled', nf90_float, &
+ (/nlondid,nlatdid,ntimedid/), cuprid ) )
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'long_name','Scaled Convective Precip'))
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'title', 'CUPR Scaled to GPCP v2.3'))
+ call check ( nf90_put_att( ncid, cuprid, &
+ 'units', 'mm/s'))
+ call check ( nf90_enddef( ncid ) )
+ endif
+
+ !!!Setting all precip to large-scale!!!
+ !lsprout = lsprout + cuprout
+ !cuprout = 0.
+
+ call check ( nf90_put_var( ncid, lsprid, lsprout) )
+ call check ( nf90_put_var( ncid, cuprid, cuprout) )
+ call check ( nf90_close(ncid) )
+
+ deallocate(lsprin,cuprin,lsprout,cuprout)
+
+ enddo !mon=startMon,stopMon
+enddo !yr=startYr,stopYr
+
+print*,''
+print*,'Finished Processing'
+print*,''
+
+end
+
+
+!**********************************************************
+!**********************************************************
+
+subroutine check(status)
+
+use netcdf
+use typeSizes
+
+implicit none
+
+integer, intent(in) :: status
+
+ if (status /= nf90_noerr) then
+ stop "Error with netcdf. Stopping."
+ endif
+
+end subroutine check
diff --git a/preprocess/scale_merra_gpcp_auto.o b/preprocess/scale_merra_gpcp_auto.o
new file mode 100644
index 0000000000000000000000000000000000000000..12129859306659a5c2c2bb33d8f6bed52f7e27c8
Binary files /dev/null and b/preprocess/scale_merra_gpcp_auto.o differ
diff --git a/preprocess/sib4_prior.sh b/preprocess/sib4_prior.sh
new file mode 100644
index 0000000000000000000000000000000000000000..5dbb77e748553dee97bef14e9c7066d83e41f3cc
--- /dev/null
+++ b/preprocess/sib4_prior.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+
+YEAR_START=2018
+YEAR_STOP=2018
+MONTH_START=1
+MONTH_STOP=1
+
+ORIG_DIR="/scratch/shared/awoude//MERRA/"
+PROC_DIR="/projects/0/ctdas/awoude/NRT/input/"
+
+#bash getmerra_auto $YEAR_START $MONTH_START $MONTH_END $ORIG_DIR
+
+sed -i "s/startYr=[^,]*/startYr=$YEAR_START/g" merra_pullvar_auto.f90
+sed -i "s/stopYr=[^,]*/stopYr=$YEAR_STOP/g" merra_pullvar_auto.f90
+sed -i "s/startMon=[^,]*/startMon=$MONTH_START/g" merra_pullvar_auto.f90
+sed -i "s/stopMon=[^,]*/stopMon=$MONTH_STOP/g" merra_pullvar_auto.f90
+sed -i "s|filedir=[^,]*|filedir=\'$ORIG_DIR\'|g" merra_pullvar_auto.f90
+sed -i "s|outdir=[^,]*|outdir=\'$PROC_DIR\'|g" merra_pullvar_auto.f90
+#
+make merra_pullvar_auto
+./merra_pullvar_auto
+#
+sed -i "s|merradir=[^,]*|merradir=\'$PROC_DIR\'|g" scale_merra_gpcp_auto.f90
+sed -i "s/startYr=[^,]*/startYr=$YEAR_START/g" scale_merra_gpcp_auto.f90
+sed -i "s/stopYr=[^,]*/stopYr=$YEAR_STOP/g" scale_merra_gpcp_auto.f90
+sed -i "s/startMon=[^,]*/startMon=$MONTH_START/g" scale_merra_gpcp_auto.f90
+sed -i "s/stopMon=[^,]*/stopMon=$MONTH_STOP/g" scale_merra_gpcp_auto.f90
+#
+make scale_merra_gpcp_auto
+./scale_merra_gpcp_auto
+#
+sed -i "s|inputdir=[^,]*|inputdir=\'$PROC_DIR\'|g" merra_pullsib_auto.f90
+sed -i "s|outputdir=[^,]*|outputdir=\'$PROC_DIR\'|g" merra_pullsib_auto.f90
+sed -i "s/startYr=[^,]*/startYr=$YEAR_START/g" merra_pullsib_auto.f90
+sed -i "s/stopYr=[^,]*/stopYr=$YEAR_STOP/g" merra_pullsib_auto.f90
+sed -i "s/startmon=[^,]*/startmon=$MONTH_START/g" merra_pullsib_auto.f90
+sed -i "s/stopmon=[^,]*/stopmon=$MONTH_STOP/g" merra_pullsib_auto.f90
+#
+make merra_pullsib_auto
+./merra_pullsib_auto
diff --git a/privatemodules/.DS_Store b/privatemodules/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..6dae352bdb88d8014d9d49df9a19c7bdce6975e1
Binary files /dev/null and b/privatemodules/.DS_Store differ
diff --git a/privatemodules/.bashrc b/privatemodules/.bashrc
new file mode 100644
index 0000000000000000000000000000000000000000..3bc80bb08f839582027c5b4c3ebbc8b4b784cd7d
--- /dev/null
+++ b/privatemodules/.bashrc
@@ -0,0 +1,180 @@
+# .bashrc
+
+# Source global definitions
+if [ -f /etc/bashrc ]; then
+ . /etc/bashrc
+fi
+
+module load pre2019
+module load python/2.7.9
+#module load fortran/intel lapack/netlib/intel blas/netlib/intel
+
+#module load hdf5/serial/intel/1.8.10-patch1
+#module load netcdf
+
+#module load hdf4/intel/4.2.9
+#module load hdf5/impi/intel/1.8.9
+#module load netcdf/impi/intel/4.1.3
+#module load szip/intel/2.1
+
+#module load mkl
+module load nco
+module load cdo
+
+# SiBCASA
+#module load fortran/intel lapack/netlib/intel blas/netlib/intel
+#module load hdf4/intel/4.2.9
+#module load hdf5/serial/intel/1.8.10-patch1
+#module load netcdf/serial/intel
+
+# SiB4
+module load atlas
+module load gcc/5.2.0
+export LD_LIBRARY_PATH=/home/kooij032/privatemodules/nc4/lib/
+
+# TM5
+#module load use.own
+#export UDUNITS_PATH=/home/ivdvelde/local/udunits/etc/udunits.dat
+#export PATH=$PATH:/home/ivdvelde/local:/usr/bin
+#export SVN_EDITOR=vim
+
+# Load aliases
+alias sq="squeue -u kooij032"
+alias ncdump='/home/kooij032/privatemodules/nc4/bin/ncdump'
+
+
+# User specific aliases and functions
+# Step 3.
+
+# ~/.bashrc: executed by bash(1) for non-login shells.
+# see /usr/share/doc/bash/examples/startup-files (in the package bash-doc)
+# for examples
+
+# If not running interactively, don't do anything
+[ -z "$PS1" ] && return
+
+# don't put duplicate lines in the history. See bash(1) for more options
+# ... or force ignoredups and ignorespace
+HISTCONTROL=ignoredups:ignorespace
+
+# append to the history file, don't overwrite it
+shopt -s histappend
+
+# for setting history length see HISTSIZE and HISTFILESIZE in bash(1)
+HISTSIZE=1000
+HISTFILESIZE=2000
+
+# check the window size after each command and, if necessary,
+# update the values of LINES and COLUMNS.
+shopt -s checkwinsize
+
+# make less more friendly for non-text input files, see lesspipe(1)
+[ -x /usr/bin/lesspipe ] && eval "$(SHELL=/bin/sh lesspipe)"
+
+# set variable identifying the chroot you work in (used in the prompt below)
+if [ -z "$debian_chroot" ] && [ -r /etc/debian_chroot ]; then
+ debian_chroot=$(cat /etc/debian_chroot)
+fi
+
+# load Solarized palette automaticly
+if [ -x /usr/bin/dircolors ]; then
+ test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
+fi
+
+# set a fancy prompt (non-color, unless we know we "want" color)
+case "$TERM" in
+ xterm-color) color_prompt=yes;;
+esac
+
+# uncomment for a colored prompt, if the terminal has the capability; turned
+# off by default to not distract the user: the focus in a terminal window
+# should be on the output of commands, not on the prompt
+#force_color_prompt=yes
+
+if [ -n "$force_color_prompt" ]; then
+ if [ -x /usr/bin/tput ] && tput setaf 1 >&/dev/null; then
+ # We have color support; assume it's compliant with Ecma-48
+ # (ISO/IEC-6429). (Lack of such support is extremely rare, and such
+ # a case would tend to support setf rather than setaf.)
+ color_prompt=yes
+ else
+ color_prompt=
+ fi
+fi
+
+if [ "$color_prompt" = yes ]; then
+ PS1='${debian_chroot:+($debian_chroot)}\u\[\033[01;32m\]\u@\h\[\033[00m\]:\[\033[01;34m\]\w\[\033[00m\]\$ '
+else
+ PS1='${debian_chroot:+($debian_chroot)}\u@\h:\W\$ '
+fi
+unset color_prompt force_color_prompt
+
+# If this is an xterm set the title to user@host:dir
+case "$TERM" in
+xterm*|rxvt*)
+ PS1="\[\e]0;${debian_chroot:+($debian_chroot)}\u@\h: \w\a\]$PS1"
+ ;;
+*)
+ ;;
+esac
+
+# enable color support of ls and also add handy aliases
+if [ -x /usr/bin/dircolors ]; then
+ test -r ~/.dircolors && eval "$(dircolors -b ~/.dircolors)" || eval "$(dircolors -b)"
+ alias ls='ls --color=auto'
+ #alias dir='dir --color=auto'
+ #alias vdir='vdir --color=auto'
+
+ alias grep='grep --color=auto'
+ alias fgrep='fgrep --color=auto'
+ alias egrep='egrep --color=auto'
+fi
+
+# some more ls aliases
+alias ll='ls -halF'
+alias la='ls -A'
+alias l='ls -CF'
+
+# Add an "alert" alias for long running commands. Use like so:
+# sleep 10; alert
+alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'
+
+# Alias definitions.
+# You may want to put all your additions into a separate file like
+# ~/.bash_aliases, instead of adding them here directly.
+# See /usr/share/doc/bash-doc/examples in the bash-doc package.
+
+if [ -f ~/.bash_aliases ]; then
+ . ~/.bash_aliases
+fi
+
+# enable programmable completion features (you don't need to enable
+# this, if it's already enabled in /etc/bash.bashrc and /etc/profile
+# sources /etc/bash.bashrc).
+if [ -f /etc/bash_completion ] && ! shopt -oq posix; then
+ . /etc/bash_completion
+fi
+
+# Parse git for clean dir
+function parse_git_dirty {
+ [[ "$(git status 2> /dev/null | tail -n1)" != "nothing to commit (working directory clean)" ]] && echo "*"
+}
+
+# To display git branch
+function parse_git_branch {
+ git branch --no-color 2> /dev/null | sed -e '/^[^*]/d' -e "s/* \(.*\)/[\1$(parse_git_dirty)]/"
+}
+
+if [[ ${EUID} == 0 ]] ; then
+ PS1='\[\033[01;31m\]\u@\h \[\033[01;34m\]\w\[\033[01;35m\]$(parse_git_branch)\[\033[01;34m\] \$ \[\033[00m\]'
+else
+ PS1='\[\033[01;00m\]\u:\w\[\033[00;33m\]$(parse_git_branch)\[\033[00m\] \$ '
+fi
+
+# Change the window title of X terminals
+PROMPT_COMMAND='echo -ne "\033]0;${USER}@${HOSTNAME%%.*}:${PWD/$HOME/~}\007"'
+
+# End of Git branch config
+
+export PATH=$PATH:~/privatemodules/nc4/bin
+
diff --git a/privatemodules/nc4/bin/gif2h5 b/privatemodules/nc4/bin/gif2h5
new file mode 100755
index 0000000000000000000000000000000000000000..d4212e21fbb9dae04e5970bd794351a54a221a55
Binary files /dev/null and b/privatemodules/nc4/bin/gif2h5 differ
diff --git a/privatemodules/nc4/bin/h52gif b/privatemodules/nc4/bin/h52gif
new file mode 100755
index 0000000000000000000000000000000000000000..0ac8947454c471ae45ae63d694ceaa6c3ea38b55
Binary files /dev/null and b/privatemodules/nc4/bin/h52gif differ
diff --git a/privatemodules/nc4/bin/h5cc b/privatemodules/nc4/bin/h5cc
new file mode 100755
index 0000000000000000000000000000000000000000..ec1b2a3dcf421ed6826b99d42ac8cefeaca1c037
--- /dev/null
+++ b/privatemodules/nc4/bin/h5cc
@@ -0,0 +1,401 @@
+#! /bin/sh
+##
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+##
+
+# This tool is adapted from the mpicc command of the MPICH Software.
+
+############################################################################
+## ##
+## Things You May Have to Modify: ##
+## ##
+## If the following paths don't point to the place were HDF5 is installed ##
+## on your system (i.e., you received a binary distribution or moved the ##
+## files from the originally installed directory to another directory) ##
+## then modify them accordingly to represent the new paths. ##
+## ##
+############################################################################
+prefix="/home/erikvs/privatemodules/nc4"
+exec_prefix="${prefix}"
+libdir="${exec_prefix}/lib"
+includedir="${prefix}/include"
+HL="hl"
+
+############################################################################
+## ##
+## Things You Can Modify to Override HDF5 Library Build Components: ##
+## ##
+## (Advanced usage - know what you're doing - you're on your own here.) ##
+## The four variables below can be used to insert paths and flags in ##
+## CPPFLAGS, CFLAGS, LDFLAGS, or LIBS in the h5cc compile line: ##
+## $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS ##
+## $LIBS $clibpath $link_objs $link_args $shared_link ##
+## ##
+## These settings can be overriden by setting HDF5_CFLAGS, ##
+## HDF5_CPPFLAGS, HDF5_LDFLAGS, or HDF5_LIBS in the environment. ##
+## ##
+############################################################################
+CFLAGSBASE=""
+CPPFLAGSBASE=""
+LDFLAGSBASE=""
+LIBSBASE=""
+
+############################################################################
+## ##
+## You shouldn't have to modify anything below this line. ##
+## ##
+############################################################################
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+host_os="linux-gnu"
+
+prog_name="`basename $0`"
+
+allargs=""
+compile_args=""
+libraries=""
+link_args=""
+link_objs=""
+clibpath=""
+
+do_link="yes"
+do_compile="no"
+dash_o="no"
+dash_c="no"
+get_output_file="no"
+
+SHOW="eval"
+CCBASE="gcc"
+CLINKERBASE="gcc"
+
+# CFLAGS, CPPFLAGS and LDFLAGS are reserved for use by the script user.
+# FLAGS brought from the hdf5 build are put in H5BLD_*FLAGS.
+
+# User's CPPFLAGS and CFLAGS come after their H5BLD counterparts. User's
+# LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+# before the hdf5 libraries in $link_args, followed by any external library
+# paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
+# from the hdf5 build. The order of the flags is intended to give precedence
+# to the user's flags.
+H5BLD_CFLAGS=" -fPIC"
+H5BLD_CPPFLAGS="-I/home/erikvs/privatemodules/nc4/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE "
+H5BLD_LDFLAGS=" -L/home/erikvs/privatemodules/nc4/lib "
+H5BLD_LIBS=" -lz -ldl -lm "
+
+CC="${HDF5_CC:-$CCBASE}"
+CLINKER="${HDF5_CLINKER:-$CLINKERBASE}"
+CFLAGS="${HDF5_CFLAGS:-$CFLAGSBASE}"
+CPPFLAGS="${HDF5_CPPFLAGS:-$CPPFLAGSBASE}"
+LDFLAGS="${HDF5_LDFLAGS:-$LDFLAGSBASE}"
+LIBS="${HDF5_LIBS:-$LIBSBASE}"
+
+# If a static library is available, the default will be to use it. If the only
+# available library is shared, it will be used by default. The user can
+# override either default, although choosing an unavailable library will result
+# in link errors.
+STATIC_AVAILABLE="yes"
+if test "${STATIC_AVAILABLE}" = "yes"; then
+ USE_SHARED_LIB="${HDF5_USE_SHLIB:-no}"
+else
+ USE_SHARED_LIB="${HDF5_USE_SHLIB:-yes}"
+fi
+
+
+usage() {
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS] <compile line>"
+ echo " OPTIONS:"
+ echo " -help This help message."
+ echo " -echo Show all the shell commands executed"
+ echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: $prefix]"
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS] <compile line>"
+ echo " OPTIONS:"
+ echo " -help This help message."
+ echo " -echo Show all the shell commands executed"
+ echo " -prefix=DIR Prefix directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: $prefix]"
+ echo " -show Show the commands without executing them"
+ echo " -showconfig Show the HDF5 library configuration summary"
+ echo " -shlib Compile with shared HDF5 libraries [default for hdf5 built"
+ echo " without static libraries]"
+ echo " -noshlib Compile with static HDF5 libraries [default for hdf5 built"
+ echo " with static libraries]"
+ echo " "
+ echo " <compile line> - the normal compile line options for your compiler."
+ echo " $prog_name uses the same compiler you used to compile"
+ echo " HDF5. Check with your compiler's man pages for more"
+ echo " information on which options are needed."
+ echo " "
+ echo " You can override the compiler, linker, and whether or not to use static"
+ echo " or shared libraries to compile your program by setting the following"
+ echo " environment variables accordingly:"
+ echo " "
+ echo " HDF5_CC - use a different C compiler"
+ echo " HDF5_CLINKER - use a different linker"
+ echo " HDF5_USE_SHLIB=[yes|no] - use shared or static version of the HDF5 library"
+ echo " [default: no except when built with only"
+ echo " shared libraries]"
+ echo " "
+ echo " You can also add or change paths and flags to the compile line using"
+ echo " the following environment varibles or by assigning them to their counterparts"
+ echo " in the 'Things You Can Modify to Override...'" section of $prog_name
+ echo " "
+ echo " Variable Current value to be replaced"
+ echo " HDF5_CPPFLAGS \"$CPPFLAGSBASE\""
+ echo " HDF5_CFLAGS \"$CFLAGSBASE\""
+ echo " HDF5_LDFLAGS \"$LDFLAGSBASE\""
+ echo " HDF5_LIBS \"$LIBSBASE\""
+ echo " "
+ echo " Note that adding library paths to HDF5_LDFLAGS where another hdf5 version"
+ echo " is located may link your program with that other hdf5 library version."
+ echo " "
+ exit $EXIT_FAILURE
+}
+
+# Show the configuration summary of the library recorded in the
+# libhdf5.settings file reside in the lib directory.
+showconfigure()
+{
+ cat ${libdir}/libhdf5.settings
+ status=$?
+}
+
+# Main
+status=$EXIT_SUCCESS
+
+if test "$#" = "0"; then
+ # No parameters specified, issue usage statement and exit.
+ usage
+fi
+
+case "$CC" in
+ gcc)
+ kind="gcc"
+ ;;
+ mpicc|mpcc|mpicc_r)
+ # Is this gcc masquarading as an MPI compiler?
+ if test "`${CC} -v 2>&1 | sed -n 2p | cut -c1-3`" = "gcc"; then
+ kind="gcc"
+ else
+ # Nope
+ kind="$host_os"
+ fi
+ ;;
+ *)
+ kind="$host_os"
+ ;;
+esac
+
+for arg in $@ ; do
+ if test "x$get_output_file" = "xyes"; then
+ link_args="$link_args $arg"
+ output_file="$arg"
+ get_output_file="no"
+ continue
+ fi
+
+ case "$arg" in
+ -c)
+ allargs="$allargs $arg"
+ compile_args="$compile_args $arg"
+
+ if test "x$do_link" = "xyes" -a -n "$output_file"; then
+ compile_args="$compile_args -o $outputfile"
+ fi
+
+ do_link="no"
+ dash_c="yes"
+ ;;
+ -o)
+ allargs="$allargs $arg"
+ dash_o="yes"
+
+ if test "x$dash_c" = "xyes"; then
+ compile_args="$compile_args $arg"
+ else
+ link_args="$link_args $arg"
+ do_link="yes"
+ get_output_file="yes"
+ fi
+ ;;
+ -E|-M|-MT)
+ allargs="$allargs $arg"
+ compile_args="$compile_args $arg"
+ dash_c="yes"
+ do_link="no"
+ ;;
+ -l*)
+ libraries=" $libraries $arg "
+ allargs="$allargs $arg"
+ ;;
+ -prefix=*)
+ prefix="`expr "$arg" : '-prefix=\(.*\)'`"
+ ;;
+ -echo)
+ set -x
+ ;;
+ -show)
+ SHOW="echo"
+ ;;
+ -showconfig)
+ showconfigure
+ exit $status
+ ;;
+ -shlib)
+ USE_SHARED_LIB="yes"
+ ;;
+ -noshlib)
+ USE_SHARED_LIB="no"
+ ;;
+ -help)
+ usage
+ ;;
+ *\"*)
+ qarg="'"$arg"'"
+ allargs="$allargs $qarg"
+ ;;
+ *\'*)
+ qarg='\"'"$arg"'\"'
+ allargs="$allargs $qarg"
+ ;;
+ *)
+ allargs="$allargs $qarg"
+
+ if test -s "$arg"; then
+ ext=`expr "$arg" : '.*\(\..*\)'`
+
+ if test "x$ext" = "x.c"; then
+ do_compile="yes"
+ compile_args="$compile_args $arg"
+ fname=`basename $arg .c`
+ link_objs="$link_objs $fname.o"
+ elif test "x$ext" = "x.o"; then
+ if test "x$dash_c" = "xyes"; then
+ compile_args="$compile_args $arg"
+ else
+ do_link="yes"
+ link_objs="$link_objs $arg"
+ fi
+ elif test "x$ext" = "x.a"; then
+ # This is an archive that we're linking in
+ libraries=" $libraries $arg "
+ else
+ compile_args="$compile_args $arg"
+ link_args="$link_args $arg"
+ fi
+ else
+ compile_args="$compile_args $arg"
+ link_args="$link_args $arg"
+ fi
+ ;;
+ esac
+done
+
+if test "$dash_c" = "yes" -a "$do_compile" = no -a "$do_link" = no ; then
+ # -c was specified. Force do_compile on.
+ do_compile=yes
+fi
+
+if test "x$do_compile" = "xyes"; then
+ if test "x$dash_c" != "xyes"; then
+ compile_args="-c $compile_args"
+ fi
+
+ $SHOW $CC -I$includedir $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $compile_args
+ status=$?
+
+ if test "$status" != "0"; then
+ exit $status
+ fi
+fi
+
+if test "x$do_link" = "xyes"; then
+ shared_link=""
+# conditionnaly link with the hl library
+ if test "X$HL" = "Xhl"; then
+ libraries=" $libraries -lhdf5_hl -lhdf5 "
+ else
+ libraries=" $libraries -lhdf5 "
+ fi
+ link_args="$link_args -L${libdir}"
+
+ case "$kind" in
+ gcc|linux*)
+ # MacOS X doesn't support the "-Wl,-rpath -Wl," style of linker flags.
+ # It appears to want none of them specified.
+ case "$host_os" in
+ darwin*) flag="" ;;
+ *) flag="-Wl,-rpath -Wl," ;;
+ esac
+ ;;
+ hpux*) flag="-Wl,+b -Wl," ;;
+ freebsd*|solaris*) flag="-R" ;;
+ rs6000*|aix*) flag="-L" ;;
+ irix*|sgi) flag="-rpath " ;;
+ *) flag="" ;;
+ esac
+
+ if test -n "$flag"; then
+ shared_link="${flag}${libdir}"
+ fi
+
+ if test "x$USE_SHARED_LIB" != "xyes"; then
+ # The "-lhdf5" & "-lhdf5_hl" flags are in here already...This is a static
+ # compile though, so change it to the static version (.a) of the library.
+ new_libraries=""
+ for lib in $libraries; do
+ case "$lib" in
+ -lhdf5)
+ new_libraries="$new_libraries ${libdir}/libhdf5.a"
+ ;;
+ -lhdf5_hl)
+ new_libraries="$new_libraries ${libdir}/libhdf5_hl.a"
+ ;;
+ *)
+ new_libraries="$new_libraries $lib"
+ ;;
+ esac
+ done
+ libraries="$new_libraries"
+ fi
+
+ for lib in $libraries; do
+ if echo $link_args | grep " $lib " > /dev/null ||
+ echo $link_args | grep " $lib$" > /dev/null; then
+ :
+ else
+ link_args="$link_args $lib "
+ fi
+ done
+
+ # The LIBS are just a bunch of -l* libraries necessary for the HDF5
+ # module. It's okay if they're included twice in the compile line.
+ link_args="$link_args $H5BLD_LDFLAGS $H5BLD_LIBS"
+
+ # User's CPPFLAGS and CFLAGS come after their H5BLD counterparts. User's
+ # LDFLAGS come just before clibpath, user's LIBS come after $link_objs and
+ # before the hdf5 libraries in $link_args, followed by any external library
+ # paths and libraries from AM_LDFLAGS, LDFLAGS, AM_LIBS or LIBS carried in
+ # from the hdf5 build. The order of the flags is intended to give precedence
+ # to the user's flags.
+ $SHOW $CLINKER $H5BLD_CPPFLAGS $CPPFLAGS $H5BLD_CFLAGS $CFLAGS $LDFLAGS $clibpath $link_objs $LIBS $link_args $shared_link
+ status=$?
+fi
+
+exit $status
diff --git a/privatemodules/nc4/bin/h5copy b/privatemodules/nc4/bin/h5copy
new file mode 100755
index 0000000000000000000000000000000000000000..e22eba5a1d9ee352c13ddcc531a39d4e60835125
Binary files /dev/null and b/privatemodules/nc4/bin/h5copy differ
diff --git a/privatemodules/nc4/bin/h5debug b/privatemodules/nc4/bin/h5debug
new file mode 100755
index 0000000000000000000000000000000000000000..8c0ac0075b766528d6bfe719df289a602c3a45b6
Binary files /dev/null and b/privatemodules/nc4/bin/h5debug differ
diff --git a/privatemodules/nc4/bin/h5diff b/privatemodules/nc4/bin/h5diff
new file mode 100755
index 0000000000000000000000000000000000000000..f90bcd31abdac14507101f25192ad48d0b4734f2
Binary files /dev/null and b/privatemodules/nc4/bin/h5diff differ
diff --git a/privatemodules/nc4/bin/h5dump b/privatemodules/nc4/bin/h5dump
new file mode 100755
index 0000000000000000000000000000000000000000..623e25e53b031eb0cff7e8a74cce486033eb3d1a
Binary files /dev/null and b/privatemodules/nc4/bin/h5dump differ
diff --git a/privatemodules/nc4/bin/h5import b/privatemodules/nc4/bin/h5import
new file mode 100755
index 0000000000000000000000000000000000000000..3925beeb8d196421ba96f7a9ef299fbc103cd662
Binary files /dev/null and b/privatemodules/nc4/bin/h5import differ
diff --git a/privatemodules/nc4/bin/h5jam b/privatemodules/nc4/bin/h5jam
new file mode 100755
index 0000000000000000000000000000000000000000..5ef81a55102784659880eb6616560b1b290f6b42
Binary files /dev/null and b/privatemodules/nc4/bin/h5jam differ
diff --git a/privatemodules/nc4/bin/h5ls b/privatemodules/nc4/bin/h5ls
new file mode 100755
index 0000000000000000000000000000000000000000..da3b5130c0c0d6ea5f5cbfe73edbc7be4fa379d4
Binary files /dev/null and b/privatemodules/nc4/bin/h5ls differ
diff --git a/privatemodules/nc4/bin/h5mkgrp b/privatemodules/nc4/bin/h5mkgrp
new file mode 100755
index 0000000000000000000000000000000000000000..3242e0107b7defae320678ff51e51ec629e3f9a4
Binary files /dev/null and b/privatemodules/nc4/bin/h5mkgrp differ
diff --git a/privatemodules/nc4/bin/h5perf_serial b/privatemodules/nc4/bin/h5perf_serial
new file mode 100755
index 0000000000000000000000000000000000000000..728d8596702e8847e334b8f6473bd68884fada34
Binary files /dev/null and b/privatemodules/nc4/bin/h5perf_serial differ
diff --git a/privatemodules/nc4/bin/h5redeploy b/privatemodules/nc4/bin/h5redeploy
new file mode 100755
index 0000000000000000000000000000000000000000..6b6ef87db477e3d3edae79284eb8b75379a53c7f
--- /dev/null
+++ b/privatemodules/nc4/bin/h5redeploy
@@ -0,0 +1,218 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+#
+
+## Update HDF5 compiler tools after the HDF5 software has been installed ##
+## in a new location. ##
+## For help page, use "h5redeploy -help" ##
+## ##
+
+# Constants definitions
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+# Function definitions
+
+# show help page
+usage() {
+ # A wonderfully informative "usage" message.
+ echo "usage: $prog_name [OPTIONS]"
+ echo " OPTIONS:"
+ echo " -help|help This help message"
+ echo " -echo Show all the shell commands executed"
+ echo " -force No prompt, just do it"
+ echo " -prefix=DIR New directory to find HDF5 lib/ and include/"
+ echo " subdirectories [default: current directory]"
+ echo " -exec-prefix=DIR New directory to find HDF5 lib/"
+ echo " subdirectory [default: <prefix>]"
+ echo " -libdir=DIR New directory for the HDF5 lib directory"
+ echo " [default: <exec-prefix>/lib]"
+ echo " -includedir=DIR New directory for the HDF5 header files"
+ echo " [default: <prefix>/include]"
+ echo " -tool=TOOL Tool to update. TOOL must be in the current"
+ echo " directory and writable. [default: $h5tools]"
+ echo " -show Show the commands without executing them"
+ echo " "
+ exit $EXIT_FAILURE
+}
+
+# display variable values
+dump_vars(){
+ echo "====Showing all variable values====="
+ echo prefix=$prefix
+ echo h5tools=$h5tools
+ echo "====End Showing====="
+}
+
+# show actions to be taken
+show_action()
+{
+ echo "Update the following tools because they are now installed at a new directory"
+ for t in $foundtools; do
+ echo "${t}:"
+ echo " current setting=`sed -e '/^prefix=/s/prefix=//p' -e d $t`"
+ echo " new setting="\""$prefix"\"
+ done
+}
+
+
+# Report Error message
+ERROR()
+{
+ echo "***ERROR***"
+ echo "$1"
+}
+
+# Main
+#
+############################################################################
+## Installation directories: ##
+## prefix architecture-independent files. ##
+## exec_prefix architecture-dependent files, default is <prefix>. ##
+## libdir libraries, default is <exec_prefix>/lib. ##
+## includedir header files, default is <prefix/include>. ##
+## Not used here: ##
+## bindir executables, <exec_prefix/bin>. ##
+############################################################################
+# Initialization
+h5tools="h5cc h5pcc h5fc h5pfc h5c++" # possible hdf5 tools
+foundtools= # tools found and will be modified
+fmode= # force mode, default is off
+prefix=
+exec_prefix=
+libdir=
+includedir=
+
+# Parse options
+for arg in $@ ; do
+ case "$arg" in
+ -prefix=*)
+ prefix="`echo $arg | cut -f2 -d=`"
+ ;;
+ -exec-prefix=*)
+ exec_prefix="`echo $arg | cut -f2 -d=`"
+ ;;
+ -libdir=*)
+ libdir="`echo $arg | cut -f2 -d=`"
+ ;;
+ -includedir=*)
+ includedir="`echo $arg | cut -f2 -d=`"
+ ;;
+ -echo)
+ set -x
+ ;;
+ -show)
+ SHOW="echo"
+ ;;
+ -tool=*)
+ h5tools="`echo $arg | cut -f2 -d=`"
+ ;;
+ -help|help)
+ usage
+ ;;
+ -force)
+ fmode=yes
+ ;;
+ *)
+ ERROR "Unknown Option($arg)"
+ usage
+ exit $EXIT_FAILURE
+ ;;
+ esac
+done
+
+# Set to default value, one above where i am, if not given by user
+if [ -z "$prefix" ]; then
+ prefix=`(cd ..;pwd)`
+fi
+if [ -z "$exec_prefix" ]; then
+ exec_prefix='${prefix}' # use single quotes to prevent expansion of $
+fi
+if [ -z "$libdir" ]; then
+ libdir='${exec_prefix}'/lib # use single quotes to prevent expansion of $
+fi
+if [ -z "$includedir" ]; then
+ includedir='${prefix}'/include # use single quotes to prevent expansion of $
+fi
+
+for x in $h5tools; do
+ if [ -f $x ]; then
+ foundtools="$foundtools $x"
+ if [ ! -w $x ]; then
+ ERROR "h5tool($x) is not writable"
+ exit $EXIT_FAILURE
+ fi
+ fi
+done
+
+if [ -z "$foundtools" ]; then
+ ERROR "found no tools to modify"
+ exit $EXIT_FAILURE
+fi
+
+# Show actions to be taken and get consent
+show_action
+# Ask confirmation unless fmode is on
+if [ x-$fmode = x- ]; then
+ echo "Continue? (yes/no)"
+ read ansx
+ ans=`echo $ansx | tr "[A-Z]" "[a-z]"`
+ if [ x-$ans != x-yes ]; then
+ echo ABORT. No tools changed.
+ exit $EXIT_FAILURE
+ fi
+fi
+
+
+# Create the update commands
+CMDFILE=/tmp/h5redeploy.$$
+touch $CMDFILE
+chmod 0600 $CMDFILE
+echo "/^prefix=/c" >> $CMDFILE
+echo prefix=\""$prefix"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^exec_prefix=/c" >> $CMDFILE
+echo exec_prefix=\""$exec_prefix"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^libdir=/c" >> $CMDFILE
+echo libdir=\""$libdir"\" >> $CMDFILE
+echo . >> $CMDFILE
+echo "/^includedir=/c" >> $CMDFILE
+echo includedir=\""$includedir"\" >> $CMDFILE
+echo . >> $CMDFILE
+(echo w; echo q) >> $CMDFILE
+
+
+# Update them
+if [ "$SHOW" = "echo" ]; then
+ echo "===Update commands are:===="
+ cat $CMDFILE
+ echo "===End Update commands====="
+fi
+
+for t in $foundtools; do
+ echo Update $t ...
+ COMMAND="ed - $t"
+ if [ "$SHOW" = "echo" ]; then
+ echo $COMMAND
+ else
+ $COMMAND < $CMDFILE
+ fi
+done
+
+
+# Cleanup
+rm -f $CMDFILE
+exit $EXIT_SUCCESS
diff --git a/privatemodules/nc4/bin/h5repack b/privatemodules/nc4/bin/h5repack
new file mode 100755
index 0000000000000000000000000000000000000000..c1d1947ad4c06ffc954c02091ef580f1d5c5de34
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diff --git a/privatemodules/nc4/bin/h5repart b/privatemodules/nc4/bin/h5repart
new file mode 100755
index 0000000000000000000000000000000000000000..fefabdc4f31b89108a6c2a189f349a910f0922ca
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diff --git a/privatemodules/nc4/bin/h5stat b/privatemodules/nc4/bin/h5stat
new file mode 100755
index 0000000000000000000000000000000000000000..b5a2baccb31f7357ebd1b98399795fe3d33f2fba
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diff --git a/privatemodules/nc4/bin/h5unjam b/privatemodules/nc4/bin/h5unjam
new file mode 100755
index 0000000000000000000000000000000000000000..3662bb1f2d074ad79e721f3d49e1bf5e0805e0ec
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diff --git a/privatemodules/nc4/bin/nc-config b/privatemodules/nc4/bin/nc-config
new file mode 100755
index 0000000000000000000000000000000000000000..26511b48af4f06040c161a0b67904fd8c1274578
--- /dev/null
+++ b/privatemodules/nc4/bin/nc-config
@@ -0,0 +1,305 @@
+#! /bin/sh
+#
+# This forms the basis for the nc-config utility, which tells you
+# various things about the netCDF installation. This code was
+# contributed by netCDF user Arlindo DaSilva. Thanks Arlindo!
+
+prefix=/home/erikvs/privatemodules/nc4
+exec_prefix=${prefix}
+libdir=${exec_prefix}/lib
+includedir=${prefix}/include
+
+cc="gcc"
+cflags="-I${includedir} -I/home/erikvs/privatemodules/nc4/include"
+libs="-L${libdir} -lnetcdf"
+
+has_dap="yes"
+has_nc2="yes"
+has_nc4="yes"
+has_hdf4="no"
+has_pnetcdf="no"
+has_hdf5="yes"
+has_logging="no"
+version="netCDF 4.4.1.1"
+
+has_fortran="no"
+has_f90="no"
+has_f03="no"
+
+nfconf=$(which nf-config 2>/dev/null)
+
+if [ -f "$nfconf" ]; then
+ has_fortran="yes"
+ fc=`nf-config --fc`
+ fflags=`nf-config --fflags`
+ flibs=`nf-config --flibs`
+ has_f90=`nf-config --has-f90`
+ has_f03=`nf-config --has-f03`
+fi
+
+has_cxx="no"
+has_cxx4="no"
+if type -p ncxx4-config > /dev/null 2>&1; then
+ cxx4=`ncxx4-config --cxx`
+ cxx4flags=`ncxx4-config --cflags`
+ cxx4libs=`ncxx4-config --libs`
+ has_cxx4="yes"
+elif type -p ncxx-config > /dev/null 2>&1; then
+ cxx=`ncxx-config --cxx`
+ cxxflags=`ncxx-config --cflags`
+ cxxlibs=`ncxx-config --libs`
+ has_cxx="yes"
+fi
+
+usage()
+{
+ cat <<EOF
+Usage: nc-config [OPTION]
+
+Available values for OPTION include:
+
+ --help display this help message and exit
+ --all display all options
+ --cc C compiler
+ --cflags pre-processor and compiler flags
+ --has-c++ whether C++ API is installed
+ --has-c++4 whether netCDF-4 C++ API is installed
+ --has-fortran whether Fortran API is installed
+ --has-dap whether OPeNDAP is enabled in this build
+ --has-nc2 whether NetCDF-2 API is enabled
+ --has-nc4 whether NetCDF-4/HDF-5 is enabled in this build
+ --has-hdf5 whether HDF5 is used in build (always the same as --has-nc4)
+ --has-hdf4 whether HDF4 was used in build
+ --has-logging whether logging is enabled with --enable-logging.
+ --has-pnetcdf whether parallel-netcdf (a.k.a. pnetcdf) was used in build
+ --has-szlib whether szlib is included in build
+ --libs library linking information for netcdf
+ --prefix Install prefix
+ --includedir Include directory
+ --libdir Library directory
+ --version Library version
+
+EOF
+if type -p ncxx4-config > /dev/null 2>&1; then
+ cat <<EOF
+ --cxx4 C++ compiler for netCDF-4 C++ library
+ --cxx4flags flags needed to compile a C++ program
+ --cxx4libs libraries needed to link a C++ program
+EOF
+elif type -p ncxx-config > /dev/null 2>&1; then
+ cat <<EOF
+ --cxx C++ compiler
+ --cxxflags flags needed to compile a C++ program
+ --cxxlibs libraries needed to link a C++ program
+EOF
+fi
+if [ -f "$nfconf" ]; then
+ cat <<EOF
+ --fc Fortran compiler
+ --fflags flags needed to compile a Fortran program
+ --flibs libraries needed to link a Fortran program
+ --has-f90 whether Fortran 90 API is installed
+ --has-f03 whether Fortran 03 API is installed (implies F90).
+EOF
+fi
+ exit $1
+}
+
+all()
+{
+ echo
+ echo "This $version has been built with the following features: "
+ echo
+ echo " --cc -> $cc"
+ echo " --cflags -> $cflags"
+ echo " --libs -> $libs"
+ echo
+ echo " --has-c++ -> $has_cxx"
+ echo " --cxx -> $cxx"
+
+if type -p ncxx-config > /dev/null 2>&1; then
+ echo " --cxxflags -> $cxxflags"
+ echo " --cxxlibs -> $cxxlibs"
+fi
+ echo
+ echo " --has-c++4 -> $has_cxx4"
+ echo " --cxx4 -> $cxx4"
+if type -p ncxx4-config > /dev/null 2>&1; then
+ echo " --cxx4flags -> $cxx4flags"
+ echo " --cxx4libs -> $cxx4libs"
+fi
+ echo
+
+ echo " --has-fortran-> $has_fortran"
+if [ -f "$nfconf" ]; then
+ echo " --fc -> $fc"
+ echo " --fflags -> $fflags"
+ echo " --flibs -> $flibs"
+ echo " --has-f90 -> $has_f90"
+ echo " --has-f03 -> $has_f03"
+ echo
+fi
+ echo " --has-dap -> $has_dap"
+ echo " --has-nc2 -> $has_nc2"
+ echo " --has-nc4 -> $has_nc4"
+ echo " --has-hdf5 -> $has_hdf5"
+ echo " --has-hdf4 -> $has_hdf4"
+ echo " --has-logging-> $has_logging"
+ echo " --has-pnetcdf-> $has_pnetcdf"
+ echo " --has-szlib -> $has_szlib"
+ echo
+ echo " --prefix -> $prefix"
+ echo " --includedir-> $includedir"
+ echo " --libdir -> $libdir"
+ echo " --version -> $version"
+ echo
+}
+
+if test $# -eq 0; then
+ usage 1
+fi
+
+while test $# -gt 0; do
+ case "$1" in
+ # this deals with options in the style
+ # --option=value and extracts the value part
+ # [not currently used]
+ -*=*) value=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
+ *) value= ;;
+ esac
+
+ case "$1" in
+
+ --help)
+ usage 0
+ ;;
+
+ --all)
+ all
+ ;;
+
+ --cc)
+ echo $cc
+ ;;
+
+ --cflags)
+ echo $cflags
+ ;;
+
+ --has-dap)
+ echo $has_dap
+ ;;
+
+ --has-nc2)
+ echo $has_nc2
+ ;;
+
+ --has-nc4)
+ echo $has_nc4
+ ;;
+
+ --has-hdf5)
+ echo $has_hdf5
+ ;;
+
+ --has-hdf4)
+ echo $has_hdf4
+ ;;
+
+ --has-logging)
+ echo $has_logging
+ ;;
+
+ --has-pnetcdf)
+ echo $has_pnetcdf
+ ;;
+
+ --has-szlib)
+ echo $has_szlib
+ ;;
+
+ --libs)
+ echo $libs
+ ;;
+
+ --prefix)
+ echo "${prefix}"
+ ;;
+
+ --includedir)
+ echo "${includedir}"
+ ;;
+
+ --libdir)
+ echo "${libdir}"
+ ;;
+
+ --version)
+ echo $version
+ ;;
+
+ --has-c++)
+ echo $has_cxx
+ ;;
+
+ --cxx)
+ echo $cxx
+ ;;
+
+ --cxxflags)
+ echo $cxxflags
+ ;;
+
+ --cxxlibs)
+ echo $cxxlibs
+ ;;
+
+ --has-c++4)
+ echo $has_cxx4
+ ;;
+
+ --cxx4)
+ echo $cxx4
+ ;;
+
+ --cxx4flags)
+ echo $cxx4flags
+ ;;
+
+ --cxx4libs)
+ echo $cxx4libs
+ ;;
+
+ --has-fortran)
+ echo $has_fortran
+ ;;
+
+ --fc)
+ echo $fc
+ ;;
+
+ --fflags)
+ echo $fflags
+ ;;
+
+ --flibs)
+ echo $flibs
+ ;;
+
+ --has-f90)
+ echo $has_f90
+ ;;
+
+ --has-f03)
+ echo $has_f03
+ ;;
+
+ *)
+ echo "unknown option: $1"
+ usage 1
+ ;;
+ esac
+ shift
+done
+
+exit 0
diff --git a/privatemodules/nc4/bin/nccopy b/privatemodules/nc4/bin/nccopy
new file mode 100755
index 0000000000000000000000000000000000000000..2587bb1ae07cadb2ffd4afff5ecc1363fa1894b9
Binary files /dev/null and b/privatemodules/nc4/bin/nccopy differ
diff --git a/privatemodules/nc4/bin/ncdump b/privatemodules/nc4/bin/ncdump
new file mode 100755
index 0000000000000000000000000000000000000000..b61f2f51688ac0088b566b23672a21f942a64f80
Binary files /dev/null and b/privatemodules/nc4/bin/ncdump differ
diff --git a/privatemodules/nc4/bin/ncgen b/privatemodules/nc4/bin/ncgen
new file mode 100755
index 0000000000000000000000000000000000000000..144d9e1ee76b97acffaa7e0adb268fd9ffa4da32
Binary files /dev/null and b/privatemodules/nc4/bin/ncgen differ
diff --git a/privatemodules/nc4/bin/ncgen3 b/privatemodules/nc4/bin/ncgen3
new file mode 100755
index 0000000000000000000000000000000000000000..c8c1fec6fe74344ce442b777012430a257d7ee53
Binary files /dev/null and b/privatemodules/nc4/bin/ncgen3 differ
diff --git a/privatemodules/nc4/bin/nf-config b/privatemodules/nc4/bin/nf-config
new file mode 100755
index 0000000000000000000000000000000000000000..b0a2c56e8a1064393e4ae5fad066e78f800fcee3
--- /dev/null
+++ b/privatemodules/nc4/bin/nf-config
@@ -0,0 +1,158 @@
+#! /bin/sh
+#
+# This forms the basis for the nf-config utility, which tells you
+# various things about the netCDF fortran installation.
+
+prefix=/home/erikvs/privatemodules/nc4
+exec_prefix=${prefix}
+libdir=${exec_prefix}/lib
+includedir=${prefix}/include
+
+cc="gcc"
+fc="gfortran"
+cflags=" -I${includedir} -I/home/erikvs/privatemodules/nc4/include"
+fflags="-I${includedir}"
+has_dap="yes"
+has_nc2="yes"
+has_nc4="yes"
+has_f90="no"
+has_f03="yes"
+flibs="-L${libdir} -lnetcdff -L/home/erikvs/privatemodules/nc4/lib -lnetcdf -lnetcdf "
+version="netCDF-Fortran 4.4.4"
+
+usage()
+{
+ cat <<EOF
+Usage: nf-config [OPTION]
+
+Available values for OPTION include:
+
+ --help display this help message and exit
+ --all display all options
+ --cc C compiler
+ --fc Fortran compiler
+ --cflags pre-processor and compiler flags
+ --fflags flags needed to compile a Fortran program
+ --has-dap whether OPeNDAP is enabled in this build
+ --has-nc2 whether NetCDF-2 API is enabled
+ --has-nc4 whether NetCDF-4/HDF-5 is enabled in this build
+ --has-f90 whether Fortran 90 API is enabled in this build
+ --has-f03 whether Fortran 2003 API is enabled in this build
+ --flibs libraries needed to link a Fortran program
+ --prefix Install prefix
+ --includedir Include directory
+ --version Library version
+
+EOF
+
+ exit $1
+}
+
+all()
+{
+ echo
+ echo "This $version has been built with the following features: "
+ echo
+ echo " --cc -> $cc"
+ echo " --cflags -> $cflags"
+ echo
+ echo " --fc -> $fc"
+ echo " --fflags -> $fflags"
+ echo " --flibs -> $flibs"
+ echo " --has-f90 -> $has_f90"
+ echo " --has-f03 -> $has_f03"
+ echo
+ echo " --has-nc2 -> $has_nc2"
+ echo " --has-nc4 -> $has_nc4"
+ echo
+ echo " --prefix -> $prefix"
+ echo " --includedir-> $includedir"
+ echo " --version -> $version"
+ echo
+}
+
+if test $# -eq 0; then
+ usage 1
+fi
+
+while test $# -gt 0; do
+ case "$1" in
+ # this deals with options in the style
+ # --option=value and extracts the value part
+ # [not currently used]
+ -*=*) value=`echo "$1" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
+ *) value= ;;
+ esac
+
+ case "$1" in
+
+ --help)
+ usage 0
+ ;;
+
+ --all)
+ all
+ ;;
+
+ --cc)
+ echo $cc
+ ;;
+
+ --fc)
+ echo $fc
+ ;;
+
+ --cflags)
+ echo $cflags
+ ;;
+
+ --fflags)
+ echo $fflags
+ ;;
+
+ --has-dap)
+ echo $has_dap
+ ;;
+
+ --has-nc2)
+ echo $has_nc2
+ ;;
+
+ --has-nc4)
+ echo $has_nc4
+ ;;
+
+ --has-f90)
+ echo $has_f90
+ ;;
+
+ --has-f03)
+ echo $has_f03
+ ;;
+
+ --flibs)
+ echo $flibs
+ ;;
+
+ --prefix)
+ echo "${prefix}"
+ ;;
+
+ --includedir)
+ echo "${includedir}"
+ ;;
+
+ --version)
+ echo $version
+ ;;
+
+ *)
+ echo "unknown option: $1"
+ usage
+ exit 1
+ ;;
+ esac
+ shift
+done
+
+exit 0
diff --git a/privatemodules/nc4/include/H5ACpublic.h b/privatemodules/nc4/include/H5ACpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..639179ce3b2bcc253739764d7f5f1b4b648c9024
--- /dev/null
+++ b/privatemodules/nc4/include/H5ACpublic.h
@@ -0,0 +1,508 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5ACpublic.h
+ * Jul 10 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public include file for cache functions.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5ACpublic_H
+#define _H5ACpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Cpublic.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/****************************************************************************
+ *
+ * structure H5AC_cache_config_t
+ *
+ * H5AC_cache_config_t is a public structure intended for use in public APIs.
+ * At least in its initial incarnation, it is basicaly a copy of struct
+ * H5C_auto_size_ctl_t, minus the report_fcn field, and plus the
+ * dirty_bytes_threshold field.
+ *
+ * The report_fcn field is omitted, as including it would require us to
+ * make H5C_t structure public.
+ *
+ * The dirty_bytes_threshold field does not appear in H5C_auto_size_ctl_t,
+ * as synchronization between caches on different processes is handled at
+ * the H5AC level, not at the level of H5C. Note however that there is
+ * considerable interaction between this value and the other fields in this
+ * structure.
+ *
+ * Similarly, the open_trace_file, close_trace_file, and trace_file_name
+ * fields do not appear in H5C_auto_size_ctl_t, as most trace file
+ * issues are handled at the H5AC level. The one exception is storage of
+ * the pointer to the trace file, which is handled by H5C.
+ *
+ * The structure is in H5ACpublic.h as we may wish to allow different
+ * configuration options for metadata and raw data caches.
+ *
+ * The fields of the structure are discussed individually below:
+ *
+ * version: Integer field containing the version number of this version
+ * of the H5AC_cache_config_t structure. Any instance of
+ * H5AC_cache_config_t passed to the cache must have a known
+ * version number, or an error will be flagged.
+ *
+ * rpt_fcn_enabled: Boolean field used to enable and disable the default
+ * reporting function. This function is invoked every time the
+ * automatic cache resize code is run, and reports on its activities.
+ *
+ * This is a debugging function, and should normally be turned off.
+ *
+ * open_trace_file: Boolean field indicating whether the trace_file_name
+ * field should be used to open a trace file for the cache.
+ *
+ * The trace file is a debuging feature that allow the capture of
+ * top level metadata cache requests for purposes of debugging and/or
+ * optimization. This field should normally be set to FALSE, as
+ * trace file collection imposes considerable overhead.
+ *
+ * This field should only be set to TRUE when the trace_file_name
+ * contains the full path of the desired trace file, and either
+ * there is no open trace file on the cache, or the close_trace_file
+ * field is also TRUE.
+ *
+ * close_trace_file: Boolean field indicating whether the current trace
+ * file (if any) should be closed.
+ *
+ * See the above comments on the open_trace_file field. This field
+ * should be set to FALSE unless there is an open trace file on the
+ * cache that you wish to close.
+ *
+ * trace_file_name: Full path of the trace file to be opened if the
+ * open_trace_file field is TRUE.
+ *
+ * In the parallel case, an ascii representation of the mpi rank of
+ * the process will be appended to the file name to yield a unique
+ * trace file name for each process.
+ *
+ * The length of the path must not exceed H5AC__MAX_TRACE_FILE_NAME_LEN
+ * characters.
+ *
+ * evictions_enabled: Boolean field used to either report the current
+ * evictions enabled status of the cache, or to set the cache's
+ * evictions enabled status.
+ *
+ * In general, the metadata cache should always be allowed to
+ * evict entries. However, in some cases it is advantageous to
+ * disable evictions briefly, and thereby postpone metadata
+ * writes. However, this must be done with care, as the cache
+ * can grow quickly. If you do this, re-enable evictions as
+ * soon as possible and monitor cache size.
+ *
+ * At present, evictions can only be disabled if automatic
+ * cache resizing is also disabled (that is, ( incr_mode ==
+ * H5C_incr__off ) && ( decr_mode == H5C_decr__off )). There
+ * is no logical reason why this should be so, but it simplifies
+ * implementation and testing, and I can't think of any reason
+ * why it would be desireable. If you can think of one, I'll
+ * revisit the issue.
+ *
+ * set_initial_size: Boolean flag indicating whether the size of the
+ * initial size of the cache is to be set to the value given in
+ * the initial_size field. If set_initial_size is FALSE, the
+ * initial_size field is ignored.
+ *
+ * initial_size: If enabled, this field contain the size the cache is
+ * to be set to upon receipt of this structure. Needless to say,
+ * initial_size must lie in the closed interval [min_size, max_size].
+ *
+ * min_clean_fraction: double in the range 0 to 1 indicating the fraction
+ * of the cache that is to be kept clean. This field is only used
+ * in parallel mode. Typical values are 0.1 to 0.5.
+ *
+ * max_size: Maximum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [MIN_MAX_CACHE_SIZE, MAX_MAX_CACHE_SIZE]. Also, max_size must
+ * be greater than or equal to min_size.
+ *
+ * min_size: Minimum size to which the cache can be adjusted. The
+ * supplied value must fall in the closed interval
+ * [H5C__MIN_MAX_CACHE_SIZE, H5C__MAX_MAX_CACHE_SIZE]. Also, min_size
+ * must be less than or equal to max_size.
+ *
+ * epoch_length: Number of accesses on the cache over which to collect
+ * hit rate stats before running the automatic cache resize code,
+ * if it is enabled.
+ *
+ * At the end of an epoch, we discard prior hit rate data and start
+ * collecting afresh. The epoch_length must lie in the closed
+ * interval [H5C__MIN_AR_EPOCH_LENGTH, H5C__MAX_AR_EPOCH_LENGTH].
+ *
+ *
+ * Cache size increase control fields:
+ *
+ * incr_mode: Instance of the H5C_cache_incr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * increased. At present there are two possible values:
+ *
+ * H5C_incr__off: Don't attempt to increase the size of the cache
+ * automatically.
+ *
+ * When this increment mode is selected, the remaining fields
+ * in the cache size increase section ar ignored.
+ *
+ * H5C_incr__threshold: Attempt to increase the size of the cache
+ * whenever the average hit rate over the last epoch drops
+ * below the value supplied in the lower_hr_threshold
+ * field.
+ *
+ * Note that this attempt will fail if the cache is already
+ * at its maximum size, or if the cache is not already using
+ * all available space.
+ *
+ * Note that you must set decr_mode to H5C_incr__off if you
+ * disable metadata cache entry evictions.
+ *
+ * lower_hr_threshold: Lower hit rate threshold. If the increment mode
+ * (incr_mode) is H5C_incr__threshold and the hit rate drops below the
+ * value supplied in this field in an epoch, increment the cache size by
+ * size_increment. Note that cache size may not be incremented above
+ * max_size, and that the increment may be further restricted by the
+ * max_increment field if it is enabled.
+ *
+ * When enabled, this field must contain a value in the range [0.0, 1.0].
+ * Depending on the incr_mode selected, it may also have to be less than
+ * upper_hr_threshold.
+ *
+ * increment: Double containing the multiplier used to derive the new
+ * cache size from the old if a cache size increment is triggered.
+ * The increment must be greater than 1.0, and should not exceed 2.0.
+ *
+ * The new cache size is obtained my multiplying the current max cache
+ * size by the increment, and then clamping to max_size and to stay
+ * within the max_increment as necessary.
+ *
+ * apply_max_increment: Boolean flag indicating whether the max_increment
+ * field should be used to limit the maximum cache size increment.
+ *
+ * max_increment: If enabled by the apply_max_increment field described
+ * above, this field contains the maximum number of bytes by which the
+ * cache size can be increased in a single re-size.
+ *
+ * flash_incr_mode: Instance of the H5C_cache_flash_incr_mode enumerated
+ * type whose value indicates whether and by which algorithm we should
+ * make flash increases in the size of the cache to accomodate insertion
+ * of large entries and large increases in the size of a single entry.
+ *
+ * The addition of the flash increment mode was occasioned by performance
+ * problems that appear when a local heap is increased to a size in excess
+ * of the current cache size. While the existing re-size code dealt with
+ * this eventually, performance was very bad for the remainder of the
+ * epoch.
+ *
+ * At present, there are two possible values for the flash_incr_mode:
+ *
+ * H5C_flash_incr__off: Don't perform flash increases in the size of
+ * the cache.
+ *
+ * H5C_flash_incr__add_space: Let x be either the size of a newly
+ * newly inserted entry, or the number of bytes by which the
+ * size of an existing entry has been increased.
+ *
+ * If
+ * x > flash_threshold * current max cache size,
+ *
+ * increase the current maximum cache size by x * flash_multiple
+ * less any free space in the cache, and star a new epoch. For
+ * now at least, pay no attention to the maximum increment.
+ *
+ * In both of the above cases, the flash increment pays no attention to
+ * the maximum increment (at least in this first incarnation), but DOES
+ * stay within max_size.
+ *
+ * With a little thought, it should be obvious that the above flash
+ * cache size increase algorithm is not sufficient for all circumstances
+ * -- for example, suppose the user round robins through
+ * (1/flash_threshold) +1 groups, adding one data set to each on each
+ * pass. Then all will increase in size at about the same time, requiring
+ * the max cache size to at least double to maintain acceptable
+ * performance, however the above flash increment algorithm will not be
+ * triggered.
+ *
+ * Hopefully, the add space algorithms detailed above will be sufficient
+ * for the performance problems encountered to date. However, we should
+ * expect to revisit the issue.
+ *
+ * flash_multiple: Double containing the multiple described above in the
+ * H5C_flash_incr__add_space section of the discussion of the
+ * flash_incr_mode section. This field is ignored unless flash_incr_mode
+ * is H5C_flash_incr__add_space.
+ *
+ * flash_threshold: Double containing the factor by which current max cache
+ * size is multiplied to obtain the size threshold for the add_space flash
+ * increment algorithm. The field is ignored unless flash_incr_mode is
+ * H5C_flash_incr__add_space.
+ *
+ *
+ * Cache size decrease control fields:
+ *
+ * decr_mode: Instance of the H5C_cache_decr_mode enumerated type whose
+ * value indicates how we determine whether the cache size should be
+ * decreased. At present there are four possibilities.
+ *
+ * H5C_decr__off: Don't attempt to decrease the size of the cache
+ * automatically.
+ *
+ * When this increment mode is selected, the remaining fields
+ * in the cache size decrease section are ignored.
+ *
+ * H5C_decr__threshold: Attempt to decrease the size of the cache
+ * whenever the average hit rate over the last epoch rises
+ * above the value supplied in the upper_hr_threshold
+ * field.
+ *
+ * H5C_decr__age_out: At the end of each epoch, search the cache for
+ * entries that have not been accessed for at least the number
+ * of epochs specified in the epochs_before_eviction field, and
+ * evict these entries. Conceptually, the maximum cache size
+ * is then decreased to match the new actual cache size. However,
+ * this reduction may be modified by the min_size, the
+ * max_decrement, and/or the empty_reserve.
+ *
+ * H5C_decr__age_out_with_threshold: Same as age_out, but we only
+ * attempt to reduce the cache size when the hit rate observed
+ * over the last epoch exceeds the value provided in the
+ * upper_hr_threshold field.
+ *
+ * Note that you must set decr_mode to H5C_decr__off if you
+ * disable metadata cache entry evictions.
+ *
+ * upper_hr_threshold: Upper hit rate threshold. The use of this field
+ * varies according to the current decr_mode:
+ *
+ * H5C_decr__off or H5C_decr__age_out: The value of this field is
+ * ignored.
+ *
+ * H5C_decr__threshold: If the hit rate exceeds this threshold in any
+ * epoch, attempt to decrement the cache size by size_decrement.
+ *
+ * Note that cache size may not be decremented below min_size.
+ *
+ * Note also that if the upper_threshold is 1.0, the cache size
+ * will never be reduced.
+ *
+ * H5C_decr__age_out_with_threshold: If the hit rate exceeds this
+ * threshold in any epoch, attempt to reduce the cache size
+ * by evicting entries that have not been accessed for more
+ * than the specified number of epochs.
+ *
+ * decrement: This field is only used when the decr_mode is
+ * H5C_decr__threshold.
+ *
+ * The field is a double containing the multiplier used to derive the
+ * new cache size from the old if a cache size decrement is triggered.
+ * The decrement must be in the range 0.0 (in which case the cache will
+ * try to contract to its minimum size) to 1.0 (in which case the
+ * cache will never shrink).
+ *
+ * apply_max_decrement: Boolean flag used to determine whether decrements
+ * in cache size are to be limited by the max_decrement field.
+ *
+ * max_decrement: Maximum number of bytes by which the cache size can be
+ * decreased in a single re-size. Note that decrements may also be
+ * restricted by the min_size of the cache, and (in age out modes) by
+ * the empty_reserve field.
+ *
+ * epochs_before_eviction: Integer field used in H5C_decr__age_out and
+ * H5C_decr__age_out_with_threshold decrement modes.
+ *
+ * This field contains the number of epochs an entry must remain
+ * unaccessed before it is evicted in an attempt to reduce the
+ * cache size. If applicable, this field must lie in the range
+ * [1, H5C__MAX_EPOCH_MARKERS].
+ *
+ * apply_empty_reserve: Boolean field controlling whether the empty_reserve
+ * field is to be used in computing the new cache size when the
+ * decr_mode is H5C_decr__age_out or H5C_decr__age_out_with_threshold.
+ *
+ * empty_reserve: To avoid a constant racheting down of cache size by small
+ * amounts in the H5C_decr__age_out and H5C_decr__age_out_with_threshold
+ * modes, this field allows one to require that any cache size
+ * reductions leave the specified fraction of unused space in the cache.
+ *
+ * The value of this field must be in the range [0.0, 1.0]. I would
+ * expect typical values to be in the range of 0.01 to 0.1.
+ *
+ *
+ * Parallel Configuration Fields:
+ *
+ * In PHDF5, all operations that modify metadata must be executed collectively.
+ *
+ * We used to think that this was enough to ensure consistency across the
+ * metadata caches, but since we allow processes to read metadata individually,
+ * the order of dirty entries in the LRU list can vary across processes,
+ * which can result in inconsistencies between the caches.
+ *
+ * PHDF5 uses several strategies to prevent such inconsistencies in metadata,
+ * all of which use the fact that the same stream of dirty metadata is seen
+ * by all processes for purposes of synchronization. This is done by
+ * having each process count the number of bytes of dirty metadata generated,
+ * and then running a "sync point" whenever this count exceeds a user
+ * specified threshold (see dirty_bytes_threshold below).
+ *
+ * The current metadata write strategy is indicated by the
+ * metadata_write_strategy field. The possible values of this field, along
+ * with the associated metadata write strategies are discussed below.
+ *
+ * dirty_bytes_threshold: Threshold of dirty byte creation used to
+ * synchronize updates between caches. (See above for outline and
+ * motivation.)
+ *
+ * This value MUST be consistant across all processes accessing the
+ * file. This field is ignored unless HDF5 has been compiled for
+ * parallel.
+ *
+ * metadata_write_strategy: Integer field containing a code indicating the
+ * desired metadata write strategy. The valid values of this field
+ * are enumerated and discussed below:
+ *
+ *
+ * H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY:
+ *
+ * When metadata_write_strategy is set to this value, only process
+ * zero is allowed to write dirty metadata to disk. All other
+ * processes must retain dirty metadata until they are informed at
+ * a sync point that the dirty metadata in question has been written
+ * to disk.
+ *
+ * When the sync point is reached (or when there is a user generated
+ * flush), process zero flushes sufficient entries to bring it into
+ * complience with its min clean size (or flushes all dirty entries in
+ * the case of a user generated flush), broad casts the list of
+ * entries just cleaned to all the other processes, and then exits
+ * the sync point.
+ *
+ * Upon receipt of the broadcast, the other processes mark the indicated
+ * entries as clean, and leave the sync point as well.
+ *
+ *
+ * H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED:
+ *
+ * In the distributed metadata write strategy, process zero still makes
+ * the decisions as to what entries should be flushed, but the actual
+ * flushes are distributed across the processes in the computation to
+ * the extent possible.
+ *
+ * In this strategy, when a sync point is triggered (either by dirty
+ * metadata creation or manual flush), all processes enter a barrier.
+ *
+ * On the other side of the barrier, process 0 constructs an ordered
+ * list of the entries to be flushed, and then broadcasts this list
+ * to the caches in all the processes.
+ *
+ * All processes then scan the list of entries to be flushed, flushing
+ * some, and marking the rest as clean. The algorithm for this purpose
+ * ensures that each entry in the list is flushed exactly once, and
+ * all are marked clean in each cache.
+ *
+ * Note that in the case of a flush of the cache, no message passing
+ * is necessary, as all processes have the same list of dirty entries,
+ * and all of these entries must be flushed. Thus in this case it is
+ * sufficient for each process to sort its list of dirty entries after
+ * leaving the initial barrier, and use this list as if it had been
+ * received from process zero.
+ *
+ * To avoid possible messages from the past/future, all caches must
+ * wait until all caches are done before leaving the sync point.
+ *
+ ****************************************************************************/
+
+#define H5AC__CURR_CACHE_CONFIG_VERSION 1
+#define H5AC__MAX_TRACE_FILE_NAME_LEN 1024
+
+#define H5AC_METADATA_WRITE_STRATEGY__PROCESS_0_ONLY 0
+#define H5AC_METADATA_WRITE_STRATEGY__DISTRIBUTED 1
+
+typedef struct H5AC_cache_config_t
+{
+ /* general configuration fields: */
+ int version;
+
+ hbool_t rpt_fcn_enabled;
+
+ hbool_t open_trace_file;
+ hbool_t close_trace_file;
+ char trace_file_name[H5AC__MAX_TRACE_FILE_NAME_LEN + 1];
+
+ hbool_t evictions_enabled;
+
+ hbool_t set_initial_size;
+ size_t initial_size;
+
+ double min_clean_fraction;
+
+ size_t max_size;
+ size_t min_size;
+
+ long int epoch_length;
+
+
+ /* size increase control fields: */
+ enum H5C_cache_incr_mode incr_mode;
+
+ double lower_hr_threshold;
+
+ double increment;
+
+ hbool_t apply_max_increment;
+ size_t max_increment;
+
+ enum H5C_cache_flash_incr_mode flash_incr_mode;
+ double flash_multiple;
+ double flash_threshold;
+
+
+ /* size decrease control fields: */
+ enum H5C_cache_decr_mode decr_mode;
+
+ double upper_hr_threshold;
+
+ double decrement;
+
+ hbool_t apply_max_decrement;
+ size_t max_decrement;
+
+ int epochs_before_eviction;
+
+ hbool_t apply_empty_reserve;
+ double empty_reserve;
+
+
+ /* parallel configuration fields: */
+ int dirty_bytes_threshold;
+ int metadata_write_strategy;
+
+} H5AC_cache_config_t;
+
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/privatemodules/nc4/include/H5Apublic.h b/privatemodules/nc4/include/H5Apublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..99ca90e114a779e464ad138f57e5b045baf30a13
--- /dev/null
+++ b/privatemodules/nc4/include/H5Apublic.h
@@ -0,0 +1,120 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5A module.
+ */
+#ifndef _H5Apublic_H
+#define _H5Apublic_H
+
+/* Public headers needed by this file */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Opublic.h" /* Object Headers */
+#include "H5Tpublic.h" /* Datatypes */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Information struct for attribute (for H5Aget_info/H5Aget_info_by_idx) */
+typedef struct {
+ hbool_t corder_valid; /* Indicate if creation order is valid */
+ H5O_msg_crt_idx_t corder; /* Creation order */
+ H5T_cset_t cset; /* Character set of attribute name */
+ hsize_t data_size; /* Size of raw data */
+} H5A_info_t;
+
+/* Typedef for H5Aiterate2() callbacks */
+typedef herr_t (*H5A_operator2_t)(hid_t location_id/*in*/,
+ const char *attr_name/*in*/, const H5A_info_t *ainfo/*in*/, void *op_data/*in,out*/);
+
+/* Public function prototypes */
+H5_DLL hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id,
+ hid_t space_id, hid_t acpl_id, hid_t aapl_id);
+H5_DLL hid_t H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name,
+ hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id);
+H5_DLL hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id);
+H5_DLL hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, hid_t aapl_id, hid_t lapl_id);
+H5_DLL hid_t H5Aopen_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id,
+ hid_t lapl_id);
+H5_DLL herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf);
+H5_DLL herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf);
+H5_DLL herr_t H5Aclose(hid_t attr_id);
+H5_DLL hid_t H5Aget_space(hid_t attr_id);
+H5_DLL hid_t H5Aget_type(hid_t attr_id);
+H5_DLL hid_t H5Aget_create_plist(hid_t attr_id);
+H5_DLL ssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf);
+H5_DLL ssize_t H5Aget_name_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ char *name /*out*/, size_t size, hid_t lapl_id);
+H5_DLL hsize_t H5Aget_storage_size(hid_t attr_id);
+H5_DLL herr_t H5Aget_info(hid_t attr_id, H5A_info_t *ainfo /*out*/);
+H5_DLL herr_t H5Aget_info_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, H5A_info_t *ainfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Aget_info_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ H5A_info_t *ainfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Arename(hid_t loc_id, const char *old_name, const char *new_name);
+H5_DLL herr_t H5Arename_by_name(hid_t loc_id, const char *obj_name,
+ const char *old_attr_name, const char *new_attr_name, hid_t lapl_id);
+H5_DLL herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data);
+H5_DLL herr_t H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data,
+ hid_t lapd_id);
+H5_DLL herr_t H5Adelete(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Adelete_by_name(hid_t loc_id, const char *obj_name,
+ const char *attr_name, hid_t lapl_id);
+H5_DLL herr_t H5Adelete_by_idx(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL htri_t H5Aexists(hid_t obj_id, const char *attr_name);
+H5_DLL htri_t H5Aexists_by_name(hid_t obj_id, const char *obj_name,
+ const char *attr_name, hid_t lapl_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+/* Typedef for H5Aiterate1() callbacks */
+typedef herr_t (*H5A_operator1_t)(hid_t location_id/*in*/,
+ const char *attr_name/*in*/, void *operator_data/*in,out*/);
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t acpl_id);
+H5_DLL hid_t H5Aopen_name(hid_t loc_id, const char *name);
+H5_DLL hid_t H5Aopen_idx(hid_t loc_id, unsigned idx);
+H5_DLL int H5Aget_num_attrs(hid_t loc_id);
+H5_DLL herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op,
+ void *op_data);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5Apublic_H */
+
diff --git a/privatemodules/nc4/include/H5Cpublic.h b/privatemodules/nc4/include/H5Cpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..39ebbe3760a183d8fdbb3f9d260fe8af851cf64a
--- /dev/null
+++ b/privatemodules/nc4/include/H5Cpublic.h
@@ -0,0 +1,61 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Cpublic.h
+ * June 4, 2005
+ * John Mainzer
+ *
+ * Purpose: Public include file for cache functions.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Cpublic_H
+#define _H5Cpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+enum H5C_cache_incr_mode
+{
+ H5C_incr__off,
+ H5C_incr__threshold
+};
+
+enum H5C_cache_flash_incr_mode
+{
+ H5C_flash_incr__off,
+ H5C_flash_incr__add_space
+};
+
+enum H5C_cache_decr_mode
+{
+ H5C_decr__off,
+ H5C_decr__threshold,
+ H5C_decr__age_out,
+ H5C_decr__age_out_with_threshold
+};
+
+#ifdef __cplusplus
+}
+#endif
+#endif
diff --git a/privatemodules/nc4/include/H5DOpublic.h b/privatemodules/nc4/include/H5DOpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..774709eb87ab1bcbc001f92d5f61a5d797d9b781
--- /dev/null
+++ b/privatemodules/nc4/include/H5DOpublic.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5DOpublic_H
+#define _H5DOpublic_H
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Direct chunk write function
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5DOwrite_chunk(hid_t dset_id,
+ hid_t dxpl_id,
+ uint32_t filters,
+ const hsize_t *offset,
+ size_t data_size,
+ const void *buf);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5DSpublic.h b/privatemodules/nc4/include/H5DSpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..85923f8cc2b17a06bafdbc1534a08c96c56c2493
--- /dev/null
+++ b/privatemodules/nc4/include/H5DSpublic.h
@@ -0,0 +1,79 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5DSpublic_H
+#define _H5DSpublic_H
+
+
+
+#define DIMENSION_SCALE_CLASS "DIMENSION_SCALE"
+#define DIMENSION_LIST "DIMENSION_LIST"
+#define REFERENCE_LIST "REFERENCE_LIST"
+#define DIMENSION_LABELS "DIMENSION_LABELS"
+
+
+typedef herr_t (*H5DS_iterate_t)(hid_t dset, unsigned dim, hid_t scale, void *visitor_data);
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_HLDLL herr_t H5DSattach_scale( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+H5_HLDLL herr_t H5DSdetach_scale( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+H5_HLDLL herr_t H5DSset_scale( hid_t dsid,
+ const char *dimname);
+
+H5_HLDLL int H5DSget_num_scales( hid_t did,
+ unsigned int dim);
+
+H5_HLDLL herr_t H5DSset_label( hid_t did,
+ unsigned int idx,
+ const char *label);
+
+H5_HLDLL ssize_t H5DSget_label( hid_t did,
+ unsigned int idx,
+ char *label,
+ size_t size);
+
+H5_HLDLL ssize_t H5DSget_scale_name( hid_t did,
+ char *name,
+ size_t size);
+
+H5_HLDLL htri_t H5DSis_scale( hid_t did);
+
+H5_HLDLL herr_t H5DSiterate_scales( hid_t did,
+ unsigned int dim,
+ int *idx,
+ H5DS_iterate_t visitor,
+ void *visitor_data);
+
+H5_HLDLL htri_t H5DSis_attached( hid_t did,
+ hid_t dsid,
+ unsigned int idx);
+
+
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5Dpublic.h b/privatemodules/nc4/include/H5Dpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..4309d6409c38800eeb64b92f39eb969d6ee61e6e
--- /dev/null
+++ b/privatemodules/nc4/include/H5Dpublic.h
@@ -0,0 +1,173 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5D module.
+ */
+#ifndef _H5Dpublic_H
+#define _H5Dpublic_H
+
+/* System headers needed by this file */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Macros used to "unset" chunk cache configuration parameters */
+#define H5D_CHUNK_CACHE_NSLOTS_DEFAULT ((size_t) -1)
+#define H5D_CHUNK_CACHE_NBYTES_DEFAULT ((size_t) -1)
+#define H5D_CHUNK_CACHE_W0_DEFAULT -1.
+
+/* Property names for H5LTDdirect_chunk_write */
+#define H5D_XFER_DIRECT_CHUNK_WRITE_FLAG_NAME "direct_chunk_flag"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_FILTERS_NAME "direct_chunk_filters"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_OFFSET_NAME "direct_chunk_offset"
+#define H5D_XFER_DIRECT_CHUNK_WRITE_DATASIZE_NAME "direct_chunk_datasize"
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Values for the H5D_LAYOUT property */
+typedef enum H5D_layout_t {
+ H5D_LAYOUT_ERROR = -1,
+
+ H5D_COMPACT = 0, /*raw data is very small */
+ H5D_CONTIGUOUS = 1, /*the default */
+ H5D_CHUNKED = 2, /*slow and fancy */
+ H5D_NLAYOUTS = 3 /*this one must be last! */
+} H5D_layout_t;
+
+/* Types of chunk index data structures */
+typedef enum H5D_chunk_index_t {
+ H5D_CHUNK_BTREE = 0 /* v1 B-tree index */
+} H5D_chunk_index_t;
+
+/* Values for the space allocation time property */
+typedef enum H5D_alloc_time_t {
+ H5D_ALLOC_TIME_ERROR = -1,
+ H5D_ALLOC_TIME_DEFAULT = 0,
+ H5D_ALLOC_TIME_EARLY = 1,
+ H5D_ALLOC_TIME_LATE = 2,
+ H5D_ALLOC_TIME_INCR = 3
+} H5D_alloc_time_t;
+
+/* Values for the status of space allocation */
+typedef enum H5D_space_status_t {
+ H5D_SPACE_STATUS_ERROR = -1,
+ H5D_SPACE_STATUS_NOT_ALLOCATED = 0,
+ H5D_SPACE_STATUS_PART_ALLOCATED = 1,
+ H5D_SPACE_STATUS_ALLOCATED = 2
+} H5D_space_status_t;
+
+/* Values for time of writing fill value property */
+typedef enum H5D_fill_time_t {
+ H5D_FILL_TIME_ERROR = -1,
+ H5D_FILL_TIME_ALLOC = 0,
+ H5D_FILL_TIME_NEVER = 1,
+ H5D_FILL_TIME_IFSET = 2
+} H5D_fill_time_t;
+
+/* Values for fill value status */
+typedef enum H5D_fill_value_t {
+ H5D_FILL_VALUE_ERROR =-1,
+ H5D_FILL_VALUE_UNDEFINED =0,
+ H5D_FILL_VALUE_DEFAULT =1,
+ H5D_FILL_VALUE_USER_DEFINED =2
+} H5D_fill_value_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Define the operator function pointer for H5Diterate() */
+typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id, unsigned ndim,
+ const hsize_t *point, void *operator_data);
+
+/* Define the operator function pointer for H5Dscatter() */
+typedef herr_t (*H5D_scatter_func_t)(const void **src_buf/*out*/,
+ size_t *src_buf_bytes_used/*out*/,
+ void *op_data);
+
+/* Define the operator function pointer for H5Dgather() */
+typedef herr_t (*H5D_gather_func_t)(const void *dst_buf,
+ size_t dst_buf_bytes_used, void *op_data);
+
+H5_DLL hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id);
+H5_DLL hid_t H5Dcreate_anon(hid_t file_id, hid_t type_id, hid_t space_id,
+ hid_t plist_id, hid_t dapl_id);
+H5_DLL hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id);
+H5_DLL herr_t H5Dclose(hid_t dset_id);
+H5_DLL hid_t H5Dget_space(hid_t dset_id);
+H5_DLL herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation);
+H5_DLL hid_t H5Dget_type(hid_t dset_id);
+H5_DLL hid_t H5Dget_create_plist(hid_t dset_id);
+H5_DLL hid_t H5Dget_access_plist(hid_t dset_id);
+H5_DLL hsize_t H5Dget_storage_size(hid_t dset_id);
+H5_DLL haddr_t H5Dget_offset(hid_t dset_id);
+H5_DLL herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t plist_id, void *buf/*out*/);
+H5_DLL herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
+ hid_t file_space_id, hid_t plist_id, const void *buf);
+H5_DLL herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id,
+ H5D_operator_t op, void *operator_data);
+H5_DLL herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf);
+H5_DLL herr_t H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size);
+H5_DLL herr_t H5Dfill(const void *fill, hid_t fill_type, void *buf,
+ hid_t buf_type, hid_t space);
+H5_DLL herr_t H5Dset_extent(hid_t dset_id, const hsize_t size[]);
+H5_DLL herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id,
+ hid_t dst_space_id, void *dst_buf);
+H5_DLL herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id,
+ size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data);
+H5_DLL herr_t H5Ddebug(hid_t dset_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Dcreate1(hid_t file_id, const char *name, hid_t type_id,
+ hid_t space_id, hid_t dcpl_id);
+H5_DLL hid_t H5Dopen1(hid_t file_id, const char *name);
+H5_DLL herr_t H5Dextend(hid_t dset_id, const hsize_t size[]);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Dpublic_H */
+
diff --git a/privatemodules/nc4/include/H5Epubgen.h b/privatemodules/nc4/include/H5Epubgen.h
new file mode 100644
index 0000000000000000000000000000000000000000..75eca0b99f0149acc9ca5369426cd6c324f1decf
--- /dev/null
+++ b/privatemodules/nc4/include/H5Epubgen.h
@@ -0,0 +1,368 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_err -- do not edit */
+/* Add new errors to H5err.txt file */
+
+
+#ifndef _H5Epubgen_H
+#define _H5Epubgen_H
+
+/*********************/
+/* Major error codes */
+/*********************/
+
+#define H5E_DATASET (H5OPEN H5E_DATASET_g)
+#define H5E_FUNC (H5OPEN H5E_FUNC_g)
+#define H5E_STORAGE (H5OPEN H5E_STORAGE_g)
+#define H5E_FILE (H5OPEN H5E_FILE_g)
+#define H5E_SOHM (H5OPEN H5E_SOHM_g)
+#define H5E_SYM (H5OPEN H5E_SYM_g)
+#define H5E_PLUGIN (H5OPEN H5E_PLUGIN_g)
+#define H5E_VFL (H5OPEN H5E_VFL_g)
+#define H5E_INTERNAL (H5OPEN H5E_INTERNAL_g)
+#define H5E_BTREE (H5OPEN H5E_BTREE_g)
+#define H5E_REFERENCE (H5OPEN H5E_REFERENCE_g)
+#define H5E_DATASPACE (H5OPEN H5E_DATASPACE_g)
+#define H5E_RESOURCE (H5OPEN H5E_RESOURCE_g)
+#define H5E_PLIST (H5OPEN H5E_PLIST_g)
+#define H5E_LINK (H5OPEN H5E_LINK_g)
+#define H5E_DATATYPE (H5OPEN H5E_DATATYPE_g)
+#define H5E_RS (H5OPEN H5E_RS_g)
+#define H5E_HEAP (H5OPEN H5E_HEAP_g)
+#define H5E_OHDR (H5OPEN H5E_OHDR_g)
+#define H5E_ATOM (H5OPEN H5E_ATOM_g)
+#define H5E_ATTR (H5OPEN H5E_ATTR_g)
+#define H5E_NONE_MAJOR (H5OPEN H5E_NONE_MAJOR_g)
+#define H5E_IO (H5OPEN H5E_IO_g)
+#define H5E_SLIST (H5OPEN H5E_SLIST_g)
+#define H5E_EFL (H5OPEN H5E_EFL_g)
+#define H5E_TST (H5OPEN H5E_TST_g)
+#define H5E_ARGS (H5OPEN H5E_ARGS_g)
+#define H5E_ERROR (H5OPEN H5E_ERROR_g)
+#define H5E_PLINE (H5OPEN H5E_PLINE_g)
+#define H5E_FSPACE (H5OPEN H5E_FSPACE_g)
+#define H5E_CACHE (H5OPEN H5E_CACHE_g)
+H5_DLLVAR hid_t H5E_DATASET_g; /* Dataset */
+H5_DLLVAR hid_t H5E_FUNC_g; /* Function entry/exit */
+H5_DLLVAR hid_t H5E_STORAGE_g; /* Data storage */
+H5_DLLVAR hid_t H5E_FILE_g; /* File accessibilty */
+H5_DLLVAR hid_t H5E_SOHM_g; /* Shared Object Header Messages */
+H5_DLLVAR hid_t H5E_SYM_g; /* Symbol table */
+H5_DLLVAR hid_t H5E_PLUGIN_g; /* Plugin for dynamically loaded library */
+H5_DLLVAR hid_t H5E_VFL_g; /* Virtual File Layer */
+H5_DLLVAR hid_t H5E_INTERNAL_g; /* Internal error (too specific to document in detail) */
+H5_DLLVAR hid_t H5E_BTREE_g; /* B-Tree node */
+H5_DLLVAR hid_t H5E_REFERENCE_g; /* References */
+H5_DLLVAR hid_t H5E_DATASPACE_g; /* Dataspace */
+H5_DLLVAR hid_t H5E_RESOURCE_g; /* Resource unavailable */
+H5_DLLVAR hid_t H5E_PLIST_g; /* Property lists */
+H5_DLLVAR hid_t H5E_LINK_g; /* Links */
+H5_DLLVAR hid_t H5E_DATATYPE_g; /* Datatype */
+H5_DLLVAR hid_t H5E_RS_g; /* Reference Counted Strings */
+H5_DLLVAR hid_t H5E_HEAP_g; /* Heap */
+H5_DLLVAR hid_t H5E_OHDR_g; /* Object header */
+H5_DLLVAR hid_t H5E_ATOM_g; /* Object atom */
+H5_DLLVAR hid_t H5E_ATTR_g; /* Attribute */
+H5_DLLVAR hid_t H5E_NONE_MAJOR_g; /* No error */
+H5_DLLVAR hid_t H5E_IO_g; /* Low-level I/O */
+H5_DLLVAR hid_t H5E_SLIST_g; /* Skip Lists */
+H5_DLLVAR hid_t H5E_EFL_g; /* External file list */
+H5_DLLVAR hid_t H5E_TST_g; /* Ternary Search Trees */
+H5_DLLVAR hid_t H5E_ARGS_g; /* Invalid arguments to routine */
+H5_DLLVAR hid_t H5E_ERROR_g; /* Error API */
+H5_DLLVAR hid_t H5E_PLINE_g; /* Data filters */
+H5_DLLVAR hid_t H5E_FSPACE_g; /* Free Space Manager */
+H5_DLLVAR hid_t H5E_CACHE_g; /* Object cache */
+
+/*********************/
+/* Minor error codes */
+/*********************/
+
+/* Generic low-level file I/O errors */
+#define H5E_SEEKERROR (H5OPEN H5E_SEEKERROR_g)
+#define H5E_READERROR (H5OPEN H5E_READERROR_g)
+#define H5E_WRITEERROR (H5OPEN H5E_WRITEERROR_g)
+#define H5E_CLOSEERROR (H5OPEN H5E_CLOSEERROR_g)
+#define H5E_OVERFLOW (H5OPEN H5E_OVERFLOW_g)
+#define H5E_FCNTL (H5OPEN H5E_FCNTL_g)
+H5_DLLVAR hid_t H5E_SEEKERROR_g; /* Seek failed */
+H5_DLLVAR hid_t H5E_READERROR_g; /* Read failed */
+H5_DLLVAR hid_t H5E_WRITEERROR_g; /* Write failed */
+H5_DLLVAR hid_t H5E_CLOSEERROR_g; /* Close failed */
+H5_DLLVAR hid_t H5E_OVERFLOW_g; /* Address overflowed */
+H5_DLLVAR hid_t H5E_FCNTL_g; /* File control (fcntl) failed */
+
+/* Resource errors */
+#define H5E_NOSPACE (H5OPEN H5E_NOSPACE_g)
+#define H5E_CANTALLOC (H5OPEN H5E_CANTALLOC_g)
+#define H5E_CANTCOPY (H5OPEN H5E_CANTCOPY_g)
+#define H5E_CANTFREE (H5OPEN H5E_CANTFREE_g)
+#define H5E_ALREADYEXISTS (H5OPEN H5E_ALREADYEXISTS_g)
+#define H5E_CANTLOCK (H5OPEN H5E_CANTLOCK_g)
+#define H5E_CANTUNLOCK (H5OPEN H5E_CANTUNLOCK_g)
+#define H5E_CANTGC (H5OPEN H5E_CANTGC_g)
+#define H5E_CANTGETSIZE (H5OPEN H5E_CANTGETSIZE_g)
+#define H5E_OBJOPEN (H5OPEN H5E_OBJOPEN_g)
+H5_DLLVAR hid_t H5E_NOSPACE_g; /* No space available for allocation */
+H5_DLLVAR hid_t H5E_CANTALLOC_g; /* Can't allocate space */
+H5_DLLVAR hid_t H5E_CANTCOPY_g; /* Unable to copy object */
+H5_DLLVAR hid_t H5E_CANTFREE_g; /* Unable to free object */
+H5_DLLVAR hid_t H5E_ALREADYEXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTLOCK_g; /* Unable to lock object */
+H5_DLLVAR hid_t H5E_CANTUNLOCK_g; /* Unable to unlock object */
+H5_DLLVAR hid_t H5E_CANTGC_g; /* Unable to garbage collect */
+H5_DLLVAR hid_t H5E_CANTGETSIZE_g; /* Unable to compute size */
+H5_DLLVAR hid_t H5E_OBJOPEN_g; /* Object is already open */
+
+/* Heap errors */
+#define H5E_CANTRESTORE (H5OPEN H5E_CANTRESTORE_g)
+#define H5E_CANTCOMPUTE (H5OPEN H5E_CANTCOMPUTE_g)
+#define H5E_CANTEXTEND (H5OPEN H5E_CANTEXTEND_g)
+#define H5E_CANTATTACH (H5OPEN H5E_CANTATTACH_g)
+#define H5E_CANTUPDATE (H5OPEN H5E_CANTUPDATE_g)
+#define H5E_CANTOPERATE (H5OPEN H5E_CANTOPERATE_g)
+H5_DLLVAR hid_t H5E_CANTRESTORE_g; /* Can't restore condition */
+H5_DLLVAR hid_t H5E_CANTCOMPUTE_g; /* Can't compute value */
+H5_DLLVAR hid_t H5E_CANTEXTEND_g; /* Can't extend heap's space */
+H5_DLLVAR hid_t H5E_CANTATTACH_g; /* Can't attach object */
+H5_DLLVAR hid_t H5E_CANTUPDATE_g; /* Can't update object */
+H5_DLLVAR hid_t H5E_CANTOPERATE_g; /* Can't operate on object */
+
+/* Function entry/exit interface errors */
+#define H5E_CANTINIT (H5OPEN H5E_CANTINIT_g)
+#define H5E_ALREADYINIT (H5OPEN H5E_ALREADYINIT_g)
+#define H5E_CANTRELEASE (H5OPEN H5E_CANTRELEASE_g)
+H5_DLLVAR hid_t H5E_CANTINIT_g; /* Unable to initialize object */
+H5_DLLVAR hid_t H5E_ALREADYINIT_g; /* Object already initialized */
+H5_DLLVAR hid_t H5E_CANTRELEASE_g; /* Unable to release object */
+
+/* Property list errors */
+#define H5E_CANTGET (H5OPEN H5E_CANTGET_g)
+#define H5E_CANTSET (H5OPEN H5E_CANTSET_g)
+#define H5E_DUPCLASS (H5OPEN H5E_DUPCLASS_g)
+#define H5E_SETDISALLOWED (H5OPEN H5E_SETDISALLOWED_g)
+H5_DLLVAR hid_t H5E_CANTGET_g; /* Can't get value */
+H5_DLLVAR hid_t H5E_CANTSET_g; /* Can't set value */
+H5_DLLVAR hid_t H5E_DUPCLASS_g; /* Duplicate class name in parent class */
+H5_DLLVAR hid_t H5E_SETDISALLOWED_g; /* Disallowed operation */
+
+/* Free space errors */
+#define H5E_CANTMERGE (H5OPEN H5E_CANTMERGE_g)
+#define H5E_CANTREVIVE (H5OPEN H5E_CANTREVIVE_g)
+#define H5E_CANTSHRINK (H5OPEN H5E_CANTSHRINK_g)
+H5_DLLVAR hid_t H5E_CANTMERGE_g; /* Can't merge objects */
+H5_DLLVAR hid_t H5E_CANTREVIVE_g; /* Can't revive object */
+H5_DLLVAR hid_t H5E_CANTSHRINK_g; /* Can't shrink container */
+
+/* Object header related errors */
+#define H5E_LINKCOUNT (H5OPEN H5E_LINKCOUNT_g)
+#define H5E_VERSION (H5OPEN H5E_VERSION_g)
+#define H5E_ALIGNMENT (H5OPEN H5E_ALIGNMENT_g)
+#define H5E_BADMESG (H5OPEN H5E_BADMESG_g)
+#define H5E_CANTDELETE (H5OPEN H5E_CANTDELETE_g)
+#define H5E_BADITER (H5OPEN H5E_BADITER_g)
+#define H5E_CANTPACK (H5OPEN H5E_CANTPACK_g)
+#define H5E_CANTRESET (H5OPEN H5E_CANTRESET_g)
+#define H5E_CANTRENAME (H5OPEN H5E_CANTRENAME_g)
+H5_DLLVAR hid_t H5E_LINKCOUNT_g; /* Bad object header link count */
+H5_DLLVAR hid_t H5E_VERSION_g; /* Wrong version number */
+H5_DLLVAR hid_t H5E_ALIGNMENT_g; /* Alignment error */
+H5_DLLVAR hid_t H5E_BADMESG_g; /* Unrecognized message */
+H5_DLLVAR hid_t H5E_CANTDELETE_g; /* Can't delete message */
+H5_DLLVAR hid_t H5E_BADITER_g; /* Iteration failed */
+H5_DLLVAR hid_t H5E_CANTPACK_g; /* Can't pack messages */
+H5_DLLVAR hid_t H5E_CANTRESET_g; /* Can't reset object */
+H5_DLLVAR hid_t H5E_CANTRENAME_g; /* Unable to rename object */
+
+/* System level errors */
+#define H5E_SYSERRSTR (H5OPEN H5E_SYSERRSTR_g)
+H5_DLLVAR hid_t H5E_SYSERRSTR_g; /* System error message */
+
+/* I/O pipeline errors */
+#define H5E_NOFILTER (H5OPEN H5E_NOFILTER_g)
+#define H5E_CALLBACK (H5OPEN H5E_CALLBACK_g)
+#define H5E_CANAPPLY (H5OPEN H5E_CANAPPLY_g)
+#define H5E_SETLOCAL (H5OPEN H5E_SETLOCAL_g)
+#define H5E_NOENCODER (H5OPEN H5E_NOENCODER_g)
+#define H5E_CANTFILTER (H5OPEN H5E_CANTFILTER_g)
+H5_DLLVAR hid_t H5E_NOFILTER_g; /* Requested filter is not available */
+H5_DLLVAR hid_t H5E_CALLBACK_g; /* Callback failed */
+H5_DLLVAR hid_t H5E_CANAPPLY_g; /* Error from filter 'can apply' callback */
+H5_DLLVAR hid_t H5E_SETLOCAL_g; /* Error from filter 'set local' callback */
+H5_DLLVAR hid_t H5E_NOENCODER_g; /* Filter present but encoding disabled */
+H5_DLLVAR hid_t H5E_CANTFILTER_g; /* Filter operation failed */
+
+/* Group related errors */
+#define H5E_CANTOPENOBJ (H5OPEN H5E_CANTOPENOBJ_g)
+#define H5E_CANTCLOSEOBJ (H5OPEN H5E_CANTCLOSEOBJ_g)
+#define H5E_COMPLEN (H5OPEN H5E_COMPLEN_g)
+#define H5E_PATH (H5OPEN H5E_PATH_g)
+H5_DLLVAR hid_t H5E_CANTOPENOBJ_g; /* Can't open object */
+H5_DLLVAR hid_t H5E_CANTCLOSEOBJ_g; /* Can't close object */
+H5_DLLVAR hid_t H5E_COMPLEN_g; /* Name component is too long */
+H5_DLLVAR hid_t H5E_PATH_g; /* Problem with path to object */
+
+/* No error */
+#define H5E_NONE_MINOR (H5OPEN H5E_NONE_MINOR_g)
+H5_DLLVAR hid_t H5E_NONE_MINOR_g; /* No error */
+
+/* Plugin errors */
+#define H5E_OPENERROR (H5OPEN H5E_OPENERROR_g)
+H5_DLLVAR hid_t H5E_OPENERROR_g; /* Can't open directory or file */
+
+/* File accessibilty errors */
+#define H5E_FILEEXISTS (H5OPEN H5E_FILEEXISTS_g)
+#define H5E_FILEOPEN (H5OPEN H5E_FILEOPEN_g)
+#define H5E_CANTCREATE (H5OPEN H5E_CANTCREATE_g)
+#define H5E_CANTOPENFILE (H5OPEN H5E_CANTOPENFILE_g)
+#define H5E_CANTCLOSEFILE (H5OPEN H5E_CANTCLOSEFILE_g)
+#define H5E_NOTHDF5 (H5OPEN H5E_NOTHDF5_g)
+#define H5E_BADFILE (H5OPEN H5E_BADFILE_g)
+#define H5E_TRUNCATED (H5OPEN H5E_TRUNCATED_g)
+#define H5E_MOUNT (H5OPEN H5E_MOUNT_g)
+H5_DLLVAR hid_t H5E_FILEEXISTS_g; /* File already exists */
+H5_DLLVAR hid_t H5E_FILEOPEN_g; /* File already open */
+H5_DLLVAR hid_t H5E_CANTCREATE_g; /* Unable to create file */
+H5_DLLVAR hid_t H5E_CANTOPENFILE_g; /* Unable to open file */
+H5_DLLVAR hid_t H5E_CANTCLOSEFILE_g; /* Unable to close file */
+H5_DLLVAR hid_t H5E_NOTHDF5_g; /* Not an HDF5 file */
+H5_DLLVAR hid_t H5E_BADFILE_g; /* Bad file ID accessed */
+H5_DLLVAR hid_t H5E_TRUNCATED_g; /* File has been truncated */
+H5_DLLVAR hid_t H5E_MOUNT_g; /* File mount error */
+
+/* Object atom related errors */
+#define H5E_BADATOM (H5OPEN H5E_BADATOM_g)
+#define H5E_BADGROUP (H5OPEN H5E_BADGROUP_g)
+#define H5E_CANTREGISTER (H5OPEN H5E_CANTREGISTER_g)
+#define H5E_CANTINC (H5OPEN H5E_CANTINC_g)
+#define H5E_CANTDEC (H5OPEN H5E_CANTDEC_g)
+#define H5E_NOIDS (H5OPEN H5E_NOIDS_g)
+H5_DLLVAR hid_t H5E_BADATOM_g; /* Unable to find atom information (already closed?) */
+H5_DLLVAR hid_t H5E_BADGROUP_g; /* Unable to find ID group information */
+H5_DLLVAR hid_t H5E_CANTREGISTER_g; /* Unable to register new atom */
+H5_DLLVAR hid_t H5E_CANTINC_g; /* Unable to increment reference count */
+H5_DLLVAR hid_t H5E_CANTDEC_g; /* Unable to decrement reference count */
+H5_DLLVAR hid_t H5E_NOIDS_g; /* Out of IDs for group */
+
+/* Cache related errors */
+#define H5E_CANTFLUSH (H5OPEN H5E_CANTFLUSH_g)
+#define H5E_CANTSERIALIZE (H5OPEN H5E_CANTSERIALIZE_g)
+#define H5E_CANTLOAD (H5OPEN H5E_CANTLOAD_g)
+#define H5E_PROTECT (H5OPEN H5E_PROTECT_g)
+#define H5E_NOTCACHED (H5OPEN H5E_NOTCACHED_g)
+#define H5E_SYSTEM (H5OPEN H5E_SYSTEM_g)
+#define H5E_CANTINS (H5OPEN H5E_CANTINS_g)
+#define H5E_CANTPROTECT (H5OPEN H5E_CANTPROTECT_g)
+#define H5E_CANTUNPROTECT (H5OPEN H5E_CANTUNPROTECT_g)
+#define H5E_CANTPIN (H5OPEN H5E_CANTPIN_g)
+#define H5E_CANTUNPIN (H5OPEN H5E_CANTUNPIN_g)
+#define H5E_CANTMARKDIRTY (H5OPEN H5E_CANTMARKDIRTY_g)
+#define H5E_CANTDIRTY (H5OPEN H5E_CANTDIRTY_g)
+#define H5E_CANTEXPUNGE (H5OPEN H5E_CANTEXPUNGE_g)
+#define H5E_CANTRESIZE (H5OPEN H5E_CANTRESIZE_g)
+H5_DLLVAR hid_t H5E_CANTFLUSH_g; /* Unable to flush data from cache */
+H5_DLLVAR hid_t H5E_CANTSERIALIZE_g; /* Unable to serialize data from cache */
+H5_DLLVAR hid_t H5E_CANTLOAD_g; /* Unable to load metadata into cache */
+H5_DLLVAR hid_t H5E_PROTECT_g; /* Protected metadata error */
+H5_DLLVAR hid_t H5E_NOTCACHED_g; /* Metadata not currently cached */
+H5_DLLVAR hid_t H5E_SYSTEM_g; /* Internal error detected */
+H5_DLLVAR hid_t H5E_CANTINS_g; /* Unable to insert metadata into cache */
+H5_DLLVAR hid_t H5E_CANTPROTECT_g; /* Unable to protect metadata */
+H5_DLLVAR hid_t H5E_CANTUNPROTECT_g; /* Unable to unprotect metadata */
+H5_DLLVAR hid_t H5E_CANTPIN_g; /* Unable to pin cache entry */
+H5_DLLVAR hid_t H5E_CANTUNPIN_g; /* Unable to un-pin cache entry */
+H5_DLLVAR hid_t H5E_CANTMARKDIRTY_g; /* Unable to mark a pinned entry as dirty */
+H5_DLLVAR hid_t H5E_CANTDIRTY_g; /* Unable to mark metadata as dirty */
+H5_DLLVAR hid_t H5E_CANTEXPUNGE_g; /* Unable to expunge a metadata cache entry */
+H5_DLLVAR hid_t H5E_CANTRESIZE_g; /* Unable to resize a metadata cache entry */
+
+/* Link related errors */
+#define H5E_TRAVERSE (H5OPEN H5E_TRAVERSE_g)
+#define H5E_NLINKS (H5OPEN H5E_NLINKS_g)
+#define H5E_NOTREGISTERED (H5OPEN H5E_NOTREGISTERED_g)
+#define H5E_CANTMOVE (H5OPEN H5E_CANTMOVE_g)
+#define H5E_CANTSORT (H5OPEN H5E_CANTSORT_g)
+H5_DLLVAR hid_t H5E_TRAVERSE_g; /* Link traversal failure */
+H5_DLLVAR hid_t H5E_NLINKS_g; /* Too many soft links in path */
+H5_DLLVAR hid_t H5E_NOTREGISTERED_g; /* Link class not registered */
+H5_DLLVAR hid_t H5E_CANTMOVE_g; /* Can't move object */
+H5_DLLVAR hid_t H5E_CANTSORT_g; /* Can't sort objects */
+
+/* Parallel MPI errors */
+#define H5E_MPI (H5OPEN H5E_MPI_g)
+#define H5E_MPIERRSTR (H5OPEN H5E_MPIERRSTR_g)
+#define H5E_CANTRECV (H5OPEN H5E_CANTRECV_g)
+H5_DLLVAR hid_t H5E_MPI_g; /* Some MPI function failed */
+H5_DLLVAR hid_t H5E_MPIERRSTR_g; /* MPI Error String */
+H5_DLLVAR hid_t H5E_CANTRECV_g; /* Can't receive data */
+
+/* Dataspace errors */
+#define H5E_CANTCLIP (H5OPEN H5E_CANTCLIP_g)
+#define H5E_CANTCOUNT (H5OPEN H5E_CANTCOUNT_g)
+#define H5E_CANTSELECT (H5OPEN H5E_CANTSELECT_g)
+#define H5E_CANTNEXT (H5OPEN H5E_CANTNEXT_g)
+#define H5E_BADSELECT (H5OPEN H5E_BADSELECT_g)
+#define H5E_CANTCOMPARE (H5OPEN H5E_CANTCOMPARE_g)
+H5_DLLVAR hid_t H5E_CANTCLIP_g; /* Can't clip hyperslab region */
+H5_DLLVAR hid_t H5E_CANTCOUNT_g; /* Can't count elements */
+H5_DLLVAR hid_t H5E_CANTSELECT_g; /* Can't select hyperslab */
+H5_DLLVAR hid_t H5E_CANTNEXT_g; /* Can't move to next iterator location */
+H5_DLLVAR hid_t H5E_BADSELECT_g; /* Invalid selection */
+H5_DLLVAR hid_t H5E_CANTCOMPARE_g; /* Can't compare objects */
+
+/* Argument errors */
+#define H5E_UNINITIALIZED (H5OPEN H5E_UNINITIALIZED_g)
+#define H5E_UNSUPPORTED (H5OPEN H5E_UNSUPPORTED_g)
+#define H5E_BADTYPE (H5OPEN H5E_BADTYPE_g)
+#define H5E_BADRANGE (H5OPEN H5E_BADRANGE_g)
+#define H5E_BADVALUE (H5OPEN H5E_BADVALUE_g)
+H5_DLLVAR hid_t H5E_UNINITIALIZED_g; /* Information is uinitialized */
+H5_DLLVAR hid_t H5E_UNSUPPORTED_g; /* Feature is unsupported */
+H5_DLLVAR hid_t H5E_BADTYPE_g; /* Inappropriate type */
+H5_DLLVAR hid_t H5E_BADRANGE_g; /* Out of range */
+H5_DLLVAR hid_t H5E_BADVALUE_g; /* Bad value */
+
+/* B-tree related errors */
+#define H5E_NOTFOUND (H5OPEN H5E_NOTFOUND_g)
+#define H5E_EXISTS (H5OPEN H5E_EXISTS_g)
+#define H5E_CANTENCODE (H5OPEN H5E_CANTENCODE_g)
+#define H5E_CANTDECODE (H5OPEN H5E_CANTDECODE_g)
+#define H5E_CANTSPLIT (H5OPEN H5E_CANTSPLIT_g)
+#define H5E_CANTREDISTRIBUTE (H5OPEN H5E_CANTREDISTRIBUTE_g)
+#define H5E_CANTSWAP (H5OPEN H5E_CANTSWAP_g)
+#define H5E_CANTINSERT (H5OPEN H5E_CANTINSERT_g)
+#define H5E_CANTLIST (H5OPEN H5E_CANTLIST_g)
+#define H5E_CANTMODIFY (H5OPEN H5E_CANTMODIFY_g)
+#define H5E_CANTREMOVE (H5OPEN H5E_CANTREMOVE_g)
+H5_DLLVAR hid_t H5E_NOTFOUND_g; /* Object not found */
+H5_DLLVAR hid_t H5E_EXISTS_g; /* Object already exists */
+H5_DLLVAR hid_t H5E_CANTENCODE_g; /* Unable to encode value */
+H5_DLLVAR hid_t H5E_CANTDECODE_g; /* Unable to decode value */
+H5_DLLVAR hid_t H5E_CANTSPLIT_g; /* Unable to split node */
+H5_DLLVAR hid_t H5E_CANTREDISTRIBUTE_g; /* Unable to redistribute records */
+H5_DLLVAR hid_t H5E_CANTSWAP_g; /* Unable to swap records */
+H5_DLLVAR hid_t H5E_CANTINSERT_g; /* Unable to insert object */
+H5_DLLVAR hid_t H5E_CANTLIST_g; /* Unable to list node */
+H5_DLLVAR hid_t H5E_CANTMODIFY_g; /* Unable to modify record */
+H5_DLLVAR hid_t H5E_CANTREMOVE_g; /* Unable to remove object */
+
+/* Datatype conversion errors */
+#define H5E_CANTCONVERT (H5OPEN H5E_CANTCONVERT_g)
+#define H5E_BADSIZE (H5OPEN H5E_BADSIZE_g)
+H5_DLLVAR hid_t H5E_CANTCONVERT_g; /* Can't convert datatypes */
+H5_DLLVAR hid_t H5E_BADSIZE_g; /* Bad size for object */
+
+#endif /* H5Epubgen_H */
diff --git a/privatemodules/nc4/include/H5Epublic.h b/privatemodules/nc4/include/H5Epublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..932b8574b7e473e43fd4111ddcc3086b03234bd5
--- /dev/null
+++ b/privatemodules/nc4/include/H5Epublic.h
@@ -0,0 +1,228 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5E module.
+ */
+#ifndef _H5Epublic_H
+#define _H5Epublic_H
+
+#include <stdio.h> /*FILE arg of H5Eprint() */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/* Value for the default error stack */
+#define H5E_DEFAULT 0
+
+/* Different kinds of error information */
+typedef enum H5E_type_t {
+ H5E_MAJOR,
+ H5E_MINOR
+} H5E_type_t;
+
+/* Information about an error; element of error stack */
+typedef struct H5E_error2_t {
+ hid_t cls_id; /*class ID */
+ hid_t maj_num; /*major error ID */
+ hid_t min_num; /*minor error number */
+ unsigned line; /*line in file where error occurs */
+ const char *func_name; /*function in which error occurred */
+ const char *file_name; /*file in which error occurred */
+ const char *desc; /*optional supplied description */
+} H5E_error2_t;
+
+/* When this header is included from a private header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/* HDF5 error class */
+#define H5E_ERR_CLS (H5OPEN H5E_ERR_CLS_g)
+H5_DLLVAR hid_t H5E_ERR_CLS_g;
+
+/* Include the automatically generated public header information */
+/* (This includes the list of major and minor error codes for the library) */
+#include "H5Epubgen.h"
+
+/*
+ * One often needs to temporarily disable automatic error reporting when
+ * trying something that's likely or expected to fail. The code to try can
+ * be nested between calls to H5Eget_auto() and H5Eset_auto(), but it's
+ * easier just to use this macro like:
+ * H5E_BEGIN_TRY {
+ * ...stuff here that's likely to fail...
+ * } H5E_END_TRY;
+ *
+ * Warning: don't break, return, or longjmp() from the body of the loop or
+ * the error reporting won't be properly restored!
+ *
+ * These two macros still use the old API functions for backward compatibility
+ * purpose.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+#define H5E_BEGIN_TRY { \
+ unsigned H5E_saved_is_v2; \
+ union { \
+ H5E_auto1_t efunc1; \
+ H5E_auto2_t efunc2; \
+ } H5E_saved; \
+ void *H5E_saved_edata; \
+ \
+ (void)H5Eauto_is_v2(H5E_DEFAULT, &H5E_saved_is_v2); \
+ if(H5E_saved_is_v2) { \
+ (void)H5Eget_auto2(H5E_DEFAULT, &H5E_saved.efunc2, &H5E_saved_edata); \
+ (void)H5Eset_auto2(H5E_DEFAULT, NULL, NULL); \
+ } else { \
+ (void)H5Eget_auto1(&H5E_saved.efunc1, &H5E_saved_edata); \
+ (void)H5Eset_auto1(NULL, NULL); \
+ }
+
+#define H5E_END_TRY \
+ if(H5E_saved_is_v2) \
+ (void)H5Eset_auto2(H5E_DEFAULT, H5E_saved.efunc2, H5E_saved_edata); \
+ else \
+ (void)H5Eset_auto1(H5E_saved.efunc1, H5E_saved_edata); \
+}
+#else /* H5_NO_DEPRECATED_SYMBOLS */
+#define H5E_BEGIN_TRY { \
+ H5E_auto_t saved_efunc; \
+ void *H5E_saved_edata; \
+ \
+ (void)H5Eget_auto(H5E_DEFAULT, &saved_efunc, &H5E_saved_edata); \
+ (void)H5Eset_auto(H5E_DEFAULT, NULL, NULL);
+
+#define H5E_END_TRY \
+ (void)H5Eset_auto(H5E_DEFAULT, saved_efunc, H5E_saved_edata); \
+}
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+/*
+ * Public API Convenience Macros for Error reporting - Documented
+ */
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in */
+#define H5Epush_sim(func, cls, maj, min, str) H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str)
+
+/*
+ * Public API Convenience Macros for Error reporting - Undocumented
+ */
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in */
+/* And return after pushing error onto stack */
+#define H5Epush_ret(func, cls, maj, min, str, ret) { \
+ H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str); \
+ return(ret); \
+}
+
+/* Use the Standard C __FILE__ & __LINE__ macros instead of typing them in
+ * And goto a label after pushing error onto stack.
+ */
+#define H5Epush_goto(func, cls, maj, min, str, label) { \
+ H5Epush2(H5E_DEFAULT, __FILE__, func, __LINE__, cls, maj, min, str); \
+ goto label; \
+}
+
+/* Error stack traversal direction */
+typedef enum H5E_direction_t {
+ H5E_WALK_UPWARD = 0, /*begin deep, end at API function */
+ H5E_WALK_DOWNWARD = 1 /*begin at API function, end deep */
+} H5E_direction_t;
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Error stack traversal callback function pointers */
+typedef herr_t (*H5E_walk2_t)(unsigned n, const H5E_error2_t *err_desc,
+ void *client_data);
+typedef herr_t (*H5E_auto2_t)(hid_t estack, void *client_data);
+
+/* Public API functions */
+H5_DLL hid_t H5Eregister_class(const char *cls_name, const char *lib_name,
+ const char *version);
+H5_DLL herr_t H5Eunregister_class(hid_t class_id);
+H5_DLL herr_t H5Eclose_msg(hid_t err_id);
+H5_DLL hid_t H5Ecreate_msg(hid_t cls, H5E_type_t msg_type, const char *msg);
+H5_DLL hid_t H5Ecreate_stack(void);
+H5_DLL hid_t H5Eget_current_stack(void);
+H5_DLL herr_t H5Eclose_stack(hid_t stack_id);
+H5_DLL ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size);
+H5_DLL herr_t H5Eset_current_stack(hid_t err_stack_id);
+H5_DLL herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line,
+ hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...);
+H5_DLL herr_t H5Epop(hid_t err_stack, size_t count);
+H5_DLL herr_t H5Eprint2(hid_t err_stack, FILE *stream);
+H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func,
+ void *client_data);
+H5_DLL herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data);
+H5_DLL herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data);
+H5_DLL herr_t H5Eclear2(hid_t err_stack);
+H5_DLL herr_t H5Eauto_is_v2(hid_t err_stack, unsigned *is_stack);
+H5_DLL ssize_t H5Eget_msg(hid_t msg_id, H5E_type_t *type, char *msg,
+ size_t size);
+H5_DLL ssize_t H5Eget_num(hid_t error_stack_id);
+
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Typedefs */
+
+/* Alias major & minor error types to hid_t's, for compatibility with new
+ * error API in v1.8
+ */
+typedef hid_t H5E_major_t;
+typedef hid_t H5E_minor_t;
+
+/* Information about an error element of error stack. */
+typedef struct H5E_error1_t {
+ H5E_major_t maj_num; /*major error number */
+ H5E_minor_t min_num; /*minor error number */
+ const char *func_name; /*function in which error occurred */
+ const char *file_name; /*file in which error occurred */
+ unsigned line; /*line in file where error occurs */
+ const char *desc; /*optional supplied description */
+} H5E_error1_t;
+
+/* Error stack traversal callback function pointers */
+typedef herr_t (*H5E_walk1_t)(int n, H5E_error1_t *err_desc, void *client_data);
+typedef herr_t (*H5E_auto1_t)(void *client_data);
+
+/* Function prototypes */
+H5_DLL herr_t H5Eclear1(void);
+H5_DLL herr_t H5Eget_auto1(H5E_auto1_t *func, void **client_data);
+H5_DLL herr_t H5Epush1(const char *file, const char *func, unsigned line,
+ H5E_major_t maj, H5E_minor_t min, const char *str);
+H5_DLL herr_t H5Eprint1(FILE *stream);
+H5_DLL herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data);
+H5_DLL herr_t H5Ewalk1(H5E_direction_t direction, H5E_walk1_t func,
+ void *client_data);
+H5_DLL char *H5Eget_major(H5E_major_t maj);
+H5_DLL char *H5Eget_minor(H5E_minor_t min);
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* end _H5Epublic_H */
+
diff --git a/privatemodules/nc4/include/H5FDcore.h b/privatemodules/nc4/include/H5FDcore.h
new file mode 100644
index 0000000000000000000000000000000000000000..dca110ea20826e9a7c23f286d1153a4aed69b26b
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDcore.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDcore_H
+#define H5FDcore_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_CORE (H5FD_core_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_core_init(void);
+H5_DLL void H5FD_core_term(void);
+H5_DLL herr_t H5Pset_fapl_core(hid_t fapl_id, size_t increment,
+ hbool_t backing_store);
+H5_DLL herr_t H5Pget_fapl_core(hid_t fapl_id, size_t *increment/*out*/,
+ hbool_t *backing_store/*out*/);
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5FDdirect.h b/privatemodules/nc4/include/H5FDdirect.h
new file mode 100644
index 0000000000000000000000000000000000000000..26c70f30fa09a5077c4dffcb78faf500e30a3dc6
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDdirect.h
@@ -0,0 +1,57 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Raymond Lu <slu@hdfgroup.uiuc.edu>
+ * Wednesday, 20 September 2006
+ *
+ * Purpose: The public header file for the direct driver.
+ */
+#ifndef H5FDdirect_H
+#define H5FDdirect_H
+
+#include "H5Ipublic.h"
+
+#ifdef H5_HAVE_DIRECT
+# define H5FD_DIRECT (H5FD_direct_init())
+#else
+# define H5FD_DIRECT (-1)
+#endif /* H5_HAVE_DIRECT */
+
+#ifdef H5_HAVE_DIRECT
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Default values for memory boundary, file block size, and maximal copy buffer size.
+ * Application can set these values through the function H5Pset_fapl_direct. */
+#define MBOUNDARY_DEF 4096
+#define FBSIZE_DEF 4096
+#define CBSIZE_DEF 16*1024*1024
+
+H5_DLL hid_t H5FD_direct_init(void);
+H5_DLL void H5FD_direct_term(void);
+H5_DLL herr_t H5Pset_fapl_direct(hid_t fapl_id, size_t alignment, size_t block_size,
+ size_t cbuf_size);
+H5_DLL herr_t H5Pget_fapl_direct(hid_t fapl_id, size_t *boundary/*out*/,
+ size_t *block_size/*out*/, size_t *cbuf_size/*out*/);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5_HAVE_DIRECT */
+
+#endif
diff --git a/privatemodules/nc4/include/H5FDfamily.h b/privatemodules/nc4/include/H5FDfamily.h
new file mode 100644
index 0000000000000000000000000000000000000000..dcb63e647e16d7083e4645f316d16479aad3d923
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDfamily.h
@@ -0,0 +1,44 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 4, 1999
+ *
+ * Purpose: The public header file for the family driver.
+ */
+#ifndef H5FDfamily_H
+#define H5FDfamily_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_FAMILY (H5FD_family_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_family_init(void);
+H5_DLL void H5FD_family_term(void);
+H5_DLL herr_t H5Pset_fapl_family(hid_t fapl_id, hsize_t memb_size,
+ hid_t memb_fapl_id);
+H5_DLL herr_t H5Pget_fapl_family(hid_t fapl_id, hsize_t *memb_size/*out*/,
+ hid_t *memb_fapl_id/*out*/);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5FDlog.h b/privatemodules/nc4/include/H5FDlog.h
new file mode 100644
index 0000000000000000000000000000000000000000..ffc4df1a56ce0a55fadd5b94f36995a291dc0a23
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDlog.h
@@ -0,0 +1,72 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Monday, April 17, 2000
+ *
+ * Purpose: The public header file for the log driver.
+ */
+#ifndef H5FDlog_H
+#define H5FDlog_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_LOG (H5FD_log_init())
+
+/* Flags for H5Pset_fapl_log() */
+/* Flags for tracking where reads/writes/seeks occur */
+#define H5FD_LOG_LOC_READ 0x00000001
+#define H5FD_LOG_LOC_WRITE 0x00000002
+#define H5FD_LOG_LOC_SEEK 0x00000004
+#define H5FD_LOG_LOC_IO (H5FD_LOG_LOC_READ|H5FD_LOG_LOC_WRITE|H5FD_LOG_LOC_SEEK)
+/* Flags for tracking number of times each byte is read/written */
+#define H5FD_LOG_FILE_READ 0x00000008
+#define H5FD_LOG_FILE_WRITE 0x00000010
+#define H5FD_LOG_FILE_IO (H5FD_LOG_FILE_READ|H5FD_LOG_FILE_WRITE)
+/* Flag for tracking "flavor" (type) of information stored at each byte */
+#define H5FD_LOG_FLAVOR 0x00000020
+/* Flags for tracking total number of reads/writes/seeks/truncates */
+#define H5FD_LOG_NUM_READ 0x00000040
+#define H5FD_LOG_NUM_WRITE 0x00000080
+#define H5FD_LOG_NUM_SEEK 0x00000100
+#define H5FD_LOG_NUM_TRUNCATE 0x00000200
+#define H5FD_LOG_NUM_IO (H5FD_LOG_NUM_READ|H5FD_LOG_NUM_WRITE|H5FD_LOG_NUM_SEEK|H5FD_LOG_NUM_TRUNCATE)
+/* Flags for tracking time spent in open/stat/read/write/seek/close */
+#define H5FD_LOG_TIME_OPEN 0x00000400
+#define H5FD_LOG_TIME_STAT 0x00000800
+#define H5FD_LOG_TIME_READ 0x00001000
+#define H5FD_LOG_TIME_WRITE 0x00002000
+#define H5FD_LOG_TIME_SEEK 0x00004000
+#define H5FD_LOG_TIME_CLOSE 0x00008000
+#define H5FD_LOG_TIME_IO (H5FD_LOG_TIME_OPEN|H5FD_LOG_TIME_STAT|H5FD_LOG_TIME_READ|H5FD_LOG_TIME_WRITE|H5FD_LOG_TIME_SEEK|H5FD_LOG_TIME_CLOSE)
+/* Flag for tracking allocation of space in file */
+#define H5FD_LOG_ALLOC 0x00010000
+#define H5FD_LOG_ALL (H5FD_LOG_ALLOC|H5FD_LOG_TIME_IO|H5FD_LOG_NUM_IO|H5FD_LOG_FLAVOR|H5FD_LOG_FILE_IO|H5FD_LOG_LOC_IO)
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_log_init(void);
+H5_DLL void H5FD_log_term(void);
+H5_DLL herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5FDmpi.h b/privatemodules/nc4/include/H5FDmpi.h
new file mode 100644
index 0000000000000000000000000000000000000000..784fe70c0568c2ec8e662a327f6299a6727c96c0
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDmpi.h
@@ -0,0 +1,62 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
+ * Friday, January 30, 2004
+ *
+ * Purpose: The public header file for common items for all MPI VFL drivers
+ */
+#ifndef H5FDmpi_H
+#define H5FDmpi_H
+
+/***** Macros for One linked collective IO case. *****/
+/* The default value to do one linked collective IO for all chunks.
+ If the average number of chunks per process is greater than this value,
+ the library will create an MPI derived datatype to link all chunks to do collective IO.
+ The user can set this value through an API. */
+
+#define H5D_ONE_LINK_CHUNK_IO_THRESHOLD 0
+/***** Macros for multi-chunk collective IO case. *****/
+/* The default value of the threshold to do collective IO for this chunk.
+ If the average percentage of processes per chunk is greater than the default value,
+ collective IO is done for this chunk.
+*/
+
+#define H5D_MULTI_CHUNK_IO_COL_THRESHOLD 60
+/* Type of I/O for data transfer properties */
+typedef enum H5FD_mpio_xfer_t {
+ H5FD_MPIO_INDEPENDENT = 0, /*zero is the default*/
+ H5FD_MPIO_COLLECTIVE
+} H5FD_mpio_xfer_t;
+
+/* Type of chunked dataset I/O */
+typedef enum H5FD_mpio_chunk_opt_t {
+ H5FD_MPIO_CHUNK_DEFAULT = 0,
+ H5FD_MPIO_CHUNK_ONE_IO, /*zero is the default*/
+ H5FD_MPIO_CHUNK_MULTI_IO
+} H5FD_mpio_chunk_opt_t;
+
+/* Type of collective I/O */
+typedef enum H5FD_mpio_collective_opt_t {
+ H5FD_MPIO_COLLECTIVE_IO = 0,
+ H5FD_MPIO_INDIVIDUAL_IO /*zero is the default*/
+} H5FD_mpio_collective_opt_t;
+
+/* Include all the MPI VFL headers */
+#include "H5FDmpio.h" /* MPI I/O file driver */
+
+#endif /* H5FDmpi_H */
+
diff --git a/privatemodules/nc4/include/H5FDmpio.h b/privatemodules/nc4/include/H5FDmpio.h
new file mode 100644
index 0000000000000000000000000000000000000000..1d91cc32cb45bde9abc4c4248724f92617aa218c
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDmpio.h
@@ -0,0 +1,66 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the mpio driver.
+ */
+#ifndef H5FDmpio_H
+#define H5FDmpio_H
+
+/* Macros */
+
+#ifdef H5_HAVE_PARALLEL
+# define H5FD_MPIO (H5FD_mpio_init())
+#else
+# define H5FD_MPIO (-1)
+#endif /* H5_HAVE_PARALLEL */
+
+#ifdef H5_HAVE_PARALLEL
+/*Turn on H5FDmpio_debug if H5F_DEBUG is on */
+#ifdef H5F_DEBUG
+#ifndef H5FDmpio_DEBUG
+#define H5FDmpio_DEBUG
+#endif
+#endif
+
+/* Global var whose value comes from environment variable */
+/* (Defined in H5FDmpio.c) */
+H5_DLLVAR hbool_t H5FD_mpi_opt_types_g;
+
+/* Function prototypes */
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_mpio_init(void);
+H5_DLL void H5FD_mpio_term(void);
+H5_DLL herr_t H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info);
+H5_DLL herr_t H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm/*out*/,
+ MPI_Info *info/*out*/);
+H5_DLL herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode);
+H5_DLL herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode/*out*/);
+H5_DLL herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc);
+H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk);
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* H5_HAVE_PARALLEL */
+
+#endif
diff --git a/privatemodules/nc4/include/H5FDmulti.h b/privatemodules/nc4/include/H5FDmulti.h
new file mode 100644
index 0000000000000000000000000000000000000000..b45a02957004a98a13c5133e022aa859ba2863e3
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDmulti.h
@@ -0,0 +1,49 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the "multi" driver.
+ */
+#ifndef H5FDmulti_H
+#define H5FDmulti_H
+
+#include "H5Ipublic.h"
+#include "H5Ppublic.h" /* Property lists */
+#include "H5Fpublic.h"
+
+#define H5FD_MULTI (H5FD_multi_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+H5_DLL hid_t H5FD_multi_init(void);
+H5_DLL void H5FD_multi_term(void);
+H5_DLL herr_t H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map,
+ const hid_t *memb_fapl, const char * const *memb_name,
+ const haddr_t *memb_addr, hbool_t relax);
+H5_DLL herr_t H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map/*out*/,
+ hid_t *memb_fapl/*out*/, char **memb_name/*out*/,
+ haddr_t *memb_addr/*out*/, hbool_t *relax/*out*/);
+H5_DLL herr_t H5Pset_fapl_split(hid_t fapl, const char *meta_ext,
+ hid_t meta_plist_id, const char *raw_ext,
+ hid_t raw_plist_id);
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5FDpublic.h b/privatemodules/nc4/include/H5FDpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..f1b3920fb6a324db00aa51fced31a50e84553af6
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDpublic.h
@@ -0,0 +1,318 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, July 26, 1999
+ */
+#ifndef _H5FDpublic_H
+#define _H5FDpublic_H
+
+#include "H5public.h"
+#include "H5Fpublic.h" /*for H5F_close_degree_t */
+
+#define H5_HAVE_VFL 1 /*define a convenient app feature test*/
+#define H5FD_VFD_DEFAULT 0 /* Default VFL driver value */
+
+/* Types of allocation requests: see H5Fpublic.h */
+typedef enum H5F_mem_t H5FD_mem_t;
+
+/* Map "fractal heap" header blocks to 'ohdr' type file memory, since its
+ * a fair amount of work to add a new kind of file memory and they are similar
+ * enough to object headers and probably too minor to deserve their own type.
+ *
+ * Map "fractal heap" indirect blocks to 'ohdr' type file memory, since they
+ * are similar to fractal heap header blocks.
+ *
+ * Map "fractal heap" direct blocks to 'lheap' type file memory, since they
+ * will be replacing local heaps.
+ *
+ * Map "fractal heap" 'huge' objects to 'draw' type file memory, since they
+ * represent large objects that are directly stored in the file.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_FHEAP_HDR H5FD_MEM_OHDR
+#define H5FD_MEM_FHEAP_IBLOCK H5FD_MEM_OHDR
+#define H5FD_MEM_FHEAP_DBLOCK H5FD_MEM_LHEAP
+#define H5FD_MEM_FHEAP_HUGE_OBJ H5FD_MEM_DRAW
+
+/* Map "free space" header blocks to 'ohdr' type file memory, since its
+ * a fair amount of work to add a new kind of file memory and they are similar
+ * enough to object headers and probably too minor to deserve their own type.
+ *
+ * Map "free space" serialized sections to 'lheap' type file memory, since they
+ * are similar enough to local heap info.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_FSPACE_HDR H5FD_MEM_OHDR
+#define H5FD_MEM_FSPACE_SINFO H5FD_MEM_LHEAP
+
+/* Map "shared object header message" master table to 'ohdr' type file memory,
+ * since its a fair amount of work to add a new kind of file memory and they are
+ * similar enough to object headers and probably too minor to deserve their own
+ * type.
+ *
+ * Map "shared object header message" indices to 'btree' type file memory,
+ * since they are similar enough to B-tree nodes.
+ *
+ * -QAK
+ */
+#define H5FD_MEM_SOHM_TABLE H5FD_MEM_OHDR
+#define H5FD_MEM_SOHM_INDEX H5FD_MEM_BTREE
+
+/*
+ * A free-list map which maps all types of allocation requests to a single
+ * free list. This is useful for drivers that don't really care about
+ * keeping different requests segregated in the underlying file and which
+ * want to make most efficient reuse of freed memory. The use of the
+ * H5FD_MEM_SUPER free list is arbitrary.
+ */
+#define H5FD_FLMAP_SINGLE { \
+ H5FD_MEM_SUPER, /*default*/ \
+ H5FD_MEM_SUPER, /*super*/ \
+ H5FD_MEM_SUPER, /*btree*/ \
+ H5FD_MEM_SUPER, /*draw*/ \
+ H5FD_MEM_SUPER, /*gheap*/ \
+ H5FD_MEM_SUPER, /*lheap*/ \
+ H5FD_MEM_SUPER /*ohdr*/ \
+}
+
+/*
+ * A free-list map which segregates requests into `raw' or `meta' data
+ * pools.
+ */
+#define H5FD_FLMAP_DICHOTOMY { \
+ H5FD_MEM_SUPER, /*default*/ \
+ H5FD_MEM_SUPER, /*super*/ \
+ H5FD_MEM_SUPER, /*btree*/ \
+ H5FD_MEM_DRAW, /*draw*/ \
+ H5FD_MEM_DRAW, /*gheap*/ \
+ H5FD_MEM_SUPER, /*lheap*/ \
+ H5FD_MEM_SUPER /*ohdr*/ \
+}
+
+/*
+ * The default free list map which causes each request type to use it's own
+ * free-list.
+ */
+#define H5FD_FLMAP_DEFAULT { \
+ H5FD_MEM_DEFAULT, /*default*/ \
+ H5FD_MEM_DEFAULT, /*super*/ \
+ H5FD_MEM_DEFAULT, /*btree*/ \
+ H5FD_MEM_DEFAULT, /*draw*/ \
+ H5FD_MEM_DEFAULT, /*gheap*/ \
+ H5FD_MEM_DEFAULT, /*lheap*/ \
+ H5FD_MEM_DEFAULT /*ohdr*/ \
+}
+
+
+/* Define VFL driver features that can be enabled on a per-driver basis */
+/* These are returned with the 'query' function pointer in H5FD_class_t */
+ /*
+ * Defining the H5FD_FEAT_AGGREGATE_METADATA for a VFL driver means that
+ * the library will attempt to allocate a larger block for metadata and
+ * then sub-allocate each metadata request from that larger block.
+ */
+#define H5FD_FEAT_AGGREGATE_METADATA 0x00000001
+ /*
+ * Defining the H5FD_FEAT_ACCUMULATE_METADATA for a VFL driver means that
+ * the library will attempt to cache metadata as it is written to the file
+ * and build up a larger block of metadata to eventually pass to the VFL
+ * 'write' routine.
+ *
+ * Distinguish between updating the metadata accumulator on writes and
+ * reads. This is particularly (perhaps only, even) important for MPI-I/O
+ * where we guarantee that writes are collective, but reads may not be.
+ * If we were to allow the metadata accumulator to be written during a
+ * read operation, the application would hang.
+ */
+#define H5FD_FEAT_ACCUMULATE_METADATA_WRITE 0x00000002
+#define H5FD_FEAT_ACCUMULATE_METADATA_READ 0x00000004
+#define H5FD_FEAT_ACCUMULATE_METADATA (H5FD_FEAT_ACCUMULATE_METADATA_WRITE|H5FD_FEAT_ACCUMULATE_METADATA_READ)
+ /*
+ * Defining the H5FD_FEAT_DATA_SIEVE for a VFL driver means that
+ * the library will attempt to cache raw data as it is read from/written to
+ * a file in a "data seive" buffer. See Rajeev Thakur's papers:
+ * http://www.mcs.anl.gov/~thakur/papers/romio-coll.ps.gz
+ * http://www.mcs.anl.gov/~thakur/papers/mpio-high-perf.ps.gz
+ */
+#define H5FD_FEAT_DATA_SIEVE 0x00000008
+ /*
+ * Defining the H5FD_FEAT_AGGREGATE_SMALLDATA for a VFL driver means that
+ * the library will attempt to allocate a larger block for "small" raw data
+ * and then sub-allocate "small" raw data requests from that larger block.
+ */
+#define H5FD_FEAT_AGGREGATE_SMALLDATA 0x00000010
+ /*
+ * Defining the H5FD_FEAT_IGNORE_DRVRINFO for a VFL driver means that
+ * the library will ignore the driver info that is encoded in the file
+ * for the VFL driver. (This will cause the driver info to be eliminated
+ * from the file when it is flushed/closed, if the file is opened R/W).
+ */
+#define H5FD_FEAT_IGNORE_DRVRINFO 0x00000020
+ /*
+ * Defining the H5FD_FEAT_DIRTY_SBLK_LOAD for a VFL driver means that
+ * the library will mark the superblock dirty when the file is opened
+ * R/W. This will cause the driver info to be re-encoded when the file
+ * is flushed/closed.
+ */
+#define H5FD_FEAT_DIRTY_SBLK_LOAD 0x00000040
+ /*
+ * Defining the H5FD_FEAT_POSIX_COMPAT_HANDLE for a VFL driver means that
+ * the handle for the VFD (returned with the 'get_handle' callback) is
+ * of type 'int' and is compatible with POSIX I/O calls.
+ */
+#define H5FD_FEAT_POSIX_COMPAT_HANDLE 0x00000080
+ /*
+ * Defining the H5FD_FEAT_ALLOW_FILE_IMAGE for a VFL driver means that
+ * the driver is able to use a file image in the fapl as the initial
+ * contents of a file.
+ */
+#define H5FD_FEAT_ALLOW_FILE_IMAGE 0x00000400
+ /*
+ * Defining the H5FD_FEAT_CAN_USE_FILE_IMAGE_CALLBACKS for a VFL driver
+ * means that the driver is able to use callbacks to make a copy of the
+ * image to store in memory.
+ */
+#define H5FD_FEAT_CAN_USE_FILE_IMAGE_CALLBACKS 0x00000800
+
+
+/* Forward declaration */
+typedef struct H5FD_t H5FD_t;
+
+/* Class information for each file driver */
+typedef struct H5FD_class_t {
+ const char *name;
+ haddr_t maxaddr;
+ H5F_close_degree_t fc_degree;
+ hsize_t (*sb_size)(H5FD_t *file);
+ herr_t (*sb_encode)(H5FD_t *file, char *name/*out*/,
+ unsigned char *p/*out*/);
+ herr_t (*sb_decode)(H5FD_t *f, const char *name, const unsigned char *p);
+ size_t fapl_size;
+ void * (*fapl_get)(H5FD_t *file);
+ void * (*fapl_copy)(const void *fapl);
+ herr_t (*fapl_free)(void *fapl);
+ size_t dxpl_size;
+ void * (*dxpl_copy)(const void *dxpl);
+ herr_t (*dxpl_free)(void *dxpl);
+ H5FD_t *(*open)(const char *name, unsigned flags, hid_t fapl,
+ haddr_t maxaddr);
+ herr_t (*close)(H5FD_t *file);
+ int (*cmp)(const H5FD_t *f1, const H5FD_t *f2);
+ herr_t (*query)(const H5FD_t *f1, unsigned long *flags);
+ herr_t (*get_type_map)(const H5FD_t *file, H5FD_mem_t *type_map);
+ haddr_t (*alloc)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
+ herr_t (*free)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, hsize_t size);
+ haddr_t (*get_eoa)(const H5FD_t *file, H5FD_mem_t type);
+ herr_t (*set_eoa)(H5FD_t *file, H5FD_mem_t type, haddr_t addr);
+ haddr_t (*get_eof)(const H5FD_t *file);
+ herr_t (*get_handle)(H5FD_t *file, hid_t fapl, void**file_handle);
+ herr_t (*read)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl,
+ haddr_t addr, size_t size, void *buffer);
+ herr_t (*write)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl,
+ haddr_t addr, size_t size, const void *buffer);
+ herr_t (*flush)(H5FD_t *file, hid_t dxpl_id, unsigned closing);
+ herr_t (*truncate)(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+ herr_t (*lock)(H5FD_t *file, unsigned char *oid, unsigned lock_type, hbool_t last);
+ herr_t (*unlock)(H5FD_t *file, unsigned char *oid, hbool_t last);
+ H5FD_mem_t fl_map[H5FD_MEM_NTYPES];
+} H5FD_class_t;
+
+/* A free list is a singly-linked list of address/size pairs. */
+typedef struct H5FD_free_t {
+ haddr_t addr;
+ hsize_t size;
+ struct H5FD_free_t *next;
+} H5FD_free_t;
+
+/*
+ * The main datatype for each driver. Public fields common to all drivers
+ * are declared here and the driver appends private fields in memory.
+ */
+struct H5FD_t {
+ hid_t driver_id; /*driver ID for this file */
+ const H5FD_class_t *cls; /*constant class info */
+ unsigned long fileno; /* File 'serial' number */
+ unsigned long feature_flags; /* VFL Driver feature Flags */
+ haddr_t maxaddr; /* For this file, overrides class */
+ haddr_t base_addr; /* Base address for HDF5 data w/in file */
+
+ /* Space allocation management fields */
+ hsize_t threshold; /* Threshold for alignment */
+ hsize_t alignment; /* Allocation alignment */
+};
+
+/* Define enum for the source of file image callbacks */
+typedef enum {
+ H5FD_FILE_IMAGE_OP_NO_OP,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_SET,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_COPY,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_GET,
+ H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE,
+ H5FD_FILE_IMAGE_OP_FILE_OPEN,
+ H5FD_FILE_IMAGE_OP_FILE_RESIZE,
+ H5FD_FILE_IMAGE_OP_FILE_CLOSE
+} H5FD_file_image_op_t;
+
+/* Define structure to hold file image callbacks */
+typedef struct {
+ void *(*image_malloc)(size_t size, H5FD_file_image_op_t file_image_op,
+ void *udata);
+ void *(*image_memcpy)(void *dest, const void *src, size_t size,
+ H5FD_file_image_op_t file_image_op, void *udata);
+ void *(*image_realloc)(void *ptr, size_t size,
+ H5FD_file_image_op_t file_image_op, void *udata);
+ herr_t (*image_free)(void *ptr, H5FD_file_image_op_t file_image_op,
+ void *udata);
+ void *(*udata_copy)(void *udata);
+ herr_t (*udata_free)(void *udata);
+ void *udata;
+} H5FD_file_image_callbacks_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Function prototypes */
+H5_DLL hid_t H5FDregister(const H5FD_class_t *cls);
+H5_DLL herr_t H5FDunregister(hid_t driver_id);
+H5_DLL H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id,
+ haddr_t maxaddr);
+H5_DLL herr_t H5FDclose(H5FD_t *file);
+H5_DLL int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2);
+H5_DLL int H5FDquery(const H5FD_t *f, unsigned long *flags);
+H5_DLL haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
+H5_DLL herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, hsize_t size);
+H5_DLL haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type);
+H5_DLL herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa);
+H5_DLL haddr_t H5FDget_eof(H5FD_t *file);
+H5_DLL herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle);
+H5_DLL herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, size_t size, void *buf/*out*/);
+H5_DLL herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id,
+ haddr_t addr, size_t size, const void *buf);
+H5_DLL herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, unsigned closing);
+H5_DLL herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing);
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/privatemodules/nc4/include/H5FDsec2.h b/privatemodules/nc4/include/H5FDsec2.h
new file mode 100644
index 0000000000000000000000000000000000000000..b7db0d5ea998e779c8ea2f47ef42789ebaa5b39d
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDsec2.h
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDsec2_H
+#define H5FDsec2_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_SEC2 (H5FD_sec2_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_sec2_init(void);
+H5_DLL void H5FD_sec2_term(void);
+H5_DLL herr_t H5Pset_fapl_sec2(hid_t fapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5FDstdio.h b/privatemodules/nc4/include/H5FDstdio.h
new file mode 100644
index 0000000000000000000000000000000000000000..80443d890165a4588df6b01e594309fc39bfe16c
--- /dev/null
+++ b/privatemodules/nc4/include/H5FDstdio.h
@@ -0,0 +1,41 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Robb Matzke <matzke@llnl.gov>
+ * Monday, August 2, 1999
+ *
+ * Purpose: The public header file for the sec2 driver.
+ */
+#ifndef H5FDstdio_H
+#define H5FDstdio_H
+
+#include "H5Ipublic.h"
+
+#define H5FD_STDIO (H5FD_stdio_init())
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5_DLL hid_t H5FD_stdio_init(void);
+H5_DLL void H5FD_stdio_term(void);
+H5_DLL herr_t H5Pset_fapl_stdio(hid_t fapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5Fpublic.h b/privatemodules/nc4/include/H5Fpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..8466a26aa6c28d9c309c70a4d0129b0af533254d
--- /dev/null
+++ b/privatemodules/nc4/include/H5Fpublic.h
@@ -0,0 +1,196 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5F module.
+ */
+#ifndef _H5Fpublic_H
+#define _H5Fpublic_H
+
+/* Public header files needed by this file */
+#include "H5public.h"
+#include "H5ACpublic.h"
+#include "H5Ipublic.h"
+
+/* When this header is included from a private header, don't make calls to H5check() */
+#undef H5CHECK
+#ifndef _H5private_H
+#define H5CHECK H5check(),
+#else /* _H5private_H */
+#define H5CHECK
+#endif /* _H5private_H */
+
+/*
+ * These are the bits that can be passed to the `flags' argument of
+ * H5Fcreate() and H5Fopen(). Use the bit-wise OR operator (|) to combine
+ * them as needed. As a side effect, they call H5check_version() to make sure
+ * that the application is compiled with a version of the hdf5 header files
+ * which are compatible with the library to which the application is linked.
+ * We're assuming that these constants are used rather early in the hdf5
+ * session.
+ *
+ */
+#define H5F_ACC_RDONLY (H5CHECK 0x0000u) /*absence of rdwr => rd-only */
+#define H5F_ACC_RDWR (H5CHECK 0x0001u) /*open for read and write */
+#define H5F_ACC_TRUNC (H5CHECK 0x0002u) /*overwrite existing files */
+#define H5F_ACC_EXCL (H5CHECK 0x0004u) /*fail if file already exists*/
+#define H5F_ACC_DEBUG (H5CHECK 0x0008u) /*print debug info */
+#define H5F_ACC_CREAT (H5CHECK 0x0010u) /*create non-existing files */
+
+/* Value passed to H5Pset_elink_acc_flags to cause flags to be taken from the
+ * parent file. */
+#define H5F_ACC_DEFAULT (H5CHECK 0xffffu) /*ignore setting on lapl */
+
+/* Flags for H5Fget_obj_count() & H5Fget_obj_ids() calls */
+#define H5F_OBJ_FILE (0x0001u) /* File objects */
+#define H5F_OBJ_DATASET (0x0002u) /* Dataset objects */
+#define H5F_OBJ_GROUP (0x0004u) /* Group objects */
+#define H5F_OBJ_DATATYPE (0x0008u) /* Named datatype objects */
+#define H5F_OBJ_ATTR (0x0010u) /* Attribute objects */
+#define H5F_OBJ_ALL (H5F_OBJ_FILE|H5F_OBJ_DATASET|H5F_OBJ_GROUP|H5F_OBJ_DATATYPE|H5F_OBJ_ATTR)
+#define H5F_OBJ_LOCAL (0x0020u) /* Restrict search to objects opened through current file ID */
+ /* (as opposed to objects opened through any file ID accessing this file) */
+
+#define H5F_FAMILY_DEFAULT (hsize_t)0
+
+#ifdef H5_HAVE_PARALLEL
+/*
+ * Use this constant string as the MPI_Info key to set H5Fmpio debug flags.
+ * To turn on H5Fmpio debug flags, set the MPI_Info value with this key to
+ * have the value of a string consisting of the characters that turn on the
+ * desired flags.
+ */
+#define H5F_MPIO_DEBUG_KEY "H5F_mpio_debug_key"
+#endif /* H5_HAVE_PARALLEL */
+
+/* The difference between a single file and a set of mounted files */
+typedef enum H5F_scope_t {
+ H5F_SCOPE_LOCAL = 0, /*specified file handle only */
+ H5F_SCOPE_GLOBAL = 1 /*entire virtual file */
+} H5F_scope_t;
+
+/* Unlimited file size for H5Pset_external() */
+#define H5F_UNLIMITED ((hsize_t)(-1L))
+
+/* How does file close behave?
+ * H5F_CLOSE_DEFAULT - Use the degree pre-defined by underlining VFL
+ * H5F_CLOSE_WEAK - file closes only after all opened objects are closed
+ * H5F_CLOSE_SEMI - if no opened objects, file is close; otherwise, file
+ close fails
+ * H5F_CLOSE_STRONG - if there are opened objects, close them first, then
+ close file
+ */
+typedef enum H5F_close_degree_t {
+ H5F_CLOSE_DEFAULT = 0,
+ H5F_CLOSE_WEAK = 1,
+ H5F_CLOSE_SEMI = 2,
+ H5F_CLOSE_STRONG = 3
+} H5F_close_degree_t;
+
+/* Current "global" information about file */
+/* (just size info currently) */
+typedef struct H5F_info_t {
+ hsize_t super_ext_size; /* Superblock extension size */
+ struct {
+ hsize_t hdr_size; /* Shared object header message header size */
+ H5_ih_info_t msgs_info; /* Shared object header message index & heap size */
+ } sohm;
+} H5F_info_t;
+
+/*
+ * Types of allocation requests. The values larger than H5FD_MEM_DEFAULT
+ * should not change other than adding new types to the end. These numbers
+ * might appear in files.
+ *
+ * Note: please change the log VFD flavors array if you change this
+ * enumeration.
+ */
+typedef enum H5F_mem_t {
+ H5FD_MEM_NOLIST = -1, /* Data should not appear in the free list.
+ * Must be negative.
+ */
+ H5FD_MEM_DEFAULT = 0, /* Value not yet set. Can also be the
+ * datatype set in a larger allocation
+ * that will be suballocated by the library.
+ * Must be zero.
+ */
+ H5FD_MEM_SUPER = 1, /* Superblock data */
+ H5FD_MEM_BTREE = 2, /* B-tree data */
+ H5FD_MEM_DRAW = 3, /* Raw data (content of datasets, etc.) */
+ H5FD_MEM_GHEAP = 4, /* Global heap data */
+ H5FD_MEM_LHEAP = 5, /* Local heap data */
+ H5FD_MEM_OHDR = 6, /* Object header data */
+
+ H5FD_MEM_NTYPES /* Sentinel value - must be last */
+} H5F_mem_t;
+
+/* Library's file format versions */
+typedef enum H5F_libver_t {
+ H5F_LIBVER_EARLIEST, /* Use the earliest possible format for storing objects */
+ H5F_LIBVER_LATEST /* Use the latest possible format available for storing objects*/
+} H5F_libver_t;
+
+/* Define file format version for 1.8 to prepare for 1.10 release.
+ * (Not used anywhere now)*/
+#define H5F_LIBVER_18 H5F_LIBVER_LATEST
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5F.c */
+H5_DLL htri_t H5Fis_hdf5(const char *filename);
+H5_DLL hid_t H5Fcreate(const char *filename, unsigned flags,
+ hid_t create_plist, hid_t access_plist);
+H5_DLL hid_t H5Fopen(const char *filename, unsigned flags,
+ hid_t access_plist);
+H5_DLL hid_t H5Freopen(hid_t file_id);
+H5_DLL herr_t H5Fflush(hid_t object_id, H5F_scope_t scope);
+H5_DLL herr_t H5Fclose(hid_t file_id);
+H5_DLL hid_t H5Fget_create_plist(hid_t file_id);
+H5_DLL hid_t H5Fget_access_plist(hid_t file_id);
+H5_DLL herr_t H5Fget_intent(hid_t file_id, unsigned * intent);
+H5_DLL ssize_t H5Fget_obj_count(hid_t file_id, unsigned types);
+H5_DLL ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list);
+H5_DLL herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle);
+H5_DLL herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist);
+H5_DLL herr_t H5Funmount(hid_t loc, const char *name);
+H5_DLL hssize_t H5Fget_freespace(hid_t file_id);
+H5_DLL herr_t H5Fget_filesize(hid_t file_id, hsize_t *size);
+H5_DLL ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len);
+H5_DLL herr_t H5Fget_mdc_config(hid_t file_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Fset_mdc_config(hid_t file_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr);
+H5_DLL herr_t H5Fget_mdc_size(hid_t file_id,
+ size_t * max_size_ptr,
+ size_t * min_clean_size_ptr,
+ size_t * cur_size_ptr,
+ int * cur_num_entries_ptr);
+H5_DLL herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id);
+H5_DLL ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size);
+H5_DLL herr_t H5Fget_info(hid_t obj_id, H5F_info_t *bh_info);
+H5_DLL herr_t H5Fclear_elink_file_cache(hid_t file_id);
+#ifdef H5_HAVE_PARALLEL
+H5_DLL herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag);
+H5_DLL herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag);
+#endif /* H5_HAVE_PARALLEL */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Fpublic_H */
+
diff --git a/privatemodules/nc4/include/H5Gpublic.h b/privatemodules/nc4/include/H5Gpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..5b8b05478a5bdf36df8efbf507ec55b6b03fc589
--- /dev/null
+++ b/privatemodules/nc4/include/H5Gpublic.h
@@ -0,0 +1,178 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Gpublic.h
+ * Jul 11 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5G package
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Gpublic_H
+#define _H5Gpublic_H
+
+/* System headers needed by this file */
+#include <sys/types.h>
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Lpublic.h" /* Links */
+#include "H5Opublic.h" /* Object headers */
+#include "H5Tpublic.h" /* Datatypes */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Types of link storage for groups */
+typedef enum H5G_storage_type_t {
+ H5G_STORAGE_TYPE_UNKNOWN = -1, /* Unknown link storage type */
+ H5G_STORAGE_TYPE_SYMBOL_TABLE, /* Links in group are stored with a "symbol table" */
+ /* (this is sometimes called "old-style" groups) */
+ H5G_STORAGE_TYPE_COMPACT, /* Links are stored in object header */
+ H5G_STORAGE_TYPE_DENSE /* Links are stored in fractal heap & indexed with v2 B-tree */
+} H5G_storage_type_t;
+
+/* Information struct for group (for H5Gget_info/H5Gget_info_by_name/H5Gget_info_by_idx) */
+typedef struct H5G_info_t {
+ H5G_storage_type_t storage_type; /* Type of storage for links in group */
+ hsize_t nlinks; /* Number of links in group */
+ int64_t max_corder; /* Current max. creation order value for group */
+ hbool_t mounted; /* Whether group has a file mounted on it */
+} H5G_info_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id,
+ hid_t gcpl_id, hid_t gapl_id);
+H5_DLL hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id);
+H5_DLL hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id);
+H5_DLL hid_t H5Gget_create_plist(hid_t group_id);
+H5_DLL herr_t H5Gget_info(hid_t loc_id, H5G_info_t *ginfo);
+H5_DLL herr_t H5Gget_info_by_name(hid_t loc_id, const char *name, H5G_info_t *ginfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Gget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *ginfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Gclose(hid_t group_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* Link definitions */
+#define H5G_SAME_LOC H5L_SAME_LOC
+#define H5G_LINK_ERROR H5L_TYPE_ERROR
+#define H5G_LINK_HARD H5L_TYPE_HARD
+#define H5G_LINK_SOFT H5L_TYPE_SOFT
+#define H5G_link_t H5L_type_t
+
+/* Macros for types of objects in a group (see H5G_obj_t definition) */
+#define H5G_NTYPES 256 /* Max possible number of types */
+#define H5G_NLIBTYPES 8 /* Number of internal types */
+#define H5G_NUSERTYPES (H5G_NTYPES - H5G_NLIBTYPES)
+#define H5G_USERTYPE(X) (8 + (X)) /* User defined types */
+
+
+/* Typedefs */
+
+/*
+ * An object has a certain type. The first few numbers are reserved for use
+ * internally by HDF5. Users may add their own types with higher values. The
+ * values are never stored in the file -- they only exist while an
+ * application is running. An object may satisfy the `isa' function for more
+ * than one type.
+ */
+typedef enum H5G_obj_t {
+ H5G_UNKNOWN = -1, /* Unknown object type */
+ H5G_GROUP, /* Object is a group */
+ H5G_DATASET, /* Object is a dataset */
+ H5G_TYPE, /* Object is a named data type */
+ H5G_LINK, /* Object is a symbolic link */
+ H5G_UDLINK, /* Object is a user-defined link */
+ H5G_RESERVED_5, /* Reserved for future use */
+ H5G_RESERVED_6, /* Reserved for future use */
+ H5G_RESERVED_7 /* Reserved for future use */
+} H5G_obj_t;
+
+/* Prototype for H5Giterate() operator */
+typedef herr_t (*H5G_iterate_t)(hid_t group, const char *name, void *op_data);
+
+/* Information about an object */
+typedef struct H5G_stat_t {
+ unsigned long fileno[2]; /*file number */
+ unsigned long objno[2]; /*object number */
+ unsigned nlink; /*number of hard links to object*/
+ H5G_obj_t type; /*basic object type */
+ time_t mtime; /*modification time */
+ size_t linklen; /*symbolic link value length */
+ H5O_stat_t ohdr; /* Object header information */
+} H5G_stat_t;
+
+
+/* Function prototypes */
+H5_DLL hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint);
+H5_DLL hid_t H5Gopen1(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Glink(hid_t cur_loc_id, H5G_link_t type, const char *cur_name,
+ const char *new_name);
+H5_DLL herr_t H5Glink2(hid_t cur_loc_id, const char *cur_name, H5G_link_t type,
+ hid_t new_loc_id, const char *new_name);
+H5_DLL herr_t H5Gmove(hid_t src_loc_id, const char *src_name,
+ const char *dst_name);
+H5_DLL herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
+ const char *dst_name);
+H5_DLL herr_t H5Gunlink(hid_t loc_id, const char *name);
+H5_DLL herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size,
+ char *buf/*out*/);
+H5_DLL herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment);
+H5_DLL int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize,
+ char *buf);
+H5_DLL herr_t H5Giterate(hid_t loc_id, const char *name, int *idx,
+ H5G_iterate_t op, void *op_data);
+H5_DLL herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs);
+H5_DLL herr_t H5Gget_objinfo(hid_t loc_id, const char *name,
+ hbool_t follow_link, H5G_stat_t *statbuf/*out*/);
+H5_DLL ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char* name,
+ size_t size);
+H5_DLL H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Gpublic_H */
+
diff --git a/privatemodules/nc4/include/H5IMpublic.h b/privatemodules/nc4/include/H5IMpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..6833f02d6e437e1de15d0f1cfc846039974ba8a8
--- /dev/null
+++ b/privatemodules/nc4/include/H5IMpublic.h
@@ -0,0 +1,87 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5IMpublic_H
+#define _H5IMpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+
+H5_HLDLL herr_t H5IMmake_image_8bit( hid_t loc_id,
+ const char *dset_name,
+ hsize_t width,
+ hsize_t height,
+ const unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMmake_image_24bit( hid_t loc_id,
+ const char *dset_name,
+ hsize_t width,
+ hsize_t height,
+ const char *interlace,
+ const unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMget_image_info( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *width,
+ hsize_t *height,
+ hsize_t *planes,
+ char *interlace,
+ hssize_t *npals );
+
+H5_HLDLL herr_t H5IMread_image( hid_t loc_id,
+ const char *dset_name,
+ unsigned char *buffer );
+
+H5_HLDLL herr_t H5IMmake_palette( hid_t loc_id,
+ const char *pal_name,
+ const hsize_t *pal_dims,
+ const unsigned char *pal_data );
+
+H5_HLDLL herr_t H5IMlink_palette( hid_t loc_id,
+ const char *image_name,
+ const char *pal_name );
+
+H5_HLDLL herr_t H5IMunlink_palette( hid_t loc_id,
+ const char *image_name,
+ const char *pal_name );
+
+H5_HLDLL herr_t H5IMget_npalettes( hid_t loc_id,
+ const char *image_name,
+ hssize_t *npals );
+
+H5_HLDLL herr_t H5IMget_palette_info( hid_t loc_id,
+ const char *image_name,
+ int pal_number,
+ hsize_t *pal_dims );
+
+H5_HLDLL herr_t H5IMget_palette( hid_t loc_id,
+ const char *image_name,
+ int pal_number,
+ unsigned char *pal_data );
+
+H5_HLDLL herr_t H5IMis_image( hid_t loc_id,
+ const char *dset_name );
+
+H5_HLDLL herr_t H5IMis_palette( hid_t loc_id,
+ const char *dset_name );
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
diff --git a/privatemodules/nc4/include/H5Ipublic.h b/privatemodules/nc4/include/H5Ipublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..d6305564544b500bad7a510b717f16f1f322aad7
--- /dev/null
+++ b/privatemodules/nc4/include/H5Ipublic.h
@@ -0,0 +1,104 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains function prototypes for each exported function in
+ * the H5I module.
+ */
+#ifndef _H5Ipublic_H
+#define _H5Ipublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*
+ * Library type values. Start with `1' instead of `0' because it makes the
+ * tracing output look better when hid_t values are large numbers. Change the
+ * TYPE_BITS in H5I.c if the MAXID gets larger than 32 (an assertion will
+ * fail otherwise).
+ *
+ * When adding types here, add a section to the 'misc19' test in test/tmisc.c
+ * to verify that the H5I{inc|dec|get}_ref() routines work correctly with in.
+ *
+ */
+typedef enum H5I_type_t {
+ H5I_UNINIT = (-2), /*uninitialized type */
+ H5I_BADID = (-1), /*invalid Type */
+ H5I_FILE = 1, /*type ID for File objects */
+ H5I_GROUP, /*type ID for Group objects */
+ H5I_DATATYPE, /*type ID for Datatype objects */
+ H5I_DATASPACE, /*type ID for Dataspace objects */
+ H5I_DATASET, /*type ID for Dataset objects */
+ H5I_ATTR, /*type ID for Attribute objects */
+ H5I_REFERENCE, /*type ID for Reference objects */
+ H5I_VFL, /*type ID for virtual file layer */
+ H5I_GENPROP_CLS, /*type ID for generic property list classes */
+ H5I_GENPROP_LST, /*type ID for generic property lists */
+ H5I_ERROR_CLASS, /*type ID for error classes */
+ H5I_ERROR_MSG, /*type ID for error messages */
+ H5I_ERROR_STACK, /*type ID for error stacks */
+ H5I_NTYPES /*number of library types, MUST BE LAST! */
+} H5I_type_t;
+
+/* Type of atoms to return to users */
+typedef int hid_t;
+#define H5_SIZEOF_HID_T H5_SIZEOF_INT
+
+/* An invalid object ID. This is also negative for error return. */
+#define H5I_INVALID_HID (-1)
+
+/*
+ * Function for freeing objects. This function will be called with an object
+ * ID type number and a pointer to the object. The function should free the
+ * object and return non-negative to indicate that the object
+ * can be removed from the ID type. If the function returns negative
+ * (failure) then the object will remain in the ID type.
+ */
+typedef herr_t (*H5I_free_t)(void*);
+
+/* Type of the function to compare objects & keys */
+typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key);
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Public API functions */
+
+H5_DLL hid_t H5Iregister(H5I_type_t type, const void *object);
+H5_DLL void *H5Iobject_verify(hid_t id, H5I_type_t id_type);
+H5_DLL void *H5Iremove_verify(hid_t id, H5I_type_t id_type);
+H5_DLL H5I_type_t H5Iget_type(hid_t id);
+H5_DLL hid_t H5Iget_file_id(hid_t id);
+H5_DLL ssize_t H5Iget_name(hid_t id, char *name/*out*/, size_t size);
+H5_DLL int H5Iinc_ref(hid_t id);
+H5_DLL int H5Idec_ref(hid_t id);
+H5_DLL int H5Iget_ref(hid_t id);
+H5_DLL H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func);
+H5_DLL herr_t H5Iclear_type(H5I_type_t type, hbool_t force);
+H5_DLL herr_t H5Idestroy_type(H5I_type_t type);
+H5_DLL int H5Iinc_type_ref(H5I_type_t type);
+H5_DLL int H5Idec_type_ref(H5I_type_t type);
+H5_DLL int H5Iget_type_ref(H5I_type_t type);
+H5_DLL void *H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key);
+H5_DLL herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members);
+H5_DLL htri_t H5Itype_exists(H5I_type_t type);
+H5_DLL htri_t H5Iis_valid(hid_t id);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Ipublic_H */
+
diff --git a/privatemodules/nc4/include/H5LTpublic.h b/privatemodules/nc4/include/H5LTpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..929c6bdde4a4ed7ea3d3379546b2c6d1187cf548
--- /dev/null
+++ b/privatemodules/nc4/include/H5LTpublic.h
@@ -0,0 +1,370 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5LTpublic_H
+#define _H5LTpublic_H
+
+/* Flag definitions for H5LTopen_file_image() */
+#define H5LT_FILE_IMAGE_OPEN_RW 0x0001 /* Open image for read-write */
+#define H5LT_FILE_IMAGE_DONT_COPY 0x0002 /* The HDF5 lib won't copy */
+/* user supplied image buffer. The same image is open with the core driver. */
+#define H5LT_FILE_IMAGE_DONT_RELEASE 0x0004 /* The HDF5 lib won't */
+/* deallocate user supplied image buffer. The user application is reponsible */
+/* for doing so. */
+#define H5LT_FILE_IMAGE_ALL 0x0007
+
+typedef enum H5LT_lang_t {
+ H5LT_LANG_ERR = -1, /*this is the first*/
+ H5LT_DDL = 0, /*for DDL*/
+ H5LT_C = 1, /*for C*/
+ H5LT_FORTRAN = 2, /*for Fortran*/
+ H5LT_NO_LANG = 3 /*this is the last*/
+} H5LT_lang_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Make dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTmake_dataset( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ hid_t type_id,
+ const void *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_char( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const char *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_short( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const short *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_int( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const int *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_long( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const long *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_float( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const float *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_double( hid_t loc_id,
+ const char *dset_name,
+ int rank,
+ const hsize_t *dims,
+ const double *buffer );
+
+H5_HLDLL herr_t H5LTmake_dataset_string( hid_t loc_id,
+ const char *dset_name,
+ const char *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Read dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTread_dataset( hid_t loc_id,
+ const char *dset_name,
+ hid_t type_id,
+ void *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_char( hid_t loc_id,
+ const char *dset_name,
+ char *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_short( hid_t loc_id,
+ const char *dset_name,
+ short *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_int( hid_t loc_id,
+ const char *dset_name,
+ int *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_long( hid_t loc_id,
+ const char *dset_name,
+ long *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_float( hid_t loc_id,
+ const char *dset_name,
+ float *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_double( hid_t loc_id,
+ const char *dset_name,
+ double *buffer );
+
+H5_HLDLL herr_t H5LTread_dataset_string( hid_t loc_id,
+ const char *dset_name,
+ char *buf );
+
+/*-------------------------------------------------------------------------
+ *
+ * Query dataset functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTget_dataset_ndims( hid_t loc_id,
+ const char *dset_name,
+ int *rank );
+
+H5_HLDLL herr_t H5LTget_dataset_info( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *dims,
+ H5T_class_t *type_class,
+ size_t *type_size );
+
+H5_HLDLL herr_t H5LTfind_dataset( hid_t loc_id, const char *name );
+
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Set attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTset_attribute_string( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const char *attr_data );
+
+H5_HLDLL herr_t H5LTset_attribute_char( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const char *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_uchar( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned char *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_short( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const short *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_ushort( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned short *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_int( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const int *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_uint( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned int *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_long_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const long long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_ulong( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const unsigned long *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_float( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const float *buffer,
+ size_t size );
+
+H5_HLDLL herr_t H5LTset_attribute_double( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ const double *buffer,
+ size_t size );
+
+/*-------------------------------------------------------------------------
+ *
+ * Get attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTget_attribute( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ hid_t mem_type_id,
+ void *data );
+
+H5_HLDLL herr_t H5LTget_attribute_string( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_char( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_uchar( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned char *data );
+
+H5_HLDLL herr_t H5LTget_attribute_short( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ short *data );
+
+H5_HLDLL herr_t H5LTget_attribute_ushort( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned short *data );
+
+H5_HLDLL herr_t H5LTget_attribute_int( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ int *data );
+
+H5_HLDLL herr_t H5LTget_attribute_uint( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned int *data );
+
+H5_HLDLL herr_t H5LTget_attribute_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_long_long( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ long long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_ulong( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ unsigned long *data );
+
+H5_HLDLL herr_t H5LTget_attribute_float( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ float *data );
+
+H5_HLDLL herr_t H5LTget_attribute_double( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ double *data );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Query attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5LTget_attribute_ndims( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ int *rank );
+
+H5_HLDLL herr_t H5LTget_attribute_info( hid_t loc_id,
+ const char *obj_name,
+ const char *attr_name,
+ hsize_t *dims,
+ H5T_class_t *type_class,
+ size_t *type_size );
+
+
+
+
+
+/*-------------------------------------------------------------------------
+ *
+ * General functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5LTtext_to_dtype(const char *text, H5LT_lang_t lang_type);
+H5_HLDLL herr_t H5LTdtype_to_text(hid_t dtype, char *str, H5LT_lang_t lang_type, size_t *len);
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Utility functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5LTfind_attribute( hid_t loc_id, const char *name );
+
+H5_HLDLL htri_t H5LTpath_valid(hid_t loc_id, const char *path, hbool_t check_object_valid);
+
+/*-------------------------------------------------------------------------
+ *
+ * File image operations functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5LTopen_file_image(void *buf_ptr, size_t buf_size, unsigned flags);
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5Lpublic.h b/privatemodules/nc4/include/H5Lpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..620d2e9b00cd40ee07a09c729eaf3b379ee00929
--- /dev/null
+++ b/privatemodules/nc4/include/H5Lpublic.h
@@ -0,0 +1,202 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Lpublic.h
+ * Dec 1 2005
+ * James Laird
+ *
+ * Purpose: Public declarations for the H5L package (links)
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Lpublic_H
+#define _H5Lpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Tpublic.h" /* Datatypes */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Maximum length of a link's name */
+/* (encoded in a 32-bit unsigned integer) */
+#define H5L_MAX_LINK_NAME_LEN ((uint32_t)(-1)) /* (4GB - 1) */
+
+/* Macro to indicate operation occurs on same location */
+#define H5L_SAME_LOC 0
+
+/* Current version of the H5L_class_t struct */
+#define H5L_LINK_CLASS_T_VERS 0
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Link class types.
+ * Values less than 64 are reserved for the HDF5 library's internal use.
+ * Values 64 to 255 are for "user-defined" link class types; these types are
+ * defined by HDF5 but their behavior can be overridden by users.
+ * Users who want to create new classes of links should contact the HDF5
+ * development team at hdfhelp@ncsa.uiuc.edu .
+ * These values can never change because they appear in HDF5 files.
+ */
+typedef enum {
+ H5L_TYPE_ERROR = (-1), /* Invalid link type id */
+ H5L_TYPE_HARD = 0, /* Hard link id */
+ H5L_TYPE_SOFT = 1, /* Soft link id */
+ H5L_TYPE_EXTERNAL = 64, /* External link id */
+ H5L_TYPE_MAX = 255 /* Maximum link type id */
+} H5L_type_t;
+#define H5L_TYPE_BUILTIN_MAX H5L_TYPE_SOFT /* Maximum value link value for "built-in" link types */
+#define H5L_TYPE_UD_MIN H5L_TYPE_EXTERNAL /* Link ids at or above this value are "user-defined" link types. */
+
+/* Information struct for link (for H5Lget_info/H5Lget_info_by_idx) */
+typedef struct {
+ H5L_type_t type; /* Type of link */
+ hbool_t corder_valid; /* Indicate if creation order is valid */
+ int64_t corder; /* Creation order */
+ H5T_cset_t cset; /* Character set of link name */
+ union {
+ haddr_t address; /* Address hard link points to */
+ size_t val_size; /* Size of a soft link or UD link value */
+ } u;
+} H5L_info_t;
+
+/* The H5L_class_t struct can be used to override the behavior of a
+ * "user-defined" link class. Users should populate the struct with callback
+ * functions defined below.
+ */
+/* Callback prototypes for user-defined links */
+/* Link creation callback */
+typedef herr_t (*H5L_create_func_t)(const char *link_name, hid_t loc_group,
+ const void *lnkdata, size_t lnkdata_size, hid_t lcpl_id);
+
+/* Callback for when the link is moved */
+typedef herr_t (*H5L_move_func_t)(const char *new_name, hid_t new_loc,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback for when the link is copied */
+typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback during link traversal */
+typedef herr_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group,
+ const void *lnkdata, size_t lnkdata_size, hid_t lapl_id);
+
+/* Callback for when the link is deleted */
+typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file,
+ const void *lnkdata, size_t lnkdata_size);
+
+/* Callback for querying the link */
+/* Returns the size of the buffer needed */
+typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata,
+ size_t lnkdata_size, void *buf /*out*/, size_t buf_size);
+
+/* User-defined link types */
+typedef struct {
+ int version; /* Version number of this struct */
+ H5L_type_t id; /* Link type ID */
+ const char *comment; /* Comment for debugging */
+ H5L_create_func_t create_func; /* Callback during link creation */
+ H5L_move_func_t move_func; /* Callback after moving link */
+ H5L_copy_func_t copy_func; /* Callback after copying link */
+ H5L_traverse_func_t trav_func; /* Callback during link traversal */
+ H5L_delete_func_t del_func; /* Callback for link deletion */
+ H5L_query_func_t query_func; /* Callback for queries */
+} H5L_class_t;
+
+/* Prototype for H5Literate/H5Literate_by_name() operator */
+typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info,
+ void *op_data);
+
+/* Callback for external link traversal */
+typedef herr_t (*H5L_elink_traverse_t)(const char *parent_file_name,
+ const char *parent_group_name, const char *child_file_name,
+ const char *child_object_name, unsigned *acc_flags, hid_t fapl_id,
+ void *op_data);
+
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL herr_t H5Lmove(hid_t src_loc, const char *src_name, hid_t dst_loc,
+ const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcopy(hid_t src_loc, const char *src_name, hid_t dst_loc,
+ const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcreate_hard(hid_t cur_loc, const char *cur_name,
+ hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id,
+ const char *link_name, hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf/*out*/,
+ size_t size, hid_t lapl_id);
+H5_DLL herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ void *buf/*out*/, size_t size, hid_t lapl_id);
+H5_DLL htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Lget_info(hid_t loc_id, const char *name,
+ H5L_info_t *linfo /*out*/, hid_t lapl_id);
+H5_DLL herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ H5L_info_t *linfo /*out*/, hid_t lapl_id);
+H5_DLL ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
+ char *name /*out*/, size_t size, hid_t lapl_id);
+H5_DLL herr_t H5Literate(hid_t grp_id, H5_index_t idx_type,
+ H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data);
+H5_DLL herr_t H5Literate_by_name(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx,
+ H5L_iterate_t op, void *op_data, hid_t lapl_id);
+H5_DLL herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order,
+ H5L_iterate_t op, void *op_data);
+H5_DLL herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op,
+ void *op_data, hid_t lapl_id);
+
+/* UD link functions */
+H5_DLL herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name,
+ H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id,
+ hid_t lapl_id);
+H5_DLL herr_t H5Lregister(const H5L_class_t *cls);
+H5_DLL herr_t H5Lunregister(H5L_type_t id);
+H5_DLL htri_t H5Lis_registered(H5L_type_t id);
+
+/* External link functions */
+H5_DLL herr_t H5Lunpack_elink_val(const void *ext_linkval/*in*/, size_t link_size,
+ unsigned *flags, const char **filename/*out*/, const char **obj_path /*out*/);
+H5_DLL herr_t H5Lcreate_external(const char *file_name, const char *obj_name,
+ hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Lpublic_H */
+
diff --git a/privatemodules/nc4/include/H5MMpublic.h b/privatemodules/nc4/include/H5MMpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..bfcb8073bbc0755b7e9dd557bd76b35bc5d0cf24
--- /dev/null
+++ b/privatemodules/nc4/include/H5MMpublic.h
@@ -0,0 +1,47 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5MMproto.h
+ * Jul 10 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5MM (memory management)
+ * package.
+ *
+ * Modifications:
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5MMpublic_H
+#define _H5MMpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/* These typedefs are currently used for VL datatype allocation/freeing */
+typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info);
+typedef void (*H5MM_free_t)(void *mem, void *free_info);
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5MMpublic_H */
+
diff --git a/privatemodules/nc4/include/H5Opublic.h b/privatemodules/nc4/include/H5Opublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..32945e845ae81d3b7dae8fee424c250b1980ce7c
--- /dev/null
+++ b/privatemodules/nc4/include/H5Opublic.h
@@ -0,0 +1,212 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*-------------------------------------------------------------------------
+ *
+ * Created: H5Opublic.h
+ * Aug 5 1997
+ * Robb Matzke <matzke@llnl.gov>
+ *
+ * Purpose: Public declarations for the H5O (object header)
+ * package.
+ *
+ *-------------------------------------------------------------------------
+ */
+#ifndef _H5Opublic_H
+#define _H5Opublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h" /* Generic Functions */
+#include "H5Ipublic.h" /* IDs */
+#include "H5Lpublic.h" /* Links */
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* Flags for object copy (H5Ocopy) */
+#define H5O_COPY_SHALLOW_HIERARCHY_FLAG (0x0001u) /* Copy only immediate members */
+#define H5O_COPY_EXPAND_SOFT_LINK_FLAG (0x0002u) /* Expand soft links into new objects */
+#define H5O_COPY_EXPAND_EXT_LINK_FLAG (0x0004u) /* Expand external links into new objects */
+#define H5O_COPY_EXPAND_REFERENCE_FLAG (0x0008u) /* Copy objects that are pointed by references */
+#define H5O_COPY_WITHOUT_ATTR_FLAG (0x0010u) /* Copy object without copying attributes */
+#define H5O_COPY_PRESERVE_NULL_FLAG (0x0020u) /* Copy NULL messages (empty space) */
+#define H5O_COPY_MERGE_COMMITTED_DTYPE_FLAG (0x0040u) /* Merge committed datatypes in dest file */
+#define H5O_COPY_ALL (0x007Fu) /* All object copying flags (for internal checking) */
+
+/* Flags for shared message indexes.
+ * Pass these flags in using the mesg_type_flags parameter in
+ * H5P_set_shared_mesg_index.
+ * (Developers: These flags correspond to object header message type IDs,
+ * but we need to assign each kind of message to a different bit so that
+ * one index can hold multiple types.)
+ */
+#define H5O_SHMESG_NONE_FLAG 0x0000 /* No shared messages */
+#define H5O_SHMESG_SDSPACE_FLAG ((unsigned)1 << 0x0001) /* Simple Dataspace Message. */
+#define H5O_SHMESG_DTYPE_FLAG ((unsigned)1 << 0x0003) /* Datatype Message. */
+#define H5O_SHMESG_FILL_FLAG ((unsigned)1 << 0x0005) /* Fill Value Message. */
+#define H5O_SHMESG_PLINE_FLAG ((unsigned)1 << 0x000b) /* Filter pipeline message. */
+#define H5O_SHMESG_ATTR_FLAG ((unsigned)1 << 0x000c) /* Attribute Message. */
+#define H5O_SHMESG_ALL_FLAG (H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_FILL_FLAG | H5O_SHMESG_PLINE_FLAG | H5O_SHMESG_ATTR_FLAG)
+
+/* Object header status flag definitions */
+#define H5O_HDR_CHUNK0_SIZE 0x03 /* 2-bit field indicating # of bytes to store the size of chunk 0's data */
+#define H5O_HDR_ATTR_CRT_ORDER_TRACKED 0x04 /* Attribute creation order is tracked */
+#define H5O_HDR_ATTR_CRT_ORDER_INDEXED 0x08 /* Attribute creation order has index */
+#define H5O_HDR_ATTR_STORE_PHASE_CHANGE 0x10 /* Non-default attribute storage phase change values stored */
+#define H5O_HDR_STORE_TIMES 0x20 /* Store access, modification, change & birth times for object */
+#define H5O_HDR_ALL_FLAGS (H5O_HDR_CHUNK0_SIZE | H5O_HDR_ATTR_CRT_ORDER_TRACKED | H5O_HDR_ATTR_CRT_ORDER_INDEXED | H5O_HDR_ATTR_STORE_PHASE_CHANGE | H5O_HDR_STORE_TIMES)
+
+/* Maximum shared message values. Number of indexes is 8 to allow room to add
+ * new types of messages.
+ */
+#define H5O_SHMESG_MAX_NINDEXES 8
+#define H5O_SHMESG_MAX_LIST_SIZE 5000
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Types of objects in file */
+typedef enum H5O_type_t {
+ H5O_TYPE_UNKNOWN = -1, /* Unknown object type */
+ H5O_TYPE_GROUP, /* Object is a group */
+ H5O_TYPE_DATASET, /* Object is a dataset */
+ H5O_TYPE_NAMED_DATATYPE, /* Object is a named data type */
+ H5O_TYPE_NTYPES /* Number of different object types (must be last!) */
+} H5O_type_t;
+
+/* Information struct for object header metadata (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */
+typedef struct H5O_hdr_info_t {
+ unsigned version; /* Version number of header format in file */
+ unsigned nmesgs; /* Number of object header messages */
+ unsigned nchunks; /* Number of object header chunks */
+ unsigned flags; /* Object header status flags */
+ struct {
+ hsize_t total; /* Total space for storing object header in file */
+ hsize_t meta; /* Space within header for object header metadata information */
+ hsize_t mesg; /* Space within header for actual message information */
+ hsize_t free; /* Free space within object header */
+ } space;
+ struct {
+ uint64_t present; /* Flags to indicate presence of message type in header */
+ uint64_t shared; /* Flags to indicate message type is shared in header */
+ } mesg;
+} H5O_hdr_info_t;
+
+/* Information struct for object (for H5Oget_info/H5Oget_info_by_name/H5Oget_info_by_idx) */
+typedef struct H5O_info_t {
+ unsigned long fileno; /* File number that object is located in */
+ haddr_t addr; /* Object address in file */
+ H5O_type_t type; /* Basic object type (group, dataset, etc.) */
+ unsigned rc; /* Reference count of object */
+ time_t atime; /* Access time */
+ time_t mtime; /* Modification time */
+ time_t ctime; /* Change time */
+ time_t btime; /* Birth time */
+ hsize_t num_attrs; /* # of attributes attached to object */
+ H5O_hdr_info_t hdr; /* Object header information */
+ /* Extra metadata storage for obj & attributes */
+ struct {
+ H5_ih_info_t obj; /* v1/v2 B-tree & local/fractal heap for groups, B-tree for chunked datasets */
+ H5_ih_info_t attr; /* v2 B-tree & heap for attributes */
+ } meta_size;
+} H5O_info_t;
+
+/* Typedef for message creation indexes */
+typedef uint32_t H5O_msg_crt_idx_t;
+
+/* Prototype for H5Ovisit/H5Ovisit_by_name() operator */
+typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info,
+ void *op_data);
+
+typedef enum H5O_mcdt_search_ret_t {
+ H5O_MCDT_SEARCH_ERROR = -1, /* Abort H5Ocopy */
+ H5O_MCDT_SEARCH_CONT, /* Continue the global search of all committed datatypes in the destination file */
+ H5O_MCDT_SEARCH_STOP /* Stop the search, but continue copying. The committed datatype will be copied but not merged. */
+} H5O_mcdt_search_ret_t;
+
+/* Callback to invoke when completing the search for a matching committed datatype from the committed dtype list */
+typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data);
+
+/********************/
+/* Public Variables */
+/********************/
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+H5_DLL hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr);
+H5_DLL hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id);
+H5_DLL htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id);
+H5_DLL herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo);
+H5_DLL herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name,
+ H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo,
+ hid_t lapl_id);
+H5_DLL herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name,
+ hid_t lcpl_id, hid_t lapl_id);
+H5_DLL herr_t H5Oincr_refcount(hid_t object_id);
+H5_DLL herr_t H5Odecr_refcount(hid_t object_id);
+H5_DLL herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
+ const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id);
+H5_DLL herr_t H5Oset_comment(hid_t obj_id, const char *comment);
+H5_DLL herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name,
+ const char *comment, hid_t lapl_id);
+H5_DLL ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize);
+H5_DLL ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name,
+ char *comment, size_t bufsize, hid_t lapl_id);
+H5_DLL herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order,
+ H5O_iterate_t op, void *op_data);
+H5_DLL herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name,
+ H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op,
+ void *op_data, hid_t lapl_id);
+H5_DLL herr_t H5Oclose(hid_t object_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* Typedefs */
+
+/* A struct that's part of the H5G_stat_t routine (deprecated) */
+typedef struct H5O_stat_t {
+ hsize_t size; /* Total size of object header in file */
+ hsize_t free; /* Free space within object header */
+ unsigned nmesgs; /* Number of object header messages */
+ unsigned nchunks; /* Number of object header chunks */
+} H5O_stat_t;
+
+/* Function prototypes */
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Opublic_H */
+
diff --git a/privatemodules/nc4/include/H5PLextern.h b/privatemodules/nc4/include/H5PLextern.h
new file mode 100644
index 0000000000000000000000000000000000000000..f94101d818a1cda5e73635651f6c5c98f5ccaff8
--- /dev/null
+++ b/privatemodules/nc4/include/H5PLextern.h
@@ -0,0 +1,87 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic document set and is *
+ * linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have access *
+ * to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Programmer: Raymond Lu <songyulu@hdfgroup.org>
+ * 13 February 2013
+ */
+#ifndef _H5PLextern_H
+#define _H5PLextern_H
+
+/* Include HDF5 header */
+#include "hdf5.h"
+
+#ifndef H5_VMS
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+/* Plugin type */
+typedef enum H5PL_type_t {
+ H5PL_TYPE_ERROR = -1, /*error */
+ H5PL_TYPE_FILTER = 0, /*filter */
+ H5PL_TYPE_NONE = 1 /*this must be last! */
+} H5PL_type_t;
+
+
+#ifdef H5_BUILT_AS_DYNAMIC_LIB
+
+ #if defined (hdf5_EXPORTS)
+ /* hdf5 library imports from plugin */
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5PLUGIN_DLL __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5PLUGIN_DLL __attribute__ ((visibility("default")))
+ #endif
+ #else
+ /* plugins always export */
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5PLUGIN_DLL __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5PLUGIN_DLL __attribute__ ((visibility("default")))
+ #endif
+ #endif
+
+#elif defined(H5_BUILT_AS_STATIC_LIB)
+ #define H5PLUGIN_DLL
+#else
+
+ #if defined(H5_HAVE_WIN32_API)
+ #if defined(_HDF5DLL_)
+ #pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+ #define H5PLUGIN_DLL __declspec(dllimport)
+ #elif defined(_HDF5USEDLL_)
+ #define H5PLUGIN_DLL __declspec(dllexport)
+ #endif /* _HDF5DLL_ */
+ #else /*H5_HAVE_WIN32_API*/
+ #define H5PLUGIN_DLL
+ #endif /*H5_HAVE_WIN32_API*/
+
+#endif /* H5_BUILT_AS_xxx_LIB */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+H5PLUGIN_DLL H5PL_type_t H5PLget_plugin_type(void);
+H5PLUGIN_DLL const void *H5PLget_plugin_info(void);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /*H5_VMS*/
+
+#endif /* _H5PLextern_H */
+
diff --git a/privatemodules/nc4/include/H5PTpublic.h b/privatemodules/nc4/include/H5PTpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..f919010591917cb356bf08c99381368bc848d444
--- /dev/null
+++ b/privatemodules/nc4/include/H5PTpublic.h
@@ -0,0 +1,127 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5PTpublic_H
+#define _H5PTpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*-------------------------------------------------------------------------
+ *
+ * Create/Open/Close functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL hid_t H5PTcreate_fl ( hid_t loc_id,
+ const char *dset_name,
+ hid_t dtype_id,
+ hsize_t chunk_size,
+ int compression );
+
+#ifdef VLPT_REMOVED
+H5_HLDLL hid_t H5PTcreate_vl ( hid_t loc_id,
+ const char *dset_name,
+ hsize_t chunk_size );
+#endif /* VLPT_REMOVED */
+
+H5_HLDLL hid_t H5PTopen( hid_t loc_id,
+ const char *dset_name );
+
+H5_HLDLL herr_t H5PTclose( hid_t table_id );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Write functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5PTappend( hid_t table_id,
+ size_t nrecords,
+ const void * data );
+
+/*-------------------------------------------------------------------------
+ *
+ * Read functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5PTget_next( hid_t table_id,
+ size_t nrecords,
+ void * data );
+
+H5_HLDLL herr_t H5PTread_packets( hid_t table_id,
+ hsize_t start,
+ size_t nrecords,
+ void *data );
+
+/*-------------------------------------------------------------------------
+ *
+ * Inquiry functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5PTget_num_packets( hid_t table_id,
+ hsize_t *nrecords );
+
+H5_HLDLL herr_t H5PTis_valid( hid_t table_id );
+
+#ifdef VLPT_REMOVED
+H5_HLDLL herr_t H5PTis_varlen( hid_t table_id );
+#endif /* VLPT_REMOVED */
+
+/*-------------------------------------------------------------------------
+ *
+ * Packet Table "current index" functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5PTcreate_index( hid_t table_id );
+
+H5_HLDLL herr_t H5PTset_index( hid_t table_id,
+ hsize_t pt_index );
+
+H5_HLDLL herr_t H5PTget_index( hid_t table_id,
+ hsize_t *pt_index );
+
+/*-------------------------------------------------------------------------
+ *
+ * Memory Management functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#ifdef VLPT_REMOVED
+H5_HLDLL herr_t H5PTfree_vlen_readbuff( hid_t table_id,
+ size_t bufflen,
+ void * buff );
+#endif /* VLPT_REMOVED */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5Ppublic.h b/privatemodules/nc4/include/H5Ppublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..1d8ced44c023d4c8b5ee6ddc1aa5af9e91b03667
--- /dev/null
+++ b/privatemodules/nc4/include/H5Ppublic.h
@@ -0,0 +1,495 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains function prototypes for each exported function in the
+ * H5P module.
+ */
+#ifndef _H5Ppublic_H
+#define _H5Ppublic_H
+
+/* System headers needed by this file */
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5ACpublic.h"
+#include "H5Dpublic.h"
+#include "H5Fpublic.h"
+#include "H5FDpublic.h"
+#include "H5Ipublic.h"
+#include "H5Lpublic.h"
+#include "H5Opublic.h"
+#include "H5MMpublic.h"
+#include "H5Tpublic.h"
+#include "H5Zpublic.h"
+
+
+/*****************/
+/* Public Macros */
+/*****************/
+
+/* When this header is included from a private HDF5 header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/*
+ * The library's property list classes
+ */
+
+#define H5P_ROOT (H5OPEN H5P_CLS_ROOT_g)
+#define H5P_OBJECT_CREATE (H5OPEN H5P_CLS_OBJECT_CREATE_g)
+#define H5P_FILE_CREATE (H5OPEN H5P_CLS_FILE_CREATE_g)
+#define H5P_FILE_ACCESS (H5OPEN H5P_CLS_FILE_ACCESS_g)
+#define H5P_DATASET_CREATE (H5OPEN H5P_CLS_DATASET_CREATE_g)
+#define H5P_DATASET_ACCESS (H5OPEN H5P_CLS_DATASET_ACCESS_g)
+#define H5P_DATASET_XFER (H5OPEN H5P_CLS_DATASET_XFER_g)
+#define H5P_FILE_MOUNT (H5OPEN H5P_CLS_FILE_MOUNT_g)
+#define H5P_GROUP_CREATE (H5OPEN H5P_CLS_GROUP_CREATE_g)
+#define H5P_GROUP_ACCESS (H5OPEN H5P_CLS_GROUP_ACCESS_g)
+#define H5P_DATATYPE_CREATE (H5OPEN H5P_CLS_DATATYPE_CREATE_g)
+#define H5P_DATATYPE_ACCESS (H5OPEN H5P_CLS_DATATYPE_ACCESS_g)
+#define H5P_STRING_CREATE (H5OPEN H5P_CLS_STRING_CREATE_g)
+#define H5P_ATTRIBUTE_CREATE (H5OPEN H5P_CLS_ATTRIBUTE_CREATE_g)
+#define H5P_OBJECT_COPY (H5OPEN H5P_CLS_OBJECT_COPY_g)
+#define H5P_LINK_CREATE (H5OPEN H5P_CLS_LINK_CREATE_g)
+#define H5P_LINK_ACCESS (H5OPEN H5P_CLS_LINK_ACCESS_g)
+
+/*
+ * The library's default property lists
+ */
+#define H5P_FILE_CREATE_DEFAULT (H5OPEN H5P_LST_FILE_CREATE_g)
+#define H5P_FILE_ACCESS_DEFAULT (H5OPEN H5P_LST_FILE_ACCESS_g)
+#define H5P_DATASET_CREATE_DEFAULT (H5OPEN H5P_LST_DATASET_CREATE_g)
+#define H5P_DATASET_ACCESS_DEFAULT (H5OPEN H5P_LST_DATASET_ACCESS_g)
+#define H5P_DATASET_XFER_DEFAULT (H5OPEN H5P_LST_DATASET_XFER_g)
+#define H5P_FILE_MOUNT_DEFAULT (H5OPEN H5P_LST_FILE_MOUNT_g)
+#define H5P_GROUP_CREATE_DEFAULT (H5OPEN H5P_LST_GROUP_CREATE_g)
+#define H5P_GROUP_ACCESS_DEFAULT (H5OPEN H5P_LST_GROUP_ACCESS_g)
+#define H5P_DATATYPE_CREATE_DEFAULT (H5OPEN H5P_LST_DATATYPE_CREATE_g)
+#define H5P_DATATYPE_ACCESS_DEFAULT (H5OPEN H5P_LST_DATATYPE_ACCESS_g)
+#define H5P_ATTRIBUTE_CREATE_DEFAULT (H5OPEN H5P_LST_ATTRIBUTE_CREATE_g)
+#define H5P_OBJECT_COPY_DEFAULT (H5OPEN H5P_LST_OBJECT_COPY_g)
+#define H5P_LINK_CREATE_DEFAULT (H5OPEN H5P_LST_LINK_CREATE_g)
+#define H5P_LINK_ACCESS_DEFAULT (H5OPEN H5P_LST_LINK_ACCESS_g)
+
+/* Common creation order flags (for links in groups and attributes on objects) */
+#define H5P_CRT_ORDER_TRACKED 0x0001
+#define H5P_CRT_ORDER_INDEXED 0x0002
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*******************/
+/* Public Typedefs */
+/*******************/
+
+
+/* Define property list class callback function pointer types */
+typedef herr_t (*H5P_cls_create_func_t)(hid_t prop_id, void *create_data);
+typedef herr_t (*H5P_cls_copy_func_t)(hid_t new_prop_id, hid_t old_prop_id,
+ void *copy_data);
+typedef herr_t (*H5P_cls_close_func_t)(hid_t prop_id, void *close_data);
+
+/* Define property list callback function pointer types */
+typedef herr_t (*H5P_prp_cb1_t)(const char *name, size_t size, void *value);
+typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, void *value);
+typedef H5P_prp_cb1_t H5P_prp_create_func_t;
+typedef H5P_prp_cb2_t H5P_prp_set_func_t;
+typedef H5P_prp_cb2_t H5P_prp_get_func_t;
+typedef H5P_prp_cb2_t H5P_prp_delete_func_t;
+typedef H5P_prp_cb1_t H5P_prp_copy_func_t;
+typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size);
+typedef H5P_prp_cb1_t H5P_prp_close_func_t;
+
+/* Define property list iteration function type */
+typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data);
+
+/* Actual IO mode property */
+typedef enum H5D_mpio_actual_chunk_opt_mode_t {
+ /* The default value, H5D_MPIO_NO_CHUNK_OPTIMIZATION, is used for all I/O
+ * operations that do not use chunk optimizations, including non-collective
+ * I/O and contiguous collective I/O.
+ */
+ H5D_MPIO_NO_CHUNK_OPTIMIZATION = 0,
+ H5D_MPIO_LINK_CHUNK,
+ H5D_MPIO_MULTI_CHUNK
+} H5D_mpio_actual_chunk_opt_mode_t;
+
+typedef enum H5D_mpio_actual_io_mode_t {
+ /* The following four values are conveniently defined as a bit field so that
+ * we can switch from the default to indpendent or collective and then to
+ * mixed without having to check the original value.
+ *
+ * NO_COLLECTIVE means that either collective I/O wasn't requested or that
+ * no I/O took place.
+ *
+ * CHUNK_INDEPENDENT means that collective I/O was requested, but the
+ * chunk optimization scheme chose independent I/O for each chunk.
+ */
+ H5D_MPIO_NO_COLLECTIVE = 0x0,
+ H5D_MPIO_CHUNK_INDEPENDENT = 0x1,
+ H5D_MPIO_CHUNK_COLLECTIVE = 0x2,
+ H5D_MPIO_CHUNK_MIXED = 0x1 | 0x2,
+
+ /* The contiguous case is separate from the bit field. */
+ H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4
+} H5D_mpio_actual_io_mode_t;
+
+/* Broken collective IO property */
+typedef enum H5D_mpio_no_collective_cause_t {
+ H5D_MPIO_COLLECTIVE = 0x00,
+ H5D_MPIO_SET_INDEPENDENT = 0x01,
+ H5D_MPIO_DATATYPE_CONVERSION = 0x02,
+ H5D_MPIO_DATA_TRANSFORMS = 0x04,
+ H5D_MPIO_MPI_OPT_TYPES_ENV_VAR_DISABLED = 0x08,
+ H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10,
+ H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x20,
+ H5D_MPIO_FILTERS = 0x40
+} H5D_mpio_no_collective_cause_t;
+
+/********************/
+/* Public Variables */
+/********************/
+
+/* Property list class IDs */
+/* (Internal to library, do not use! Use macros above) */
+H5_DLLVAR hid_t H5P_CLS_ROOT_g;
+H5_DLLVAR hid_t H5P_CLS_OBJECT_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATASET_XFER_g;
+H5_DLLVAR hid_t H5P_CLS_FILE_MOUNT_g;
+H5_DLLVAR hid_t H5P_CLS_GROUP_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_GROUP_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_DATATYPE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_DATATYPE_ACCESS_g;
+H5_DLLVAR hid_t H5P_CLS_STRING_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_ATTRIBUTE_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_OBJECT_COPY_g;
+H5_DLLVAR hid_t H5P_CLS_LINK_CREATE_g;
+H5_DLLVAR hid_t H5P_CLS_LINK_ACCESS_g;
+
+/* Default roperty list IDs */
+/* (Internal to library, do not use! Use macros above) */
+H5_DLLVAR hid_t H5P_LST_FILE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_FILE_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATASET_XFER_g;
+H5_DLLVAR hid_t H5P_LST_FILE_MOUNT_g;
+H5_DLLVAR hid_t H5P_LST_GROUP_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_GROUP_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_DATATYPE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_DATATYPE_ACCESS_g;
+H5_DLLVAR hid_t H5P_LST_ATTRIBUTE_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_OBJECT_COPY_g;
+H5_DLLVAR hid_t H5P_LST_LINK_CREATE_g;
+H5_DLLVAR hid_t H5P_LST_LINK_ACCESS_g;
+
+/*********************/
+/* Public Prototypes */
+/*********************/
+
+/* Generic property list routines */
+H5_DLL hid_t H5Pcreate_class(hid_t parent, const char *name,
+ H5P_cls_create_func_t cls_create, void *create_data,
+ H5P_cls_copy_func_t cls_copy, void *copy_data,
+ H5P_cls_close_func_t cls_close, void *close_data);
+H5_DLL char *H5Pget_class_name(hid_t pclass_id);
+H5_DLL hid_t H5Pcreate(hid_t cls_id);
+H5_DLL herr_t H5Pregister2(hid_t cls_id, const char *name, size_t size,
+ void *def_value, H5P_prp_create_func_t prp_create,
+ H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pinsert2(hid_t plist_id, const char *name, size_t size,
+ void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pset(hid_t plist_id, const char *name, void *value);
+H5_DLL htri_t H5Pexist(hid_t plist_id, const char *name);
+H5_DLL herr_t H5Pget_size(hid_t id, const char *name, size_t *size);
+H5_DLL herr_t H5Pget_nprops(hid_t id, size_t *nprops);
+H5_DLL hid_t H5Pget_class(hid_t plist_id);
+H5_DLL hid_t H5Pget_class_parent(hid_t pclass_id);
+H5_DLL herr_t H5Pget(hid_t plist_id, const char *name, void * value);
+H5_DLL htri_t H5Pequal(hid_t id1, hid_t id2);
+H5_DLL htri_t H5Pisa_class(hid_t plist_id, hid_t pclass_id);
+H5_DLL int H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func,
+ void *iter_data);
+H5_DLL herr_t H5Pcopy_prop(hid_t dst_id, hid_t src_id, const char *name);
+H5_DLL herr_t H5Premove(hid_t plist_id, const char *name);
+H5_DLL herr_t H5Punregister(hid_t pclass_id, const char *name);
+H5_DLL herr_t H5Pclose_class(hid_t plist_id);
+H5_DLL herr_t H5Pclose(hid_t plist_id);
+H5_DLL hid_t H5Pcopy(hid_t plist_id);
+
+/* Object creation property list (OCPL) routines */
+H5_DLL herr_t H5Pset_attr_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense);
+H5_DLL herr_t H5Pget_attr_phase_change(hid_t plist_id, unsigned *max_compact, unsigned *min_dense);
+H5_DLL herr_t H5Pset_attr_creation_order(hid_t plist_id, unsigned crt_order_flags);
+H5_DLL herr_t H5Pget_attr_creation_order(hid_t plist_id, unsigned *crt_order_flags);
+H5_DLL herr_t H5Pset_obj_track_times(hid_t plist_id, hbool_t track_times);
+H5_DLL herr_t H5Pget_obj_track_times(hid_t plist_id, hbool_t *track_times);
+H5_DLL herr_t H5Pmodify_filter(hid_t plist_id, H5Z_filter_t filter,
+ unsigned int flags, size_t cd_nelmts,
+ const unsigned int cd_values[/*cd_nelmts*/]);
+H5_DLL herr_t H5Pset_filter(hid_t plist_id, H5Z_filter_t filter,
+ unsigned int flags, size_t cd_nelmts,
+ const unsigned int c_values[]);
+H5_DLL int H5Pget_nfilters(hid_t plist_id);
+H5_DLL H5Z_filter_t H5Pget_filter2(hid_t plist_id, unsigned filter,
+ unsigned int *flags/*out*/,
+ size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/,
+ size_t namelen, char name[],
+ unsigned *filter_config /*out*/);
+H5_DLL herr_t H5Pget_filter_by_id2(hid_t plist_id, H5Z_filter_t id,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]/*out*/,
+ unsigned *filter_config/*out*/);
+H5_DLL htri_t H5Pall_filters_avail(hid_t plist_id);
+H5_DLL herr_t H5Premove_filter(hid_t plist_id, H5Z_filter_t filter);
+H5_DLL herr_t H5Pset_deflate(hid_t plist_id, unsigned aggression);
+H5_DLL herr_t H5Pset_fletcher32(hid_t plist_id);
+
+/* File creation property list (FCPL) routines */
+H5_DLL herr_t H5Pget_version(hid_t plist_id, unsigned *boot/*out*/,
+ unsigned *freelist/*out*/, unsigned *stab/*out*/,
+ unsigned *shhdr/*out*/);
+H5_DLL herr_t H5Pset_userblock(hid_t plist_id, hsize_t size);
+H5_DLL herr_t H5Pget_userblock(hid_t plist_id, hsize_t *size);
+H5_DLL herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr,
+ size_t sizeof_size);
+H5_DLL herr_t H5Pget_sizes(hid_t plist_id, size_t *sizeof_addr/*out*/,
+ size_t *sizeof_size/*out*/);
+H5_DLL herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk);
+H5_DLL herr_t H5Pget_sym_k(hid_t plist_id, unsigned *ik/*out*/, unsigned *lk/*out*/);
+H5_DLL herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik);
+H5_DLL herr_t H5Pget_istore_k(hid_t plist_id, unsigned *ik/*out*/);
+H5_DLL herr_t H5Pset_shared_mesg_nindexes(hid_t plist_id, unsigned nindexes);
+H5_DLL herr_t H5Pget_shared_mesg_nindexes(hid_t plist_id, unsigned *nindexes);
+H5_DLL herr_t H5Pset_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned mesg_type_flags, unsigned min_mesg_size);
+H5_DLL herr_t H5Pget_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned *mesg_type_flags, unsigned *min_mesg_size);
+H5_DLL herr_t H5Pset_shared_mesg_phase_change(hid_t plist_id, unsigned max_list, unsigned min_btree);
+H5_DLL herr_t H5Pget_shared_mesg_phase_change(hid_t plist_id, unsigned *max_list, unsigned *min_btree);
+
+/* File access property list (FAPL) routines */
+H5_DLL herr_t H5Pset_alignment(hid_t fapl_id, hsize_t threshold,
+ hsize_t alignment);
+H5_DLL herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold/*out*/,
+ hsize_t *alignment/*out*/);
+H5_DLL herr_t H5Pset_driver(hid_t plist_id, hid_t driver_id,
+ const void *driver_info);
+H5_DLL hid_t H5Pget_driver(hid_t plist_id);
+H5_DLL void *H5Pget_driver_info(hid_t plist_id);
+H5_DLL herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset);
+H5_DLL herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset);
+H5_DLL herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type);
+H5_DLL herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type);
+H5_DLL herr_t H5Pset_cache(hid_t plist_id, int mdc_nelmts,
+ size_t rdcc_nslots, size_t rdcc_nbytes,
+ double rdcc_w0);
+H5_DLL herr_t H5Pget_cache(hid_t plist_id,
+ int *mdc_nelmts, /* out */
+ size_t *rdcc_nslots/*out*/,
+ size_t *rdcc_nbytes/*out*/, double *rdcc_w0);
+H5_DLL herr_t H5Pset_mdc_config(hid_t plist_id,
+ H5AC_cache_config_t * config_ptr);
+H5_DLL herr_t H5Pget_mdc_config(hid_t plist_id,
+ H5AC_cache_config_t * config_ptr); /* out */
+H5_DLL herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref);
+H5_DLL herr_t H5Pget_gc_references(hid_t fapl_id, unsigned *gc_ref/*out*/);
+H5_DLL herr_t H5Pset_fclose_degree(hid_t fapl_id, H5F_close_degree_t degree);
+H5_DLL herr_t H5Pget_fclose_degree(hid_t fapl_id, H5F_close_degree_t *degree);
+H5_DLL herr_t H5Pset_meta_block_size(hid_t fapl_id, hsize_t size);
+H5_DLL herr_t H5Pget_meta_block_size(hid_t fapl_id, hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_sieve_buf_size(hid_t fapl_id, size_t size);
+H5_DLL herr_t H5Pget_sieve_buf_size(hid_t fapl_id, size_t *size/*out*/);
+H5_DLL herr_t H5Pset_small_data_block_size(hid_t fapl_id, hsize_t size);
+H5_DLL herr_t H5Pget_small_data_block_size(hid_t fapl_id, hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low,
+ H5F_libver_t high);
+H5_DLL herr_t H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low,
+ H5F_libver_t *high);
+H5_DLL herr_t H5Pset_elink_file_cache_size(hid_t plist_id, unsigned efc_size);
+H5_DLL herr_t H5Pget_elink_file_cache_size(hid_t plist_id, unsigned *efc_size);
+H5_DLL herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len);
+H5_DLL herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr);
+H5_DLL herr_t H5Pset_file_image_callbacks(hid_t fapl_id,
+ H5FD_file_image_callbacks_t *callbacks_ptr);
+H5_DLL herr_t H5Pget_file_image_callbacks(hid_t fapl_id,
+ H5FD_file_image_callbacks_t *callbacks_ptr);
+
+H5_DLL herr_t H5Pset_core_write_tracking(hid_t fapl_id, hbool_t is_enabled, size_t page_size);
+H5_DLL herr_t H5Pget_core_write_tracking(hid_t fapl_id, hbool_t *is_enabled, size_t *page_size);
+
+/* Dataset creation property list (DCPL) routines */
+H5_DLL herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout);
+H5_DLL H5D_layout_t H5Pget_layout(hid_t plist_id);
+H5_DLL herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[/*ndims*/]);
+H5_DLL int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[]/*out*/);
+H5_DLL herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset,
+ hsize_t size);
+H5_DLL int H5Pget_external_count(hid_t plist_id);
+H5_DLL herr_t H5Pget_external(hid_t plist_id, unsigned idx, size_t name_size,
+ char *name/*out*/, off_t *offset/*out*/,
+ hsize_t *size/*out*/);
+H5_DLL herr_t H5Pset_szip(hid_t plist_id, unsigned options_mask, unsigned pixels_per_block);
+H5_DLL herr_t H5Pset_shuffle(hid_t plist_id);
+H5_DLL herr_t H5Pset_nbit(hid_t plist_id);
+H5_DLL herr_t H5Pset_scaleoffset(hid_t plist_id, H5Z_SO_scale_type_t scale_type, int scale_factor);
+H5_DLL herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id,
+ const void *value);
+H5_DLL herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id,
+ void *value/*out*/);
+H5_DLL herr_t H5Pfill_value_defined(hid_t plist, H5D_fill_value_t *status);
+H5_DLL herr_t H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t
+ alloc_time);
+H5_DLL herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t
+ *alloc_time/*out*/);
+H5_DLL herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time);
+H5_DLL herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t
+ *fill_time/*out*/);
+
+/* Dataset access property list (DAPL) routines */
+H5_DLL herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots,
+ size_t rdcc_nbytes, double rdcc_w0);
+H5_DLL herr_t H5Pget_chunk_cache(hid_t dapl_id,
+ size_t *rdcc_nslots/*out*/,
+ size_t *rdcc_nbytes/*out*/,
+ double *rdcc_w0/*out*/);
+
+/* Dataset xfer property list (DXPL) routines */
+H5_DLL herr_t H5Pset_data_transform(hid_t plist_id, const char* expression);
+H5_DLL ssize_t H5Pget_data_transform(hid_t plist_id, char* expression /*out*/, size_t size);
+H5_DLL herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv,
+ void *bkg);
+H5_DLL size_t H5Pget_buffer(hid_t plist_id, void **tconv/*out*/,
+ void **bkg/*out*/);
+H5_DLL herr_t H5Pset_preserve(hid_t plist_id, hbool_t status);
+H5_DLL int H5Pget_preserve(hid_t plist_id);
+H5_DLL herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check);
+H5_DLL H5Z_EDC_t H5Pget_edc_check(hid_t plist_id);
+H5_DLL herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func,
+ void* op_data);
+H5_DLL herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle,
+ double right);
+H5_DLL herr_t H5Pget_btree_ratios(hid_t plist_id, double *left/*out*/,
+ double *middle/*out*/,
+ double *right/*out*/);
+H5_DLL herr_t H5Pset_vlen_mem_manager(hid_t plist_id,
+ H5MM_allocate_t alloc_func,
+ void *alloc_info, H5MM_free_t free_func,
+ void *free_info);
+H5_DLL herr_t H5Pget_vlen_mem_manager(hid_t plist_id,
+ H5MM_allocate_t *alloc_func,
+ void **alloc_info,
+ H5MM_free_t *free_func,
+ void **free_info);
+H5_DLL herr_t H5Pset_hyper_vector_size(hid_t fapl_id, size_t size);
+H5_DLL herr_t H5Pget_hyper_vector_size(hid_t fapl_id, size_t *size/*out*/);
+H5_DLL herr_t H5Pset_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t op, void* operate_data);
+H5_DLL herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, void** operate_data);
+#ifdef H5_HAVE_PARALLEL
+H5_DLL herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode);
+H5_DLL herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode);
+H5_DLL herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause);
+#endif /* H5_HAVE_PARALLEL */
+
+/* Link creation property list (LCPL) routines */
+H5_DLL herr_t H5Pset_create_intermediate_group(hid_t plist_id, unsigned crt_intmd);
+H5_DLL herr_t H5Pget_create_intermediate_group(hid_t plist_id, unsigned *crt_intmd /*out*/);
+
+/* Group creation property list (GCPL) routines */
+H5_DLL herr_t H5Pset_local_heap_size_hint(hid_t plist_id, size_t size_hint);
+H5_DLL herr_t H5Pget_local_heap_size_hint(hid_t plist_id, size_t *size_hint /*out*/);
+H5_DLL herr_t H5Pset_link_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense);
+H5_DLL herr_t H5Pget_link_phase_change(hid_t plist_id, unsigned *max_compact /*out*/, unsigned *min_dense /*out*/);
+H5_DLL herr_t H5Pset_est_link_info(hid_t plist_id, unsigned est_num_entries, unsigned est_name_len);
+H5_DLL herr_t H5Pget_est_link_info(hid_t plist_id, unsigned *est_num_entries /* out */, unsigned *est_name_len /* out */);
+H5_DLL herr_t H5Pset_link_creation_order(hid_t plist_id, unsigned crt_order_flags);
+H5_DLL herr_t H5Pget_link_creation_order(hid_t plist_id, unsigned *crt_order_flags /* out */);
+
+/* String creation property list (STRCPL) routines */
+H5_DLL herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding);
+H5_DLL herr_t H5Pget_char_encoding(hid_t plist_id, H5T_cset_t *encoding /*out*/);
+
+/* Link access property list (LAPL) routines */
+H5_DLL herr_t H5Pset_nlinks(hid_t plist_id, size_t nlinks);
+H5_DLL herr_t H5Pget_nlinks(hid_t plist_id, size_t *nlinks);
+H5_DLL herr_t H5Pset_elink_prefix(hid_t plist_id, const char *prefix);
+H5_DLL ssize_t H5Pget_elink_prefix(hid_t plist_id, char *prefix, size_t size);
+H5_DLL hid_t H5Pget_elink_fapl(hid_t lapl_id);
+H5_DLL herr_t H5Pset_elink_fapl(hid_t lapl_id, hid_t fapl_id);
+H5_DLL herr_t H5Pset_elink_acc_flags(hid_t lapl_id, unsigned flags);
+H5_DLL herr_t H5Pget_elink_acc_flags(hid_t lapl_id, unsigned *flags);
+H5_DLL herr_t H5Pset_elink_cb(hid_t lapl_id, H5L_elink_traverse_t func, void *op_data);
+H5_DLL herr_t H5Pget_elink_cb(hid_t lapl_id, H5L_elink_traverse_t *func, void **op_data);
+
+/* Object copy property list (OCPYPL) routines */
+H5_DLL herr_t H5Pset_copy_object(hid_t plist_id, unsigned crt_intmd);
+H5_DLL herr_t H5Pget_copy_object(hid_t plist_id, unsigned *crt_intmd /*out*/);
+H5_DLL herr_t H5Padd_merge_committed_dtype_path(hid_t plist_id, const char *path);
+H5_DLL herr_t H5Pfree_merge_committed_dtype_paths(hid_t plist_id);
+H5_DLL herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data);
+H5_DLL herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+/* We renamed the "root" of the property list class hierarchy */
+#define H5P_NO_CLASS H5P_ROOT
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL herr_t H5Pregister1(hid_t cls_id, const char *name, size_t size,
+ void *def_value, H5P_prp_create_func_t prp_create,
+ H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_close_func_t prp_close);
+H5_DLL herr_t H5Pinsert1(hid_t plist_id, const char *name, size_t size,
+ void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get,
+ H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy,
+ H5P_prp_close_func_t prp_close);
+H5_DLL H5Z_filter_t H5Pget_filter1(hid_t plist_id, unsigned filter,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]);
+H5_DLL herr_t H5Pget_filter_by_id1(hid_t plist_id, H5Z_filter_t id,
+ unsigned int *flags/*out*/, size_t *cd_nelmts/*out*/,
+ unsigned cd_values[]/*out*/, size_t namelen, char name[]/*out*/);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Ppublic_H */
+
diff --git a/privatemodules/nc4/include/H5Rpublic.h b/privatemodules/nc4/include/H5Rpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..04d319bebbbe7a5d5cc644d081c95d867063a886
--- /dev/null
+++ b/privatemodules/nc4/include/H5Rpublic.h
@@ -0,0 +1,92 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5S module.
+ */
+#ifndef _H5Rpublic_H
+#define _H5Rpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Gpublic.h"
+#include "H5Ipublic.h"
+
+/*
+ * Reference types allowed.
+ */
+typedef enum {
+ H5R_BADTYPE = (-1), /*invalid Reference Type */
+ H5R_OBJECT, /*Object reference */
+ H5R_DATASET_REGION, /*Dataset Region Reference */
+ H5R_MAXTYPE /*highest type (Invalid as true type) */
+} H5R_type_t;
+
+/* Note! Be careful with the sizes of the references because they should really
+ * depend on the run-time values in the file. Unfortunately, the arrays need
+ * to be defined at compile-time, so we have to go with the worst case sizes for
+ * them. -QAK
+ */
+#define H5R_OBJ_REF_BUF_SIZE sizeof(haddr_t)
+/* Object reference structure for user's code */
+typedef haddr_t hobj_ref_t; /* Needs to be large enough to store largest haddr_t in a worst case machine (ie. 8 bytes currently) */
+
+#define H5R_DSET_REG_REF_BUF_SIZE (sizeof(haddr_t)+4)
+/* 4 is used instead of sizeof(int) to permit portability between
+ the Crays and other machines (the heap ID is always encoded as an int32 anyway)
+*/
+/* Dataset Region reference structure for user's code */
+typedef unsigned char hdset_reg_ref_t[H5R_DSET_REG_REF_BUF_SIZE];/* Buffer to store heap ID and index */
+/* Needs to be large enough to store largest haddr_t in a worst case machine (ie. 8 bytes currently) plus an int */
+
+/* Publicly visible data structures */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5R.c */
+H5_DLL herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name,
+ H5R_type_t ref_type, hid_t space_id);
+H5_DLL hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, const void *ref);
+H5_DLL hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref);
+H5_DLL herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *_ref,
+ H5O_type_t *obj_type);
+H5_DLL ssize_t H5Rget_name(hid_t loc_id, H5R_type_t ref_type, const void *ref,
+ char *name/*out*/, size_t size);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *_ref);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* _H5Rpublic_H */
+
diff --git a/privatemodules/nc4/include/H5Spublic.h b/privatemodules/nc4/include/H5Spublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..c62a7b7648332f90700ffd56ab81a0187a441817
--- /dev/null
+++ b/privatemodules/nc4/include/H5Spublic.h
@@ -0,0 +1,152 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5S module.
+ */
+#ifndef _H5Spublic_H
+#define _H5Spublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+/* Define atomic datatypes */
+#define H5S_ALL 0
+#define H5S_UNLIMITED ((hsize_t)(hssize_t)(-1))
+
+/* Define user-level maximum number of dimensions */
+#define H5S_MAX_RANK 32
+
+/* Different types of dataspaces */
+typedef enum H5S_class_t {
+ H5S_NO_CLASS = -1, /*error */
+ H5S_SCALAR = 0, /*scalar variable */
+ H5S_SIMPLE = 1, /*simple data space */
+ H5S_NULL = 2 /*null data space */
+} H5S_class_t;
+
+/* Different ways of combining selections */
+typedef enum H5S_seloper_t {
+ H5S_SELECT_NOOP = -1, /* error */
+ H5S_SELECT_SET = 0, /* Select "set" operation */
+ H5S_SELECT_OR, /* Binary "or" operation for hyperslabs
+ * (add new selection to existing selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A or B: CCCCCCCCCCCCCCCC
+ */
+ H5S_SELECT_AND, /* Binary "and" operation for hyperslabs
+ * (only leave overlapped regions in selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A and B: CCCC
+ */
+ H5S_SELECT_XOR, /* Binary "xor" operation for hyperslabs
+ * (only leave non-overlapped regions in selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A xor B: CCCCCC CCCCCC
+ */
+ H5S_SELECT_NOTB, /* Binary "not" operation for hyperslabs
+ * (only leave non-overlapped regions in original selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * A not B: CCCCCC
+ */
+ H5S_SELECT_NOTA, /* Binary "not" operation for hyperslabs
+ * (only leave non-overlapped regions in new selection)
+ * Original region: AAAAAAAAAA
+ * New region: BBBBBBBBBB
+ * B not A: CCCCCC
+ */
+ H5S_SELECT_APPEND, /* Append elements to end of point selection */
+ H5S_SELECT_PREPEND, /* Prepend elements to beginning of point selection */
+ H5S_SELECT_INVALID /* Invalid upper bound on selection operations */
+} H5S_seloper_t;
+
+/* Enumerated type for the type of selection */
+typedef enum {
+ H5S_SEL_ERROR = -1, /* Error */
+ H5S_SEL_NONE = 0, /* Nothing selected */
+ H5S_SEL_POINTS = 1, /* Sequence of points selected */
+ H5S_SEL_HYPERSLABS = 2, /* "New-style" hyperslab selection defined */
+ H5S_SEL_ALL = 3, /* Entire extent selected */
+ H5S_SEL_N /*THIS MUST BE LAST */
+}H5S_sel_type;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Functions in H5S.c */
+H5_DLL hid_t H5Screate(H5S_class_t type);
+H5_DLL hid_t H5Screate_simple(int rank, const hsize_t dims[],
+ const hsize_t maxdims[]);
+H5_DLL herr_t H5Sset_extent_simple(hid_t space_id, int rank,
+ const hsize_t dims[],
+ const hsize_t max[]);
+H5_DLL hid_t H5Scopy(hid_t space_id);
+H5_DLL herr_t H5Sclose(hid_t space_id);
+H5_DLL herr_t H5Sencode(hid_t obj_id, void *buf, size_t *nalloc);
+H5_DLL hid_t H5Sdecode(const void *buf);
+H5_DLL hssize_t H5Sget_simple_extent_npoints(hid_t space_id);
+H5_DLL int H5Sget_simple_extent_ndims(hid_t space_id);
+H5_DLL int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[],
+ hsize_t maxdims[]);
+H5_DLL htri_t H5Sis_simple(hid_t space_id);
+H5_DLL hssize_t H5Sget_select_npoints(hid_t spaceid);
+H5_DLL herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op,
+ const hsize_t start[],
+ const hsize_t _stride[],
+ const hsize_t count[],
+ const hsize_t _block[]);
+/* #define NEW_HYPERSLAB_API */
+#ifdef NEW_HYPERSLAB_API
+H5_DLL hid_t H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op,
+ const hsize_t start[],
+ const hsize_t _stride[],
+ const hsize_t count[],
+ const hsize_t _block[]);
+H5_DLL herr_t H5Sselect_select(hid_t space1_id, H5S_seloper_t op,
+ hid_t space2_id);
+H5_DLL hid_t H5Scombine_select(hid_t space1_id, H5S_seloper_t op,
+ hid_t space2_id);
+#endif /* NEW_HYPERSLAB_API */
+H5_DLL herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op,
+ size_t num_elem, const hsize_t *coord);
+H5_DLL H5S_class_t H5Sget_simple_extent_type(hid_t space_id);
+H5_DLL herr_t H5Sset_extent_none(hid_t space_id);
+H5_DLL herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id);
+H5_DLL htri_t H5Sextent_equal(hid_t sid1, hid_t sid2);
+H5_DLL herr_t H5Sselect_all(hid_t spaceid);
+H5_DLL herr_t H5Sselect_none(hid_t spaceid);
+H5_DLL herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset);
+H5_DLL htri_t H5Sselect_valid(hid_t spaceid);
+H5_DLL hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid);
+H5_DLL hssize_t H5Sget_select_elem_npoints(hid_t spaceid);
+H5_DLL herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock,
+ hsize_t numblocks, hsize_t buf[/*numblocks*/]);
+H5_DLL herr_t H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint,
+ hsize_t numpoints, hsize_t buf[/*numpoints*/]);
+H5_DLL herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[],
+ hsize_t end[]);
+H5_DLL H5S_sel_type H5Sget_select_type(hid_t spaceid);
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Spublic_H */
+
diff --git a/privatemodules/nc4/include/H5TBpublic.h b/privatemodules/nc4/include/H5TBpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..874ef2077c9521b8a4f4493a0c6157cec4c9f300
--- /dev/null
+++ b/privatemodules/nc4/include/H5TBpublic.h
@@ -0,0 +1,233 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#ifndef _H5TBpublic_H
+#define _H5TBpublic_H
+
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Create functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBmake_table( const char *table_title,
+ hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ hsize_t nrecords,
+ size_t type_size,
+ const char *field_names[],
+ const size_t *field_offset,
+ const hid_t *field_types,
+ hsize_t chunk_size,
+ void *fill_data,
+ int compress,
+ const void *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Write functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBappend_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBwrite_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+
+H5_HLDLL herr_t H5TBwrite_fields_name( hid_t loc_id,
+ const char *dset_name,
+ const char *field_names,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBwrite_fields_index( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ const int *field_index,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ const void *buf );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Read functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+
+H5_HLDLL herr_t H5TBread_table( hid_t loc_id,
+ const char *dset_name,
+ size_t dst_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *dst_buf );
+
+
+H5_HLDLL herr_t H5TBread_fields_name( hid_t loc_id,
+ const char *dset_name,
+ const char *field_names,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+H5_HLDLL herr_t H5TBread_fields_index( hid_t loc_id,
+ const char *dset_name,
+ hsize_t nfields,
+ const int *field_index,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *field_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+
+H5_HLDLL herr_t H5TBread_records( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t type_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+/*-------------------------------------------------------------------------
+ *
+ * Inquiry functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5TBget_table_info ( hid_t loc_id,
+ const char *dset_name,
+ hsize_t *nfields,
+ hsize_t *nrecords );
+
+H5_HLDLL herr_t H5TBget_field_info( hid_t loc_id,
+ const char *dset_name,
+ char *field_names[],
+ size_t *field_sizes,
+ size_t *field_offsets,
+ size_t *type_size );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Manipulation functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+
+H5_HLDLL herr_t H5TBdelete_record( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords );
+
+
+H5_HLDLL herr_t H5TBinsert_record( hid_t loc_id,
+ const char *dset_name,
+ hsize_t start,
+ hsize_t nrecords,
+ size_t dst_size,
+ const size_t *dst_offset,
+ const size_t *dst_sizes,
+ void *buf );
+
+H5_HLDLL herr_t H5TBadd_records_from( hid_t loc_id,
+ const char *dset_name1,
+ hsize_t start1,
+ hsize_t nrecords,
+ const char *dset_name2,
+ hsize_t start2 );
+
+H5_HLDLL herr_t H5TBcombine_tables( hid_t loc_id1,
+ const char *dset_name1,
+ hid_t loc_id2,
+ const char *dset_name2,
+ const char *dset_name3 );
+
+H5_HLDLL herr_t H5TBinsert_field( hid_t loc_id,
+ const char *dset_name,
+ const char *field_name,
+ hid_t field_type,
+ hsize_t position,
+ const void *fill_data,
+ const void *buf );
+
+H5_HLDLL herr_t H5TBdelete_field( hid_t loc_id,
+ const char *dset_name,
+ const char *field_name );
+
+
+/*-------------------------------------------------------------------------
+ *
+ * Table attribute functions
+ *
+ *-------------------------------------------------------------------------
+ */
+
+H5_HLDLL herr_t H5TBAget_title( hid_t loc_id,
+ char *table_title );
+
+H5_HLDLL htri_t H5TBAget_fill(hid_t loc_id,
+ const char *dset_name,
+ hid_t dset_id,
+ unsigned char *dst_buf);
+
+#ifdef __cplusplus
+}
+#endif
+
+
+#endif
+
diff --git a/privatemodules/nc4/include/H5Tpublic.h b/privatemodules/nc4/include/H5Tpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..d646ef1e887e048fdf6a5de709e2bd6db4f45519
--- /dev/null
+++ b/privatemodules/nc4/include/H5Tpublic.h
@@ -0,0 +1,621 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the H5T module.
+ */
+#ifndef _H5Tpublic_H
+#define _H5Tpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+#include "H5Ipublic.h"
+
+#define HOFFSET(S,M) (offsetof(S,M))
+
+/* These are the various classes of datatypes */
+/* If this goes over 16 types (0-15), the file format will need to change) */
+typedef enum H5T_class_t {
+ H5T_NO_CLASS = -1, /*error */
+ H5T_INTEGER = 0, /*integer types */
+ H5T_FLOAT = 1, /*floating-point types */
+ H5T_TIME = 2, /*date and time types */
+ H5T_STRING = 3, /*character string types */
+ H5T_BITFIELD = 4, /*bit field types */
+ H5T_OPAQUE = 5, /*opaque types */
+ H5T_COMPOUND = 6, /*compound types */
+ H5T_REFERENCE = 7, /*reference types */
+ H5T_ENUM = 8, /*enumeration types */
+ H5T_VLEN = 9, /*Variable-Length types */
+ H5T_ARRAY = 10, /*Array types */
+
+ H5T_NCLASSES /*this must be last */
+} H5T_class_t;
+
+/* Byte orders */
+typedef enum H5T_order_t {
+ H5T_ORDER_ERROR = -1, /*error */
+ H5T_ORDER_LE = 0, /*little endian */
+ H5T_ORDER_BE = 1, /*bit endian */
+ H5T_ORDER_VAX = 2, /*VAX mixed endian */
+ H5T_ORDER_MIXED = 3, /*Compound type with mixed member orders */
+ H5T_ORDER_NONE = 4 /*no particular order (strings, bits,..) */
+ /*H5T_ORDER_NONE must be last */
+} H5T_order_t;
+
+/* Types of integer sign schemes */
+typedef enum H5T_sign_t {
+ H5T_SGN_ERROR = -1, /*error */
+ H5T_SGN_NONE = 0, /*this is an unsigned type */
+ H5T_SGN_2 = 1, /*two's complement */
+
+ H5T_NSGN = 2 /*this must be last! */
+} H5T_sign_t;
+
+/* Floating-point normalization schemes */
+typedef enum H5T_norm_t {
+ H5T_NORM_ERROR = -1, /*error */
+ H5T_NORM_IMPLIED = 0, /*msb of mantissa isn't stored, always 1 */
+ H5T_NORM_MSBSET = 1, /*msb of mantissa is always 1 */
+ H5T_NORM_NONE = 2 /*not normalized */
+ /*H5T_NORM_NONE must be last */
+} H5T_norm_t;
+
+/*
+ * Character set to use for text strings. Do not change these values since
+ * they appear in HDF5 files!
+ */
+typedef enum H5T_cset_t {
+ H5T_CSET_ERROR = -1, /*error */
+ H5T_CSET_ASCII = 0, /*US ASCII */
+ H5T_CSET_UTF8 = 1, /*UTF-8 Unicode encoding */
+ H5T_CSET_RESERVED_2 = 2, /*reserved for later use */
+ H5T_CSET_RESERVED_3 = 3, /*reserved for later use */
+ H5T_CSET_RESERVED_4 = 4, /*reserved for later use */
+ H5T_CSET_RESERVED_5 = 5, /*reserved for later use */
+ H5T_CSET_RESERVED_6 = 6, /*reserved for later use */
+ H5T_CSET_RESERVED_7 = 7, /*reserved for later use */
+ H5T_CSET_RESERVED_8 = 8, /*reserved for later use */
+ H5T_CSET_RESERVED_9 = 9, /*reserved for later use */
+ H5T_CSET_RESERVED_10 = 10, /*reserved for later use */
+ H5T_CSET_RESERVED_11 = 11, /*reserved for later use */
+ H5T_CSET_RESERVED_12 = 12, /*reserved for later use */
+ H5T_CSET_RESERVED_13 = 13, /*reserved for later use */
+ H5T_CSET_RESERVED_14 = 14, /*reserved for later use */
+ H5T_CSET_RESERVED_15 = 15 /*reserved for later use */
+} H5T_cset_t;
+#define H5T_NCSET H5T_CSET_RESERVED_2 /*Number of character sets actually defined */
+
+/*
+ * Type of padding to use in character strings. Do not change these values
+ * since they appear in HDF5 files!
+ */
+typedef enum H5T_str_t {
+ H5T_STR_ERROR = -1, /*error */
+ H5T_STR_NULLTERM = 0, /*null terminate like in C */
+ H5T_STR_NULLPAD = 1, /*pad with nulls */
+ H5T_STR_SPACEPAD = 2, /*pad with spaces like in Fortran */
+ H5T_STR_RESERVED_3 = 3, /*reserved for later use */
+ H5T_STR_RESERVED_4 = 4, /*reserved for later use */
+ H5T_STR_RESERVED_5 = 5, /*reserved for later use */
+ H5T_STR_RESERVED_6 = 6, /*reserved for later use */
+ H5T_STR_RESERVED_7 = 7, /*reserved for later use */
+ H5T_STR_RESERVED_8 = 8, /*reserved for later use */
+ H5T_STR_RESERVED_9 = 9, /*reserved for later use */
+ H5T_STR_RESERVED_10 = 10, /*reserved for later use */
+ H5T_STR_RESERVED_11 = 11, /*reserved for later use */
+ H5T_STR_RESERVED_12 = 12, /*reserved for later use */
+ H5T_STR_RESERVED_13 = 13, /*reserved for later use */
+ H5T_STR_RESERVED_14 = 14, /*reserved for later use */
+ H5T_STR_RESERVED_15 = 15 /*reserved for later use */
+} H5T_str_t;
+#define H5T_NSTR H5T_STR_RESERVED_3 /*num H5T_str_t types actually defined */
+
+/* Type of padding to use in other atomic types */
+typedef enum H5T_pad_t {
+ H5T_PAD_ERROR = -1, /*error */
+ H5T_PAD_ZERO = 0, /*always set to zero */
+ H5T_PAD_ONE = 1, /*always set to one */
+ H5T_PAD_BACKGROUND = 2, /*set to background value */
+
+ H5T_NPAD = 3 /*THIS MUST BE LAST */
+} H5T_pad_t;
+
+/* Commands sent to conversion functions */
+typedef enum H5T_cmd_t {
+ H5T_CONV_INIT = 0, /*query and/or initialize private data */
+ H5T_CONV_CONV = 1, /*convert data from source to dest datatype */
+ H5T_CONV_FREE = 2 /*function is being removed from path */
+} H5T_cmd_t;
+
+/* How is the `bkg' buffer used by the conversion function? */
+typedef enum H5T_bkg_t {
+ H5T_BKG_NO = 0, /*background buffer is not needed, send NULL */
+ H5T_BKG_TEMP = 1, /*bkg buffer used as temp storage only */
+ H5T_BKG_YES = 2 /*init bkg buf with data before conversion */
+} H5T_bkg_t;
+
+/* Type conversion client data */
+typedef struct H5T_cdata_t {
+ H5T_cmd_t command;/*what should the conversion function do? */
+ H5T_bkg_t need_bkg;/*is the background buffer needed? */
+ hbool_t recalc; /*recalculate private data */
+ void *priv; /*private data */
+} H5T_cdata_t;
+
+/* Conversion function persistence */
+typedef enum H5T_pers_t {
+ H5T_PERS_DONTCARE = -1, /*wild card */
+ H5T_PERS_HARD = 0, /*hard conversion function */
+ H5T_PERS_SOFT = 1 /*soft conversion function */
+} H5T_pers_t;
+
+/* The order to retrieve atomic native datatype */
+typedef enum H5T_direction_t {
+ H5T_DIR_DEFAULT = 0, /*default direction is inscendent */
+ H5T_DIR_ASCEND = 1, /*in inscendent order */
+ H5T_DIR_DESCEND = 2 /*in descendent order */
+} H5T_direction_t;
+
+/* The exception type passed into the conversion callback function */
+typedef enum H5T_conv_except_t {
+ H5T_CONV_EXCEPT_RANGE_HI = 0, /*source value is greater than destination's range */
+ H5T_CONV_EXCEPT_RANGE_LOW = 1, /*source value is less than destination's range */
+ H5T_CONV_EXCEPT_PRECISION = 2, /*source value loses precision in destination */
+ H5T_CONV_EXCEPT_TRUNCATE = 3, /*source value is truncated in destination */
+ H5T_CONV_EXCEPT_PINF = 4, /*source value is positive infinity(floating number) */
+ H5T_CONV_EXCEPT_NINF = 5, /*source value is negative infinity(floating number) */
+ H5T_CONV_EXCEPT_NAN = 6 /*source value is NaN(floating number) */
+} H5T_conv_except_t;
+
+/* The return value from conversion callback function H5T_conv_except_func_t */
+typedef enum H5T_conv_ret_t {
+ H5T_CONV_ABORT = -1, /*abort conversion */
+ H5T_CONV_UNHANDLED = 0, /*callback function failed to handle the exception */
+ H5T_CONV_HANDLED = 1 /*callback function handled the exception successfully */
+} H5T_conv_ret_t;
+
+/* Variable Length Datatype struct in memory */
+/* (This is only used for VL sequences, not VL strings, which are stored in char *'s) */
+typedef struct {
+ size_t len; /* Length of VL data (in base type units) */
+ void *p; /* Pointer to VL data */
+} hvl_t;
+
+/* Variable Length String information */
+#define H5T_VARIABLE ((size_t)(-1)) /* Indicate that a string is variable length (null-terminated in C, instead of fixed length) */
+
+/* Opaque information */
+#define H5T_OPAQUE_TAG_MAX 256 /* Maximum length of an opaque tag */
+ /* This could be raised without too much difficulty */
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* All datatype conversion functions are... */
+typedef herr_t (*H5T_conv_t) (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata,
+ size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf,
+ void *bkg, hid_t dset_xfer_plist);
+
+/* Exception handler. If an exception like overflow happenes during conversion,
+ * this function is called if it's registered through H5Pset_type_conv_cb.
+ */
+typedef H5T_conv_ret_t (*H5T_conv_except_func_t)(H5T_conv_except_t except_type,
+ hid_t src_id, hid_t dst_id, void *src_buf, void *dst_buf, void *user_data);
+
+/* When this header is included from a private header, don't make calls to H5open() */
+#undef H5OPEN
+#ifndef _H5private_H
+#define H5OPEN H5open(),
+#else /* _H5private_H */
+#define H5OPEN
+#endif /* _H5private_H */
+
+/*
+ * The IEEE floating point types in various byte orders.
+ */
+#define H5T_IEEE_F32BE (H5OPEN H5T_IEEE_F32BE_g)
+#define H5T_IEEE_F32LE (H5OPEN H5T_IEEE_F32LE_g)
+#define H5T_IEEE_F64BE (H5OPEN H5T_IEEE_F64BE_g)
+#define H5T_IEEE_F64LE (H5OPEN H5T_IEEE_F64LE_g)
+H5_DLLVAR hid_t H5T_IEEE_F32BE_g;
+H5_DLLVAR hid_t H5T_IEEE_F32LE_g;
+H5_DLLVAR hid_t H5T_IEEE_F64BE_g;
+H5_DLLVAR hid_t H5T_IEEE_F64LE_g;
+
+/*
+ * These are "standard" types. For instance, signed (2's complement) and
+ * unsigned integers of various sizes and byte orders.
+ */
+#define H5T_STD_I8BE (H5OPEN H5T_STD_I8BE_g)
+#define H5T_STD_I8LE (H5OPEN H5T_STD_I8LE_g)
+#define H5T_STD_I16BE (H5OPEN H5T_STD_I16BE_g)
+#define H5T_STD_I16LE (H5OPEN H5T_STD_I16LE_g)
+#define H5T_STD_I32BE (H5OPEN H5T_STD_I32BE_g)
+#define H5T_STD_I32LE (H5OPEN H5T_STD_I32LE_g)
+#define H5T_STD_I64BE (H5OPEN H5T_STD_I64BE_g)
+#define H5T_STD_I64LE (H5OPEN H5T_STD_I64LE_g)
+#define H5T_STD_U8BE (H5OPEN H5T_STD_U8BE_g)
+#define H5T_STD_U8LE (H5OPEN H5T_STD_U8LE_g)
+#define H5T_STD_U16BE (H5OPEN H5T_STD_U16BE_g)
+#define H5T_STD_U16LE (H5OPEN H5T_STD_U16LE_g)
+#define H5T_STD_U32BE (H5OPEN H5T_STD_U32BE_g)
+#define H5T_STD_U32LE (H5OPEN H5T_STD_U32LE_g)
+#define H5T_STD_U64BE (H5OPEN H5T_STD_U64BE_g)
+#define H5T_STD_U64LE (H5OPEN H5T_STD_U64LE_g)
+#define H5T_STD_B8BE (H5OPEN H5T_STD_B8BE_g)
+#define H5T_STD_B8LE (H5OPEN H5T_STD_B8LE_g)
+#define H5T_STD_B16BE (H5OPEN H5T_STD_B16BE_g)
+#define H5T_STD_B16LE (H5OPEN H5T_STD_B16LE_g)
+#define H5T_STD_B32BE (H5OPEN H5T_STD_B32BE_g)
+#define H5T_STD_B32LE (H5OPEN H5T_STD_B32LE_g)
+#define H5T_STD_B64BE (H5OPEN H5T_STD_B64BE_g)
+#define H5T_STD_B64LE (H5OPEN H5T_STD_B64LE_g)
+#define H5T_STD_REF_OBJ (H5OPEN H5T_STD_REF_OBJ_g)
+#define H5T_STD_REF_DSETREG (H5OPEN H5T_STD_REF_DSETREG_g)
+H5_DLLVAR hid_t H5T_STD_I8BE_g;
+H5_DLLVAR hid_t H5T_STD_I8LE_g;
+H5_DLLVAR hid_t H5T_STD_I16BE_g;
+H5_DLLVAR hid_t H5T_STD_I16LE_g;
+H5_DLLVAR hid_t H5T_STD_I32BE_g;
+H5_DLLVAR hid_t H5T_STD_I32LE_g;
+H5_DLLVAR hid_t H5T_STD_I64BE_g;
+H5_DLLVAR hid_t H5T_STD_I64LE_g;
+H5_DLLVAR hid_t H5T_STD_U8BE_g;
+H5_DLLVAR hid_t H5T_STD_U8LE_g;
+H5_DLLVAR hid_t H5T_STD_U16BE_g;
+H5_DLLVAR hid_t H5T_STD_U16LE_g;
+H5_DLLVAR hid_t H5T_STD_U32BE_g;
+H5_DLLVAR hid_t H5T_STD_U32LE_g;
+H5_DLLVAR hid_t H5T_STD_U64BE_g;
+H5_DLLVAR hid_t H5T_STD_U64LE_g;
+H5_DLLVAR hid_t H5T_STD_B8BE_g;
+H5_DLLVAR hid_t H5T_STD_B8LE_g;
+H5_DLLVAR hid_t H5T_STD_B16BE_g;
+H5_DLLVAR hid_t H5T_STD_B16LE_g;
+H5_DLLVAR hid_t H5T_STD_B32BE_g;
+H5_DLLVAR hid_t H5T_STD_B32LE_g;
+H5_DLLVAR hid_t H5T_STD_B64BE_g;
+H5_DLLVAR hid_t H5T_STD_B64LE_g;
+H5_DLLVAR hid_t H5T_STD_REF_OBJ_g;
+H5_DLLVAR hid_t H5T_STD_REF_DSETREG_g;
+
+/*
+ * Types which are particular to Unix.
+ */
+#define H5T_UNIX_D32BE (H5OPEN H5T_UNIX_D32BE_g)
+#define H5T_UNIX_D32LE (H5OPEN H5T_UNIX_D32LE_g)
+#define H5T_UNIX_D64BE (H5OPEN H5T_UNIX_D64BE_g)
+#define H5T_UNIX_D64LE (H5OPEN H5T_UNIX_D64LE_g)
+H5_DLLVAR hid_t H5T_UNIX_D32BE_g;
+H5_DLLVAR hid_t H5T_UNIX_D32LE_g;
+H5_DLLVAR hid_t H5T_UNIX_D64BE_g;
+H5_DLLVAR hid_t H5T_UNIX_D64LE_g;
+
+/*
+ * Types particular to the C language. String types use `bytes' instead
+ * of `bits' as their size.
+ */
+#define H5T_C_S1 (H5OPEN H5T_C_S1_g)
+H5_DLLVAR hid_t H5T_C_S1_g;
+
+/*
+ * Types particular to Fortran.
+ */
+#define H5T_FORTRAN_S1 (H5OPEN H5T_FORTRAN_S1_g)
+H5_DLLVAR hid_t H5T_FORTRAN_S1_g;
+
+/*
+ * These types are for Intel CPU's. They are little endian with IEEE
+ * floating point.
+ */
+#define H5T_INTEL_I8 H5T_STD_I8LE
+#define H5T_INTEL_I16 H5T_STD_I16LE
+#define H5T_INTEL_I32 H5T_STD_I32LE
+#define H5T_INTEL_I64 H5T_STD_I64LE
+#define H5T_INTEL_U8 H5T_STD_U8LE
+#define H5T_INTEL_U16 H5T_STD_U16LE
+#define H5T_INTEL_U32 H5T_STD_U32LE
+#define H5T_INTEL_U64 H5T_STD_U64LE
+#define H5T_INTEL_B8 H5T_STD_B8LE
+#define H5T_INTEL_B16 H5T_STD_B16LE
+#define H5T_INTEL_B32 H5T_STD_B32LE
+#define H5T_INTEL_B64 H5T_STD_B64LE
+#define H5T_INTEL_F32 H5T_IEEE_F32LE
+#define H5T_INTEL_F64 H5T_IEEE_F64LE
+
+/*
+ * These types are for DEC Alpha CPU's. They are little endian with IEEE
+ * floating point.
+ */
+#define H5T_ALPHA_I8 H5T_STD_I8LE
+#define H5T_ALPHA_I16 H5T_STD_I16LE
+#define H5T_ALPHA_I32 H5T_STD_I32LE
+#define H5T_ALPHA_I64 H5T_STD_I64LE
+#define H5T_ALPHA_U8 H5T_STD_U8LE
+#define H5T_ALPHA_U16 H5T_STD_U16LE
+#define H5T_ALPHA_U32 H5T_STD_U32LE
+#define H5T_ALPHA_U64 H5T_STD_U64LE
+#define H5T_ALPHA_B8 H5T_STD_B8LE
+#define H5T_ALPHA_B16 H5T_STD_B16LE
+#define H5T_ALPHA_B32 H5T_STD_B32LE
+#define H5T_ALPHA_B64 H5T_STD_B64LE
+#define H5T_ALPHA_F32 H5T_IEEE_F32LE
+#define H5T_ALPHA_F64 H5T_IEEE_F64LE
+
+/*
+ * These types are for MIPS cpu's commonly used in SGI systems. They are big
+ * endian with IEEE floating point.
+ */
+#define H5T_MIPS_I8 H5T_STD_I8BE
+#define H5T_MIPS_I16 H5T_STD_I16BE
+#define H5T_MIPS_I32 H5T_STD_I32BE
+#define H5T_MIPS_I64 H5T_STD_I64BE
+#define H5T_MIPS_U8 H5T_STD_U8BE
+#define H5T_MIPS_U16 H5T_STD_U16BE
+#define H5T_MIPS_U32 H5T_STD_U32BE
+#define H5T_MIPS_U64 H5T_STD_U64BE
+#define H5T_MIPS_B8 H5T_STD_B8BE
+#define H5T_MIPS_B16 H5T_STD_B16BE
+#define H5T_MIPS_B32 H5T_STD_B32BE
+#define H5T_MIPS_B64 H5T_STD_B64BE
+#define H5T_MIPS_F32 H5T_IEEE_F32BE
+#define H5T_MIPS_F64 H5T_IEEE_F64BE
+
+/*
+ * The VAX floating point types (i.e. in VAX byte order)
+ */
+#define H5T_VAX_F32 (H5OPEN H5T_VAX_F32_g)
+#define H5T_VAX_F64 (H5OPEN H5T_VAX_F64_g)
+H5_DLLVAR hid_t H5T_VAX_F32_g;
+H5_DLLVAR hid_t H5T_VAX_F64_g;
+
+/*
+ * The predefined native types. These are the types detected by H5detect and
+ * they violate the naming scheme a little. Instead of a class name,
+ * precision and byte order as the last component, they have a C-like type
+ * name. If the type begins with `U' then it is the unsigned version of the
+ * integer type; other integer types are signed. The type LLONG corresponds
+ * to C's `long long' and LDOUBLE is `long double' (these types might be the
+ * same as `LONG' and `DOUBLE' respectively).
+ */
+#define H5T_NATIVE_CHAR (CHAR_MIN?H5T_NATIVE_SCHAR:H5T_NATIVE_UCHAR)
+#define H5T_NATIVE_SCHAR (H5OPEN H5T_NATIVE_SCHAR_g)
+#define H5T_NATIVE_UCHAR (H5OPEN H5T_NATIVE_UCHAR_g)
+#define H5T_NATIVE_SHORT (H5OPEN H5T_NATIVE_SHORT_g)
+#define H5T_NATIVE_USHORT (H5OPEN H5T_NATIVE_USHORT_g)
+#define H5T_NATIVE_INT (H5OPEN H5T_NATIVE_INT_g)
+#define H5T_NATIVE_UINT (H5OPEN H5T_NATIVE_UINT_g)
+#define H5T_NATIVE_LONG (H5OPEN H5T_NATIVE_LONG_g)
+#define H5T_NATIVE_ULONG (H5OPEN H5T_NATIVE_ULONG_g)
+#define H5T_NATIVE_LLONG (H5OPEN H5T_NATIVE_LLONG_g)
+#define H5T_NATIVE_ULLONG (H5OPEN H5T_NATIVE_ULLONG_g)
+#define H5T_NATIVE_FLOAT (H5OPEN H5T_NATIVE_FLOAT_g)
+#define H5T_NATIVE_DOUBLE (H5OPEN H5T_NATIVE_DOUBLE_g)
+#if H5_SIZEOF_LONG_DOUBLE !=0
+#define H5T_NATIVE_LDOUBLE (H5OPEN H5T_NATIVE_LDOUBLE_g)
+#endif
+#define H5T_NATIVE_B8 (H5OPEN H5T_NATIVE_B8_g)
+#define H5T_NATIVE_B16 (H5OPEN H5T_NATIVE_B16_g)
+#define H5T_NATIVE_B32 (H5OPEN H5T_NATIVE_B32_g)
+#define H5T_NATIVE_B64 (H5OPEN H5T_NATIVE_B64_g)
+#define H5T_NATIVE_OPAQUE (H5OPEN H5T_NATIVE_OPAQUE_g)
+#define H5T_NATIVE_HADDR (H5OPEN H5T_NATIVE_HADDR_g)
+#define H5T_NATIVE_HSIZE (H5OPEN H5T_NATIVE_HSIZE_g)
+#define H5T_NATIVE_HSSIZE (H5OPEN H5T_NATIVE_HSSIZE_g)
+#define H5T_NATIVE_HERR (H5OPEN H5T_NATIVE_HERR_g)
+#define H5T_NATIVE_HBOOL (H5OPEN H5T_NATIVE_HBOOL_g)
+H5_DLLVAR hid_t H5T_NATIVE_SCHAR_g;
+H5_DLLVAR hid_t H5T_NATIVE_UCHAR_g;
+H5_DLLVAR hid_t H5T_NATIVE_SHORT_g;
+H5_DLLVAR hid_t H5T_NATIVE_USHORT_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_g;
+H5_DLLVAR hid_t H5T_NATIVE_LONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_ULONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_LLONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_ULLONG_g;
+H5_DLLVAR hid_t H5T_NATIVE_FLOAT_g;
+H5_DLLVAR hid_t H5T_NATIVE_DOUBLE_g;
+#if H5_SIZEOF_LONG_DOUBLE !=0
+H5_DLLVAR hid_t H5T_NATIVE_LDOUBLE_g;
+#endif
+H5_DLLVAR hid_t H5T_NATIVE_B8_g;
+H5_DLLVAR hid_t H5T_NATIVE_B16_g;
+H5_DLLVAR hid_t H5T_NATIVE_B32_g;
+H5_DLLVAR hid_t H5T_NATIVE_B64_g;
+H5_DLLVAR hid_t H5T_NATIVE_OPAQUE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HADDR_g;
+H5_DLLVAR hid_t H5T_NATIVE_HSIZE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HSSIZE_g;
+H5_DLLVAR hid_t H5T_NATIVE_HERR_g;
+H5_DLLVAR hid_t H5T_NATIVE_HBOOL_g;
+
+/* C9x integer types */
+#define H5T_NATIVE_INT8 (H5OPEN H5T_NATIVE_INT8_g)
+#define H5T_NATIVE_UINT8 (H5OPEN H5T_NATIVE_UINT8_g)
+#define H5T_NATIVE_INT_LEAST8 (H5OPEN H5T_NATIVE_INT_LEAST8_g)
+#define H5T_NATIVE_UINT_LEAST8 (H5OPEN H5T_NATIVE_UINT_LEAST8_g)
+#define H5T_NATIVE_INT_FAST8 (H5OPEN H5T_NATIVE_INT_FAST8_g)
+#define H5T_NATIVE_UINT_FAST8 (H5OPEN H5T_NATIVE_UINT_FAST8_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT8_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST8_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST8_g;
+
+#define H5T_NATIVE_INT16 (H5OPEN H5T_NATIVE_INT16_g)
+#define H5T_NATIVE_UINT16 (H5OPEN H5T_NATIVE_UINT16_g)
+#define H5T_NATIVE_INT_LEAST16 (H5OPEN H5T_NATIVE_INT_LEAST16_g)
+#define H5T_NATIVE_UINT_LEAST16 (H5OPEN H5T_NATIVE_UINT_LEAST16_g)
+#define H5T_NATIVE_INT_FAST16 (H5OPEN H5T_NATIVE_INT_FAST16_g)
+#define H5T_NATIVE_UINT_FAST16 (H5OPEN H5T_NATIVE_UINT_FAST16_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT16_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST16_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST16_g;
+
+#define H5T_NATIVE_INT32 (H5OPEN H5T_NATIVE_INT32_g)
+#define H5T_NATIVE_UINT32 (H5OPEN H5T_NATIVE_UINT32_g)
+#define H5T_NATIVE_INT_LEAST32 (H5OPEN H5T_NATIVE_INT_LEAST32_g)
+#define H5T_NATIVE_UINT_LEAST32 (H5OPEN H5T_NATIVE_UINT_LEAST32_g)
+#define H5T_NATIVE_INT_FAST32 (H5OPEN H5T_NATIVE_INT_FAST32_g)
+#define H5T_NATIVE_UINT_FAST32 (H5OPEN H5T_NATIVE_UINT_FAST32_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT32_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST32_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST32_g;
+
+#define H5T_NATIVE_INT64 (H5OPEN H5T_NATIVE_INT64_g)
+#define H5T_NATIVE_UINT64 (H5OPEN H5T_NATIVE_UINT64_g)
+#define H5T_NATIVE_INT_LEAST64 (H5OPEN H5T_NATIVE_INT_LEAST64_g)
+#define H5T_NATIVE_UINT_LEAST64 (H5OPEN H5T_NATIVE_UINT_LEAST64_g)
+#define H5T_NATIVE_INT_FAST64 (H5OPEN H5T_NATIVE_INT_FAST64_g)
+#define H5T_NATIVE_UINT_FAST64 (H5OPEN H5T_NATIVE_UINT_FAST64_g)
+H5_DLLVAR hid_t H5T_NATIVE_INT64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT64_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_LEAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_LEAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_INT_FAST64_g;
+H5_DLLVAR hid_t H5T_NATIVE_UINT_FAST64_g;
+
+/* Operations defined on all datatypes */
+H5_DLL hid_t H5Tcreate(H5T_class_t type, size_t size);
+H5_DLL hid_t H5Tcopy(hid_t type_id);
+H5_DLL herr_t H5Tclose(hid_t type_id);
+H5_DLL htri_t H5Tequal(hid_t type1_id, hid_t type2_id);
+H5_DLL herr_t H5Tlock(hid_t type_id);
+H5_DLL herr_t H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id,
+ hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id);
+H5_DLL hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id);
+H5_DLL herr_t H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id);
+H5_DLL hid_t H5Tget_create_plist(hid_t type_id);
+H5_DLL htri_t H5Tcommitted(hid_t type_id);
+H5_DLL herr_t H5Tencode(hid_t obj_id, void *buf, size_t *nalloc);
+H5_DLL hid_t H5Tdecode(const void *buf);
+
+/* Operations defined on compound datatypes */
+H5_DLL herr_t H5Tinsert(hid_t parent_id, const char *name, size_t offset,
+ hid_t member_id);
+H5_DLL herr_t H5Tpack(hid_t type_id);
+
+/* Operations defined on enumeration datatypes */
+H5_DLL hid_t H5Tenum_create(hid_t base_id);
+H5_DLL herr_t H5Tenum_insert(hid_t type, const char *name, const void *value);
+H5_DLL herr_t H5Tenum_nameof(hid_t type, const void *value, char *name/*out*/,
+ size_t size);
+H5_DLL herr_t H5Tenum_valueof(hid_t type, const char *name,
+ void *value/*out*/);
+
+/* Operations defined on variable-length datatypes */
+H5_DLL hid_t H5Tvlen_create(hid_t base_id);
+
+/* Operations defined on array datatypes */
+H5_DLL hid_t H5Tarray_create2(hid_t base_id, unsigned ndims,
+ const hsize_t dim[/* ndims */]);
+H5_DLL int H5Tget_array_ndims(hid_t type_id);
+H5_DLL int H5Tget_array_dims2(hid_t type_id, hsize_t dims[]);
+
+/* Operations defined on opaque datatypes */
+H5_DLL herr_t H5Tset_tag(hid_t type, const char *tag);
+H5_DLL char *H5Tget_tag(hid_t type);
+
+/* Querying property values */
+H5_DLL hid_t H5Tget_super(hid_t type);
+H5_DLL H5T_class_t H5Tget_class(hid_t type_id);
+H5_DLL htri_t H5Tdetect_class(hid_t type_id, H5T_class_t cls);
+H5_DLL size_t H5Tget_size(hid_t type_id);
+H5_DLL H5T_order_t H5Tget_order(hid_t type_id);
+H5_DLL size_t H5Tget_precision(hid_t type_id);
+H5_DLL int H5Tget_offset(hid_t type_id);
+H5_DLL herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb/*out*/,
+ H5T_pad_t *msb/*out*/);
+H5_DLL H5T_sign_t H5Tget_sign(hid_t type_id);
+H5_DLL herr_t H5Tget_fields(hid_t type_id, size_t *spos/*out*/,
+ size_t *epos/*out*/, size_t *esize/*out*/,
+ size_t *mpos/*out*/, size_t *msize/*out*/);
+H5_DLL size_t H5Tget_ebias(hid_t type_id);
+H5_DLL H5T_norm_t H5Tget_norm(hid_t type_id);
+H5_DLL H5T_pad_t H5Tget_inpad(hid_t type_id);
+H5_DLL H5T_str_t H5Tget_strpad(hid_t type_id);
+H5_DLL int H5Tget_nmembers(hid_t type_id);
+H5_DLL char *H5Tget_member_name(hid_t type_id, unsigned membno);
+H5_DLL int H5Tget_member_index(hid_t type_id, const char *name);
+H5_DLL size_t H5Tget_member_offset(hid_t type_id, unsigned membno);
+H5_DLL H5T_class_t H5Tget_member_class(hid_t type_id, unsigned membno);
+H5_DLL hid_t H5Tget_member_type(hid_t type_id, unsigned membno);
+H5_DLL herr_t H5Tget_member_value(hid_t type_id, unsigned membno, void *value/*out*/);
+H5_DLL H5T_cset_t H5Tget_cset(hid_t type_id);
+H5_DLL htri_t H5Tis_variable_str(hid_t type_id);
+H5_DLL hid_t H5Tget_native_type(hid_t type_id, H5T_direction_t direction);
+
+/* Setting property values */
+H5_DLL herr_t H5Tset_size(hid_t type_id, size_t size);
+H5_DLL herr_t H5Tset_order(hid_t type_id, H5T_order_t order);
+H5_DLL herr_t H5Tset_precision(hid_t type_id, size_t prec);
+H5_DLL herr_t H5Tset_offset(hid_t type_id, size_t offset);
+H5_DLL herr_t H5Tset_pad(hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb);
+H5_DLL herr_t H5Tset_sign(hid_t type_id, H5T_sign_t sign);
+H5_DLL herr_t H5Tset_fields(hid_t type_id, size_t spos, size_t epos,
+ size_t esize, size_t mpos, size_t msize);
+H5_DLL herr_t H5Tset_ebias(hid_t type_id, size_t ebias);
+H5_DLL herr_t H5Tset_norm(hid_t type_id, H5T_norm_t norm);
+H5_DLL herr_t H5Tset_inpad(hid_t type_id, H5T_pad_t pad);
+H5_DLL herr_t H5Tset_cset(hid_t type_id, H5T_cset_t cset);
+H5_DLL herr_t H5Tset_strpad(hid_t type_id, H5T_str_t strpad);
+
+/* Type conversion database */
+H5_DLL herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id,
+ hid_t dst_id, H5T_conv_t func);
+H5_DLL herr_t H5Tunregister(H5T_pers_t pers, const char *name, hid_t src_id,
+ hid_t dst_id, H5T_conv_t func);
+H5_DLL H5T_conv_t H5Tfind(hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata);
+H5_DLL htri_t H5Tcompiler_conv(hid_t src_id, hid_t dst_id);
+H5_DLL herr_t H5Tconvert(hid_t src_id, hid_t dst_id, size_t nelmts,
+ void *buf, void *background, hid_t plist_id);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/* Macros */
+
+
+/* Typedefs */
+
+
+/* Function prototypes */
+H5_DLL herr_t H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id);
+H5_DLL hid_t H5Topen1(hid_t loc_id, const char *name);
+H5_DLL hid_t H5Tarray_create1(hid_t base_id, int ndims,
+ const hsize_t dim[/* ndims */],
+ const int perm[/* ndims */]);
+H5_DLL int H5Tget_array_dims1(hid_t type_id, hsize_t dims[], int perm[]);
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif /* _H5Tpublic_H */
+
diff --git a/privatemodules/nc4/include/H5Zpublic.h b/privatemodules/nc4/include/H5Zpublic.h
new file mode 100644
index 0000000000000000000000000000000000000000..8daa5f490d32fb8af75f11fbb07d9e08008f16ea
--- /dev/null
+++ b/privatemodules/nc4/include/H5Zpublic.h
@@ -0,0 +1,250 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Programmer: Robb Matzke <matzke@llnl.gov>
+ * Thursday, April 16, 1998
+ */
+
+#ifndef _H5Zpublic_H
+#define _H5Zpublic_H
+
+/* Public headers needed by this file */
+#include "H5public.h"
+
+/*
+ * Filter identifiers. Values 0 through 255 are for filters defined by the
+ * HDF5 library. Values 256 through 511 are available for testing new
+ * filters. Subsequent values should be obtained from the HDF5 development
+ * team at hdf5dev@ncsa.uiuc.edu. These values will never change because they
+ * appear in the HDF5 files.
+ */
+typedef int H5Z_filter_t;
+
+/* Filter IDs */
+#define H5Z_FILTER_ERROR (-1) /*no filter */
+#define H5Z_FILTER_NONE 0 /*reserved indefinitely */
+#define H5Z_FILTER_DEFLATE 1 /*deflation like gzip */
+#define H5Z_FILTER_SHUFFLE 2 /*shuffle the data */
+#define H5Z_FILTER_FLETCHER32 3 /*fletcher32 checksum of EDC */
+#define H5Z_FILTER_SZIP 4 /*szip compression */
+#define H5Z_FILTER_NBIT 5 /*nbit compression */
+#define H5Z_FILTER_SCALEOFFSET 6 /*scale+offset compression */
+#define H5Z_FILTER_RESERVED 256 /*filter ids below this value are reserved for library use */
+
+#define H5Z_FILTER_MAX 65535 /*maximum filter id */
+
+/* General macros */
+#define H5Z_FILTER_ALL 0 /* Symbol to remove all filters in H5Premove_filter */
+#define H5Z_MAX_NFILTERS 32 /* Maximum number of filters allowed in a pipeline */
+ /* (should probably be allowed to be an
+ * unlimited amount, but currently each
+ * filter uses a bit in a 32-bit field,
+ * so the format would have to be
+ * changed to accomodate that)
+ */
+
+/* Flags for filter definition (stored) */
+#define H5Z_FLAG_DEFMASK 0x00ff /*definition flag mask */
+#define H5Z_FLAG_MANDATORY 0x0000 /*filter is mandatory */
+#define H5Z_FLAG_OPTIONAL 0x0001 /*filter is optional */
+
+/* Additional flags for filter invocation (not stored) */
+#define H5Z_FLAG_INVMASK 0xff00 /*invocation flag mask */
+#define H5Z_FLAG_REVERSE 0x0100 /*reverse direction; read */
+#define H5Z_FLAG_SKIP_EDC 0x0200 /*skip EDC filters for read */
+
+/* Special parameters for szip compression */
+/* [These are aliases for the similar definitions in szlib.h, which we can't
+ * include directly due to the duplication of various symbols with the zlib.h
+ * header file] */
+#define H5_SZIP_ALLOW_K13_OPTION_MASK 1
+#define H5_SZIP_CHIP_OPTION_MASK 2
+#define H5_SZIP_EC_OPTION_MASK 4
+#define H5_SZIP_NN_OPTION_MASK 32
+#define H5_SZIP_MAX_PIXELS_PER_BLOCK 32
+
+/* Macros for the shuffle filter */
+#define H5Z_SHUFFLE_USER_NPARMS 0 /* Number of parameters that users can set */
+#define H5Z_SHUFFLE_TOTAL_NPARMS 1 /* Total number of parameters for filter */
+
+/* Macros for the szip filter */
+#define H5Z_SZIP_USER_NPARMS 2 /* Number of parameters that users can set */
+#define H5Z_SZIP_TOTAL_NPARMS 4 /* Total number of parameters for filter */
+#define H5Z_SZIP_PARM_MASK 0 /* "User" parameter for option mask */
+#define H5Z_SZIP_PARM_PPB 1 /* "User" parameter for pixels-per-block */
+#define H5Z_SZIP_PARM_BPP 2 /* "Local" parameter for bits-per-pixel */
+#define H5Z_SZIP_PARM_PPS 3 /* "Local" parameter for pixels-per-scanline */
+
+/* Macros for the nbit filter */
+#define H5Z_NBIT_USER_NPARMS 0 /* Number of parameters that users can set */
+
+/* Macros for the scale offset filter */
+#define H5Z_SCALEOFFSET_USER_NPARMS 2 /* Number of parameters that users can set */
+
+
+/* Special parameters for ScaleOffset filter*/
+#define H5Z_SO_INT_MINBITS_DEFAULT 0
+typedef enum H5Z_SO_scale_type_t {
+ H5Z_SO_FLOAT_DSCALE = 0,
+ H5Z_SO_FLOAT_ESCALE = 1,
+ H5Z_SO_INT = 2
+} H5Z_SO_scale_type_t;
+
+/* Current version of the H5Z_class_t struct */
+#define H5Z_CLASS_T_VERS (1)
+
+/* Values to decide if EDC is enabled for reading data */
+typedef enum H5Z_EDC_t {
+ H5Z_ERROR_EDC = -1, /* error value */
+ H5Z_DISABLE_EDC = 0,
+ H5Z_ENABLE_EDC = 1,
+ H5Z_NO_EDC = 2 /* must be the last */
+} H5Z_EDC_t;
+
+/* Bit flags for H5Zget_filter_info */
+#define H5Z_FILTER_CONFIG_ENCODE_ENABLED (0x0001)
+#define H5Z_FILTER_CONFIG_DECODE_ENABLED (0x0002)
+
+/* Return values for filter callback function */
+typedef enum H5Z_cb_return_t {
+ H5Z_CB_ERROR = -1,
+ H5Z_CB_FAIL = 0, /* I/O should fail if filter fails. */
+ H5Z_CB_CONT = 1, /* I/O continues if filter fails. */
+ H5Z_CB_NO = 2
+} H5Z_cb_return_t;
+
+/* Filter callback function definition */
+typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf,
+ size_t buf_size, void* op_data);
+
+/* Structure for filter callback property */
+typedef struct H5Z_cb_t {
+ H5Z_filter_func_t func;
+ void* op_data;
+} H5Z_cb_t;
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/*
+ * Before a dataset gets created, the "can_apply" callbacks for any filters used
+ * in the dataset creation property list are called
+ * with the dataset's dataset creation property list, the dataset's datatype and
+ * a dataspace describing a chunk (for chunked dataset storage).
+ *
+ * The "can_apply" callback must determine if the combination of the dataset
+ * creation property list setting, the datatype and the dataspace represent a
+ * valid combination to apply this filter to. For example, some cases of
+ * invalid combinations may involve the filter not operating correctly on
+ * certain datatypes (or certain datatype sizes), or certain sizes of the chunk
+ * dataspace.
+ *
+ * The "can_apply" callback can be the NULL pointer, in which case, the library
+ * will assume that it can apply to any combination of dataset creation
+ * property list values, datatypes and dataspaces.
+ *
+ * The "can_apply" callback returns positive a valid combination, zero for an
+ * invalid combination and negative for an error.
+ */
+typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
+
+/*
+ * After the "can_apply" callbacks are checked for new datasets, the "set_local"
+ * callbacks for any filters used in the dataset creation property list are
+ * called. These callbacks receive the dataset's private copy of the dataset
+ * creation property list passed in to H5Dcreate (i.e. not the actual property
+ * list passed in to H5Dcreate) and the datatype ID passed in to H5Dcreate
+ * (which is not copied and should not be modified) and a dataspace describing
+ * the chunk (for chunked dataset storage) (which should also not be modified).
+ *
+ * The "set_local" callback must set any parameters that are specific to this
+ * dataset, based on the combination of the dataset creation property list
+ * values, the datatype and the dataspace. For example, some filters perform
+ * different actions based on different datatypes (or datatype sizes) or
+ * different number of dimensions or dataspace sizes.
+ *
+ * The "set_local" callback can be the NULL pointer, in which case, the library
+ * will assume that there are no dataset-specific settings for this filter.
+ *
+ * The "set_local" callback must return non-negative on success and negative
+ * for an error.
+ */
+typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id);
+
+/*
+ * A filter gets definition flags and invocation flags (defined above), the
+ * client data array and size defined when the filter was added to the
+ * pipeline, the size in bytes of the data on which to operate, and pointers
+ * to a buffer and its allocated size.
+ *
+ * The filter should store the result in the supplied buffer if possible,
+ * otherwise it can allocate a new buffer, freeing the original. The
+ * allocated size of the new buffer should be returned through the BUF_SIZE
+ * pointer and the new buffer through the BUF pointer.
+ *
+ * The return value from the filter is the number of bytes in the output
+ * buffer. If an error occurs then the function should return zero and leave
+ * all pointer arguments unchanged.
+ */
+typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts,
+ const unsigned int cd_values[], size_t nbytes,
+ size_t *buf_size, void **buf);
+
+/*
+ * The filter table maps filter identification numbers to structs that
+ * contain a pointers to the filter function and timing statistics.
+ */
+typedef struct H5Z_class2_t {
+ int version; /* Version number of the H5Z_class_t struct */
+ H5Z_filter_t id; /* Filter ID number */
+ unsigned encoder_present; /* Does this filter have an encoder? */
+ unsigned decoder_present; /* Does this filter have a decoder? */
+ const char *name; /* Comment for debugging */
+ H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
+ H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
+ H5Z_func_t filter; /* The actual filter function */
+} H5Z_class2_t;
+
+H5_DLL herr_t H5Zregister(const void *cls);
+H5_DLL herr_t H5Zunregister(H5Z_filter_t id);
+H5_DLL htri_t H5Zfilter_avail(H5Z_filter_t id);
+H5_DLL herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags);
+
+/* Symbols defined for compatibility with previous versions of the HDF5 API.
+ *
+ * Use of these symbols is deprecated.
+ */
+#ifndef H5_NO_DEPRECATED_SYMBOLS
+
+/*
+ * The filter table maps filter identification numbers to structs that
+ * contain a pointers to the filter function and timing statistics.
+ */
+typedef struct H5Z_class1_t {
+ H5Z_filter_t id; /* Filter ID number */
+ const char *name; /* Comment for debugging */
+ H5Z_can_apply_func_t can_apply; /* The "can apply" callback for a filter */
+ H5Z_set_local_func_t set_local; /* The "set local" callback for a filter */
+ H5Z_func_t filter; /* The actual filter function */
+} H5Z_class1_t;
+
+#endif /* H5_NO_DEPRECATED_SYMBOLS */
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/privatemodules/nc4/include/H5api_adpt.h b/privatemodules/nc4/include/H5api_adpt.h
new file mode 100644
index 0000000000000000000000000000000000000000..845a9a0c9753f1451afb45018bc18d21e66dfebc
--- /dev/null
+++ b/privatemodules/nc4/include/H5api_adpt.h
@@ -0,0 +1,424 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * H5api_adpt.h
+ * Used for the HDF5 dll project
+ * Created by Patrick Lu on 1/12/99
+ */
+#ifndef H5API_ADPT_H
+#define H5API_ADPT_H
+
+/* This will only be defined if HDF5 was built with CMake */
+#ifdef H5_BUILT_AS_DYNAMIC_LIB
+
+#if defined (hdf5_EXPORTS)
+ #define _HDF5DLL_
+#else
+ #define _HDF5USEDLL_
+#endif
+
+#if defined (hdf5_test_EXPORTS)
+ #define _HDF5TESTDLL_
+#else
+ #define _HDF5TESTUSEDLL_
+#endif
+
+#if defined (hdf5_tools_EXPORTS)
+ #define _HDF5TOOLSDLL_
+#else
+ #define _HDF5TOOLSUSEDLL_
+#endif
+
+#if defined (hdf5_cpp_EXPORTS)
+ #define HDF5_CPPDLL_EXPORTS
+#else
+ #define HDF5CPP_USEDLL
+#endif
+
+#if defined (hdf5_hl_EXPORTS)
+ #define _HDF5_HLDLL_EXPORTS_
+#else
+ #define _HDF5USEHLDLL_
+#endif
+
+#if defined (hdf5_hl_cpp_EXPORTS)
+ #define HDF5_HL_CPPDLL_EXPORTS
+#else
+ #define HDF5USE_HLCPPDLL
+#endif
+
+#if defined (hdf5_f90cstub_EXPORTS)
+ #define HDF5FORT_CSTUB_DLL_EXPORTS
+#else
+ #define HDF5FORT_CSTUB_USEDLL
+#endif
+
+#if defined (hdf5_test_f90cstub_EXPORTS)
+ #define HDF5FORTTEST_CSTUB_DLL_EXPORTS
+#endif
+
+#if defined (hdf5_hl_f90cstub_EXPORTS)
+ #define HDF5_HL_F90CSTUBDLL_EXPORTS
+#endif
+
+#if defined(hdf5_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLL __declspec(dllexport)
+ #define H5_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLL __attribute__ ((visibility("default")))
+ #define H5_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLL __declspec(dllimport)
+ #define H5_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLL __attribute__ ((visibility("default")))
+ #define H5_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_DLL
+ #define H5_DLL
+ #define H5_DLLVAR extern
+#endif /* _HDF5DLL_ */
+
+#if defined(hdf5_test_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TEST_DLL __declspec(dllexport)
+ #define H5TEST_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TEST_DLL __attribute__ ((visibility("default")))
+ #define H5TEST_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TEST_DLL __declspec(dllimport)
+ #define H5TEST_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TEST_DLL __attribute__ ((visibility("default")))
+ #define H5TEST_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5TEST_DLL
+ #define H5TEST_DLL
+ #define H5TEST_DLLVAR extern
+#endif /* H5TEST_DLL */
+
+#if defined(hdf5_tools_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TOOLS_DLL __declspec(dllexport)
+ #define H5TOOLS_DLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TOOLS_DLL __attribute__ ((visibility("default")))
+ #define H5TOOLS_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5TOOLS_DLL __declspec(dllimport)
+ #define H5TOOLS_DLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5TOOLS_DLL __attribute__ ((visibility("default")))
+ #define H5TOOLS_DLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5TOOLS_DLL
+ #define H5TOOLS_DLL
+ #define H5TOOLS_DLLVAR extern
+#endif /* H5TOOLS_DLL */
+
+#if defined(hdf5_cpp_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLLCPP __declspec(dllexport)
+ #define H5_DLLCPPVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLLCPP __attribute__ ((visibility("default")))
+ #define H5_DLLCPPVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_DLLCPP __declspec(dllimport)
+ #define H5_DLLCPPVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_DLLCPP __attribute__ ((visibility("default")))
+ #define H5_DLLCPPVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_DLLCPP
+ #define H5_DLLCPP
+ #define H5_DLLCPPVAR extern
+#endif /* H5_DLLCPP */
+
+#if defined(hdf5_hl_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLDLL __declspec(dllexport)
+ #define H5_HLDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLDLL __attribute__ ((visibility("default")))
+ #define H5_HLDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLDLL __declspec(dllimport)
+ #define H5_HLDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLDLL __attribute__ ((visibility("default")))
+ #define H5_HLDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_HLDLL
+ #define H5_HLDLL
+ #define H5_HLDLLVAR extern
+#endif /* H5_HLDLL */
+
+#if defined(hdf5_hl_cpp_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLCPPDLL __declspec(dllexport)
+ #define H5_HLCPPDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLCPPDLL __attribute__ ((visibility("default")))
+ #define H5_HLCPPDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_HLCPPDLL __declspec(dllimport)
+ #define H5_HLCPPDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_HLCPPDLL __attribute__ ((visibility("default")))
+ #define H5_HLCPPDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_HLCPPDLL
+ #define H5_HLCPPDLL
+ #define H5_HLCPPDLLVAR extern
+#endif /* H5_HLCPPDLL */
+
+#if defined(hdf5_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCDLL __declspec(dllexport)
+ #define H5_FCDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCDLL __attribute__ ((visibility("default")))
+ #define H5_FCDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCDLL __declspec(dllimport)
+ #define H5_FCDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCDLL __attribute__ ((visibility("default")))
+ #define H5_FCDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_FCDLL
+ #define H5_FCDLL
+ #define H5_FCDLLVAR extern
+#endif /* H5_FCDLL */
+
+#if defined(hdf5_test_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCTESTDLL __declspec(dllexport)
+ #define H5_FCTESTDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCTESTDLL __attribute__ ((visibility("default")))
+ #define H5_FCTESTDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define H5_FCTESTDLL __declspec(dllimport)
+ #define H5_FCTESTDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define H5_FCTESTDLL __attribute__ ((visibility("default")))
+ #define H5_FCTESTDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef H5_FCTESTDLL
+ #define H5_FCTESTDLL
+ #define H5_FCTESTDLLVAR extern
+#endif /* H5_FCTESTDLL */
+
+#if defined(hdf5_hl_f90cstub_EXPORTS)
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define HDF5_HL_F90CSTUBDLL __declspec(dllexport)
+ #define HDF5_HL_F90CSTUBDLLVAR extern __declspec(dllexport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define HDF5_HL_F90CSTUBDLL __attribute__ ((visibility("default")))
+ #define HDF5_HL_F90CSTUBDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#else
+ #if defined (_MSC_VER) /* MSVC Compiler Case */
+ #define HDF5_HL_F90CSTUBDLL __declspec(dllimport)
+ #define HDF5_HL_F90CSTUBDLLVAR __declspec(dllimport)
+ #elif (__GNUC__ >= 4) /* GCC 4.x has support for visibility options */
+ #define HDF5_HL_F90CSTUBDLL __attribute__ ((visibility("default")))
+ #define HDF5_HL_F90CSTUBDLLVAR extern __attribute__ ((visibility("default")))
+ #endif
+#endif
+
+#ifndef HDF5_HL_F90CSTUBDLL
+ #define HDF5_HL_F90CSTUBDLL
+ #define HDF5_HL_F90CSTUBDLLVAR extern
+#endif /* HDF5_HL_F90CSTUBDLL */
+
+#elif defined(H5_BUILT_AS_STATIC_LIB)
+ #define H5_DLL
+ #define H5_HLDLL
+ #define H5_HLCPPDLL
+ #define HDF5_HL_F90CSTUBDLL
+ #define H5_DLLVAR extern
+ #define H5_DLLCPP
+ #define H5TEST_DLL
+ #define H5TEST_DLLVAR extern
+ #define H5TOOLS_DLL
+ #define H5TOOLS_DLLVAR extern
+ #define H5_FCDLL
+ #define H5_FCDLLVAR extern
+ #define H5_FCTESTDLL
+ #define H5_FCTESTDLLVAR extern
+
+#else
+/* This is the original HDFGroup defined preprocessor code which should still work
+ * with the VS projects that are maintained by "The HDF Group"
+ * The Visual Studio project files will not be supported in the next major release of 1.10.
+ */
+
+#if defined(H5_HAVE_WIN32_API)
+
+#if defined(_HDF5DLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_DLL __declspec(dllexport)
+#define H5_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5USEDLL_)
+#define H5_DLL __declspec(dllimport)
+#define H5_DLLVAR __declspec(dllimport)
+#else
+#define H5_DLL
+#define H5_DLLVAR extern
+#endif /* _HDF5DLL_ */
+
+#if defined(_HDF5TESTDLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5TEST_DLL __declspec(dllexport)
+#define H5TEST_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5TESTUSEDLL_)
+#define H5TEST_DLL __declspec(dllimport)
+#define H5TEST_DLLVAR __declspec(dllimport)
+#else
+#define H5TEST_DLL
+#define H5TEST_DLLVAR extern
+#endif /* _HDF5TESTDLL_ */
+
+#if defined(_HDF5TOOLSDLL_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5TOOLS_DLL __declspec(dllexport)
+#define H5TOOLS_DLLVAR extern __declspec(dllexport)
+#elif defined(_HDF5TOOLSUSEDLL_)
+#define H5TOOLS_DLL __declspec(dllimport)
+#define H5TOOLS_DLLVAR __declspec(dllimport)
+#else
+#define H5TOOLS_DLL
+#define H5TOOLS_DLLVAR extern
+#endif /* _HDF5TOOLSDLL_ */
+
+#if defined(_HDF5_HLDLL_EXPORTS_)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_HLDLL __declspec(dllexport)
+#elif defined(_HDF5USEHLDLL_)
+#define H5_HLDLL __declspec(dllimport)
+#else
+#define H5_HLDLL
+#endif /* _HDF5_HLDLL_EXPORTS */
+
+#if defined(HDF5_HL_CPPDLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_HLCPPDLL __declspec(dllexport)
+#elif defined(HDF5USE_HLCPPDLL)
+#define H5_HLCPPDLL __declspec(dllimport)
+#else
+#define H5_HLCPPDLL
+#endif /*HDF5_HL_CPPDLL_EXPORTS*/
+
+#if defined(HDF5_HL_F90CSTUBDLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define HDF5_HL_F90CSTUBDLL __declspec(dllexport)
+#elif defined(HDF5USE_HLF90CSTUBDLL)
+#define HDF5_HL_F90CSTUBDLL __declspec(dllimport)
+#else
+#define HDF5_HL_F90CSTUBDLL
+#endif /*HDF5_HL_F90CSTUBDLL_EXPORTS*/
+
+
+#if defined(HDF5FORT_CSTUB_DLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_FCDLL __declspec(dllexport)
+#define H5_FCDLLVAR extern __declspec(dllexport)
+#elif defined(HDF5FORT_CSTUB_USEDLL)
+#define H5_FCDLL __declspec(dllimport)
+#define H5_FCDLLVAR __declspec(dllimport)
+#else
+#define H5_FCDLL
+#define H5_FCDLLVAR extern
+#endif /* _HDF5_FORTRANDLL_EXPORTS_ */
+
+#if defined(HDF5FORTTEST_CSTUB_DLL_EXPORTS)
+#pragma warning(disable: 4273) /* Disable the dll linkage warnings */
+#define H5_FCTESTDLL __declspec(dllexport)
+#define H5_FCTESTDLLVAR extern __declspec(dllexport)
+#elif defined(HDF5FORTTEST_CSTUB_USEDLL)
+#define H5_FCTESTDLL __declspec(dllimport)
+#define H5_FCTESTDLLVAR __declspec(dllimport)
+#else
+#define H5_FCTESTDLL
+#define H5_FCTESTDLLVAR extern
+#endif /* _HDF5_FORTRANDLL_EXPORTS_ */
+
+/* Added to export or to import C++ APIs - BMR (02-15-2002) */
+#if defined(HDF5_CPPDLL_EXPORTS) /* this name is generated at creation */
+#define H5_DLLCPP __declspec(dllexport)
+#elif defined(HDF5CPP_USEDLL)
+#define H5_DLLCPP __declspec(dllimport)
+#else
+#define H5_DLLCPP
+#endif /* HDF5_CPPDLL_EXPORTS */
+
+#else /*H5_HAVE_WIN32_API*/
+#define H5_DLL
+#define H5_HLDLL
+#define H5_HLCPPDLL
+#define HDF5_HL_F90CSTUBDLL
+#define H5_DLLVAR extern
+#define H5_DLLCPP
+#define H5TEST_DLL
+#define H5TEST_DLLVAR extern
+#define H5TOOLS_DLL
+#define H5TOOLS_DLLVAR extern
+#define H5_FCDLL
+#define H5_FCDLLVAR extern
+#define H5_FCTESTDLL
+#define H5_FCTESTDLLVAR extern
+#endif /*H5_HAVE_WIN32_API*/
+
+#endif /* H5API_ADPT_H */
+
+#endif /* */
diff --git a/privatemodules/nc4/include/H5overflow.h b/privatemodules/nc4/include/H5overflow.h
new file mode 100644
index 0000000000000000000000000000000000000000..f4064f439639654a7c97934da129e07d09eaf8cb
--- /dev/null
+++ b/privatemodules/nc4/include/H5overflow.h
@@ -0,0 +1,1939 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_overflow -- do not edit */
+/* Add new types to H5overflow.txt file */
+
+
+#ifndef _H5overflow_H
+#define _H5overflow_H
+
+
+/* Each type in this file is tested for assignment to the other types,
+ * and range checks are defined for bad assignments at run-time.
+ */
+
+/* Assignment checks for unsigned */
+
+/* src: unsigned, dst: int */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_INT
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_INT
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_INT */
+ #define ASSIGN_unsigned_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: int */
+
+/* src: unsigned, dst: uint8_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT8_T
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT8_T
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_unsigned_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint8_t */
+
+/* src: unsigned, dst: uint16_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT16_T
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT16_T
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_unsigned_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint16_t */
+
+/* src: unsigned, dst: uint32_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT32_T
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT32_T
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_unsigned_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint32_t */
+
+/* src: unsigned, dst: uint64_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_UINT64_T
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_UINT64_T
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_unsigned_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: uint64_t */
+
+/* src: unsigned, dst: ptrdiff_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_unsigned_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: ptrdiff_t */
+
+/* src: unsigned, dst: size_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_SIZE_T
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_SIZE_T
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_unsigned_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: size_t */
+
+/* src: unsigned, dst: ssize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_unsigned_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: ssize_t */
+
+/* src: unsigned, dst: haddr_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HADDR_T
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HADDR_T
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_unsigned_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: haddr_t */
+
+/* src: unsigned, dst: hsize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_unsigned_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: hsize_t */
+
+/* src: unsigned, dst: hssize_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_unsigned_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: hssize_t */
+
+/* src: unsigned, dst: h5_stat_size_t */
+#if H5_SIZEOF_UNSIGNED < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UNSIGNED > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UNSIGNED == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_unsigned_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: unsigned dst: h5_stat_size_t */
+
+
+/* Assignment checks for int */
+
+/* src: int, dst: unsigned */
+#if H5_SIZEOF_INT < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_int_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: unsigned */
+
+/* src: int, dst: uint8_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT8_T
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT8_T
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_int_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint8_t */
+
+/* src: int, dst: uint16_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT16_T
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT16_T
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_int_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint16_t */
+
+/* src: int, dst: uint32_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT32_T
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT32_T
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_int_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint32_t */
+
+/* src: int, dst: uint64_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_UINT64_T
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_UINT64_T
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_int_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: uint64_t */
+
+/* src: int, dst: ptrdiff_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_int_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: ptrdiff_t */
+
+/* src: int, dst: size_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_SIZE_T
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_SIZE_T
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_int_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: size_t */
+
+/* src: int, dst: ssize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_int_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: ssize_t */
+
+/* src: int, dst: haddr_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HADDR_T
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HADDR_T
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_int_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: haddr_t */
+
+/* src: int, dst: hsize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_int_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: hsize_t */
+
+/* src: int, dst: hssize_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_int_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: hssize_t */
+
+/* src: int, dst: h5_stat_size_t */
+#if H5_SIZEOF_INT < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_INT > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_INT == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_int_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: int dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint8_t */
+
+/* src: uint8_t, dst: unsigned */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint8_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: unsigned */
+
+/* src: uint8_t, dst: int */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_INT
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_INT
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint8_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: int */
+
+/* src: uint8_t, dst: uint16_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint8_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint16_t */
+
+/* src: uint8_t, dst: uint32_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint8_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint32_t */
+
+/* src: uint8_t, dst: uint64_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint8_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: uint64_t */
+
+/* src: uint8_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint8_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: ptrdiff_t */
+
+/* src: uint8_t, dst: size_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint8_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: size_t */
+
+/* src: uint8_t, dst: ssize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint8_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: ssize_t */
+
+/* src: uint8_t, dst: haddr_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint8_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: haddr_t */
+
+/* src: uint8_t, dst: hsize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint8_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: hsize_t */
+
+/* src: uint8_t, dst: hssize_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint8_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: hssize_t */
+
+/* src: uint8_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT8_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT8_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT8_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint8_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint8_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint16_t */
+
+/* src: uint16_t, dst: unsigned */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint16_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: unsigned */
+
+/* src: uint16_t, dst: int */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_INT
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_INT
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint16_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: int */
+
+/* src: uint16_t, dst: uint8_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint16_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint8_t */
+
+/* src: uint16_t, dst: uint32_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint16_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint32_t */
+
+/* src: uint16_t, dst: uint64_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint16_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: uint64_t */
+
+/* src: uint16_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint16_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: ptrdiff_t */
+
+/* src: uint16_t, dst: size_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint16_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: size_t */
+
+/* src: uint16_t, dst: ssize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint16_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: ssize_t */
+
+/* src: uint16_t, dst: haddr_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint16_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: haddr_t */
+
+/* src: uint16_t, dst: hsize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint16_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: hsize_t */
+
+/* src: uint16_t, dst: hssize_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint16_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: hssize_t */
+
+/* src: uint16_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT16_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT16_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT16_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint16_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint16_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint32_t */
+
+/* src: uint32_t, dst: unsigned */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint32_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: unsigned */
+
+/* src: uint32_t, dst: int */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_INT
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_INT
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint32_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: int */
+
+/* src: uint32_t, dst: uint8_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint32_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint8_t */
+
+/* src: uint32_t, dst: uint16_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint32_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint16_t */
+
+/* src: uint32_t, dst: uint64_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_uint32_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: uint64_t */
+
+/* src: uint32_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint32_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: ptrdiff_t */
+
+/* src: uint32_t, dst: size_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint32_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: size_t */
+
+/* src: uint32_t, dst: ssize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint32_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: ssize_t */
+
+/* src: uint32_t, dst: haddr_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint32_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: haddr_t */
+
+/* src: uint32_t, dst: hsize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint32_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: hsize_t */
+
+/* src: uint32_t, dst: hssize_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint32_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: hssize_t */
+
+/* src: uint32_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT32_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT32_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT32_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint32_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint32_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for uint64_t */
+
+/* src: uint64_t, dst: unsigned */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_uint64_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: unsigned */
+
+/* src: uint64_t, dst: int */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_INT
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_INT
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_INT */
+ #define ASSIGN_uint64_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: int */
+
+/* src: uint64_t, dst: uint8_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_uint64_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint8_t */
+
+/* src: uint64_t, dst: uint16_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_uint64_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint16_t */
+
+/* src: uint64_t, dst: uint32_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_uint64_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: uint32_t */
+
+/* src: uint64_t, dst: ptrdiff_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_uint64_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: ptrdiff_t */
+
+/* src: uint64_t, dst: size_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_uint64_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: size_t */
+
+/* src: uint64_t, dst: ssize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_uint64_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: ssize_t */
+
+/* src: uint64_t, dst: haddr_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_uint64_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: haddr_t */
+
+/* src: uint64_t, dst: hsize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_uint64_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: hsize_t */
+
+/* src: uint64_t, dst: hssize_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_uint64_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: hssize_t */
+
+/* src: uint64_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_UINT64_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_UINT64_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_UINT64_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_uint64_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: uint64_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for ptrdiff_t */
+
+/* src: ptrdiff_t, dst: unsigned */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_ptrdiff_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: unsigned */
+
+/* src: ptrdiff_t, dst: int */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_INT
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_INT
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_INT */
+ #define ASSIGN_ptrdiff_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: int */
+
+/* src: ptrdiff_t, dst: uint8_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_ptrdiff_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint8_t */
+
+/* src: ptrdiff_t, dst: uint16_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_ptrdiff_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint16_t */
+
+/* src: ptrdiff_t, dst: uint32_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_ptrdiff_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint32_t */
+
+/* src: ptrdiff_t, dst: uint64_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_ptrdiff_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: uint64_t */
+
+/* src: ptrdiff_t, dst: size_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: size_t */
+
+/* src: ptrdiff_t, dst: ssize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: ssize_t */
+
+/* src: ptrdiff_t, dst: haddr_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_ptrdiff_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: haddr_t */
+
+/* src: ptrdiff_t, dst: hsize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: hsize_t */
+
+/* src: ptrdiff_t, dst: hssize_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: hssize_t */
+
+/* src: ptrdiff_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_PTRDIFF_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_PTRDIFF_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_PTRDIFF_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_ptrdiff_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ptrdiff_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for size_t */
+
+/* src: size_t, dst: unsigned */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: unsigned */
+
+/* src: size_t, dst: int */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: int */
+
+/* src: size_t, dst: uint8_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint8_t */
+
+/* src: size_t, dst: uint16_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint16_t */
+
+/* src: size_t, dst: uint32_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint32_t */
+
+/* src: size_t, dst: uint64_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: uint64_t */
+
+/* src: size_t, dst: ptrdiff_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: ptrdiff_t */
+
+/* src: size_t, dst: ssize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: ssize_t */
+
+/* src: size_t, dst: haddr_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: haddr_t */
+
+/* src: size_t, dst: hsize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: hsize_t */
+
+/* src: size_t, dst: hssize_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: hssize_t */
+
+/* src: size_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_SIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_size_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: size_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for ssize_t */
+
+/* src: ssize_t, dst: unsigned */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_ssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: unsigned */
+
+/* src: ssize_t, dst: int */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_ssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: int */
+
+/* src: ssize_t, dst: uint8_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_ssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint8_t */
+
+/* src: ssize_t, dst: uint16_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_ssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint16_t */
+
+/* src: ssize_t, dst: uint32_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_ssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint32_t */
+
+/* src: ssize_t, dst: uint64_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_ssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: uint64_t */
+
+/* src: ssize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_ssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: ptrdiff_t */
+
+/* src: ssize_t, dst: size_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_ssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: size_t */
+
+/* src: ssize_t, dst: haddr_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_ssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: haddr_t */
+
+/* src: ssize_t, dst: hsize_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_ssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: hsize_t */
+
+/* src: ssize_t, dst: hssize_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_ssize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: hssize_t */
+
+/* src: ssize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_SSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_SSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_SSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_ssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: ssize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for haddr_t */
+
+/* src: haddr_t, dst: unsigned */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_haddr_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: unsigned */
+
+/* src: haddr_t, dst: int */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_INT
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_INT
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_INT */
+ #define ASSIGN_haddr_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: int */
+
+/* src: haddr_t, dst: uint8_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_haddr_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint8_t */
+
+/* src: haddr_t, dst: uint16_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_haddr_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint16_t */
+
+/* src: haddr_t, dst: uint32_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_haddr_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint32_t */
+
+/* src: haddr_t, dst: uint64_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_haddr_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: uint64_t */
+
+/* src: haddr_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_haddr_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: ptrdiff_t */
+
+/* src: haddr_t, dst: size_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_haddr_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: size_t */
+
+/* src: haddr_t, dst: ssize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_haddr_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: ssize_t */
+
+/* src: haddr_t, dst: hsize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_haddr_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: hsize_t */
+
+/* src: haddr_t, dst: hssize_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_haddr_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: hssize_t */
+
+/* src: haddr_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HADDR_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HADDR_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HADDR_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_haddr_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: haddr_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for hsize_t */
+
+/* src: hsize_t, dst: unsigned */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_hsize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: unsigned */
+
+/* src: hsize_t, dst: int */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_hsize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: int */
+
+/* src: hsize_t, dst: uint8_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_hsize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint8_t */
+
+/* src: hsize_t, dst: uint16_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_hsize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint16_t */
+
+/* src: hsize_t, dst: uint32_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_hsize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint32_t */
+
+/* src: hsize_t, dst: uint64_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_hsize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: uint64_t */
+
+/* src: hsize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_hsize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: ptrdiff_t */
+
+/* src: hsize_t, dst: size_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_hsize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: size_t */
+
+/* src: hsize_t, dst: ssize_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_hsize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: ssize_t */
+
+/* src: hsize_t, dst: haddr_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_hsize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: haddr_t */
+
+/* src: hsize_t, dst: hssize_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_hsize_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: hssize_t */
+
+/* src: hsize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_hsize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hsize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for hssize_t */
+
+/* src: hssize_t, dst: unsigned */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_hssize_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: unsigned */
+
+/* src: hssize_t, dst: int */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_hssize_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: int */
+
+/* src: hssize_t, dst: uint8_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_hssize_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint8_t */
+
+/* src: hssize_t, dst: uint16_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_hssize_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint16_t */
+
+/* src: hssize_t, dst: uint32_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_hssize_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint32_t */
+
+/* src: hssize_t, dst: uint64_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_hssize_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: uint64_t */
+
+/* src: hssize_t, dst: ptrdiff_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_hssize_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: ptrdiff_t */
+
+/* src: hssize_t, dst: size_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_hssize_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: size_t */
+
+/* src: hssize_t, dst: ssize_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_hssize_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: ssize_t */
+
+/* src: hssize_t, dst: haddr_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_hssize_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: haddr_t */
+
+/* src: hssize_t, dst: hsize_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_hssize_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: hsize_t */
+
+/* src: hssize_t, dst: h5_stat_size_t */
+#if H5_SIZEOF_HSSIZE_T < H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_HSSIZE_T > H5_SIZEOF_H5_STAT_SIZE_T
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_HSSIZE_T == H5_SIZEOF_H5_STAT_SIZE_T */
+ #define ASSIGN_hssize_t_TO_h5_stat_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SIGNED_TO_UNSIGNED(dst, dsttype, src, srctype)
+#endif /* src: hssize_t dst: h5_stat_size_t */
+
+
+/* Assignment checks for h5_stat_size_t */
+
+/* src: h5_stat_size_t, dst: unsigned */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UNSIGNED
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UNSIGNED
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UNSIGNED */
+ #define ASSIGN_h5_stat_size_t_TO_unsigned(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: unsigned */
+
+/* src: h5_stat_size_t, dst: int */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_INT
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_INT
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_INT */
+ #define ASSIGN_h5_stat_size_t_TO_int(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: int */
+
+/* src: h5_stat_size_t, dst: uint8_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT8_T
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT8_T
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT8_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint8_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint8_t */
+
+/* src: h5_stat_size_t, dst: uint16_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT16_T
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT16_T
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT16_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint16_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint16_t */
+
+/* src: h5_stat_size_t, dst: uint32_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT32_T
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT32_T
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT32_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint32_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint32_t */
+
+/* src: h5_stat_size_t, dst: uint64_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_UINT64_T
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_UINT64_T
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_UINT64_T */
+ #define ASSIGN_h5_stat_size_t_TO_uint64_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: uint64_t */
+
+/* src: h5_stat_size_t, dst: ptrdiff_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_PTRDIFF_T
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_PTRDIFF_T */
+ #define ASSIGN_h5_stat_size_t_TO_ptrdiff_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: ptrdiff_t */
+
+/* src: h5_stat_size_t, dst: size_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_SIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_SIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_SIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_size_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: size_t */
+
+/* src: h5_stat_size_t, dst: ssize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_SSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_SSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_SSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_ssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: ssize_t */
+
+/* src: h5_stat_size_t, dst: haddr_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HADDR_T
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HADDR_T
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HADDR_T */
+ #define ASSIGN_h5_stat_size_t_TO_haddr_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: haddr_t */
+
+/* src: h5_stat_size_t, dst: hsize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_hsize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_SAME_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: hsize_t */
+
+/* src: h5_stat_size_t, dst: hssize_t */
+#if H5_SIZEOF_H5_STAT_SIZE_T < H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_LARGER_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#elif H5_SIZEOF_H5_STAT_SIZE_T > H5_SIZEOF_HSSIZE_T
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SMALLER_SIZE(dst, dsttype, src, srctype)
+#else /* H5_SIZEOF_H5_STAT_SIZE_T == H5_SIZEOF_HSSIZE_T */
+ #define ASSIGN_h5_stat_size_t_TO_hssize_t(dst, dsttype, src, srctype) \
+ ASSIGN_TO_SAME_SIZE_UNSIGNED_TO_SIGNED(dst, dsttype, src, srctype)
+#endif /* src: h5_stat_size_t dst: hssize_t */
+
+#endif /* H5overflow_H */
+
diff --git a/privatemodules/nc4/include/H5pubconf.h b/privatemodules/nc4/include/H5pubconf.h
new file mode 100644
index 0000000000000000000000000000000000000000..cfa33dbc227476fa038d4a55989b0ba343c11b7f
--- /dev/null
+++ b/privatemodules/nc4/include/H5pubconf.h
@@ -0,0 +1,724 @@
+/* src/H5config.h. Generated from H5config.h.in by configure. */
+/* src/H5config.h.in. Generated from configure.ac by autoheader. */
+
+/* Define if building universal (internal helper macro) */
+/* #undef H5_AC_APPLE_UNIVERSAL_BUILD */
+
+/* Define if your system generates wrong code for log2 routine. */
+/* #undef H5_BAD_LOG2_CODE_GENERATED */
+
+/* Define if the memory buffers being written to disk should be cleared before
+ writing. */
+#define H5_CLEAR_MEMORY 1
+
+/* Define if your system can handle converting denormalized floating-point
+ values. */
+#define H5_CONVERT_DENORMAL_FLOAT 1
+
+/* Define if C++ compiler recognizes offsetof */
+/* #undef H5_CXX_HAVE_OFFSETOF */
+
+/* Define the default plugins path to compile */
+#define H5_DEFAULT_PLUGINDIR "/usr/local/hdf5/lib/plugin"
+
+/* Define the default virtual file driver to compile */
+#define H5_DEFAULT_VFD H5FD_SEC2
+
+/* Define if `dev_t' is a scalar */
+#define H5_DEV_T_IS_SCALAR 1
+
+/* Define to dummy `main' function (if any) required to link to the Fortran
+ libraries. */
+/* #undef H5_FC_DUMMY_MAIN */
+
+/* Define if F77 and FC dummy `main' functions are identical. */
+/* #undef H5_FC_DUMMY_MAIN_EQ_F77 */
+
+/* Define to a macro mangling the given C identifier (in lower and upper
+ case), which must not contain underscores, for linking with Fortran. */
+/* #undef H5_FC_FUNC */
+
+/* As FC_FUNC, but for C identifiers containing underscores. */
+/* #undef H5_FC_FUNC_ */
+
+/* Define if your system can handle overflow converting floating-point to
+ integer values. */
+#define H5_FP_TO_INTEGER_OVERFLOW_WORKS 1
+
+/* Define if your system roundup accurately converting floating-point to
+ unsigned long long values. */
+#define H5_FP_TO_ULLONG_ACCURATE 1
+
+/* Define if your system has right maximum convert floating-point to unsigned
+ long long values. */
+#define H5_FP_TO_ULLONG_RIGHT_MAXIMUM 1
+
+/* Define if gettimeofday() populates the tz pointer passed in */
+#define H5_GETTIMEOFDAY_GIVES_TZ 1
+
+/* Define to 1 if you have the `alarm' function. */
+#define H5_HAVE_ALARM 1
+
+/* Define if the __attribute__(()) extension is present */
+#define H5_HAVE_ATTRIBUTE 1
+
+/* Define to 1 if you have the `BSDgettimeofday' function. */
+/* #undef H5_HAVE_BSDGETTIMEOFDAY */
+
+/* Define if the compiler understands C99 designated initialization of structs
+ and unions */
+#define H5_HAVE_C99_DESIGNATED_INITIALIZER 1
+
+/* Define if the compiler understands the __func__ keyword */
+#define H5_HAVE_C99_FUNC 1
+
+/* Define to 1 if you have the `clock_gettime' function. */
+#define H5_HAVE_CLOCK_GETTIME 1
+
+/* Define if the function stack tracing code is to be compiled in */
+/* #undef H5_HAVE_CODESTACK */
+
+/* Define if Darwin or Mac OS X */
+/* #undef H5_HAVE_DARWIN */
+
+/* Define to 1 if you have the declaration of `tzname', and to 0 if you don't.
+ */
+/* #undef H5_HAVE_DECL_TZNAME */
+
+/* Define to 1 if you have the `difftime' function. */
+#define H5_HAVE_DIFFTIME 1
+
+/* Define if the direct I/O virtual file driver should be compiled */
+/* #undef H5_HAVE_DIRECT */
+
+/* Define to 1 if you have the <dirent.h> header file. */
+#define H5_HAVE_DIRENT_H 1
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+#define H5_HAVE_DLFCN_H 1
+
+/* Define to 1 if you have the <dmalloc.h> header file. */
+/* #undef H5_HAVE_DMALLOC_H */
+
+/* Define if library information should be embedded in the executables */
+#define H5_HAVE_EMBEDDED_LIBINFO 1
+
+/* Define to 1 if you have the <features.h> header file. */
+#define H5_HAVE_FEATURES_H 1
+
+/* Define if support for deflate (zlib) filter is enabled */
+#define H5_HAVE_FILTER_DEFLATE 1
+
+/* Define if support for Fletcher32 checksum is enabled */
+#define H5_HAVE_FILTER_FLETCHER32 1
+
+/* Define if support for nbit filter is enabled */
+#define H5_HAVE_FILTER_NBIT 1
+
+/* Define if support for scaleoffset filter is enabled */
+#define H5_HAVE_FILTER_SCALEOFFSET 1
+
+/* Define if support for shuffle filter is enabled */
+#define H5_HAVE_FILTER_SHUFFLE 1
+
+/* Define if support for szip filter is enabled */
+/* #undef H5_HAVE_FILTER_SZIP */
+
+/* Define to 1 if you have the `fork' function. */
+#define H5_HAVE_FORK 1
+
+/* Define to 1 if you have the `frexpf' function. */
+#define H5_HAVE_FREXPF 1
+
+/* Define to 1 if you have the `frexpl' function. */
+#define H5_HAVE_FREXPL 1
+
+/* Define to 1 if you have the `fseeko' function. */
+#define H5_HAVE_FSEEKO 1
+
+/* Define to 1 if you have the `fseeko64' function. */
+#define H5_HAVE_FSEEKO64 1
+
+/* Define to 1 if you have the `fstat64' function. */
+#define H5_HAVE_FSTAT64 1
+
+/* Define to 1 if you have the `ftello' function. */
+#define H5_HAVE_FTELLO 1
+
+/* Define to 1 if you have the `ftello64' function. */
+#define H5_HAVE_FTELLO64 1
+
+/* Define to 1 if you have the `ftruncate64' function. */
+#define H5_HAVE_FTRUNCATE64 1
+
+/* Define if the compiler understands the __FUNCTION__ keyword */
+#define H5_HAVE_FUNCTION 1
+
+/* Define to 1 if you have the `GetConsoleScreenBufferInfo' function. */
+/* #undef H5_HAVE_GETCONSOLESCREENBUFFERINFO */
+
+/* Define to 1 if you have the `gethostname' function. */
+#define H5_HAVE_GETHOSTNAME 1
+
+/* Define to 1 if you have the `getpwuid' function. */
+#define H5_HAVE_GETPWUID 1
+
+/* Define to 1 if you have the `getrusage' function. */
+#define H5_HAVE_GETRUSAGE 1
+
+/* Define to 1 if you have the `gettextinfo' function. */
+/* #undef H5_HAVE_GETTEXTINFO */
+
+/* Define to 1 if you have the `gettimeofday' function. */
+#define H5_HAVE_GETTIMEOFDAY 1
+
+/* Define to 1 if you have the `get_fpc_csr' function. */
+/* #undef H5_HAVE_GET_FPC_CSR */
+
+/* Define if library will contain instrumentation to detect correct
+ optimization operation */
+/* #undef H5_HAVE_INSTRUMENTED_LIBRARY */
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+#define H5_HAVE_INTTYPES_H 1
+
+/* Define to 1 if you have the `ioctl' function. */
+#define H5_HAVE_IOCTL 1
+
+/* Define to 1 if you have the <io.h> header file. */
+/* #undef H5_HAVE_IO_H */
+
+/* Define to 1 if you have the `dl' library (-ldl). */
+#define H5_HAVE_LIBDL 1
+
+/* Define to 1 if you have the `dmalloc' library (-ldmalloc). */
+/* #undef H5_HAVE_LIBDMALLOC */
+
+/* Define to 1 if you have the `lmpe' library (-llmpe). */
+/* #undef H5_HAVE_LIBLMPE */
+
+/* Define to 1 if you have the `m' library (-lm). */
+#define H5_HAVE_LIBM 1
+
+/* Define to 1 if you have the `mpe' library (-lmpe). */
+/* #undef H5_HAVE_LIBMPE */
+
+/* Define to 1 if you have the `mpi' library (-lmpi). */
+/* #undef H5_HAVE_LIBMPI */
+
+/* Define to 1 if you have the `mpich' library (-lmpich). */
+/* #undef H5_HAVE_LIBMPICH */
+
+/* Define to 1 if you have the `mpio' library (-lmpio). */
+/* #undef H5_HAVE_LIBMPIO */
+
+/* Define to 1 if you have the `nsl' library (-lnsl). */
+/* #undef H5_HAVE_LIBNSL */
+
+/* Define to 1 if you have the `pthread' library (-lpthread). */
+/* #undef H5_HAVE_LIBPTHREAD */
+
+/* Define to 1 if you have the `socket' library (-lsocket). */
+/* #undef H5_HAVE_LIBSOCKET */
+
+/* Define to 1 if you have the `sz' library (-lsz). */
+/* #undef H5_HAVE_LIBSZ */
+
+/* Define to 1 if you have the `ws2_32' library (-lws2_32). */
+/* #undef H5_HAVE_LIBWS2_32 */
+
+/* Define to 1 if you have the `z' library (-lz). */
+#define H5_HAVE_LIBZ 1
+
+/* Define to 1 if you have the `longjmp' function. */
+#define H5_HAVE_LONGJMP 1
+
+/* Define to 1 if you have the `lseek64' function. */
+#define H5_HAVE_LSEEK64 1
+
+/* Define to 1 if you have the `lstat' function. */
+#define H5_HAVE_LSTAT 1
+
+/* Define to 1 if you have the <mach/mach_time.h> header file. */
+/* #undef H5_HAVE_MACH_MACH_TIME_H */
+
+/* Define to 1 if you have the <memory.h> header file. */
+#define H5_HAVE_MEMORY_H 1
+
+/* Define if we have MPE support */
+/* #undef H5_HAVE_MPE */
+
+/* Define to 1 if you have the <mpe.h> header file. */
+/* #undef H5_HAVE_MPE_H */
+
+/* Define if MPI_File_get_size works correctly */
+/* #undef H5_HAVE_MPI_GET_SIZE */
+
+/* Define if `MPI_Comm_c2f' and `MPI_Comm_f2c' exists */
+/* #undef H5_HAVE_MPI_MULTI_LANG_Comm */
+
+/* Define if `MPI_Info_c2f' and `MPI_Info_f2c' exists */
+/* #undef H5_HAVE_MPI_MULTI_LANG_Info */
+
+/* Define if we have parallel support */
+/* #undef H5_HAVE_PARALLEL */
+
+/* Define to 1 if you have the <pthread.h> header file. */
+/* #undef H5_HAVE_PTHREAD_H */
+
+/* Define to 1 if you have the `random' function. */
+#define H5_HAVE_RANDOM 1
+
+/* Define to 1 if you have the `rand_r' function. */
+#define H5_HAVE_RAND_R 1
+
+/* Define to 1 if you have the `setjmp' function. */
+#define H5_HAVE_SETJMP 1
+
+/* Define to 1 if you have the <setjmp.h> header file. */
+#define H5_HAVE_SETJMP_H 1
+
+/* Define to 1 if you have the `setsysinfo' function. */
+/* #undef H5_HAVE_SETSYSINFO */
+
+/* Define to 1 if you have the `siglongjmp' function. */
+#define H5_HAVE_SIGLONGJMP 1
+
+/* Define to 1 if you have the `signal' function. */
+#define H5_HAVE_SIGNAL 1
+
+/* Define to 1 if you have the `sigprocmask' function. */
+#define H5_HAVE_SIGPROCMASK 1
+
+/* Define to 1 if you have the `sigsetjmp' function. */
+/* #undef H5_HAVE_SIGSETJMP */
+
+/* Define to 1 if you have the `snprintf' function. */
+#define H5_HAVE_SNPRINTF 1
+
+/* Define to 1 if you have the `srandom' function. */
+#define H5_HAVE_SRANDOM 1
+
+/* Define to 1 if you have the `stat64' function. */
+#define H5_HAVE_STAT64 1
+
+/* Define if `struct stat' has the `st_blocks' field */
+#define H5_HAVE_STAT_ST_BLOCKS 1
+
+/* Define to 1 if you have the <stddef.h> header file. */
+#define H5_HAVE_STDDEF_H 1
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#define H5_HAVE_STDINT_H 1
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#define H5_HAVE_STDLIB_H 1
+
+/* Define to 1 if you have the `strdup' function. */
+#define H5_HAVE_STRDUP 1
+
+/* Define to 1 if you have the <strings.h> header file. */
+#define H5_HAVE_STRINGS_H 1
+
+/* Define to 1 if you have the <string.h> header file. */
+#define H5_HAVE_STRING_H 1
+
+/* Define if `struct text_info' is defined */
+/* #undef H5_HAVE_STRUCT_TEXT_INFO */
+
+/* Define if `struct timezone' is defined */
+#define H5_HAVE_STRUCT_TIMEZONE 1
+
+/* Define to 1 if `tm_zone' is a member of `struct tm'. */
+#define H5_HAVE_STRUCT_TM_TM_ZONE 1
+
+/* Define if `struct videoconfig' is defined */
+/* #undef H5_HAVE_STRUCT_VIDEOCONFIG */
+
+/* Define to 1 if you have the `symlink' function. */
+#define H5_HAVE_SYMLINK 1
+
+/* Define to 1 if you have the `system' function. */
+#define H5_HAVE_SYSTEM 1
+
+/* Define to 1 if you have the <sys/fpu.h> header file. */
+/* #undef H5_HAVE_SYS_FPU_H */
+
+/* Define to 1 if you have the <sys/ioctl.h> header file. */
+#define H5_HAVE_SYS_IOCTL_H 1
+
+/* Define to 1 if you have the <sys/proc.h> header file. */
+/* #undef H5_HAVE_SYS_PROC_H */
+
+/* Define to 1 if you have the <sys/resource.h> header file. */
+#define H5_HAVE_SYS_RESOURCE_H 1
+
+/* Define to 1 if you have the <sys/socket.h> header file. */
+#define H5_HAVE_SYS_SOCKET_H 1
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#define H5_HAVE_SYS_STAT_H 1
+
+/* Define to 1 if you have the <sys/sysinfo.h> header file. */
+/* #undef H5_HAVE_SYS_SYSINFO_H */
+
+/* Define to 1 if you have the <sys/timeb.h> header file. */
+#define H5_HAVE_SYS_TIMEB_H 1
+
+/* Define to 1 if you have the <sys/time.h> header file. */
+#define H5_HAVE_SYS_TIME_H 1
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#define H5_HAVE_SYS_TYPES_H 1
+
+/* Define to 1 if you have the <szlib.h> header file. */
+/* #undef H5_HAVE_SZLIB_H */
+
+/* Define if we have thread safe support */
+/* #undef H5_HAVE_THREADSAFE */
+
+/* Define if `timezone' is a global variable */
+/* #undef H5_HAVE_TIMEZONE */
+
+/* Define if the ioctl TIOCGETD is defined */
+#define H5_HAVE_TIOCGETD 1
+
+/* Define if the ioctl TIOGWINSZ is defined */
+#define H5_HAVE_TIOCGWINSZ 1
+
+/* Define to 1 if you have the `tmpfile' function. */
+#define H5_HAVE_TMPFILE 1
+
+/* Define if `tm_gmtoff' is a member of `struct tm' */
+#define H5_HAVE_TM_GMTOFF 1
+
+/* Define to 1 if your `struct tm' has `tm_zone'. Deprecated, use
+ `HAVE_STRUCT_TM_TM_ZONE' instead. */
+#define H5_HAVE_TM_ZONE 1
+
+/* Define to 1 if you don't have `tm_zone' but do have the external array
+ `tzname'. */
+/* #undef H5_HAVE_TZNAME */
+
+/* Define to 1 if you have the <unistd.h> header file. */
+#define H5_HAVE_UNISTD_H 1
+
+/* Define to 1 if you have the `vasprintf' function. */
+#define H5_HAVE_VASPRINTF 1
+
+/* Define to 1 if you have the `vsnprintf' function. */
+#define H5_HAVE_VSNPRINTF 1
+
+/* Define to 1 if you have the `waitpid' function. */
+#define H5_HAVE_WAITPID 1
+
+/* Define if your system has window style path name. */
+/* #undef H5_HAVE_WINDOW_PATH */
+
+/* Define to 1 if you have the <winsock2.h> header file. */
+/* #undef H5_HAVE_WINSOCK2_H */
+
+/* Define to 1 if you have the <zlib.h> header file. */
+#define H5_HAVE_ZLIB_H 1
+
+/* Define to 1 if you have the `_getvideoconfig' function. */
+/* #undef H5_HAVE__GETVIDEOCONFIG */
+
+/* Define to 1 if you have the `_scrsize' function. */
+/* #undef H5_HAVE__SCRSIZE */
+
+/* Define if `__tm_gmtoff' is a member of `struct tm' */
+/* #undef H5_HAVE___TM_GMTOFF */
+
+/* Define if your system can't handle converting floating-point values to long
+ long. */
+/* #undef H5_HW_FP_TO_LLONG_NOT_WORKS */
+
+/* Define if HDF5's high-level library headers should be included in hdf5.h */
+#define H5_INCLUDE_HL 1
+
+/* Define if your system can accurately convert from integers to long double
+ values. */
+#define H5_INTEGER_TO_LDOUBLE_ACCURATE 1
+
+/* Define if your system can convert long double to integers accurately. */
+#define H5_LDOUBLE_TO_INTEGER_ACCURATE 1
+
+/* Define if your system can convert from long double to integer values. */
+#define H5_LDOUBLE_TO_INTEGER_WORKS 1
+
+/* Define if your system can convert long double to (unsigned) long long
+ values correctly. */
+#define H5_LDOUBLE_TO_LLONG_ACCURATE 1
+
+/* Define if your system converts long double to (unsigned) long values with
+ special algorithm. */
+/* #undef H5_LDOUBLE_TO_LONG_SPECIAL */
+
+/* Define if your system can convert long double to unsigned int values
+ correctly. */
+#define H5_LDOUBLE_TO_UINT_ACCURATE 1
+
+/* Define if your system can compile long long to floating-point casts. */
+#define H5_LLONG_TO_FP_CAST_WORKS 1
+
+/* Define if your system can convert (unsigned) long long to long double
+ values correctly. */
+#define H5_LLONG_TO_LDOUBLE_CORRECT 1
+
+/* Define if your system can convert (unsigned) long to long double values
+ with special algorithm. */
+/* #undef H5_LONG_TO_LDOUBLE_SPECIAL */
+
+/* Define to the sub-directory in which libtool stores uninstalled libraries.
+ */
+#define H5_LT_OBJDIR ".libs/"
+
+/* Define if the metadata trace file code is to be compiled in */
+/* #undef H5_METADATA_TRACE_FILE */
+
+/* Define if your system's `MPI_File_set_size' function works for files over
+ 2GB. */
+/* #undef H5_MPI_FILE_SET_SIZE_BIG */
+
+/* Define if we can violate pointer alignment restrictions */
+#define H5_NO_ALIGNMENT_RESTRICTIONS 1
+
+/* Define if deprecated public API symbols are disabled */
+/* #undef H5_NO_DEPRECATED_SYMBOLS */
+
+/* Define if shared writing must be disabled (CodeWarrior only) */
+/* #undef H5_NO_SHARED_WRITING */
+
+/* Name of package */
+#define H5_PACKAGE "hdf5"
+
+/* Define to the address where bug reports for this package should be sent. */
+#define H5_PACKAGE_BUGREPORT "help@hdfgroup.org"
+
+/* Define to the full name of this package. */
+#define H5_PACKAGE_NAME "HDF5"
+
+/* Define to the full name and version of this package. */
+#define H5_PACKAGE_STRING "HDF5 1.8.13"
+
+/* Define to the one symbol short name of this package. */
+#define H5_PACKAGE_TARNAME "hdf5"
+
+/* Define to the home page for this package. */
+#define H5_PACKAGE_URL ""
+
+/* Define to the version of this package. */
+#define H5_PACKAGE_VERSION "1.8.13"
+
+/* Width for printf() for type `long long' or `__int64', use `ll' */
+#define H5_PRINTF_LL_WIDTH "l"
+
+/* The size of `char', as computed by sizeof. */
+#define H5_SIZEOF_CHAR 1
+
+/* The size of `double', as computed by sizeof. */
+#define H5_SIZEOF_DOUBLE 8
+
+/* The size of `float', as computed by sizeof. */
+#define H5_SIZEOF_FLOAT 4
+
+/* The size of `int', as computed by sizeof. */
+#define H5_SIZEOF_INT 4
+
+/* The size of `int16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT16_T 2
+
+/* The size of `int32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT32_T 4
+
+/* The size of `int64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT64_T 8
+
+/* The size of `int8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT8_T 1
+
+/* The size of `int_fast16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST16_T 8
+
+/* The size of `int_fast32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST32_T 8
+
+/* The size of `int_fast64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST64_T 8
+
+/* The size of `int_fast8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_FAST8_T 1
+
+/* The size of `int_least16_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST16_T 2
+
+/* The size of `int_least32_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST32_T 4
+
+/* The size of `int_least64_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST64_T 8
+
+/* The size of `int_least8_t', as computed by sizeof. */
+#define H5_SIZEOF_INT_LEAST8_T 1
+
+/* The size of `long', as computed by sizeof. */
+#define H5_SIZEOF_LONG 8
+
+/* The size of `long double', as computed by sizeof. */
+#define H5_SIZEOF_LONG_DOUBLE 16
+
+/* The size of `long long', as computed by sizeof. */
+#define H5_SIZEOF_LONG_LONG 8
+
+/* The size of `off64_t', as computed by sizeof. */
+#define H5_SIZEOF_OFF64_T 8
+
+/* The size of `off_t', as computed by sizeof. */
+#define H5_SIZEOF_OFF_T 8
+
+/* The size of `ptrdiff_t', as computed by sizeof. */
+#define H5_SIZEOF_PTRDIFF_T 8
+
+/* The size of `short', as computed by sizeof. */
+#define H5_SIZEOF_SHORT 2
+
+/* The size of `size_t', as computed by sizeof. */
+#define H5_SIZEOF_SIZE_T 8
+
+/* The size of `ssize_t', as computed by sizeof. */
+#define H5_SIZEOF_SSIZE_T 8
+
+/* The size of `uint16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT16_T 2
+
+/* The size of `uint32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT32_T 4
+
+/* The size of `uint64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT64_T 8
+
+/* The size of `uint8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT8_T 1
+
+/* The size of `uint_fast16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST16_T 8
+
+/* The size of `uint_fast32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST32_T 8
+
+/* The size of `uint_fast64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST64_T 8
+
+/* The size of `uint_fast8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_FAST8_T 1
+
+/* The size of `uint_least16_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST16_T 2
+
+/* The size of `uint_least32_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST32_T 4
+
+/* The size of `uint_least64_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST64_T 8
+
+/* The size of `uint_least8_t', as computed by sizeof. */
+#define H5_SIZEOF_UINT_LEAST8_T 1
+
+/* The size of `unsigned', as computed by sizeof. */
+#define H5_SIZEOF_UNSIGNED 4
+
+/* The size of `__int64', as computed by sizeof. */
+#define H5_SIZEOF___INT64 0
+
+/* Define to 1 if you have the ANSI C header files. */
+#define H5_STDC_HEADERS 1
+
+/* Define if strict file format checks are enabled */
+/* #undef H5_STRICT_FORMAT_CHECKS */
+
+/* Define if your system supports pthread_attr_setscope(&attribute,
+ PTHREAD_SCOPE_SYSTEM) call. */
+#define H5_SYSTEM_SCOPE_THREADS 1
+
+/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
+#define H5_TIME_WITH_SYS_TIME 1
+
+/* Define to 1 if your <sys/time.h> declares `struct tm'. */
+/* #undef H5_TM_IN_SYS_TIME */
+
+/* Define if your system can compile unsigned long long to floating-point
+ casts. */
+#define H5_ULLONG_TO_FP_CAST_WORKS 1
+
+/* Define if your system can convert unsigned long long to long double with
+ correct precision. */
+#define H5_ULLONG_TO_LDOUBLE_PRECISION 1
+
+/* Define if your system accurately converting unsigned long to float values.
+ */
+#define H5_ULONG_TO_FLOAT_ACCURATE 1
+
+/* Define if your system can accurately convert unsigned (long) long values to
+ floating-point values. */
+#define H5_ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1
+
+/* Define using v1.6 public API symbols by default */
+/* #undef H5_USE_16_API_DEFAULT */
+
+/* Define if a memory checking tool will be used on the library, to cause
+ library to be very picky about memory operations and also disable the
+ internal free list manager code. */
+/* #undef H5_USING_MEMCHECKER */
+
+/* Version number of package */
+#define H5_VERSION "1.8.13"
+
+/* Define if vsnprintf() returns the correct value for formatted strings that
+ don't fit into size allowed */
+#define H5_VSNPRINTF_WORKS 1
+
+/* Data accuracy is prefered to speed during data conversions */
+#define H5_WANT_DATA_ACCURACY 1
+
+/* Check exception handling functions during data conversions */
+#define H5_WANT_DCONV_EXCEPTION 1
+
+/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
+ significant byte first (like Motorola and SPARC, unlike Intel). */
+#if defined AC_APPLE_UNIVERSAL_BUILD
+# if defined __BIG_ENDIAN__
+# define WORDS_BIGENDIAN 1
+# endif
+#else
+# ifndef WORDS_BIGENDIAN
+/* # undef WORDS_BIGENDIAN */
+# endif
+#endif
+
+/* Number of bits in a file offset, on hosts where this is settable. */
+/* #undef H5__FILE_OFFSET_BITS */
+
+/* Define for large files, on AIX-style hosts. */
+/* #undef H5__LARGE_FILES */
+
+/* Define to empty if `const' does not conform to ANSI C. */
+/* #undef H5_const */
+
+/* Define to `__inline__' or `__inline' if that's what the C compiler
+ calls it, or to nothing if 'inline' is not supported under any name. */
+#ifndef __cplusplus
+#define H5_inline __inline__
+#endif
+
+/* Define to `long int' if <sys/types.h> does not define. */
+/* #undef H5_off_t */
+
+/* Define to `long' if <sys/types.h> does not define. */
+/* #undef H5_ptrdiff_t */
+
+/* Define to `unsigned long' if <sys/types.h> does not define. */
+/* #undef H5_size_t */
+
+/* Define to `long' if <sys/types.h> does not define. */
+/* #undef H5_ssize_t */
diff --git a/privatemodules/nc4/include/H5public.h b/privatemodules/nc4/include/H5public.h
new file mode 100644
index 0000000000000000000000000000000000000000..aaf0d749847fc8628e2f83328cbe7a8e864203b4
--- /dev/null
+++ b/privatemodules/nc4/include/H5public.h
@@ -0,0 +1,343 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This file contains public declarations for the HDF5 module.
+ */
+#ifndef _H5public_H
+#define _H5public_H
+
+/* Include files for public use... */
+/*
+ * Since H5pubconf.h is a generated header file, it is messy to try
+ * to put a #ifndef _H5pubconf_H ... #endif guard in it.
+ * HDF5 has set an internal rule that it is being included here.
+ * Source files should NOT include H5pubconf.h directly but include
+ * it via H5public.h. The #ifndef _H5public_H guard above would
+ * prevent repeated include.
+ */
+#include "H5pubconf.h" /*from configure */
+
+/* API Version macro wrapper definitions */
+#include "H5version.h"
+
+#ifdef H5_HAVE_FEATURES_H
+#include <features.h> /*for setting POSIX, BSD, etc. compatibility */
+#endif
+#ifdef H5_HAVE_SYS_TYPES_H
+#include <sys/types.h>
+#endif
+#ifdef H5_STDC_HEADERS
+# include <limits.h> /*for H5T_NATIVE_CHAR defn in H5Tpublic.h */
+#endif
+#ifndef __cplusplus
+# ifdef H5_HAVE_STDINT_H
+# include <stdint.h> /*for C9x types */
+# endif
+#else
+# ifdef H5_HAVE_STDINT_H_CXX
+# include <stdint.h> /*for C9x types when include from C++ */
+# endif
+#endif
+#ifdef H5_HAVE_INTTYPES_H
+# include <inttypes.h> /* For uint64_t on some platforms */
+#endif
+#ifdef H5_HAVE_STDDEF_H
+# include <stddef.h>
+#endif
+#ifdef H5_HAVE_PARALLEL
+# include <mpi.h>
+#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */
+# include <mpio.h>
+#endif
+#endif
+
+
+/* Include the Windows API adapter header early */
+#include "H5api_adpt.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+/* Macros for enabling/disabling particular GCC warnings */
+/* (see the following web-sites for more info:
+ * http://www.dbp-consulting.com/tutorials/SuppressingGCCWarnings.html
+ * http://gcc.gnu.org/onlinedocs/gcc/Diagnostic-Pragmas.html#Diagnostic-Pragmas
+ */
+/* These pragmas are only implemented usefully in gcc 4.6+ */
+#if ((__GNUC__ * 100) + __GNUC_MINOR__) >= 406
+ #define H5_GCC_DIAG_STR(s) #s
+ #define H5_GCC_DIAG_JOINSTR(x,y) H5_GCC_DIAG_STR(x ## y)
+ #define H5_GCC_DIAG_DO_PRAGMA(x) _Pragma (#x)
+ #define H5_GCC_DIAG_PRAGMA(x) H5_GCC_DIAG_DO_PRAGMA(GCC diagnostic x)
+
+ #define H5_GCC_DIAG_OFF(x) H5_GCC_DIAG_PRAGMA(push) H5_GCC_DIAG_PRAGMA(ignored H5_GCC_DIAG_JOINSTR(-W,x))
+ #define H5_GCC_DIAG_ON(x) H5_GCC_DIAG_PRAGMA(pop)
+#else
+ #define H5_GCC_DIAG_OFF(x)
+ #define H5_GCC_DIAG_ON(x)
+#endif
+
+/* Version numbers */
+#define H5_VERS_MAJOR 1 /* For major interface/format changes */
+#define H5_VERS_MINOR 8 /* For minor interface/format changes */
+#define H5_VERS_RELEASE 13 /* For tweaks, bug-fixes, or development */
+#define H5_VERS_SUBRELEASE "" /* For pre-releases like snap0 */
+ /* Empty string for real releases. */
+#define H5_VERS_INFO "HDF5 library version: 1.8.13" /* Full version string */
+
+#define H5check() H5check_version(H5_VERS_MAJOR,H5_VERS_MINOR, \
+ H5_VERS_RELEASE)
+
+/* macros for comparing the version */
+#define H5_VERSION_GE(Maj,Min,Rel) \
+ (((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR==Min) && (H5_VERS_RELEASE>=Rel)) || \
+ ((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR>Min)) || \
+ (H5_VERS_MAJOR>Maj))
+
+#define H5_VERSION_LE(Maj,Min,Rel) \
+ (((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR==Min) && (H5_VERS_RELEASE<=Rel)) || \
+ ((H5_VERS_MAJOR==Maj) && (H5_VERS_MINOR<Min)) || \
+ (H5_VERS_MAJOR<Maj))
+
+/*
+ * Status return values. Failed integer functions in HDF5 result almost
+ * always in a negative value (unsigned failing functions sometimes return
+ * zero for failure) while successfull return is non-negative (often zero).
+ * The negative failure value is most commonly -1, but don't bet on it. The
+ * proper way to detect failure is something like:
+ *
+ * if((dset = H5Dopen2(file, name)) < 0)
+ * fprintf(stderr, "unable to open the requested dataset\n");
+ */
+typedef int herr_t;
+
+
+/*
+ * Boolean type. Successful return values are zero (false) or positive
+ * (true). The typical true value is 1 but don't bet on it. Boolean
+ * functions cannot fail. Functions that return `htri_t' however return zero
+ * (false), positive (true), or negative (failure). The proper way to test
+ * for truth from a htri_t function is:
+ *
+ * if ((retval = H5Tcommitted(type))>0) {
+ * printf("data type is committed\n");
+ * } else if (!retval) {
+ * printf("data type is not committed\n");
+ * } else {
+ * printf("error determining whether data type is committed\n");
+ * }
+ */
+typedef unsigned int hbool_t;
+typedef int htri_t;
+
+/* Define the ssize_t type if it not is defined */
+#if H5_SIZEOF_SSIZE_T==0
+/* Undefine this size, we will re-define it in one of the sections below */
+#undef H5_SIZEOF_SSIZE_T
+#if H5_SIZEOF_SIZE_T==H5_SIZEOF_INT
+typedef int ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_INT
+#elif H5_SIZEOF_SIZE_T==H5_SIZEOF_LONG
+typedef long ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_SIZE_T==H5_SIZEOF_LONG_LONG
+typedef long long ssize_t;
+# define H5_SIZEOF_SSIZE_T H5_SIZEOF_LONG_LONG
+#else /* Can't find matching type for ssize_t */
+# error "nothing appropriate for ssize_t"
+#endif
+#endif
+
+/*
+ * The sizes of file objects have their own types defined here, use a 64-bit
+ * type.
+ */
+#if H5_SIZEOF_LONG_LONG >= 8
+H5_GCC_DIAG_OFF(long-long)
+typedef unsigned long long hsize_t;
+typedef signed long long hssize_t;
+H5_GCC_DIAG_ON(long-long)
+# define H5_SIZEOF_HSIZE_T H5_SIZEOF_LONG_LONG
+# define H5_SIZEOF_HSSIZE_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for hsize_t"
+#endif
+
+/*
+ * File addresses have their own types.
+ */
+#if H5_SIZEOF_INT64_T>=8
+ typedef uint64_t haddr_t;
+# define HADDR_UNDEF ((haddr_t)(int64_t)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_INT64_T
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_LONG_LONG_INT
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_INT>=8
+ typedef unsigned haddr_t;
+# define HADDR_UNDEF ((haddr_t)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_INT
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_UNSIGNED
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_LONG>=8
+ typedef unsigned long haddr_t;
+# define HADDR_UNDEF ((haddr_t)(long)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_LONG
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_UNSIGNED_LONG
+# endif /* H5_HAVE_PARALLEL */
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef unsigned long long haddr_t;
+# define HADDR_UNDEF ((haddr_t)(long long)(-1))
+# define H5_SIZEOF_HADDR_T H5_SIZEOF_LONG_LONG
+# ifdef H5_HAVE_PARALLEL
+# define HADDR_AS_MPI_TYPE MPI_LONG_LONG_INT
+# endif /* H5_HAVE_PARALLEL */
+#else
+# error "nothing appropriate for haddr_t"
+#endif
+#if H5_SIZEOF_HADDR_T ==H5_SIZEOF_INT
+# define H5_PRINTF_HADDR_FMT "%u"
+#elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG
+# define H5_PRINTF_HADDR_FMT "%lu"
+#elif H5_SIZEOF_HADDR_T ==H5_SIZEOF_LONG_LONG
+# define H5_PRINTF_HADDR_FMT "%" H5_PRINTF_LL_WIDTH "u"
+#else
+# error "nothing appropriate for H5_PRINTF_HADDR_FMT"
+#endif
+#define HADDR_MAX (HADDR_UNDEF-1)
+
+/* uint32_t type is used for creation order field for messages. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_UINT32_T>=4
+#elif H5_SIZEOF_SHORT>=4
+ typedef short uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_SHORT
+#elif H5_SIZEOF_INT>=4
+ typedef unsigned int uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=4
+ typedef unsigned long uint32_t;
+# undef H5_SIZEOF_UINT32_T
+# define H5_SIZEOF_UINT32_T H5_SIZEOF_LONG
+#else
+# error "nothing appropriate for uint32_t"
+#endif
+
+/* int64_t type is used for creation order field for links. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_INT64_T>=8
+#elif H5_SIZEOF_INT>=8
+ typedef int int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=8
+ typedef long int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef long long int64_t;
+# undef H5_SIZEOF_INT64_T
+# define H5_SIZEOF_INT64_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for int64_t"
+#endif
+
+/* uint64_t type is used for fields for H5O_info_t. It may be
+ * defined in Posix.1g, otherwise it is defined here.
+ */
+#if H5_SIZEOF_UINT64_T>=8
+#elif H5_SIZEOF_INT>=8
+ typedef unsigned uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_INT
+#elif H5_SIZEOF_LONG>=8
+ typedef unsigned long uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_LONG
+#elif H5_SIZEOF_LONG_LONG>=8
+ typedef unsigned long long uint64_t;
+# undef H5_SIZEOF_UINT64_T
+# define H5_SIZEOF_UINT64_T H5_SIZEOF_LONG_LONG
+#else
+# error "nothing appropriate for uint64_t"
+#endif
+
+/* Default value for all property list classes */
+#define H5P_DEFAULT 0
+
+/* Common iteration orders */
+typedef enum {
+ H5_ITER_UNKNOWN = -1, /* Unknown order */
+ H5_ITER_INC, /* Increasing order */
+ H5_ITER_DEC, /* Decreasing order */
+ H5_ITER_NATIVE, /* No particular order, whatever is fastest */
+ H5_ITER_N /* Number of iteration orders */
+} H5_iter_order_t;
+
+/* Iteration callback values */
+/* (Actually, any postive value will cause the iterator to stop and pass back
+ * that positive value to the function that called the iterator)
+ */
+#define H5_ITER_ERROR (-1)
+#define H5_ITER_CONT (0)
+#define H5_ITER_STOP (1)
+
+/*
+ * The types of indices on links in groups/attributes on objects.
+ * Primarily used for "<do> <foo> by index" routines and for iterating over
+ * links in groups/attributes on objects.
+ */
+typedef enum H5_index_t {
+ H5_INDEX_UNKNOWN = -1, /* Unknown index type */
+ H5_INDEX_NAME, /* Index on names */
+ H5_INDEX_CRT_ORDER, /* Index on creation order */
+ H5_INDEX_N /* Number of indices defined */
+} H5_index_t;
+
+/*
+ * Storage info struct used by H5O_info_t and H5F_info_t
+ */
+typedef struct H5_ih_info_t {
+ hsize_t index_size; /* btree and/or list */
+ hsize_t heap_size;
+} H5_ih_info_t;
+
+/* Functions in H5.c */
+H5_DLL herr_t H5open(void);
+H5_DLL herr_t H5close(void);
+H5_DLL herr_t H5dont_atexit(void);
+H5_DLL herr_t H5garbage_collect(void);
+H5_DLL herr_t H5set_free_list_limits (int reg_global_lim, int reg_list_lim,
+ int arr_global_lim, int arr_list_lim, int blk_global_lim,
+ int blk_list_lim);
+H5_DLL herr_t H5get_libversion(unsigned *majnum, unsigned *minnum,
+ unsigned *relnum);
+H5_DLL herr_t H5check_version(unsigned majnum, unsigned minnum,
+ unsigned relnum);
+H5_DLL herr_t H5free_memory(void *mem);
+
+#ifdef __cplusplus
+}
+#endif
+#endif
+
diff --git a/privatemodules/nc4/include/H5version.h b/privatemodules/nc4/include/H5version.h
new file mode 100644
index 0000000000000000000000000000000000000000..58de2abafd097fe62acc19bf2799aa8a5011a90f
--- /dev/null
+++ b/privatemodules/nc4/include/H5version.h
@@ -0,0 +1,419 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* Generated automatically by bin/make_vers -- do not edit */
+/* Add new versioned symbols to H5vers.txt file */
+
+
+#ifndef _H5version_H
+#define _H5version_H
+
+/* Issue error if contradicting macros have been defined. */
+#if defined(H5_USE_16_API) && defined(H5_NO_DEPRECATED_SYMBOLS)
+#error "Can't choose old API versions when deprecated APIs are disabled"
+#endif /* defined(H5_USE_16_API) && defined(H5_NO_DEPRECATED_SYMBOLS) */
+
+
+/* If a particular "global" version of the library's interfaces is chosen,
+ * set the versions for the API symbols affected.
+ *
+ * Note: If an application has already chosen a particular version for an
+ * API symbol, the individual API version macro takes priority.
+ */
+#if defined(H5_USE_16_API_DEFAULT) && !defined(H5_USE_16_API)
+#define H5_USE_16_API 1
+#endif /* H5_USE_16_API_DEFAULT && !H5_USE_16_API */
+
+#ifdef H5_USE_16_API
+
+/*************/
+/* Functions */
+/*************/
+
+#if !defined(H5Acreate_vers)
+#define H5Acreate_vers 1
+#endif /* !defined(H5Acreate_vers) */
+
+#if !defined(H5Aiterate_vers)
+#define H5Aiterate_vers 1
+#endif /* !defined(H5Aiterate_vers) */
+
+#if !defined(H5Dcreate_vers)
+#define H5Dcreate_vers 1
+#endif /* !defined(H5Dcreate_vers) */
+
+#if !defined(H5Dopen_vers)
+#define H5Dopen_vers 1
+#endif /* !defined(H5Dopen_vers) */
+
+#if !defined(H5Eclear_vers)
+#define H5Eclear_vers 1
+#endif /* !defined(H5Eclear_vers) */
+
+#if !defined(H5Eget_auto_vers)
+#define H5Eget_auto_vers 1
+#endif /* !defined(H5Eget_auto_vers) */
+
+#if !defined(H5Eprint_vers)
+#define H5Eprint_vers 1
+#endif /* !defined(H5Eprint_vers) */
+
+#if !defined(H5Epush_vers)
+#define H5Epush_vers 1
+#endif /* !defined(H5Epush_vers) */
+
+#if !defined(H5Eset_auto_vers)
+#define H5Eset_auto_vers 1
+#endif /* !defined(H5Eset_auto_vers) */
+
+#if !defined(H5Ewalk_vers)
+#define H5Ewalk_vers 1
+#endif /* !defined(H5Ewalk_vers) */
+
+#if !defined(H5Gcreate_vers)
+#define H5Gcreate_vers 1
+#endif /* !defined(H5Gcreate_vers) */
+
+#if !defined(H5Gopen_vers)
+#define H5Gopen_vers 1
+#endif /* !defined(H5Gopen_vers) */
+
+#if !defined(H5Pget_filter_vers)
+#define H5Pget_filter_vers 1
+#endif /* !defined(H5Pget_filter_vers) */
+
+#if !defined(H5Pget_filter_by_id_vers)
+#define H5Pget_filter_by_id_vers 1
+#endif /* !defined(H5Pget_filter_by_id_vers) */
+
+#if !defined(H5Pinsert_vers)
+#define H5Pinsert_vers 1
+#endif /* !defined(H5Pinsert_vers) */
+
+#if !defined(H5Pregister_vers)
+#define H5Pregister_vers 1
+#endif /* !defined(H5Pregister_vers) */
+
+#if !defined(H5Rget_obj_type_vers)
+#define H5Rget_obj_type_vers 1
+#endif /* !defined(H5Rget_obj_type_vers) */
+
+#if !defined(H5Tarray_create_vers)
+#define H5Tarray_create_vers 1
+#endif /* !defined(H5Tarray_create_vers) */
+
+#if !defined(H5Tcommit_vers)
+#define H5Tcommit_vers 1
+#endif /* !defined(H5Tcommit_vers) */
+
+#if !defined(H5Tget_array_dims_vers)
+#define H5Tget_array_dims_vers 1
+#endif /* !defined(H5Tget_array_dims_vers) */
+
+#if !defined(H5Topen_vers)
+#define H5Topen_vers 1
+#endif /* !defined(H5Topen_vers) */
+
+/************/
+/* Typedefs */
+/************/
+
+#if !defined(H5E_auto_t_vers)
+#define H5E_auto_t_vers 1
+#endif /* !defined(H5E_auto_t_vers) */
+
+#if !defined(H5Z_class_t_vers)
+#define H5Z_class_t_vers 1
+#endif /* !defined(H5Z_class_t_vers) */
+
+#endif /* H5_USE_16_API */
+
+
+/* Choose the correct version of each API symbol, defaulting to the latest
+ * version of each. The "best" name for API parameters/data structures
+ * that have changed definitions is also set. An error is issued for
+ * specifying an invalid API version.
+ */
+
+/*************/
+/* Functions */
+/*************/
+
+#if !defined(H5Acreate_vers) || H5Acreate_vers == 2
+#ifndef H5Acreate_vers
+#define H5Acreate_vers 2
+#endif /* H5Acreate_vers */
+#define H5Acreate H5Acreate2
+#elif H5Acreate_vers == 1
+#define H5Acreate H5Acreate1
+#else /* H5Acreate_vers */
+#error "H5Acreate_vers set to invalid value"
+#endif /* H5Acreate_vers */
+
+#if !defined(H5Aiterate_vers) || H5Aiterate_vers == 2
+#ifndef H5Aiterate_vers
+#define H5Aiterate_vers 2
+#endif /* H5Aiterate_vers */
+#define H5Aiterate H5Aiterate2
+#define H5A_operator_t H5A_operator2_t
+#elif H5Aiterate_vers == 1
+#define H5Aiterate H5Aiterate1
+#define H5A_operator_t H5A_operator1_t
+#else /* H5Aiterate_vers */
+#error "H5Aiterate_vers set to invalid value"
+#endif /* H5Aiterate_vers */
+
+#if !defined(H5Dcreate_vers) || H5Dcreate_vers == 2
+#ifndef H5Dcreate_vers
+#define H5Dcreate_vers 2
+#endif /* H5Dcreate_vers */
+#define H5Dcreate H5Dcreate2
+#elif H5Dcreate_vers == 1
+#define H5Dcreate H5Dcreate1
+#else /* H5Dcreate_vers */
+#error "H5Dcreate_vers set to invalid value"
+#endif /* H5Dcreate_vers */
+
+#if !defined(H5Dopen_vers) || H5Dopen_vers == 2
+#ifndef H5Dopen_vers
+#define H5Dopen_vers 2
+#endif /* H5Dopen_vers */
+#define H5Dopen H5Dopen2
+#elif H5Dopen_vers == 1
+#define H5Dopen H5Dopen1
+#else /* H5Dopen_vers */
+#error "H5Dopen_vers set to invalid value"
+#endif /* H5Dopen_vers */
+
+#if !defined(H5Eclear_vers) || H5Eclear_vers == 2
+#ifndef H5Eclear_vers
+#define H5Eclear_vers 2
+#endif /* H5Eclear_vers */
+#define H5Eclear H5Eclear2
+#elif H5Eclear_vers == 1
+#define H5Eclear H5Eclear1
+#else /* H5Eclear_vers */
+#error "H5Eclear_vers set to invalid value"
+#endif /* H5Eclear_vers */
+
+#if !defined(H5Eget_auto_vers) || H5Eget_auto_vers == 2
+#ifndef H5Eget_auto_vers
+#define H5Eget_auto_vers 2
+#endif /* H5Eget_auto_vers */
+#define H5Eget_auto H5Eget_auto2
+#elif H5Eget_auto_vers == 1
+#define H5Eget_auto H5Eget_auto1
+#else /* H5Eget_auto_vers */
+#error "H5Eget_auto_vers set to invalid value"
+#endif /* H5Eget_auto_vers */
+
+#if !defined(H5Eprint_vers) || H5Eprint_vers == 2
+#ifndef H5Eprint_vers
+#define H5Eprint_vers 2
+#endif /* H5Eprint_vers */
+#define H5Eprint H5Eprint2
+#elif H5Eprint_vers == 1
+#define H5Eprint H5Eprint1
+#else /* H5Eprint_vers */
+#error "H5Eprint_vers set to invalid value"
+#endif /* H5Eprint_vers */
+
+#if !defined(H5Epush_vers) || H5Epush_vers == 2
+#ifndef H5Epush_vers
+#define H5Epush_vers 2
+#endif /* H5Epush_vers */
+#define H5Epush H5Epush2
+#elif H5Epush_vers == 1
+#define H5Epush H5Epush1
+#else /* H5Epush_vers */
+#error "H5Epush_vers set to invalid value"
+#endif /* H5Epush_vers */
+
+#if !defined(H5Eset_auto_vers) || H5Eset_auto_vers == 2
+#ifndef H5Eset_auto_vers
+#define H5Eset_auto_vers 2
+#endif /* H5Eset_auto_vers */
+#define H5Eset_auto H5Eset_auto2
+#elif H5Eset_auto_vers == 1
+#define H5Eset_auto H5Eset_auto1
+#else /* H5Eset_auto_vers */
+#error "H5Eset_auto_vers set to invalid value"
+#endif /* H5Eset_auto_vers */
+
+#if !defined(H5Ewalk_vers) || H5Ewalk_vers == 2
+#ifndef H5Ewalk_vers
+#define H5Ewalk_vers 2
+#endif /* H5Ewalk_vers */
+#define H5Ewalk H5Ewalk2
+#define H5E_error_t H5E_error2_t
+#define H5E_walk_t H5E_walk2_t
+#elif H5Ewalk_vers == 1
+#define H5Ewalk H5Ewalk1
+#define H5E_error_t H5E_error1_t
+#define H5E_walk_t H5E_walk1_t
+#else /* H5Ewalk_vers */
+#error "H5Ewalk_vers set to invalid value"
+#endif /* H5Ewalk_vers */
+
+#if !defined(H5Gcreate_vers) || H5Gcreate_vers == 2
+#ifndef H5Gcreate_vers
+#define H5Gcreate_vers 2
+#endif /* H5Gcreate_vers */
+#define H5Gcreate H5Gcreate2
+#elif H5Gcreate_vers == 1
+#define H5Gcreate H5Gcreate1
+#else /* H5Gcreate_vers */
+#error "H5Gcreate_vers set to invalid value"
+#endif /* H5Gcreate_vers */
+
+#if !defined(H5Gopen_vers) || H5Gopen_vers == 2
+#ifndef H5Gopen_vers
+#define H5Gopen_vers 2
+#endif /* H5Gopen_vers */
+#define H5Gopen H5Gopen2
+#elif H5Gopen_vers == 1
+#define H5Gopen H5Gopen1
+#else /* H5Gopen_vers */
+#error "H5Gopen_vers set to invalid value"
+#endif /* H5Gopen_vers */
+
+#if !defined(H5Pget_filter_vers) || H5Pget_filter_vers == 2
+#ifndef H5Pget_filter_vers
+#define H5Pget_filter_vers 2
+#endif /* H5Pget_filter_vers */
+#define H5Pget_filter H5Pget_filter2
+#elif H5Pget_filter_vers == 1
+#define H5Pget_filter H5Pget_filter1
+#else /* H5Pget_filter_vers */
+#error "H5Pget_filter_vers set to invalid value"
+#endif /* H5Pget_filter_vers */
+
+#if !defined(H5Pget_filter_by_id_vers) || H5Pget_filter_by_id_vers == 2
+#ifndef H5Pget_filter_by_id_vers
+#define H5Pget_filter_by_id_vers 2
+#endif /* H5Pget_filter_by_id_vers */
+#define H5Pget_filter_by_id H5Pget_filter_by_id2
+#elif H5Pget_filter_by_id_vers == 1
+#define H5Pget_filter_by_id H5Pget_filter_by_id1
+#else /* H5Pget_filter_by_id_vers */
+#error "H5Pget_filter_by_id_vers set to invalid value"
+#endif /* H5Pget_filter_by_id_vers */
+
+#if !defined(H5Pinsert_vers) || H5Pinsert_vers == 2
+#ifndef H5Pinsert_vers
+#define H5Pinsert_vers 2
+#endif /* H5Pinsert_vers */
+#define H5Pinsert H5Pinsert2
+#elif H5Pinsert_vers == 1
+#define H5Pinsert H5Pinsert1
+#else /* H5Pinsert_vers */
+#error "H5Pinsert_vers set to invalid value"
+#endif /* H5Pinsert_vers */
+
+#if !defined(H5Pregister_vers) || H5Pregister_vers == 2
+#ifndef H5Pregister_vers
+#define H5Pregister_vers 2
+#endif /* H5Pregister_vers */
+#define H5Pregister H5Pregister2
+#elif H5Pregister_vers == 1
+#define H5Pregister H5Pregister1
+#else /* H5Pregister_vers */
+#error "H5Pregister_vers set to invalid value"
+#endif /* H5Pregister_vers */
+
+#if !defined(H5Rget_obj_type_vers) || H5Rget_obj_type_vers == 2
+#ifndef H5Rget_obj_type_vers
+#define H5Rget_obj_type_vers 2
+#endif /* H5Rget_obj_type_vers */
+#define H5Rget_obj_type H5Rget_obj_type2
+#elif H5Rget_obj_type_vers == 1
+#define H5Rget_obj_type H5Rget_obj_type1
+#else /* H5Rget_obj_type_vers */
+#error "H5Rget_obj_type_vers set to invalid value"
+#endif /* H5Rget_obj_type_vers */
+
+#if !defined(H5Tarray_create_vers) || H5Tarray_create_vers == 2
+#ifndef H5Tarray_create_vers
+#define H5Tarray_create_vers 2
+#endif /* H5Tarray_create_vers */
+#define H5Tarray_create H5Tarray_create2
+#elif H5Tarray_create_vers == 1
+#define H5Tarray_create H5Tarray_create1
+#else /* H5Tarray_create_vers */
+#error "H5Tarray_create_vers set to invalid value"
+#endif /* H5Tarray_create_vers */
+
+#if !defined(H5Tcommit_vers) || H5Tcommit_vers == 2
+#ifndef H5Tcommit_vers
+#define H5Tcommit_vers 2
+#endif /* H5Tcommit_vers */
+#define H5Tcommit H5Tcommit2
+#elif H5Tcommit_vers == 1
+#define H5Tcommit H5Tcommit1
+#else /* H5Tcommit_vers */
+#error "H5Tcommit_vers set to invalid value"
+#endif /* H5Tcommit_vers */
+
+#if !defined(H5Tget_array_dims_vers) || H5Tget_array_dims_vers == 2
+#ifndef H5Tget_array_dims_vers
+#define H5Tget_array_dims_vers 2
+#endif /* H5Tget_array_dims_vers */
+#define H5Tget_array_dims H5Tget_array_dims2
+#elif H5Tget_array_dims_vers == 1
+#define H5Tget_array_dims H5Tget_array_dims1
+#else /* H5Tget_array_dims_vers */
+#error "H5Tget_array_dims_vers set to invalid value"
+#endif /* H5Tget_array_dims_vers */
+
+#if !defined(H5Topen_vers) || H5Topen_vers == 2
+#ifndef H5Topen_vers
+#define H5Topen_vers 2
+#endif /* H5Topen_vers */
+#define H5Topen H5Topen2
+#elif H5Topen_vers == 1
+#define H5Topen H5Topen1
+#else /* H5Topen_vers */
+#error "H5Topen_vers set to invalid value"
+#endif /* H5Topen_vers */
+
+/************/
+/* Typedefs */
+/************/
+
+#if !defined(H5E_auto_t_vers) || H5E_auto_t_vers == 2
+#ifndef H5E_auto_t_vers
+#define H5E_auto_t_vers 2
+#endif /* H5E_auto_t_vers */
+#define H5E_auto_t H5E_auto2_t
+#elif H5E_auto_t_vers == 1
+#define H5E_auto_t H5E_auto1_t
+#else /* H5E_auto_t_vers */
+#error "H5E_auto_t_vers set to invalid value"
+#endif /* H5E_auto_t_vers */
+
+
+#if !defined(H5Z_class_t_vers) || H5Z_class_t_vers == 2
+#ifndef H5Z_class_t_vers
+#define H5Z_class_t_vers 2
+#endif /* H5Z_class_t_vers */
+#define H5Z_class_t H5Z_class2_t
+#elif H5Z_class_t_vers == 1
+#define H5Z_class_t H5Z_class1_t
+#else /* H5Z_class_t_vers */
+#error "H5Z_class_t_vers set to invalid value"
+#endif /* H5Z_class_t_vers */
+
+#endif /* H5version_H */
+
diff --git a/privatemodules/nc4/include/hdf5.h b/privatemodules/nc4/include/hdf5.h
new file mode 100644
index 0000000000000000000000000000000000000000..ef150630f5f6fa8982267b531b9bbaab57104acd
--- /dev/null
+++ b/privatemodules/nc4/include/hdf5.h
@@ -0,0 +1,55 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This is the main public HDF5 include file. Put further information in
+ * a particular header file and include that here, don't fill this file with
+ * lots of gunk...
+ */
+#ifndef _HDF5_H
+#define _HDF5_H
+
+#include "H5public.h"
+#include "H5Apublic.h" /* Attributes */
+#include "H5ACpublic.h" /* Metadata cache */
+#include "H5Dpublic.h" /* Datasets */
+#include "H5Epublic.h" /* Errors */
+#include "H5Fpublic.h" /* Files */
+#include "H5FDpublic.h" /* File drivers */
+#include "H5Gpublic.h" /* Groups */
+#include "H5Ipublic.h" /* ID management */
+#include "H5Lpublic.h" /* Links */
+#include "H5MMpublic.h" /* Memory management */
+#include "H5Opublic.h" /* Object headers */
+#include "H5Ppublic.h" /* Property lists */
+#include "H5Rpublic.h" /* References */
+#include "H5Spublic.h" /* Dataspaces */
+#include "H5Tpublic.h" /* Datatypes */
+#include "H5Zpublic.h" /* Data filters */
+
+/* Predefined file drivers */
+#include "H5FDcore.h" /* Files stored entirely in memory */
+#include "H5FDfamily.h" /* File families */
+#include "H5FDlog.h" /* sec2 driver with I/O logging (for debugging) */
+#include "H5FDmpi.h" /* MPI-based file drivers */
+#include "H5FDmulti.h" /* Usage-partitioned file family */
+#include "H5FDsec2.h" /* POSIX unbuffered file I/O */
+#include "H5FDstdio.h" /* Standard C buffered I/O */
+#ifdef H5_HAVE_WINDOWS
+#include "H5FDwindows.h" /* Windows buffered I/O */
+#endif
+#include "H5FDdirect.h" /* Linux direct I/O */
+
+#endif
diff --git a/privatemodules/nc4/include/hdf5_hl.h b/privatemodules/nc4/include/hdf5_hl.h
new file mode 100644
index 0000000000000000000000000000000000000000..46439324e1c2b7b9ff7bd5d4bae3473bc032bbc5
--- /dev/null
+++ b/privatemodules/nc4/include/hdf5_hl.h
@@ -0,0 +1,33 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This is the main public HDF5 High Level include file. Put further
+ * information in a particular header file and include that here, don't
+ * fill this file with lots of gunk...
+ */
+
+#ifndef _HDF5_HL_H
+#define _HDF5_HL_H
+
+#include "H5DOpublic.h" /* dataset optimization */
+#include "H5DSpublic.h" /* dimension scales */
+#include "H5LTpublic.h" /* lite */
+#include "H5IMpublic.h" /* image */
+#include "H5TBpublic.h" /* table */
+#include "H5PTpublic.h" /* table */
+
+#endif /*H5_INCLUDE_HL*/
+
diff --git a/privatemodules/nc4/include/netcdf.h b/privatemodules/nc4/include/netcdf.h
new file mode 100644
index 0000000000000000000000000000000000000000..2dbcebef3233ec62cd14ccb2e6e17ce28ed400cd
--- /dev/null
+++ b/privatemodules/nc4/include/netcdf.h
@@ -0,0 +1,1978 @@
+/*! \file
+
+Main header file for the C API.
+
+Copyright 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014
+University Corporation for Atmospheric Research/Unidata.
+
+See \ref copyright file for more info.
+*/
+
+#ifndef _NETCDF_
+#define _NETCDF_
+
+#include <stddef.h> /* size_t, ptrdiff_t */
+#include <errno.h> /* netcdf functions sometimes return system errors */
+
+/* Required for alloca on Windows */
+#if defined(_WIN32) || defined(_WIN64)
+#include <malloc.h>
+#endif
+
+#ifdef _WIN64
+#include <sys/stat.h>
+#endif
+
+/*! The nc_type type is just an int. */
+typedef int nc_type;
+
+#if defined(__cplusplus)
+extern "C" {
+#endif
+
+/*
+ * The netcdf external data types
+ */
+#define NC_NAT 0 /**< Not A Type */
+#define NC_BYTE 1 /**< signed 1 byte integer */
+#define NC_CHAR 2 /**< ISO/ASCII character */
+#define NC_SHORT 3 /**< signed 2 byte integer */
+#define NC_INT 4 /**< signed 4 byte integer */
+#define NC_LONG NC_INT /**< \deprecated required for backward compatibility. */
+#define NC_FLOAT 5 /**< single precision floating point number */
+#define NC_DOUBLE 6 /**< double precision floating point number */
+#define NC_UBYTE 7 /**< unsigned 1 byte int */
+#define NC_USHORT 8 /**< unsigned 2-byte int */
+#define NC_UINT 9 /**< unsigned 4-byte int */
+#define NC_INT64 10 /**< signed 8-byte int */
+#define NC_UINT64 11 /**< unsigned 8-byte int */
+#define NC_STRING 12 /**< string */
+
+#define NC_MAX_ATOMIC_TYPE NC_STRING
+
+/* The following are use internally in support of user-defines
+ * types. They are also the class returned by nc_inq_user_type. */
+#define NC_VLEN 13 /**< vlen (variable-length) types */
+#define NC_OPAQUE 14 /**< opaque types */
+#define NC_ENUM 15 /**< enum types */
+#define NC_COMPOUND 16 /**< compound types */
+
+/* Define the first user defined type id (leave some room) */
+#define NC_FIRSTUSERTYPEID 32
+
+/** Default fill value. This is used unless _FillValue attribute
+ * is set. These values are stuffed into newly allocated space as
+ * appropriate. The hope is that one might use these to notice that a
+ * particular datum has not been set. */
+/**@{*/
+#define NC_FILL_BYTE ((signed char)-127)
+#define NC_FILL_CHAR ((char)0)
+#define NC_FILL_SHORT ((short)-32767)
+#define NC_FILL_INT (-2147483647L)
+#define NC_FILL_FLOAT (9.9692099683868690e+36f) /* near 15 * 2^119 */
+#define NC_FILL_DOUBLE (9.9692099683868690e+36)
+#define NC_FILL_UBYTE (255)
+#define NC_FILL_USHORT (65535)
+#define NC_FILL_UINT (4294967295U)
+#define NC_FILL_INT64 ((long long)-9223372036854775806LL)
+#define NC_FILL_UINT64 ((unsigned long long)18446744073709551614ULL)
+#define NC_FILL_STRING ((char *)"")
+/**@}*/
+
+/*! Max or min values for a type. Nothing greater/smaller can be
+ * stored in a netCDF file for their associated types. Recall that a C
+ * compiler may define int to be any length it wants, but a NC_INT is
+ * *always* a 4 byte signed int. On a platform with 64 bit ints,
+ * there will be many ints which are outside the range supported by
+ * NC_INT. But since NC_INT is an external format, it has to mean the
+ * same thing everywhere. */
+/**@{*/
+#define NC_MAX_BYTE 127
+#define NC_MIN_BYTE (-NC_MAX_BYTE-1)
+#define NC_MAX_CHAR 255
+#define NC_MAX_SHORT 32767
+#define NC_MIN_SHORT (-NC_MAX_SHORT - 1)
+#define NC_MAX_INT 2147483647
+#define NC_MIN_INT (-NC_MAX_INT - 1)
+#define NC_MAX_FLOAT 3.402823466e+38f
+#define NC_MIN_FLOAT (-NC_MAX_FLOAT)
+#define NC_MAX_DOUBLE 1.7976931348623157e+308
+#define NC_MIN_DOUBLE (-NC_MAX_DOUBLE)
+#define NC_MAX_UBYTE NC_MAX_CHAR
+#define NC_MAX_USHORT 65535U
+#define NC_MAX_UINT 4294967295U
+#define NC_MAX_INT64 (9223372036854775807LL)
+#define NC_MIN_INT64 (-9223372036854775807LL-1)
+#define NC_MAX_UINT64 (18446744073709551615ULL)
+#define X_INT64_MAX (9223372036854775807LL)
+#define X_INT64_MIN (-X_INT64_MAX - 1)
+#define X_UINT64_MAX (18446744073709551615ULL)
+/**@}*/
+
+/** Name of fill value attribute. If you wish a variable to use a
+ * different value than the above defaults, create an attribute with
+ * the same type as the variable and this reserved name. The value you
+ * give the attribute will be used as the fill value for that
+ * variable. */
+#define _FillValue "_FillValue"
+#define NC_FILL 0 /**< Argument to nc_set_fill() to clear NC_NOFILL */
+#define NC_NOFILL 0x100 /**< Argument to nc_set_fill() to turn off filling of data. */
+
+/* Define the ioflags bits for nc_create and nc_open.
+ currently unused:
+ 0x0002
+ 0x0040
+ 0x0080
+ and the whole upper 16 bits
+*/
+
+#define NC_NOWRITE 0x0000 /**< Set read-only access for nc_open(). */
+#define NC_WRITE 0x0001 /**< Set read-write access for nc_open(). */
+#define NC_CLOBBER 0x0000 /**< Destroy existing file. Mode flag for nc_create(). */
+#define NC_NOCLOBBER 0x0004 /**< Don't destroy existing file. Mode flag for nc_create(). */
+
+#define NC_DISKLESS 0x0008 /**< Use diskless file. Mode flag for nc_open() or nc_create(). */
+#define NC_MMAP 0x0010 /**< Use diskless file with mmap. Mode flag for nc_open() or nc_create(). */
+
+#define NC_64BIT_DATA 0x0020 /**< CDF-5 format: classic model but 64 bit dimensions and sizes */
+#define NC_CDF5 NC_64BIT_DATA /**< Alias NC_CDF5 to NC_64BIT_DATA */
+
+#define NC_CLASSIC_MODEL 0x0100 /**< Enforce classic model on netCDF-4. Mode flag for nc_create(). */
+#define NC_64BIT_OFFSET 0x0200 /**< Use large (64-bit) file offsets. Mode flag for nc_create(). */
+
+/** \deprecated The following flag currently is ignored, but use in
+ * nc_open() or nc_create() may someday support use of advisory
+ * locking to prevent multiple writers from clobbering a file
+ */
+#define NC_LOCK 0x0400
+
+/** Share updates, limit caching.
+Use this in mode flags for both nc_create() and nc_open(). */
+#define NC_SHARE 0x0800
+
+#define NC_NETCDF4 0x1000 /**< Use netCDF-4/HDF5 format. Mode flag for nc_create(). */
+
+/** Turn on MPI I/O.
+Use this in mode flags for both nc_create() and nc_open(). */
+#define NC_MPIIO 0x2000
+/** Turn on MPI POSIX I/O.
+Use this in mode flags for both nc_create() and nc_open(). */
+#define NC_MPIPOSIX 0x4000 /**< \deprecated As of libhdf5 1.8.13. */
+
+#define NC_INMEMORY 0x8000 /**< Read from memory. Mode flag for nc_open() or nc_create(). */
+
+#define NC_PNETCDF (NC_MPIIO) /**< Use parallel-netcdf library; alias for NC_MPIIO. */
+
+/** Format specifier for nc_set_default_format() and returned
+ * by nc_inq_format. This returns the format as provided by
+ * the API. See nc_inq_format_extended to see the true file format.
+ * Starting with version 3.6, there are different format netCDF files.
+ * 4.0 introduces the third one. \see netcdf_format
+ */
+/**@{*/
+#define NC_FORMAT_CLASSIC (1)
+/* After adding CDF5 support, this flag
+ is somewhat confusing. So, it is renamed.
+ Note that the name in the contributed code
+ NC_FORMAT_64BIT was renamed to NC_FORMAT_CDF2
+*/
+#define NC_FORMAT_64BIT_OFFSET (2)
+#define NC_FORMAT_64BIT (NC_FORMAT_64BIT_OFFSET) /**< \deprecated Saved for compatibility. Use NC_FORMAT_64BIT_OFFSET or NC_FORMAT_64BIT_DATA, from netCDF 4.4.0 onwards. */
+#define NC_FORMAT_NETCDF4 (3)
+#define NC_FORMAT_NETCDF4_CLASSIC (4)
+#define NC_FORMAT_64BIT_DATA (5)
+
+/* Alias */
+#define NC_FORMAT_CDF5 NC_FORMAT_64BIT_DATA
+
+/**@}*/
+
+/** Extended format specifier returned by nc_inq_format_extended()
+ * Added in version 4.3.1. This returns the true format of the
+ * underlying data.
+ * The function returns two values
+ * 1. a small integer indicating the underlying source type
+ * of the data. Note that this may differ from what the user
+ * sees from nc_inq_format() because this latter function
+ * returns what the user can expect to see thru the API.
+ * 2. A mode value indicating what mode flags are effectively
+ * set for this dataset. This usually will be a superset
+ * of the mode flags used as the argument to nc_open
+ * or nc_create.
+ * More or less, the #1 values track the set of dispatch tables.
+ * The #1 values are as follows.
+ * Note that CDF-5 returns NC_FORMAT_NC3, but sets the mode flag properly.
+ */
+/**@{*/
+
+#define NC_FORMATX_NC3 (1)
+#define NC_FORMATX_NC_HDF5 (2) /**< netCDF-4 subset of HDF5 */
+#define NC_FORMATX_NC4 NC_FORMATX_NC_HDF5 /**< alias */
+#define NC_FORMATX_NC_HDF4 (3) /**< netCDF-4 subset of HDF4 */
+#define NC_FORMATX_PNETCDF (4)
+#define NC_FORMATX_DAP2 (5)
+#define NC_FORMATX_DAP4 (6)
+#define NC_FORMATX_UNDEFINED (0)
+
+ /* To avoid breaking compatibility (such as in the python library),
+ we need to retain the NC_FORMAT_xxx format as well. This may come
+ out eventually, as the NC_FORMATX is more clear that it's an extended
+ format specifier.*/
+
+#define NC_FORMAT_NC3 NC_FORMATX_NC3 /**< \deprecated As of 4.4.0, use NC_FORMATX_NC3 */
+#define NC_FORMAT_NC_HDF5 NC_FORMATX_NC_HDF5 /**< \deprecated As of 4.4.0, use NC_FORMATX_NC_HDF5 */
+#define NC_FORMAT_NC4 NC_FORMATX_NC4 /**< \deprecated As of 4.4.0, use NC_FORMATX_NC4 */
+#define NC_FORMAT_NC_HDF4 NC_FORMATX_NC_HDF4 /**< \deprecated As of 4.4.0, use NC_FORMATX_HDF4 */
+#define NC_FORMAT_PNETCDF NC_FORMATX_PNETCDF /**< \deprecated As of 4.4.0, use NC_FORMATX_PNETCDF */
+#define NC_FORMAT_DAP2 NC_FORMATX_DAP2 /**< \deprecated As of 4.4.0, use NC_FORMATX_DAP2 */
+#define NC_FORMAT_DAP4 NC_FORMATX_DAP4 /**< \deprecated As of 4.4.0, use NC_FORMATX_DAP4 */
+#define NC_FORMAT_UNDEFINED NC_FORMATX_UNDEFINED /**< \deprecated As of 4.4.0, use NC_FORMATX_UNDEFINED */
+
+/**@}*/
+
+/** Let nc__create() or nc__open() figure out a suitable buffer size. */
+#define NC_SIZEHINT_DEFAULT 0
+
+/** In nc__enddef(), align to the buffer size. */
+#define NC_ALIGN_CHUNK ((size_t)(-1))
+
+/** Size argument to nc_def_dim() for an unlimited dimension. */
+#define NC_UNLIMITED 0L
+
+/** Attribute id to put/get a global attribute. */
+#define NC_GLOBAL -1
+
+/**
+Maximum for classic library.
+
+In the classic netCDF model there are maximum values for the number of
+dimensions in the file (\ref NC_MAX_DIMS), the number of global or per
+variable attributes (\ref NC_MAX_ATTRS), the number of variables in
+the file (\ref NC_MAX_VARS), and the length of a name (\ref
+NC_MAX_NAME).
+
+These maximums are enforced by the interface, to facilitate writing
+applications and utilities. However, nothing is statically allocated
+to these sizes internally.
+
+These maximums are not used for netCDF-4/HDF5 files unless they were
+created with the ::NC_CLASSIC_MODEL flag.
+
+As a rule, NC_MAX_VAR_DIMS <= NC_MAX_DIMS.
+*/
+/**@{*/
+#define NC_MAX_DIMS 1024
+#define NC_MAX_ATTRS 8192
+#define NC_MAX_VARS 8192
+#define NC_MAX_NAME 256
+#define NC_MAX_VAR_DIMS 1024 /**< max per variable dimensions */
+/**@}*/
+
+/** This is the max size of an SD dataset name in HDF4 (from HDF4 documentation).*/
+#define NC_MAX_HDF4_NAME 64
+
+/** In HDF5 files you can set the endianness of variables with
+ nc_def_var_endian(). This define is used there. */
+/**@{*/
+#define NC_ENDIAN_NATIVE 0
+#define NC_ENDIAN_LITTLE 1
+#define NC_ENDIAN_BIG 2
+/**@}*/
+
+/** In HDF5 files you can set storage for each variable to be either
+ * contiguous or chunked, with nc_def_var_chunking(). This define is
+ * used there. */
+/**@{*/
+#define NC_CHUNKED 0
+#define NC_CONTIGUOUS 1
+/**@}*/
+
+/** In HDF5 files you can set check-summing for each variable.
+Currently the only checksum available is Fletcher-32, which can be set
+with the function nc_def_var_fletcher32. These defines are used
+there. */
+/**@{*/
+#define NC_NOCHECKSUM 0
+#define NC_FLETCHER32 1
+/**@}*/
+
+/**@{*/
+/** Control the HDF5 shuffle filter. In HDF5 files you can specify
+ * that a shuffle filter should be used on each chunk of a variable to
+ * improve compression for that variable. This per-variable shuffle
+ * property can be set with the function nc_def_var_deflate(). */
+#define NC_NOSHUFFLE 0
+#define NC_SHUFFLE 1
+/**@}*/
+
+/** The netcdf version 3 functions all return integer error status.
+ * These are the possible values, in addition to certain values from
+ * the system errno.h.
+ */
+#define NC_ISSYSERR(err) ((err) > 0)
+
+#define NC_NOERR 0 /**< No Error */
+#define NC2_ERR (-1) /**< Returned for all errors in the v2 API. */
+
+/** Not a netcdf id.
+
+The specified netCDF ID does not refer to an
+open netCDF dataset. */
+#define NC_EBADID (-33)
+#define NC_ENFILE (-34) /**< Too many netcdfs open */
+#define NC_EEXIST (-35) /**< netcdf file exists && NC_NOCLOBBER */
+#define NC_EINVAL (-36) /**< Invalid Argument */
+#define NC_EPERM (-37) /**< Write to read only */
+
+/** Operation not allowed in data mode. This is returned for netCDF
+classic or 64-bit offset files, or for netCDF-4 files, when they were
+been created with ::NC_CLASSIC_MODEL flag in nc_create(). */
+#define NC_ENOTINDEFINE (-38)
+
+/** Operation not allowed in define mode.
+
+The specified netCDF is in define mode rather than data mode.
+
+With netCDF-4/HDF5 files, this error will not occur, unless
+::NC_CLASSIC_MODEL was used in nc_create().
+ */
+#define NC_EINDEFINE (-39)
+
+/** Index exceeds dimension bound.
+
+The specified corner indices were out of range for the rank of the
+specified variable. For example, a negative index or an index that is
+larger than the corresponding dimension length will cause an error. */
+#define NC_EINVALCOORDS (-40)
+
+/** NC_MAX_DIMS exceeded. Max number of dimensions exceeded in a
+classic or 64-bit offset file, or an netCDF-4 file with
+::NC_CLASSIC_MODEL on. */
+#define NC_EMAXDIMS (-41)
+
+#define NC_ENAMEINUSE (-42) /**< String match to name in use */
+#define NC_ENOTATT (-43) /**< Attribute not found */
+#define NC_EMAXATTS (-44) /**< NC_MAX_ATTRS exceeded */
+#define NC_EBADTYPE (-45) /**< Not a netcdf data type */
+#define NC_EBADDIM (-46) /**< Invalid dimension id or name */
+#define NC_EUNLIMPOS (-47) /**< NC_UNLIMITED in the wrong index */
+
+/** NC_MAX_VARS exceeded. Max number of variables exceeded in a
+classic or 64-bit offset file, or an netCDF-4 file with
+::NC_CLASSIC_MODEL on. */
+#define NC_EMAXVARS (-48)
+
+/** Variable not found.
+
+The variable ID is invalid for the specified netCDF dataset. */
+#define NC_ENOTVAR (-49)
+#define NC_EGLOBAL (-50) /**< Action prohibited on NC_GLOBAL varid */
+#define NC_ENOTNC (-51) /**< Not a netcdf file */
+#define NC_ESTS (-52) /**< In Fortran, string too short */
+#define NC_EMAXNAME (-53) /**< NC_MAX_NAME exceeded */
+#define NC_EUNLIMIT (-54) /**< NC_UNLIMITED size already in use */
+#define NC_ENORECVARS (-55) /**< nc_rec op when there are no record vars */
+#define NC_ECHAR (-56) /**< Attempt to convert between text & numbers */
+
+/** Start+count exceeds dimension bound.
+
+The specified edge lengths added to the specified corner would have
+referenced data out of range for the rank of the specified
+variable. For example, an edge length that is larger than the
+corresponding dimension length minus the corner index will cause an
+error. */
+#define NC_EEDGE (-57)
+#define NC_ESTRIDE (-58) /**< Illegal stride */
+#define NC_EBADNAME (-59) /**< Attribute or variable name contains illegal characters */
+/* N.B. following must match value in ncx.h */
+
+/** Math result not representable.
+
+One or more of the values are out of the range of values representable
+by the desired type. */
+#define NC_ERANGE (-60)
+#define NC_ENOMEM (-61) /**< Memory allocation (malloc) failure */
+#define NC_EVARSIZE (-62) /**< One or more variable sizes violate format constraints */
+#define NC_EDIMSIZE (-63) /**< Invalid dimension size */
+#define NC_ETRUNC (-64) /**< File likely truncated or possibly corrupted */
+#define NC_EAXISTYPE (-65) /**< Unknown axis type. */
+
+/* Following errors are added for DAP */
+#define NC_EDAP (-66) /**< Generic DAP error */
+#define NC_ECURL (-67) /**< Generic libcurl error */
+#define NC_EIO (-68) /**< Generic IO error */
+#define NC_ENODATA (-69) /**< Attempt to access variable with no data */
+#define NC_EDAPSVC (-70) /**< DAP server error */
+#define NC_EDAS (-71) /**< Malformed or inaccessible DAS */
+#define NC_EDDS (-72) /**< Malformed or inaccessible DDS */
+#define NC_EDATADDS (-73) /**< Malformed or inaccessible DATADDS */
+#define NC_EDAPURL (-74) /**< Malformed DAP URL */
+#define NC_EDAPCONSTRAINT (-75) /**< Malformed DAP Constraint*/
+#define NC_ETRANSLATION (-76) /**< Untranslatable construct */
+#define NC_EACCESS (-77) /**< Access Failure */
+#define NC_EAUTH (-78) /**< Authorization Failure */
+
+/* Misc. additional errors */
+#define NC_ENOTFOUND (-90) /**< No such file */
+#define NC_ECANTREMOVE (-91) /**< Can't remove file */
+
+/* The following was added in support of netcdf-4. Make all netcdf-4
+ error codes < -100 so that errors can be added to netcdf-3 if
+ needed. */
+#define NC4_FIRST_ERROR (-100)
+
+/** Error at HDF5 layer. */
+#define NC_EHDFERR (-101)
+#define NC_ECANTREAD (-102) /**< Can't read. */
+#define NC_ECANTWRITE (-103) /**< Can't write. */
+#define NC_ECANTCREATE (-104) /**< Can't create. */
+#define NC_EFILEMETA (-105) /**< Problem with file metadata. */
+#define NC_EDIMMETA (-106) /**< Problem with dimension metadata. */
+#define NC_EATTMETA (-107) /**< Problem with attribute metadata. */
+#define NC_EVARMETA (-108) /**< Problem with variable metadata. */
+#define NC_ENOCOMPOUND (-109) /**< Not a compound type. */
+#define NC_EATTEXISTS (-110) /**< Attribute already exists. */
+#define NC_ENOTNC4 (-111) /**< Attempting netcdf-4 operation on netcdf-3 file. */
+
+/** Attempting netcdf-4 operation on strict nc3 netcdf-4 file. */
+#define NC_ESTRICTNC3 (-112)
+#define NC_ENOTNC3 (-113) /**< Attempting netcdf-3 operation on netcdf-4 file. */
+#define NC_ENOPAR (-114) /**< Parallel operation on file opened for non-parallel access. */
+#define NC_EPARINIT (-115) /**< Error initializing for parallel access. */
+#define NC_EBADGRPID (-116) /**< Bad group ID. */
+#define NC_EBADTYPID (-117) /**< Bad type ID. */
+#define NC_ETYPDEFINED (-118) /**< Type has already been defined and may not be edited. */
+#define NC_EBADFIELD (-119) /**< Bad field ID. */
+#define NC_EBADCLASS (-120) /**< Bad class. */
+#define NC_EMAPTYPE (-121) /**< Mapped access for atomic types only. */
+#define NC_ELATEFILL (-122) /**< Attempt to define fill value when data already exists. */
+#define NC_ELATEDEF (-123) /**< Attempt to define var properties, like deflate, after enddef. */
+#define NC_EDIMSCALE (-124) /**< Problem with HDF5 dimscales. */
+#define NC_ENOGRP (-125) /**< No group found. */
+#define NC_ESTORAGE (-126) /**< Can't specify both contiguous and chunking. */
+#define NC_EBADCHUNK (-127) /**< Bad chunksize. */
+#define NC_ENOTBUILT (-128) /**< Attempt to use feature that was not turned on when netCDF was built. */
+#define NC_EDISKLESS (-129) /**< Error in using diskless access. */
+#define NC_ECANTEXTEND (-130) /**< Attempt to extend dataset during ind. I/O operation. */
+#define NC_EMPI (-131) /**< MPI operation failed. */
+
+#define NC4_LAST_ERROR (-131)
+
+/* This is used in netCDF-4 files for dimensions without coordinate
+ * vars. */
+#define DIM_WITHOUT_VARIABLE "This is a netCDF dimension but not a netCDF variable."
+
+/* This is here at the request of the NCO team to support our
+ * mistake of having chunksizes be first ints, then size_t. Doh! */
+#define NC_HAVE_NEW_CHUNKING_API 1
+
+
+/*Errors for all remote access methods(e.g. DAP and CDMREMOTE)*/
+#define NC_EURL (NC_EDAPURL) /* Malformed URL */
+#define NC_ECONSTRAINT (NC_EDAPCONSTRAINT) /* Malformed Constraint*/
+
+
+/*
+ * The Interface
+ */
+
+/* Declaration modifiers for DLL support (MSC et al) */
+#if defined(DLL_NETCDF) /* define when library is a DLL */
+# if defined(DLL_EXPORT) /* define when building the library */
+# define MSC_EXTRA __declspec(dllexport)
+# else
+# define MSC_EXTRA __declspec(dllimport)
+# endif
+#include <io.h>
+#else
+#define MSC_EXTRA
+#endif /* defined(DLL_NETCDF) */
+
+# define EXTERNL MSC_EXTRA extern
+
+#if defined(DLL_NETCDF) /* define when library is a DLL */
+EXTERNL int ncerr;
+EXTERNL int ncopts;
+#endif
+
+EXTERNL const char *
+nc_inq_libvers(void);
+
+EXTERNL const char *
+nc_strerror(int ncerr);
+
+EXTERNL int
+nc__create(const char *path, int cmode, size_t initialsz,
+ size_t *chunksizehintp, int *ncidp);
+
+EXTERNL int
+nc_create(const char *path, int cmode, int *ncidp);
+
+EXTERNL int
+nc__open(const char *path, int mode,
+ size_t *chunksizehintp, int *ncidp);
+
+EXTERNL int
+nc_open(const char *path, int mode, int *ncidp);
+
+/* Learn the path used to open/create the file. */
+EXTERNL int
+nc_inq_path(int ncid, size_t *pathlen, char *path);
+
+/* Given an ncid and group name (NULL gets root group), return
+ * locid. */
+EXTERNL int
+nc_inq_ncid(int ncid, const char *name, int *grp_ncid);
+
+/* Given a location id, return the number of groups it contains, and
+ * an array of their locids. */
+EXTERNL int
+nc_inq_grps(int ncid, int *numgrps, int *ncids);
+
+/* Given locid, find name of group. (Root group is named "/".) */
+EXTERNL int
+nc_inq_grpname(int ncid, char *name);
+
+/* Given ncid, find full name and len of full name. (Root group is
+ * named "/", with length 1.) */
+EXTERNL int
+nc_inq_grpname_full(int ncid, size_t *lenp, char *full_name);
+
+/* Given ncid, find len of full name. */
+EXTERNL int
+nc_inq_grpname_len(int ncid, size_t *lenp);
+
+/* Given an ncid, find the ncid of its parent group. */
+EXTERNL int
+nc_inq_grp_parent(int ncid, int *parent_ncid);
+
+/* Given a name and parent ncid, find group ncid. */
+EXTERNL int
+nc_inq_grp_ncid(int ncid, const char *grp_name, int *grp_ncid);
+
+/* Given a full name and ncid, find group ncid. */
+EXTERNL int
+nc_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid);
+
+/* Get a list of ids for all the variables in a group. */
+EXTERNL int
+nc_inq_varids(int ncid, int *nvars, int *varids);
+
+/* Find all dimids for a location. This finds all dimensions in a
+ * group, or any of its parents. */
+EXTERNL int
+nc_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents);
+
+/* Find all user-defined types for a location. This finds all
+ * user-defined types in a group. */
+EXTERNL int
+nc_inq_typeids(int ncid, int *ntypes, int *typeids);
+
+/* Are two types equal? */
+EXTERNL int
+nc_inq_type_equal(int ncid1, nc_type typeid1, int ncid2,
+ nc_type typeid2, int *equal);
+
+/* Create a group. its ncid is returned in the new_ncid pointer. */
+EXTERNL int
+nc_def_grp(int parent_ncid, const char *name, int *new_ncid);
+
+/* Rename a group */
+EXTERNL int
+nc_rename_grp(int grpid, const char *name);
+
+/* Here are functions for dealing with compound types. */
+
+/* Create a compound type. */
+EXTERNL int
+nc_def_compound(int ncid, size_t size, const char *name, nc_type *typeidp);
+
+/* Insert a named field into a compound type. */
+EXTERNL int
+nc_insert_compound(int ncid, nc_type xtype, const char *name,
+ size_t offset, nc_type field_typeid);
+
+/* Insert a named array into a compound type. */
+EXTERNL int
+nc_insert_array_compound(int ncid, nc_type xtype, const char *name,
+ size_t offset, nc_type field_typeid,
+ int ndims, const int *dim_sizes);
+
+/* Get the name and size of a type. */
+EXTERNL int
+nc_inq_type(int ncid, nc_type xtype, char *name, size_t *size);
+
+/* Get the id of a type from the name. */
+EXTERNL int
+nc_inq_typeid(int ncid, const char *name, nc_type *typeidp);
+
+/* Get the name, size, and number of fields in a compound type. */
+EXTERNL int
+nc_inq_compound(int ncid, nc_type xtype, char *name, size_t *sizep,
+ size_t *nfieldsp);
+
+/* Get the name of a compound type. */
+EXTERNL int
+nc_inq_compound_name(int ncid, nc_type xtype, char *name);
+
+/* Get the size of a compound type. */
+EXTERNL int
+nc_inq_compound_size(int ncid, nc_type xtype, size_t *sizep);
+
+/* Get the number of fields in this compound type. */
+EXTERNL int
+nc_inq_compound_nfields(int ncid, nc_type xtype, size_t *nfieldsp);
+
+/* Given the xtype and the fieldid, get all info about it. */
+EXTERNL int
+nc_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name,
+ size_t *offsetp, nc_type *field_typeidp, int *ndimsp,
+ int *dim_sizesp);
+
+/* Given the typeid and the fieldid, get the name. */
+EXTERNL int
+nc_inq_compound_fieldname(int ncid, nc_type xtype, int fieldid,
+ char *name);
+
+/* Given the xtype and the name, get the fieldid. */
+EXTERNL int
+nc_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name,
+ int *fieldidp);
+
+/* Given the xtype and fieldid, get the offset. */
+EXTERNL int
+nc_inq_compound_fieldoffset(int ncid, nc_type xtype, int fieldid,
+ size_t *offsetp);
+
+/* Given the xtype and the fieldid, get the type of that field. */
+EXTERNL int
+nc_inq_compound_fieldtype(int ncid, nc_type xtype, int fieldid,
+ nc_type *field_typeidp);
+
+/* Given the xtype and the fieldid, get the number of dimensions for
+ * that field (scalars are 0). */
+EXTERNL int
+nc_inq_compound_fieldndims(int ncid, nc_type xtype, int fieldid,
+ int *ndimsp);
+
+/* Given the xtype and the fieldid, get the sizes of dimensions for
+ * that field. User must have allocated storage for the dim_sizes. */
+EXTERNL int
+nc_inq_compound_fielddim_sizes(int ncid, nc_type xtype, int fieldid,
+ int *dim_sizes);
+
+/** This is the type of arrays of vlens. */
+typedef struct {
+ size_t len; /**< Length of VL data (in base type units) */
+ void *p; /**< Pointer to VL data */
+} nc_vlen_t;
+
+/** Calculate an offset for creating a compound type. This calls a
+ * mysterious C macro which was found carved into one of the blocks of
+ * the Newgrange passage tomb in County Meath, Ireland. This code has
+ * been carbon dated to 3200 B.C.E. */
+#define NC_COMPOUND_OFFSET(S,M) (offsetof(S,M))
+
+/* Create a variable length type. */
+EXTERNL int
+nc_def_vlen(int ncid, const char *name, nc_type base_typeid, nc_type *xtypep);
+
+/* Find out about a vlen. */
+EXTERNL int
+nc_inq_vlen(int ncid, nc_type xtype, char *name, size_t *datum_sizep,
+ nc_type *base_nc_typep);
+
+/* When you read VLEN type the library will actually allocate the
+ * storage space for the data. This storage space must be freed, so
+ * pass the pointer back to this function, when you're done with the
+ * data, and it will free the vlen memory. */
+EXTERNL int
+nc_free_vlen(nc_vlen_t *vl);
+
+EXTERNL int
+nc_free_vlens(size_t len, nc_vlen_t vlens[]);
+
+/* Put or get one element in a vlen array. */
+EXTERNL int
+nc_put_vlen_element(int ncid, int typeid1, void *vlen_element,
+ size_t len, const void *data);
+
+EXTERNL int
+nc_get_vlen_element(int ncid, int typeid1, const void *vlen_element,
+ size_t *len, void *data);
+
+/* When you read the string type the library will allocate the storage
+ * space for the data. This storage space must be freed, so pass the
+ * pointer back to this function, when you're done with the data, and
+ * it will free the string memory. */
+EXTERNL int
+nc_free_string(size_t len, char **data);
+
+/* Find out about a user defined type. */
+EXTERNL int
+nc_inq_user_type(int ncid, nc_type xtype, char *name, size_t *size,
+ nc_type *base_nc_typep, size_t *nfieldsp, int *classp);
+
+/* Write an attribute of any type. */
+EXTERNL int
+nc_put_att(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const void *op);
+
+/* Read an attribute of any type. */
+EXTERNL int
+nc_get_att(int ncid, int varid, const char *name, void *ip);
+
+/* Enum type. */
+
+/* Create an enum type. Provide a base type and a name. At the moment
+ * only ints are accepted as base types. */
+EXTERNL int
+nc_def_enum(int ncid, nc_type base_typeid, const char *name,
+ nc_type *typeidp);
+
+/* Insert a named value into an enum type. The value must fit within
+ * the size of the enum type, the name size must be <= NC_MAX_NAME. */
+EXTERNL int
+nc_insert_enum(int ncid, nc_type xtype, const char *name,
+ const void *value);
+
+/* Get information about an enum type: its name, base type and the
+ * number of members defined. */
+EXTERNL int
+nc_inq_enum(int ncid, nc_type xtype, char *name, nc_type *base_nc_typep,
+ size_t *base_sizep, size_t *num_membersp);
+
+/* Get information about an enum member: a name and value. Name size
+ * will be <= NC_MAX_NAME. */
+EXTERNL int
+nc_inq_enum_member(int ncid, nc_type xtype, int idx, char *name,
+ void *value);
+
+
+/* Get enum name from enum value. Name size will be <= NC_MAX_NAME. */
+EXTERNL int
+nc_inq_enum_ident(int ncid, nc_type xtype, long long value, char *identifier);
+
+/* Opaque type. */
+
+/* Create an opaque type. Provide a size and a name. */
+EXTERNL int
+nc_def_opaque(int ncid, size_t size, const char *name, nc_type *xtypep);
+
+/* Get information about an opaque type. */
+EXTERNL int
+nc_inq_opaque(int ncid, nc_type xtype, char *name, size_t *sizep);
+
+/* Write entire var of any type. */
+EXTERNL int
+nc_put_var(int ncid, int varid, const void *op);
+
+/* Read entire var of any type. */
+EXTERNL int
+nc_get_var(int ncid, int varid, void *ip);
+
+/* Write one value. */
+EXTERNL int
+nc_put_var1(int ncid, int varid, const size_t *indexp,
+ const void *op);
+
+/* Read one value. */
+EXTERNL int
+nc_get_var1(int ncid, int varid, const size_t *indexp, void *ip);
+
+/* Write an array of values. */
+EXTERNL int
+nc_put_vara(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const void *op);
+
+/* Read an array of values. */
+EXTERNL int
+nc_get_vara(int ncid, int varid, const size_t *startp,
+ const size_t *countp, void *ip);
+
+/* Write slices of an array of values. */
+EXTERNL int
+nc_put_vars(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const void *op);
+
+/* Read slices of an array of values. */
+EXTERNL int
+nc_get_vars(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ void *ip);
+
+/* Write mapped slices of an array of values. */
+EXTERNL int
+nc_put_varm(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const void *op);
+
+/* Read mapped slices of an array of values. */
+EXTERNL int
+nc_get_varm(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, void *ip);
+
+/* Extra netcdf-4 stuff. */
+
+/* Set compression settings for a variable. Lower is faster, higher is
+ * better. Must be called after nc_def_var and before nc_enddef. */
+EXTERNL int
+nc_def_var_deflate(int ncid, int varid, int shuffle, int deflate,
+ int deflate_level);
+
+/* Find out compression settings of a var. */
+EXTERNL int
+nc_inq_var_deflate(int ncid, int varid, int *shufflep,
+ int *deflatep, int *deflate_levelp);
+
+/* Find out szip settings of a var. */
+EXTERNL int
+nc_inq_var_szip(int ncid, int varid, int *options_maskp, int *pixels_per_blockp);
+
+/* Set fletcher32 checksum for a var. This must be done after nc_def_var
+ and before nc_enddef. */
+EXTERNL int
+nc_def_var_fletcher32(int ncid, int varid, int fletcher32);
+
+/* Inquire about fletcher32 checksum for a var. */
+EXTERNL int
+nc_inq_var_fletcher32(int ncid, int varid, int *fletcher32p);
+
+/* Define chunking for a variable. This must be done after nc_def_var
+ and before nc_enddef. */
+EXTERNL int
+nc_def_var_chunking(int ncid, int varid, int storage, const size_t *chunksizesp);
+
+/* Inq chunking stuff for a var. */
+EXTERNL int
+nc_inq_var_chunking(int ncid, int varid, int *storagep, size_t *chunksizesp);
+
+/* Define fill value behavior for a variable. This must be done after
+ nc_def_var and before nc_enddef. */
+EXTERNL int
+nc_def_var_fill(int ncid, int varid, int no_fill, const void *fill_value);
+
+/* Inq fill value setting for a var. */
+EXTERNL int
+nc_inq_var_fill(int ncid, int varid, int *no_fill, void *fill_valuep);
+
+/* Define the endianness of a variable. */
+EXTERNL int
+nc_def_var_endian(int ncid, int varid, int endian);
+
+/* Learn about the endianness of a variable. */
+EXTERNL int
+nc_inq_var_endian(int ncid, int varid, int *endianp);
+
+/* Set the fill mode (classic or 64-bit offset files only). */
+EXTERNL int
+nc_set_fill(int ncid, int fillmode, int *old_modep);
+
+/* Set the default nc_create format to NC_FORMAT_CLASSIC,
+ * NC_FORMAT_64BIT, NC_FORMAT_NETCDF4, etc */
+EXTERNL int
+nc_set_default_format(int format, int *old_formatp);
+
+/* Set the cache size, nelems, and preemption policy. */
+EXTERNL int
+nc_set_chunk_cache(size_t size, size_t nelems, float preemption);
+
+/* Get the cache size, nelems, and preemption policy. */
+EXTERNL int
+nc_get_chunk_cache(size_t *sizep, size_t *nelemsp, float *preemptionp);
+
+/* Set the per-variable cache size, nelems, and preemption policy. */
+EXTERNL int
+nc_set_var_chunk_cache(int ncid, int varid, size_t size, size_t nelems,
+ float preemption);
+
+/* Get the per-variable cache size, nelems, and preemption policy. */
+EXTERNL int
+nc_get_var_chunk_cache(int ncid, int varid, size_t *sizep, size_t *nelemsp,
+ float *preemptionp);
+
+EXTERNL int
+nc_redef(int ncid);
+
+/* Is this ever used? Convert to parameter form */
+EXTERNL int
+nc__enddef(int ncid, size_t h_minfree, size_t v_align,
+ size_t v_minfree, size_t r_align);
+
+EXTERNL int
+nc_enddef(int ncid);
+
+EXTERNL int
+nc_sync(int ncid);
+
+EXTERNL int
+nc_abort(int ncid);
+
+EXTERNL int
+nc_close(int ncid);
+
+EXTERNL int
+nc_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp);
+
+EXTERNL int
+nc_inq_ndims(int ncid, int *ndimsp);
+
+EXTERNL int
+nc_inq_nvars(int ncid, int *nvarsp);
+
+EXTERNL int
+nc_inq_natts(int ncid, int *nattsp);
+
+EXTERNL int
+nc_inq_unlimdim(int ncid, int *unlimdimidp);
+
+/* The next function is for NetCDF-4 only */
+EXTERNL int
+nc_inq_unlimdims(int ncid, int *nunlimdimsp, int *unlimdimidsp);
+
+/* Added in 3.6.1 to return format of netCDF file. */
+EXTERNL int
+nc_inq_format(int ncid, int *formatp);
+
+/* Added in 4.3.1 to return additional format info */
+EXTERNL int
+nc_inq_format_extended(int ncid, int *formatp, int* modep);
+
+/* Begin _dim */
+
+EXTERNL int
+nc_def_dim(int ncid, const char *name, size_t len, int *idp);
+
+EXTERNL int
+nc_inq_dimid(int ncid, const char *name, int *idp);
+
+EXTERNL int
+nc_inq_dim(int ncid, int dimid, char *name, size_t *lenp);
+
+EXTERNL int
+nc_inq_dimname(int ncid, int dimid, char *name);
+
+EXTERNL int
+nc_inq_dimlen(int ncid, int dimid, size_t *lenp);
+
+EXTERNL int
+nc_rename_dim(int ncid, int dimid, const char *name);
+
+/* End _dim */
+/* Begin _att */
+
+EXTERNL int
+nc_inq_att(int ncid, int varid, const char *name,
+ nc_type *xtypep, size_t *lenp);
+
+EXTERNL int
+nc_inq_attid(int ncid, int varid, const char *name, int *idp);
+
+EXTERNL int
+nc_inq_atttype(int ncid, int varid, const char *name, nc_type *xtypep);
+
+EXTERNL int
+nc_inq_attlen(int ncid, int varid, const char *name, size_t *lenp);
+
+EXTERNL int
+nc_inq_attname(int ncid, int varid, int attnum, char *name);
+
+EXTERNL int
+nc_copy_att(int ncid_in, int varid_in, const char *name, int ncid_out, int varid_out);
+
+EXTERNL int
+nc_rename_att(int ncid, int varid, const char *name, const char *newname);
+
+EXTERNL int
+nc_del_att(int ncid, int varid, const char *name);
+
+/* End _att */
+/* Begin {put,get}_att */
+EXTERNL int
+nc_put_att_text(int ncid, int varid, const char *name,
+ size_t len, const char *op);
+
+EXTERNL int
+nc_get_att_text(int ncid, int varid, const char *name, char *ip);
+
+EXTERNL int
+nc_put_att_string(int ncid, int varid, const char *name,
+ size_t len, const char **op);
+
+EXTERNL int
+nc_get_att_string(int ncid, int varid, const char *name, char **ip);
+
+EXTERNL int
+nc_put_att_uchar(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const unsigned char *op);
+
+EXTERNL int
+nc_get_att_uchar(int ncid, int varid, const char *name, unsigned char *ip);
+
+EXTERNL int
+nc_put_att_schar(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const signed char *op);
+
+EXTERNL int
+nc_get_att_schar(int ncid, int varid, const char *name, signed char *ip);
+
+EXTERNL int
+nc_put_att_short(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const short *op);
+
+EXTERNL int
+nc_get_att_short(int ncid, int varid, const char *name, short *ip);
+
+EXTERNL int
+nc_put_att_int(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const int *op);
+
+EXTERNL int
+nc_get_att_int(int ncid, int varid, const char *name, int *ip);
+
+EXTERNL int
+nc_put_att_long(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const long *op);
+
+EXTERNL int
+nc_get_att_long(int ncid, int varid, const char *name, long *ip);
+
+EXTERNL int
+nc_put_att_float(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const float *op);
+
+EXTERNL int
+nc_get_att_float(int ncid, int varid, const char *name, float *ip);
+
+EXTERNL int
+nc_put_att_double(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const double *op);
+
+EXTERNL int
+nc_get_att_double(int ncid, int varid, const char *name, double *ip);
+
+EXTERNL int
+nc_put_att_ushort(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const unsigned short *op);
+
+EXTERNL int
+nc_get_att_ushort(int ncid, int varid, const char *name, unsigned short *ip);
+
+EXTERNL int
+nc_put_att_uint(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const unsigned int *op);
+
+EXTERNL int
+nc_get_att_uint(int ncid, int varid, const char *name, unsigned int *ip);
+
+EXTERNL int
+nc_put_att_longlong(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const long long *op);
+
+EXTERNL int
+nc_get_att_longlong(int ncid, int varid, const char *name, long long *ip);
+
+EXTERNL int
+nc_put_att_ulonglong(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const unsigned long long *op);
+
+EXTERNL int
+nc_get_att_ulonglong(int ncid, int varid, const char *name,
+ unsigned long long *ip);
+
+
+/* End {put,get}_att */
+/* Begin _var */
+
+EXTERNL int
+nc_def_var(int ncid, const char *name, nc_type xtype, int ndims,
+ const int *dimidsp, int *varidp);
+
+EXTERNL int
+nc_inq_var(int ncid, int varid, char *name, nc_type *xtypep,
+ int *ndimsp, int *dimidsp, int *nattsp);
+
+EXTERNL int
+nc_inq_varid(int ncid, const char *name, int *varidp);
+
+EXTERNL int
+nc_inq_varname(int ncid, int varid, char *name);
+
+EXTERNL int
+nc_inq_vartype(int ncid, int varid, nc_type *xtypep);
+
+EXTERNL int
+nc_inq_varndims(int ncid, int varid, int *ndimsp);
+
+EXTERNL int
+nc_inq_vardimid(int ncid, int varid, int *dimidsp);
+
+EXTERNL int
+nc_inq_varnatts(int ncid, int varid, int *nattsp);
+
+EXTERNL int
+nc_rename_var(int ncid, int varid, const char *name);
+
+EXTERNL int
+nc_copy_var(int ncid_in, int varid, int ncid_out);
+
+#ifndef ncvarcpy
+/* support the old name for now */
+#define ncvarcpy(ncid_in, varid, ncid_out) ncvarcopy((ncid_in), (varid), (ncid_out))
+#endif
+
+/* End _var */
+/* Begin {put,get}_var1 */
+
+EXTERNL int
+nc_put_var1_text(int ncid, int varid, const size_t *indexp, const char *op);
+
+EXTERNL int
+nc_get_var1_text(int ncid, int varid, const size_t *indexp, char *ip);
+
+EXTERNL int
+nc_put_var1_uchar(int ncid, int varid, const size_t *indexp,
+ const unsigned char *op);
+
+EXTERNL int
+nc_get_var1_uchar(int ncid, int varid, const size_t *indexp,
+ unsigned char *ip);
+
+EXTERNL int
+nc_put_var1_schar(int ncid, int varid, const size_t *indexp,
+ const signed char *op);
+
+EXTERNL int
+nc_get_var1_schar(int ncid, int varid, const size_t *indexp,
+ signed char *ip);
+
+EXTERNL int
+nc_put_var1_short(int ncid, int varid, const size_t *indexp,
+ const short *op);
+
+EXTERNL int
+nc_get_var1_short(int ncid, int varid, const size_t *indexp,
+ short *ip);
+
+EXTERNL int
+nc_put_var1_int(int ncid, int varid, const size_t *indexp, const int *op);
+
+EXTERNL int
+nc_get_var1_int(int ncid, int varid, const size_t *indexp, int *ip);
+
+EXTERNL int
+nc_put_var1_long(int ncid, int varid, const size_t *indexp, const long *op);
+
+EXTERNL int
+nc_get_var1_long(int ncid, int varid, const size_t *indexp, long *ip);
+
+EXTERNL int
+nc_put_var1_float(int ncid, int varid, const size_t *indexp, const float *op);
+
+EXTERNL int
+nc_get_var1_float(int ncid, int varid, const size_t *indexp, float *ip);
+
+EXTERNL int
+nc_put_var1_double(int ncid, int varid, const size_t *indexp, const double *op);
+
+EXTERNL int
+nc_get_var1_double(int ncid, int varid, const size_t *indexp, double *ip);
+
+EXTERNL int
+nc_put_var1_ushort(int ncid, int varid, const size_t *indexp,
+ const unsigned short *op);
+
+EXTERNL int
+nc_get_var1_ushort(int ncid, int varid, const size_t *indexp,
+ unsigned short *ip);
+
+EXTERNL int
+nc_put_var1_uint(int ncid, int varid, const size_t *indexp,
+ const unsigned int *op);
+
+EXTERNL int
+nc_get_var1_uint(int ncid, int varid, const size_t *indexp,
+ unsigned int *ip);
+
+EXTERNL int
+nc_put_var1_longlong(int ncid, int varid, const size_t *indexp,
+ const long long *op);
+
+EXTERNL int
+nc_get_var1_longlong(int ncid, int varid, const size_t *indexp,
+ long long *ip);
+
+EXTERNL int
+nc_put_var1_ulonglong(int ncid, int varid, const size_t *indexp,
+ const unsigned long long *op);
+
+EXTERNL int
+nc_get_var1_ulonglong(int ncid, int varid, const size_t *indexp,
+ unsigned long long *ip);
+
+EXTERNL int
+nc_put_var1_string(int ncid, int varid, const size_t *indexp,
+ const char **op);
+
+EXTERNL int
+nc_get_var1_string(int ncid, int varid, const size_t *indexp,
+ char **ip);
+
+/* End {put,get}_var1 */
+/* Begin {put,get}_vara */
+
+EXTERNL int
+nc_put_vara_text(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const char *op);
+
+EXTERNL int
+nc_get_vara_text(int ncid, int varid, const size_t *startp,
+ const size_t *countp, char *ip);
+
+EXTERNL int
+nc_put_vara_uchar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const unsigned char *op);
+
+EXTERNL int
+nc_get_vara_uchar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, unsigned char *ip);
+
+EXTERNL int
+nc_put_vara_schar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const signed char *op);
+
+EXTERNL int
+nc_get_vara_schar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, signed char *ip);
+
+EXTERNL int
+nc_put_vara_short(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const short *op);
+
+EXTERNL int
+nc_get_vara_short(int ncid, int varid, const size_t *startp,
+ const size_t *countp, short *ip);
+
+EXTERNL int
+nc_put_vara_int(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const int *op);
+
+EXTERNL int
+nc_get_vara_int(int ncid, int varid, const size_t *startp,
+ const size_t *countp, int *ip);
+
+EXTERNL int
+nc_put_vara_long(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const long *op);
+
+EXTERNL int
+nc_get_vara_long(int ncid, int varid,
+ const size_t *startp, const size_t *countp, long *ip);
+
+EXTERNL int
+nc_put_vara_float(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const float *op);
+
+EXTERNL int
+nc_get_vara_float(int ncid, int varid,
+ const size_t *startp, const size_t *countp, float *ip);
+
+EXTERNL int
+nc_put_vara_double(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const double *op);
+
+EXTERNL int
+nc_get_vara_double(int ncid, int varid, const size_t *startp,
+ const size_t *countp, double *ip);
+
+EXTERNL int
+nc_put_vara_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const unsigned short *op);
+
+EXTERNL int
+nc_get_vara_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, unsigned short *ip);
+
+EXTERNL int
+nc_put_vara_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const unsigned int *op);
+
+EXTERNL int
+nc_get_vara_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, unsigned int *ip);
+
+EXTERNL int
+nc_put_vara_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const long long *op);
+
+EXTERNL int
+nc_get_vara_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, long long *ip);
+
+EXTERNL int
+nc_put_vara_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const unsigned long long *op);
+
+EXTERNL int
+nc_get_vara_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, unsigned long long *ip);
+
+EXTERNL int
+nc_put_vara_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const char **op);
+
+EXTERNL int
+nc_get_vara_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, char **ip);
+
+/* End {put,get}_vara */
+/* Begin {put,get}_vars */
+
+EXTERNL int
+nc_put_vars_text(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const char *op);
+
+EXTERNL int
+nc_get_vars_text(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ char *ip);
+
+EXTERNL int
+nc_put_vars_uchar(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const unsigned char *op);
+
+EXTERNL int
+nc_get_vars_uchar(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ unsigned char *ip);
+
+EXTERNL int
+nc_put_vars_schar(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const signed char *op);
+
+EXTERNL int
+nc_get_vars_schar(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ signed char *ip);
+
+EXTERNL int
+nc_put_vars_short(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const short *op);
+
+EXTERNL int
+nc_get_vars_short(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ short *ip);
+
+EXTERNL int
+nc_put_vars_int(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const int *op);
+
+EXTERNL int
+nc_get_vars_int(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ int *ip);
+
+EXTERNL int
+nc_put_vars_long(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const long *op);
+
+EXTERNL int
+nc_get_vars_long(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ long *ip);
+
+EXTERNL int
+nc_put_vars_float(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const float *op);
+
+EXTERNL int
+nc_get_vars_float(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ float *ip);
+
+EXTERNL int
+nc_put_vars_double(int ncid, int varid,
+ const size_t *startp, const size_t *countp, const ptrdiff_t *stridep,
+ const double *op);
+
+EXTERNL int
+nc_get_vars_double(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ double *ip);
+
+EXTERNL int
+nc_put_vars_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const unsigned short *op);
+
+EXTERNL int
+nc_get_vars_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ unsigned short *ip);
+
+EXTERNL int
+nc_put_vars_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const unsigned int *op);
+
+EXTERNL int
+nc_get_vars_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ unsigned int *ip);
+
+EXTERNL int
+nc_put_vars_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const long long *op);
+
+EXTERNL int
+nc_get_vars_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ long long *ip);
+
+EXTERNL int
+nc_put_vars_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const unsigned long long *op);
+
+EXTERNL int
+nc_get_vars_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ unsigned long long *ip);
+
+EXTERNL int
+nc_put_vars_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const char **op);
+
+EXTERNL int
+nc_get_vars_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ char **ip);
+
+/* End {put,get}_vars */
+/* Begin {put,get}_varm */
+
+EXTERNL int
+nc_put_varm_text(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const char *op);
+
+EXTERNL int
+nc_get_varm_text(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, char *ip);
+
+EXTERNL int
+nc_put_varm_uchar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const unsigned char *op);
+
+EXTERNL int
+nc_get_varm_uchar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, unsigned char *ip);
+
+EXTERNL int
+nc_put_varm_schar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const signed char *op);
+
+EXTERNL int
+nc_get_varm_schar(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, signed char *ip);
+
+EXTERNL int
+nc_put_varm_short(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const short *op);
+
+EXTERNL int
+nc_get_varm_short(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, short *ip);
+
+EXTERNL int
+nc_put_varm_int(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const int *op);
+
+EXTERNL int
+nc_get_varm_int(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, int *ip);
+
+EXTERNL int
+nc_put_varm_long(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const long *op);
+
+EXTERNL int
+nc_get_varm_long(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, long *ip);
+
+EXTERNL int
+nc_put_varm_float(int ncid, int varid,const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const float *op);
+
+EXTERNL int
+nc_get_varm_float(int ncid, int varid,const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, float *ip);
+
+EXTERNL int
+nc_put_varm_double(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t *imapp, const double *op);
+
+EXTERNL int
+nc_get_varm_double(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, double *ip);
+
+EXTERNL int
+nc_put_varm_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const unsigned short *op);
+
+EXTERNL int
+nc_get_varm_ushort(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, unsigned short *ip);
+
+EXTERNL int
+nc_put_varm_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const unsigned int *op);
+
+EXTERNL int
+nc_get_varm_uint(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, unsigned int *ip);
+
+EXTERNL int
+nc_put_varm_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const long long *op);
+
+EXTERNL int
+nc_get_varm_longlong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, long long *ip);
+
+EXTERNL int
+nc_put_varm_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const unsigned long long *op);
+
+EXTERNL int
+nc_get_varm_ulonglong(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, unsigned long long *ip);
+
+EXTERNL int
+nc_put_varm_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const char **op);
+
+EXTERNL int
+nc_get_varm_string(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, char **ip);
+
+/* End {put,get}_varm */
+/* Begin {put,get}_var */
+
+EXTERNL int
+nc_put_var_text(int ncid, int varid, const char *op);
+
+EXTERNL int
+nc_get_var_text(int ncid, int varid, char *ip);
+
+EXTERNL int
+nc_put_var_uchar(int ncid, int varid, const unsigned char *op);
+
+EXTERNL int
+nc_get_var_uchar(int ncid, int varid, unsigned char *ip);
+
+EXTERNL int
+nc_put_var_schar(int ncid, int varid, const signed char *op);
+
+EXTERNL int
+nc_get_var_schar(int ncid, int varid, signed char *ip);
+
+EXTERNL int
+nc_put_var_short(int ncid, int varid, const short *op);
+
+EXTERNL int
+nc_get_var_short(int ncid, int varid, short *ip);
+
+EXTERNL int
+nc_put_var_int(int ncid, int varid, const int *op);
+
+EXTERNL int
+nc_get_var_int(int ncid, int varid, int *ip);
+
+EXTERNL int
+nc_put_var_long(int ncid, int varid, const long *op);
+
+EXTERNL int
+nc_get_var_long(int ncid, int varid, long *ip);
+
+EXTERNL int
+nc_put_var_float(int ncid, int varid, const float *op);
+
+EXTERNL int
+nc_get_var_float(int ncid, int varid, float *ip);
+
+EXTERNL int
+nc_put_var_double(int ncid, int varid, const double *op);
+
+EXTERNL int
+nc_get_var_double(int ncid, int varid, double *ip);
+
+EXTERNL int
+nc_put_var_ushort(int ncid, int varid, const unsigned short *op);
+
+EXTERNL int
+nc_get_var_ushort(int ncid, int varid, unsigned short *ip);
+
+EXTERNL int
+nc_put_var_uint(int ncid, int varid, const unsigned int *op);
+
+EXTERNL int
+nc_get_var_uint(int ncid, int varid, unsigned int *ip);
+
+EXTERNL int
+nc_put_var_longlong(int ncid, int varid, const long long *op);
+
+EXTERNL int
+nc_get_var_longlong(int ncid, int varid, long long *ip);
+
+EXTERNL int
+nc_put_var_ulonglong(int ncid, int varid, const unsigned long long *op);
+
+EXTERNL int
+nc_get_var_ulonglong(int ncid, int varid, unsigned long long *ip);
+
+EXTERNL int
+nc_put_var_string(int ncid, int varid, const char **op);
+
+EXTERNL int
+nc_get_var_string(int ncid, int varid, char **ip);
+
+/* Begin Deprecated, same as functions with "_ubyte" replaced by "_uchar" */
+EXTERNL int
+nc_put_att_ubyte(int ncid, int varid, const char *name, nc_type xtype,
+ size_t len, const unsigned char *op);
+EXTERNL int
+nc_get_att_ubyte(int ncid, int varid, const char *name,
+ unsigned char *ip);
+EXTERNL int
+nc_put_var1_ubyte(int ncid, int varid, const size_t *indexp,
+ const unsigned char *op);
+EXTERNL int
+nc_get_var1_ubyte(int ncid, int varid, const size_t *indexp,
+ unsigned char *ip);
+EXTERNL int
+nc_put_vara_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const unsigned char *op);
+EXTERNL int
+nc_get_vara_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, unsigned char *ip);
+EXTERNL int
+nc_put_vars_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const unsigned char *op);
+EXTERNL int
+nc_get_vars_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ unsigned char *ip);
+EXTERNL int
+nc_put_varm_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, const unsigned char *op);
+EXTERNL int
+nc_get_varm_ubyte(int ncid, int varid, const size_t *startp,
+ const size_t *countp, const ptrdiff_t *stridep,
+ const ptrdiff_t * imapp, unsigned char *ip);
+EXTERNL int
+nc_put_var_ubyte(int ncid, int varid, const unsigned char *op);
+EXTERNL int
+nc_get_var_ubyte(int ncid, int varid, unsigned char *ip);
+/* End Deprecated */
+
+#ifdef LOGGING
+
+/* Set the log level. 0 shows only errors, 1 only major messages,
+ * etc., to 5, which shows way too much information. */
+EXTERNL int
+nc_set_log_level(int new_level);
+
+/* Use this to turn off logging by calling
+ nc_log_level(NC_TURN_OFF_LOGGING) */
+#define NC_TURN_OFF_LOGGING (-1)
+
+#else /* not LOGGING */
+
+#define nc_set_log_level(e)
+
+#endif /* LOGGING */
+
+/* Show the netCDF library's in-memory metadata for a file. */
+EXTERNL int
+nc_show_metadata(int ncid);
+
+/* End {put,get}_var */
+
+/* #ifdef _CRAYMPP */
+/*
+ * Public interfaces to better support
+ * CRAY multi-processor systems like T3E.
+ * A tip of the hat to NERSC.
+ */
+/*
+ * It turns out we need to declare and define
+ * these public interfaces on all platforms
+ * or things get ugly working out the
+ * FORTRAN interface. On !_CRAYMPP platforms,
+ * these functions work as advertised, but you
+ * can only use "processor element" 0.
+ */
+
+EXTERNL int
+nc__create_mp(const char *path, int cmode, size_t initialsz, int basepe,
+ size_t *chunksizehintp, int *ncidp);
+
+EXTERNL int
+nc__open_mp(const char *path, int mode, int basepe,
+ size_t *chunksizehintp, int *ncidp);
+
+EXTERNL int
+nc_delete(const char *path);
+
+EXTERNL int
+nc_delete_mp(const char *path, int basepe);
+
+EXTERNL int
+nc_set_base_pe(int ncid, int pe);
+
+EXTERNL int
+nc_inq_base_pe(int ncid, int *pe);
+
+/* #endif _CRAYMPP */
+
+/* This v2 function is used in the nc_test program. */
+EXTERNL int
+nctypelen(nc_type datatype);
+
+/* Begin v2.4 backward compatibility */
+/*
+ * defining NO_NETCDF_2 to the preprocessor
+ * turns off backward compatibility declarations.
+ */
+#ifndef NO_NETCDF_2
+
+/** Backward compatible alias. */
+/**@{*/
+#define FILL_BYTE NC_FILL_BYTE
+#define FILL_CHAR NC_FILL_CHAR
+#define FILL_SHORT NC_FILL_SHORT
+#define FILL_LONG NC_FILL_INT
+#define FILL_FLOAT NC_FILL_FLOAT
+#define FILL_DOUBLE NC_FILL_DOUBLE
+
+#define MAX_NC_DIMS NC_MAX_DIMS
+#define MAX_NC_ATTRS NC_MAX_ATTRS
+#define MAX_NC_VARS NC_MAX_VARS
+#define MAX_NC_NAME NC_MAX_NAME
+#define MAX_VAR_DIMS NC_MAX_VAR_DIMS
+/**@}*/
+
+
+/*
+ * Global error status
+ */
+EXTERNL int ncerr;
+
+#define NC_ENTOOL NC_EMAXNAME /* Backward compatibility */
+#define NC_EXDR (-32) /* */
+#define NC_SYSERR (-31)
+
+/*
+ * Global options variable.
+ * Used to determine behavior of error handler.
+ */
+#define NC_FATAL 1
+#define NC_VERBOSE 2
+
+EXTERNL int ncopts; /* default is (NC_FATAL | NC_VERBOSE) */
+
+EXTERNL void
+nc_advise(const char *cdf_routine_name, int err, const char *fmt,...);
+
+/*
+ * C data type corresponding to a netCDF NC_LONG argument,
+ * a signed 32 bit object.
+ *
+ * This is the only thing in this file which architecture dependent.
+ */
+typedef int nclong;
+
+EXTERNL int
+nccreate(const char* path, int cmode);
+
+EXTERNL int
+ncopen(const char* path, int mode);
+
+EXTERNL int
+ncsetfill(int ncid, int fillmode);
+
+EXTERNL int
+ncredef(int ncid);
+
+EXTERNL int
+ncendef(int ncid);
+
+EXTERNL int
+ncsync(int ncid);
+
+EXTERNL int
+ncabort(int ncid);
+
+EXTERNL int
+ncclose(int ncid);
+
+EXTERNL int
+ncinquire(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimp);
+
+EXTERNL int
+ncdimdef(int ncid, const char *name, long len);
+
+EXTERNL int
+ncdimid(int ncid, const char *name);
+
+EXTERNL int
+ncdiminq(int ncid, int dimid, char *name, long *lenp);
+
+EXTERNL int
+ncdimrename(int ncid, int dimid, const char *name);
+
+EXTERNL int
+ncattput(int ncid, int varid, const char *name, nc_type xtype,
+ int len, const void *op);
+
+EXTERNL int
+ncattinq(int ncid, int varid, const char *name, nc_type *xtypep, int *lenp);
+
+EXTERNL int
+ncattget(int ncid, int varid, const char *name, void *ip);
+
+EXTERNL int
+ncattcopy(int ncid_in, int varid_in, const char *name, int ncid_out,
+ int varid_out);
+
+EXTERNL int
+ncattname(int ncid, int varid, int attnum, char *name);
+
+EXTERNL int
+ncattrename(int ncid, int varid, const char *name, const char *newname);
+
+EXTERNL int
+ncattdel(int ncid, int varid, const char *name);
+
+EXTERNL int
+ncvardef(int ncid, const char *name, nc_type xtype,
+ int ndims, const int *dimidsp);
+
+EXTERNL int
+ncvarid(int ncid, const char *name);
+
+EXTERNL int
+ncvarinq(int ncid, int varid, char *name, nc_type *xtypep,
+ int *ndimsp, int *dimidsp, int *nattsp);
+
+EXTERNL int
+ncvarput1(int ncid, int varid, const long *indexp, const void *op);
+
+EXTERNL int
+ncvarget1(int ncid, int varid, const long *indexp, void *ip);
+
+EXTERNL int
+ncvarput(int ncid, int varid, const long *startp, const long *countp,
+ const void *op);
+
+EXTERNL int
+ncvarget(int ncid, int varid, const long *startp, const long *countp,
+ void *ip);
+
+EXTERNL int
+ncvarputs(int ncid, int varid, const long *startp, const long *countp,
+ const long *stridep, const void *op);
+
+EXTERNL int
+ncvargets(int ncid, int varid, const long *startp, const long *countp,
+ const long *stridep, void *ip);
+
+EXTERNL int
+ncvarputg(int ncid, int varid, const long *startp, const long *countp,
+ const long *stridep, const long *imapp, const void *op);
+
+EXTERNL int
+ncvargetg(int ncid, int varid, const long *startp, const long *countp,
+ const long *stridep, const long *imapp, void *ip);
+
+EXTERNL int
+ncvarrename(int ncid, int varid, const char *name);
+
+EXTERNL int
+ncrecinq(int ncid, int *nrecvarsp, int *recvaridsp, long *recsizesp);
+
+EXTERNL int
+ncrecget(int ncid, long recnum, void **datap);
+
+EXTERNL int
+ncrecput(int ncid, long recnum, void *const *datap);
+
+/* EXTERNL int nc_finalize(); */
+
+/* End v2.4 backward compatibility */
+#endif /*!NO_NETCDF_2*/
+
+#if defined(__cplusplus)
+}
+#endif
+
+/* Temporary hack to shut up warnings */
+#ifndef __MINGW32_VERSION
+#define END_OF_MAIN()
+#endif
+
+/* Define two hard-coded functionality-related
+ macros, but this is not going to be
+ standard practice. */
+#ifndef NC_HAVE_RENAME_GRP
+#define NC_HAVE_RENAME_GRP /*!< rename_grp() support. */
+#endif
+
+#ifndef NC_HAVE_INQ_FORMAT_EXTENDED
+#define NC_HAVE_INQ_FORMAT_EXTENDED /*!< inq_format_extended() support. */
+#endif
+
+#define NC_HAVE_META_H
+
+#endif /* _NETCDF_ */
diff --git a/privatemodules/nc4/include/netcdf.inc b/privatemodules/nc4/include/netcdf.inc
new file mode 100644
index 0000000000000000000000000000000000000000..1371bcb52d841c5e815043e2637b74296ad1c059
--- /dev/null
+++ b/privatemodules/nc4/include/netcdf.inc
@@ -0,0 +1,1740 @@
+! NetCDF-3.
+!
+! netcdf version 3 fortran interface:
+!
+
+!
+! external netcdf data types:
+!
+ integer nf_byte
+ integer nf_int1
+ integer nf_char
+ integer nf_short
+ integer nf_int2
+ integer nf_int
+ integer nf_float
+ integer nf_real
+ integer nf_double
+
+ parameter (nf_byte = 1)
+ parameter (nf_int1 = nf_byte)
+ parameter (nf_char = 2)
+ parameter (nf_short = 3)
+ parameter (nf_int2 = nf_short)
+ parameter (nf_int = 4)
+ parameter (nf_float = 5)
+ parameter (nf_real = nf_float)
+ parameter (nf_double = 6)
+
+!
+! default fill values:
+!
+ integer nf_fill_byte
+ integer nf_fill_int1
+ integer nf_fill_char
+ integer nf_fill_short
+ integer nf_fill_int2
+ integer nf_fill_int
+ real nf_fill_float
+ real nf_fill_real
+ doubleprecision nf_fill_double
+
+ parameter (nf_fill_byte = -127)
+ parameter (nf_fill_int1 = nf_fill_byte)
+ parameter (nf_fill_char = 0)
+ parameter (nf_fill_short = -32767)
+ parameter (nf_fill_int2 = nf_fill_short)
+ parameter (nf_fill_int = -2147483647)
+ parameter (nf_fill_float = 9.9692099683868690e+36)
+ parameter (nf_fill_real = nf_fill_float)
+ parameter (nf_fill_double = 9.9692099683868690d+36)
+
+!
+! mode flags for opening and creating a netcdf dataset:
+!
+ integer nf_nowrite
+ integer nf_write
+ integer nf_clobber
+ integer nf_noclobber
+ integer nf_fill
+ integer nf_nofill
+ integer nf_lock
+ integer nf_share
+ integer nf_64bit_offset
+ integer nf_sizehint_default
+ integer nf_align_chunk
+ integer nf_format_classic
+ integer nf_format_64bit
+ integer nf_diskless
+ integer nf_mmap
+
+ parameter (nf_nowrite = 0)
+ parameter (nf_write = 1)
+ parameter (nf_clobber = 0)
+ parameter (nf_noclobber = 4)
+ parameter (nf_fill = 0)
+ parameter (nf_nofill = 256)
+ parameter (nf_lock = 1024)
+ parameter (nf_share = 2048)
+ parameter (nf_64bit_offset = 512)
+ parameter (nf_sizehint_default = 0)
+ parameter (nf_align_chunk = -1)
+ parameter (nf_format_classic = 1)
+ parameter (nf_format_64bit = 2)
+ parameter (nf_diskless = 8)
+ parameter (nf_mmap = 16)
+
+!
+! size argument for defining an unlimited dimension:
+!
+ integer nf_unlimited
+ parameter (nf_unlimited = 0)
+
+!
+! global attribute id:
+!
+ integer nf_global
+ parameter (nf_global = 0)
+
+!
+! implementation limits:
+!
+ integer nf_max_dims
+ integer nf_max_attrs
+ integer nf_max_vars
+ integer nf_max_name
+ integer nf_max_var_dims
+
+ parameter (nf_max_dims = 1024)
+ parameter (nf_max_attrs = 8192)
+ parameter (nf_max_vars = 8192)
+ parameter (nf_max_name = 256)
+ parameter (nf_max_var_dims = nf_max_dims)
+
+!
+! error codes:
+!
+ integer nf_noerr
+ integer nf_ebadid
+ integer nf_eexist
+ integer nf_einval
+ integer nf_eperm
+ integer nf_enotindefine
+ integer nf_eindefine
+ integer nf_einvalcoords
+ integer nf_emaxdims
+ integer nf_enameinuse
+ integer nf_enotatt
+ integer nf_emaxatts
+ integer nf_ebadtype
+ integer nf_ebaddim
+ integer nf_eunlimpos
+ integer nf_emaxvars
+ integer nf_enotvar
+ integer nf_eglobal
+ integer nf_enotnc
+ integer nf_ests
+ integer nf_emaxname
+ integer nf_eunlimit
+ integer nf_enorecvars
+ integer nf_echar
+ integer nf_eedge
+ integer nf_estride
+ integer nf_ebadname
+ integer nf_erange
+ integer nf_enomem
+ integer nf_evarsize
+ integer nf_edimsize
+ integer nf_etrunc
+
+ parameter (nf_noerr = 0)
+ parameter (nf_ebadid = -33)
+ parameter (nf_eexist = -35)
+ parameter (nf_einval = -36)
+ parameter (nf_eperm = -37)
+ parameter (nf_enotindefine = -38)
+ parameter (nf_eindefine = -39)
+ parameter (nf_einvalcoords = -40)
+ parameter (nf_emaxdims = -41)
+ parameter (nf_enameinuse = -42)
+ parameter (nf_enotatt = -43)
+ parameter (nf_emaxatts = -44)
+ parameter (nf_ebadtype = -45)
+ parameter (nf_ebaddim = -46)
+ parameter (nf_eunlimpos = -47)
+ parameter (nf_emaxvars = -48)
+ parameter (nf_enotvar = -49)
+ parameter (nf_eglobal = -50)
+ parameter (nf_enotnc = -51)
+ parameter (nf_ests = -52)
+ parameter (nf_emaxname = -53)
+ parameter (nf_eunlimit = -54)
+ parameter (nf_enorecvars = -55)
+ parameter (nf_echar = -56)
+ parameter (nf_eedge = -57)
+ parameter (nf_estride = -58)
+ parameter (nf_ebadname = -59)
+ parameter (nf_erange = -60)
+ parameter (nf_enomem = -61)
+ parameter (nf_evarsize = -62)
+ parameter (nf_edimsize = -63)
+ parameter (nf_etrunc = -64)
+!
+! error handling modes:
+!
+ integer nf_fatal
+ integer nf_verbose
+
+ parameter (nf_fatal = 1)
+ parameter (nf_verbose = 2)
+
+!
+! miscellaneous routines:
+!
+ character*80 nf_inq_libvers
+ external nf_inq_libvers
+
+ character*80 nf_strerror
+! (integer ncerr)
+ external nf_strerror
+
+ logical nf_issyserr
+! (integer ncerr)
+ external nf_issyserr
+
+!
+! control routines:
+!
+ integer nf_inq_base_pe
+! (integer ncid,
+! integer pe)
+ external nf_inq_base_pe
+
+ integer nf_set_base_pe
+! (integer ncid,
+! integer pe)
+ external nf_set_base_pe
+
+ integer nf_create
+! (character*(*) path,
+! integer cmode,
+! integer ncid)
+ external nf_create
+
+ integer nf__create
+! (character*(*) path,
+! integer cmode,
+! integer initialsz,
+! integer chunksizehint,
+! integer ncid)
+ external nf__create
+
+ integer nf__create_mp
+! (character*(*) path,
+! integer cmode,
+! integer initialsz,
+! integer basepe,
+! integer chunksizehint,
+! integer ncid)
+ external nf__create_mp
+
+ integer nf_open
+! (character*(*) path,
+! integer mode,
+! integer ncid)
+ external nf_open
+
+ integer nf__open
+! (character*(*) path,
+! integer mode,
+! integer chunksizehint,
+! integer ncid)
+ external nf__open
+
+ integer nf__open_mp
+! (character*(*) path,
+! integer mode,
+! integer basepe,
+! integer chunksizehint,
+! integer ncid)
+ external nf__open_mp
+
+ integer nf_set_fill
+! (integer ncid,
+! integer fillmode,
+! integer old_mode)
+ external nf_set_fill
+
+ integer nf_set_default_format
+! (integer format,
+! integer old_format)
+ external nf_set_default_format
+
+ integer nf_redef
+! (integer ncid)
+ external nf_redef
+
+ integer nf_enddef
+! (integer ncid)
+ external nf_enddef
+
+ integer nf__enddef
+! (integer ncid,
+! integer h_minfree,
+! integer v_align,
+! integer v_minfree,
+! integer r_align)
+ external nf__enddef
+
+ integer nf_sync
+! (integer ncid)
+ external nf_sync
+
+ integer nf_abort
+! (integer ncid)
+ external nf_abort
+
+ integer nf_close
+! (integer ncid)
+ external nf_close
+
+ integer nf_delete
+! (character*(*) ncid)
+ external nf_delete
+
+!
+! general inquiry routines:
+!
+
+ integer nf_inq
+! (integer ncid,
+! integer ndims,
+! integer nvars,
+! integer ngatts,
+! integer unlimdimid)
+ external nf_inq
+
+! new inquire path
+
+ integer nf_inq_path
+ external nf_inq_path
+
+ integer nf_inq_ndims
+! (integer ncid,
+! integer ndims)
+ external nf_inq_ndims
+
+ integer nf_inq_nvars
+! (integer ncid,
+! integer nvars)
+ external nf_inq_nvars
+
+ integer nf_inq_natts
+! (integer ncid,
+! integer ngatts)
+ external nf_inq_natts
+
+ integer nf_inq_unlimdim
+! (integer ncid,
+! integer unlimdimid)
+ external nf_inq_unlimdim
+
+ integer nf_inq_format
+! (integer ncid,
+! integer format)
+ external nf_inq_format
+
+!
+! dimension routines:
+!
+
+ integer nf_def_dim
+! (integer ncid,
+! character(*) name,
+! integer len,
+! integer dimid)
+ external nf_def_dim
+
+ integer nf_inq_dimid
+! (integer ncid,
+! character(*) name,
+! integer dimid)
+ external nf_inq_dimid
+
+ integer nf_inq_dim
+! (integer ncid,
+! integer dimid,
+! character(*) name,
+! integer len)
+ external nf_inq_dim
+
+ integer nf_inq_dimname
+! (integer ncid,
+! integer dimid,
+! character(*) name)
+ external nf_inq_dimname
+
+ integer nf_inq_dimlen
+! (integer ncid,
+! integer dimid,
+! integer len)
+ external nf_inq_dimlen
+
+ integer nf_rename_dim
+! (integer ncid,
+! integer dimid,
+! character(*) name)
+ external nf_rename_dim
+
+!
+! general attribute routines:
+!
+
+ integer nf_inq_att
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len)
+ external nf_inq_att
+
+ integer nf_inq_attid
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer attnum)
+ external nf_inq_attid
+
+ integer nf_inq_atttype
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype)
+ external nf_inq_atttype
+
+ integer nf_inq_attlen
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer len)
+ external nf_inq_attlen
+
+ integer nf_inq_attname
+! (integer ncid,
+! integer varid,
+! integer attnum,
+! character(*) name)
+ external nf_inq_attname
+
+ integer nf_copy_att
+! (integer ncid_in,
+! integer varid_in,
+! character(*) name,
+! integer ncid_out,
+! integer varid_out)
+ external nf_copy_att
+
+ integer nf_rename_att
+! (integer ncid,
+! integer varid,
+! character(*) curname,
+! character(*) newname)
+ external nf_rename_att
+
+ integer nf_del_att
+! (integer ncid,
+! integer varid,
+! character(*) name)
+ external nf_del_att
+
+!
+! attribute put/get routines:
+!
+
+ integer nf_put_att_text
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer len,
+! character(*) text)
+ external nf_put_att_text
+
+ integer nf_get_att_text
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! character(*) text)
+ external nf_get_att_text
+
+ integer nf_put_att_int1
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len,
+! nf_int1_t i1vals(1))
+ external nf_put_att_int1
+
+ integer nf_get_att_int1
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! nf_int1_t i1vals(1))
+ external nf_get_att_int1
+
+ integer nf_put_att_int2
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len,
+! nf_int2_t i2vals(1))
+ external nf_put_att_int2
+
+ integer nf_get_att_int2
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! nf_int2_t i2vals(1))
+ external nf_get_att_int2
+
+ integer nf_put_att_int
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len,
+! integer ivals(1))
+ external nf_put_att_int
+
+ integer nf_get_att_int
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer ivals(1))
+ external nf_get_att_int
+
+ integer nf_put_att_real
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len,
+! real rvals(1))
+ external nf_put_att_real
+
+ integer nf_get_att_real
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! real rvals(1))
+ external nf_get_att_real
+
+ integer nf_put_att_double
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer xtype,
+! integer len,
+! double dvals(1))
+ external nf_put_att_double
+
+ integer nf_get_att_double
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! double dvals(1))
+ external nf_get_att_double
+
+!
+! general variable routines:
+!
+
+ integer nf_def_var
+! (integer ncid,
+! character(*) name,
+! integer datatype,
+! integer ndims,
+! integer dimids(1),
+! integer varid)
+ external nf_def_var
+
+ integer nf_inq_var
+! (integer ncid,
+! integer varid,
+! character(*) name,
+! integer datatype,
+! integer ndims,
+! integer dimids(1),
+! integer natts)
+ external nf_inq_var
+
+ integer nf_inq_varid
+! (integer ncid,
+! character(*) name,
+! integer varid)
+ external nf_inq_varid
+
+ integer nf_inq_varname
+! (integer ncid,
+! integer varid,
+! character(*) name)
+ external nf_inq_varname
+
+ integer nf_inq_vartype
+! (integer ncid,
+! integer varid,
+! integer xtype)
+ external nf_inq_vartype
+
+ integer nf_inq_varndims
+! (integer ncid,
+! integer varid,
+! integer ndims)
+ external nf_inq_varndims
+
+ integer nf_inq_vardimid
+! (integer ncid,
+! integer varid,
+! integer dimids(1))
+ external nf_inq_vardimid
+
+ integer nf_inq_varnatts
+! (integer ncid,
+! integer varid,
+! integer natts)
+ external nf_inq_varnatts
+
+ integer nf_rename_var
+! (integer ncid,
+! integer varid,
+! character(*) name)
+ external nf_rename_var
+
+ integer nf_copy_var
+! (integer ncid_in,
+! integer varid,
+! integer ncid_out)
+ external nf_copy_var
+
+!
+! entire variable put/get routines:
+!
+
+ integer nf_put_var_text
+! (integer ncid,
+! integer varid,
+! character(*) text)
+ external nf_put_var_text
+
+ integer nf_get_var_text
+! (integer ncid,
+! integer varid,
+! character(*) text)
+ external nf_get_var_text
+
+ integer nf_put_var_int1
+! (integer ncid,
+! integer varid,
+! nf_int1_t i1vals(1))
+ external nf_put_var_int1
+
+ integer nf_get_var_int1
+! (integer ncid,
+! integer varid,
+! nf_int1_t i1vals(1))
+ external nf_get_var_int1
+
+ integer nf_put_var_int2
+! (integer ncid,
+! integer varid,
+! nf_int2_t i2vals(1))
+ external nf_put_var_int2
+
+ integer nf_get_var_int2
+! (integer ncid,
+! integer varid,
+! nf_int2_t i2vals(1))
+ external nf_get_var_int2
+
+ integer nf_put_var_int
+! (integer ncid,
+! integer varid,
+! integer ivals(1))
+ external nf_put_var_int
+
+ integer nf_get_var_int
+! (integer ncid,
+! integer varid,
+! integer ivals(1))
+ external nf_get_var_int
+
+ integer nf_put_var_real
+! (integer ncid,
+! integer varid,
+! real rvals(1))
+ external nf_put_var_real
+
+ integer nf_get_var_real
+! (integer ncid,
+! integer varid,
+! real rvals(1))
+ external nf_get_var_real
+
+ integer nf_put_var_double
+! (integer ncid,
+! integer varid,
+! doubleprecision dvals(1))
+ external nf_put_var_double
+
+ integer nf_get_var_double
+! (integer ncid,
+! integer varid,
+! doubleprecision dvals(1))
+ external nf_get_var_double
+
+!
+! single variable put/get routines:
+!
+
+ integer nf_put_var1_text
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! character*1 text)
+ external nf_put_var1_text
+
+ integer nf_get_var1_text
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! character*1 text)
+ external nf_get_var1_text
+
+ integer nf_put_var1_int1
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! nf_int1_t i1val)
+ external nf_put_var1_int1
+
+ integer nf_get_var1_int1
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! nf_int1_t i1val)
+ external nf_get_var1_int1
+
+ integer nf_put_var1_int2
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! nf_int2_t i2val)
+ external nf_put_var1_int2
+
+ integer nf_get_var1_int2
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! nf_int2_t i2val)
+ external nf_get_var1_int2
+
+ integer nf_put_var1_int
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! integer ival)
+ external nf_put_var1_int
+
+ integer nf_get_var1_int
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! integer ival)
+ external nf_get_var1_int
+
+ integer nf_put_var1_real
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! real rval)
+ external nf_put_var1_real
+
+ integer nf_get_var1_real
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! real rval)
+ external nf_get_var1_real
+
+ integer nf_put_var1_double
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! doubleprecision dval)
+ external nf_put_var1_double
+
+ integer nf_get_var1_double
+! (integer ncid,
+! integer varid,
+! integer index(1),
+! doubleprecision dval)
+ external nf_get_var1_double
+
+!
+! variable array put/get routines:
+!
+
+ integer nf_put_vara_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! character(*) text)
+ external nf_put_vara_text
+
+ integer nf_get_vara_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! character(*) text)
+ external nf_get_vara_text
+
+ integer nf_put_vara_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! nf_int1_t i1vals(1))
+ external nf_put_vara_int1
+
+ integer nf_get_vara_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! nf_int1_t i1vals(1))
+ external nf_get_vara_int1
+
+ integer nf_put_vara_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! nf_int2_t i2vals(1))
+ external nf_put_vara_int2
+
+ integer nf_get_vara_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! nf_int2_t i2vals(1))
+ external nf_get_vara_int2
+
+ integer nf_put_vara_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer ivals(1))
+ external nf_put_vara_int
+
+ integer nf_get_vara_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer ivals(1))
+ external nf_get_vara_int
+
+ integer nf_put_vara_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! real rvals(1))
+ external nf_put_vara_real
+
+ integer nf_get_vara_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! real rvals(1))
+ external nf_get_vara_real
+
+ integer nf_put_vara_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! doubleprecision dvals(1))
+ external nf_put_vara_double
+
+ integer nf_get_vara_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! doubleprecision dvals(1))
+ external nf_get_vara_double
+
+!
+! strided variable put/get routines:
+!
+
+ integer nf_put_vars_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! character(*) text)
+ external nf_put_vars_text
+
+ integer nf_get_vars_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! character(*) text)
+ external nf_get_vars_text
+
+ integer nf_put_vars_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! nf_int1_t i1vals(1))
+ external nf_put_vars_int1
+
+ integer nf_get_vars_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! nf_int1_t i1vals(1))
+ external nf_get_vars_int1
+
+ integer nf_put_vars_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! nf_int2_t i2vals(1))
+ external nf_put_vars_int2
+
+ integer nf_get_vars_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! nf_int2_t i2vals(1))
+ external nf_get_vars_int2
+
+ integer nf_put_vars_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer ivals(1))
+ external nf_put_vars_int
+
+ integer nf_get_vars_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer ivals(1))
+ external nf_get_vars_int
+
+ integer nf_put_vars_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! real rvals(1))
+ external nf_put_vars_real
+
+ integer nf_get_vars_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! real rvals(1))
+ external nf_get_vars_real
+
+ integer nf_put_vars_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! doubleprecision dvals(1))
+ external nf_put_vars_double
+
+ integer nf_get_vars_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! doubleprecision dvals(1))
+ external nf_get_vars_double
+
+!
+! mapped variable put/get routines:
+!
+
+ integer nf_put_varm_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! character(*) text)
+ external nf_put_varm_text
+
+ integer nf_get_varm_text
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! character(*) text)
+ external nf_get_varm_text
+
+ integer nf_put_varm_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! nf_int1_t i1vals(1))
+ external nf_put_varm_int1
+
+ integer nf_get_varm_int1
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! nf_int1_t i1vals(1))
+ external nf_get_varm_int1
+
+ integer nf_put_varm_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! nf_int2_t i2vals(1))
+ external nf_put_varm_int2
+
+ integer nf_get_varm_int2
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! nf_int2_t i2vals(1))
+ external nf_get_varm_int2
+
+ integer nf_put_varm_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! integer ivals(1))
+ external nf_put_varm_int
+
+ integer nf_get_varm_int
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! integer ivals(1))
+ external nf_get_varm_int
+
+ integer nf_put_varm_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! real rvals(1))
+ external nf_put_varm_real
+
+ integer nf_get_varm_real
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! real rvals(1))
+ external nf_get_varm_real
+
+ integer nf_put_varm_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! doubleprecision dvals(1))
+ external nf_put_varm_double
+
+ integer nf_get_varm_double
+! (integer ncid,
+! integer varid,
+! integer start(1),
+! integer count(1),
+! integer stride(1),
+! integer imap(1),
+! doubleprecision dvals(1))
+ external nf_get_varm_double
+
+
+! NetCDF-4.
+! This is part of netCDF-4. Copyright 2006, UCAR, See COPYRIGHT
+! file for distribution information.
+
+! Netcdf version 4 fortran interface.
+
+! $Id: netcdf4.inc,v 1.28 2010/05/25 13:53:02 ed Exp $
+
+! New netCDF-4 types.
+ integer nf_ubyte
+ integer nf_ushort
+ integer nf_uint
+ integer nf_int64
+ integer nf_uint64
+ integer nf_string
+ integer nf_vlen
+ integer nf_opaque
+ integer nf_enum
+ integer nf_compound
+
+ parameter (nf_ubyte = 7)
+ parameter (nf_ushort = 8)
+ parameter (nf_uint = 9)
+ parameter (nf_int64 = 10)
+ parameter (nf_uint64 = 11)
+ parameter (nf_string = 12)
+ parameter (nf_vlen = 13)
+ parameter (nf_opaque = 14)
+ parameter (nf_enum = 15)
+ parameter (nf_compound = 16)
+
+! New netCDF-4 fill values.
+ integer nf_fill_ubyte
+ integer nf_fill_ushort
+! real nf_fill_uint
+! real nf_fill_int64
+! real nf_fill_uint64
+ parameter (nf_fill_ubyte = 255)
+ parameter (nf_fill_ushort = 65535)
+
+! New constants.
+ integer nf_format_netcdf4
+ parameter (nf_format_netcdf4 = 3)
+
+ integer nf_format_netcdf4_classic
+ parameter (nf_format_netcdf4_classic = 4)
+
+ integer nf_netcdf4
+ parameter (nf_netcdf4 = 4096)
+
+ integer nf_classic_model
+ parameter (nf_classic_model = 256)
+
+ integer nf_chunk_seq
+ parameter (nf_chunk_seq = 0)
+ integer nf_chunk_sub
+ parameter (nf_chunk_sub = 1)
+ integer nf_chunk_sizes
+ parameter (nf_chunk_sizes = 2)
+
+ integer nf_endian_native
+ parameter (nf_endian_native = 0)
+ integer nf_endian_little
+ parameter (nf_endian_little = 1)
+ integer nf_endian_big
+ parameter (nf_endian_big = 2)
+
+! For NF_DEF_VAR_CHUNKING
+ integer nf_chunked
+ parameter (nf_chunked = 0)
+ integer nf_contiguous
+ parameter (nf_contiguous = 1)
+
+! For NF_DEF_VAR_FLETCHER32
+ integer nf_nochecksum
+ parameter (nf_nochecksum = 0)
+ integer nf_fletcher32
+ parameter (nf_fletcher32 = 1)
+
+! For NF_DEF_VAR_DEFLATE
+ integer nf_noshuffle
+ parameter (nf_noshuffle = 0)
+ integer nf_shuffle
+ parameter (nf_shuffle = 1)
+
+! For NF_DEF_VAR_SZIP
+ integer nf_szip_ec_option_mask
+ parameter (nf_szip_ec_option_mask = 4)
+ integer nf_szip_nn_option_mask
+ parameter (nf_szip_nn_option_mask = 32)
+
+! For parallel I/O.
+ integer nf_mpiio
+ parameter (nf_mpiio = 8192)
+ integer nf_mpiposix
+ parameter (nf_mpiposix = 16384)
+ integer nf_pnetcdf
+ parameter (nf_pnetcdf = 32768)
+
+! For NF_VAR_PAR_ACCESS.
+ integer nf_independent
+ parameter (nf_independent = 0)
+ integer nf_collective
+ parameter (nf_collective = 1)
+
+! New error codes.
+ integer nf_ehdferr ! Error at HDF5 layer.
+ parameter (nf_ehdferr = -101)
+ integer nf_ecantread ! Can't read.
+ parameter (nf_ecantread = -102)
+ integer nf_ecantwrite ! Can't write.
+ parameter (nf_ecantwrite = -103)
+ integer nf_ecantcreate ! Can't create.
+ parameter (nf_ecantcreate = -104)
+ integer nf_efilemeta ! Problem with file metadata.
+ parameter (nf_efilemeta = -105)
+ integer nf_edimmeta ! Problem with dimension metadata.
+ parameter (nf_edimmeta = -106)
+ integer nf_eattmeta ! Problem with attribute metadata.
+ parameter (nf_eattmeta = -107)
+ integer nf_evarmeta ! Problem with variable metadata.
+ parameter (nf_evarmeta = -108)
+ integer nf_enocompound ! Not a compound type.
+ parameter (nf_enocompound = -109)
+ integer nf_eattexists ! Attribute already exists.
+ parameter (nf_eattexists = -110)
+ integer nf_enotnc4 ! Attempting netcdf-4 operation on netcdf-3 file.
+ parameter (nf_enotnc4 = -111)
+ integer nf_estrictnc3 ! Attempting netcdf-4 operation on strict nc3 netcdf-4 file.
+ parameter (nf_estrictnc3 = -112)
+ integer nf_enotnc3 ! Attempting netcdf-3 operation on netcdf-4 file.
+ parameter (nf_enotnc3 = -113)
+ integer nf_enopar ! Parallel operation on file opened for non-parallel access.
+ parameter (nf_enopar = -114)
+ integer nf_eparinit ! Error initializing for parallel access.
+ parameter (nf_eparinit = -115)
+ integer nf_ebadgrpid ! Bad group ID.
+ parameter (nf_ebadgrpid = -116)
+ integer nf_ebadtypid ! Bad type ID.
+ parameter (nf_ebadtypid = -117)
+ integer nf_etypdefined ! Type has already been defined and may not be edited.
+ parameter (nf_etypdefined = -118)
+ integer nf_ebadfield ! Bad field ID.
+ parameter (nf_ebadfield = -119)
+ integer nf_ebadclass ! Bad class.
+ parameter (nf_ebadclass = -120)
+ integer nf_emaptype ! Mapped access for atomic types only.
+ parameter (nf_emaptype = -121)
+ integer nf_elatefill ! Attempt to define fill value when data already exists.
+ parameter (nf_elatefill = -122)
+ integer nf_elatedef ! Attempt to define var properties, like deflate, after enddef.
+ parameter (nf_elatedef = -123)
+ integer nf_edimscale ! Probem with HDF5 dimscales.
+ parameter (nf_edimscale = -124)
+ integer nf_enogrp ! No group found.
+ parameter (nf_enogrp = -125)
+
+
+! New functions.
+
+! Parallel I/O.
+ integer nf_create_par
+ external nf_create_par
+
+ integer nf_open_par
+ external nf_open_par
+
+ integer nf_var_par_access
+ external nf_var_par_access
+
+! Functions to handle groups.
+ integer nf_inq_ncid
+ external nf_inq_ncid
+
+ integer nf_inq_grps
+ external nf_inq_grps
+
+ integer nf_inq_grpname
+ external nf_inq_grpname
+
+ integer nf_inq_grpname_full
+ external nf_inq_grpname_full
+
+ integer nf_inq_grpname_len
+ external nf_inq_grpname_len
+
+ integer nf_inq_grp_parent
+ external nf_inq_grp_parent
+
+ integer nf_inq_grp_ncid
+ external nf_inq_grp_ncid
+
+ integer nf_inq_grp_full_ncid
+ external nf_inq_grp_full_ncid
+
+ integer nf_inq_varids
+ external nf_inq_varids
+
+ integer nf_inq_dimids
+ external nf_inq_dimids
+
+ integer nf_def_grp
+ external nf_def_grp
+
+! New rename grp function
+
+ integer nf_rename_grp
+ external nf_rename_grp
+
+! New options for netCDF variables.
+ integer nf_def_var_deflate
+ external nf_def_var_deflate
+
+ integer nf_inq_var_deflate
+ external nf_inq_var_deflate
+
+ integer nf_def_var_fletcher32
+ external nf_def_var_fletcher32
+
+ integer nf_inq_var_fletcher32
+ external nf_inq_var_fletcher32
+
+ integer nf_def_var_chunking
+ external nf_def_var_chunking
+
+ integer nf_inq_var_chunking
+ external nf_inq_var_chunking
+
+ integer nf_def_var_fill
+ external nf_def_var_fill
+
+ integer nf_inq_var_fill
+ external nf_inq_var_fill
+
+ integer nf_def_var_endian
+ external nf_def_var_endian
+
+ integer nf_inq_var_endian
+ external nf_inq_var_endian
+
+! User defined types.
+ integer nf_inq_typeids
+ external nf_inq_typeids
+
+ integer nf_inq_typeid
+ external nf_inq_typeid
+
+ integer nf_inq_type
+ external nf_inq_type
+
+ integer nf_inq_user_type
+ external nf_inq_user_type
+
+! User defined types - compound types.
+ integer nf_def_compound
+ external nf_def_compound
+
+ integer nf_insert_compound
+ external nf_insert_compound
+
+ integer nf_insert_array_compound
+ external nf_insert_array_compound
+
+ integer nf_inq_compound
+ external nf_inq_compound
+
+ integer nf_inq_compound_name
+ external nf_inq_compound_name
+
+ integer nf_inq_compound_size
+ external nf_inq_compound_size
+
+ integer nf_inq_compound_nfields
+ external nf_inq_compound_nfields
+
+ integer nf_inq_compound_field
+ external nf_inq_compound_field
+
+ integer nf_inq_compound_fieldname
+ external nf_inq_compound_fieldname
+
+ integer nf_inq_compound_fieldindex
+ external nf_inq_compound_fieldindex
+
+ integer nf_inq_compound_fieldoffset
+ external nf_inq_compound_fieldoffset
+
+ integer nf_inq_compound_fieldtype
+ external nf_inq_compound_fieldtype
+
+ integer nf_inq_compound_fieldndims
+ external nf_inq_compound_fieldndims
+
+ integer nf_inq_compound_fielddim_sizes
+ external nf_inq_compound_fielddim_sizes
+
+! User defined types - variable length arrays.
+ integer nf_def_vlen
+ external nf_def_vlen
+
+ integer nf_inq_vlen
+ external nf_inq_vlen
+
+ integer nf_free_vlen
+ external nf_free_vlen
+
+! User defined types - enums.
+ integer nf_def_enum
+ external nf_def_enum
+
+ integer nf_insert_enum
+ external nf_insert_enum
+
+ integer nf_inq_enum
+ external nf_inq_enum
+
+ integer nf_inq_enum_member
+ external nf_inq_enum_member
+
+ integer nf_inq_enum_ident
+ external nf_inq_enum_ident
+
+! User defined types - opaque.
+ integer nf_def_opaque
+ external nf_def_opaque
+
+ integer nf_inq_opaque
+ external nf_inq_opaque
+
+! Write and read attributes of any type, including user defined
+! types.
+ integer nf_put_att
+ external nf_put_att
+ integer nf_get_att
+ external nf_get_att
+
+! Write and read variables of any type, including user defined
+! types.
+ integer nf_put_var
+ external nf_put_var
+ integer nf_put_var1
+ external nf_put_var1
+ integer nf_put_vara
+ external nf_put_vara
+ integer nf_put_vars
+ external nf_put_vars
+ integer nf_get_var
+ external nf_get_var
+ integer nf_get_var1
+ external nf_get_var1
+ integer nf_get_vara
+ external nf_get_vara
+ integer nf_get_vars
+ external nf_get_vars
+
+! 64-bit int functions.
+ integer nf_put_var1_int64
+ external nf_put_var1_int64
+ integer nf_put_vara_int64
+ external nf_put_vara_int64
+ integer nf_put_vars_int64
+ external nf_put_vars_int64
+ integer nf_put_varm_int64
+ external nf_put_varm_int64
+ integer nf_put_var_int64
+ external nf_put_var_int64
+ integer nf_get_var1_int64
+ external nf_get_var1_int64
+ integer nf_get_vara_int64
+ external nf_get_vara_int64
+ integer nf_get_vars_int64
+ external nf_get_vars_int64
+ integer nf_get_varm_int64
+ external nf_get_varm_int64
+ integer nf_get_var_int64
+ external nf_get_var_int64
+
+! For helping F77 users with VLENs.
+ integer nf_get_vlen_element
+ external nf_get_vlen_element
+ integer nf_put_vlen_element
+ external nf_put_vlen_element
+
+! For dealing with file level chunk cache.
+ integer nf_set_chunk_cache
+ external nf_set_chunk_cache
+ integer nf_get_chunk_cache
+ external nf_get_chunk_cache
+
+! For dealing with per variable chunk cache.
+ integer nf_set_var_chunk_cache
+ external nf_set_var_chunk_cache
+ integer nf_get_var_chunk_cache
+ external nf_get_var_chunk_cache
+
+! NetCDF-2.
+!ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
+! begin netcdf 2.4 backward compatibility:
+!
+
+!
+! functions in the fortran interface
+!
+ integer nccre
+ integer ncopn
+ integer ncddef
+ integer ncdid
+ integer ncvdef
+ integer ncvid
+ integer nctlen
+ integer ncsfil
+
+ external nccre
+ external ncopn
+ external ncddef
+ external ncdid
+ external ncvdef
+ external ncvid
+ external nctlen
+ external ncsfil
+
+
+ integer ncrdwr
+ integer nccreat
+ integer ncexcl
+ integer ncindef
+ integer ncnsync
+ integer nchsync
+ integer ncndirty
+ integer nchdirty
+ integer nclink
+ integer ncnowrit
+ integer ncwrite
+ integer ncclob
+ integer ncnoclob
+ integer ncglobal
+ integer ncfill
+ integer ncnofill
+ integer maxncop
+ integer maxncdim
+ integer maxncatt
+ integer maxncvar
+ integer maxncnam
+ integer maxvdims
+ integer ncnoerr
+ integer ncebadid
+ integer ncenfile
+ integer nceexist
+ integer nceinval
+ integer nceperm
+ integer ncenotin
+ integer nceindef
+ integer ncecoord
+ integer ncemaxds
+ integer ncename
+ integer ncenoatt
+ integer ncemaxat
+ integer ncebadty
+ integer ncebadd
+ integer ncests
+ integer nceunlim
+ integer ncemaxvs
+ integer ncenotvr
+ integer nceglob
+ integer ncenotnc
+ integer ncfoobar
+ integer ncsyserr
+ integer ncfatal
+ integer ncverbos
+ integer ncentool
+
+
+!
+! netcdf data types:
+!
+ integer ncbyte
+ integer ncchar
+ integer ncshort
+ integer nclong
+ integer ncfloat
+ integer ncdouble
+
+ parameter(ncbyte = 1)
+ parameter(ncchar = 2)
+ parameter(ncshort = 3)
+ parameter(nclong = 4)
+ parameter(ncfloat = 5)
+ parameter(ncdouble = 6)
+
+!
+! masks for the struct nc flag field; passed in as 'mode' arg to
+! nccreate and ncopen.
+!
+
+! read/write, 0 => readonly
+ parameter(ncrdwr = 1)
+! in create phase, cleared by ncendef
+ parameter(nccreat = 2)
+! on create destroy existing file
+ parameter(ncexcl = 4)
+! in define mode, cleared by ncendef
+ parameter(ncindef = 8)
+! synchronise numrecs on change (x'10')
+ parameter(ncnsync = 16)
+! synchronise whole header on change (x'20')
+ parameter(nchsync = 32)
+! numrecs has changed (x'40')
+ parameter(ncndirty = 64)
+! header info has changed (x'80')
+ parameter(nchdirty = 128)
+! prefill vars on endef and increase of record, the default behavior
+ parameter(ncfill = 0)
+! do not fill vars on endef and increase of record (x'100')
+ parameter(ncnofill = 256)
+! isa link (x'8000')
+ parameter(nclink = 32768)
+
+!
+! 'mode' arguments for nccreate and ncopen
+!
+ parameter(ncnowrit = 0)
+ parameter(ncwrite = ncrdwr)
+ parameter(ncclob = nf_clobber)
+ parameter(ncnoclob = nf_noclobber)
+
+!
+! 'size' argument to ncdimdef for an unlimited dimension
+!
+ integer ncunlim
+ parameter(ncunlim = 0)
+
+!
+! attribute id to put/get a global attribute
+!
+ parameter(ncglobal = 0)
+
+!
+! advisory maximums:
+!
+ parameter(maxncop = 64)
+ parameter(maxncdim = 1024)
+ parameter(maxncatt = 8192)
+ parameter(maxncvar = 8192)
+! not enforced
+ parameter(maxncnam = 256)
+ parameter(maxvdims = maxncdim)
+
+!
+! global netcdf error status variable
+! initialized in error.c
+!
+
+! no error
+ parameter(ncnoerr = nf_noerr)
+! not a netcdf id
+ parameter(ncebadid = nf_ebadid)
+! too many netcdfs open
+ parameter(ncenfile = -31) ! nc_syserr
+! netcdf file exists && ncnoclob
+ parameter(nceexist = nf_eexist)
+! invalid argument
+ parameter(nceinval = nf_einval)
+! write to read only
+ parameter(nceperm = nf_eperm)
+! operation not allowed in data mode
+ parameter(ncenotin = nf_enotindefine )
+! operation not allowed in define mode
+ parameter(nceindef = nf_eindefine)
+! coordinates out of domain
+ parameter(ncecoord = nf_einvalcoords)
+! maxncdims exceeded
+ parameter(ncemaxds = nf_emaxdims)
+! string match to name in use
+ parameter(ncename = nf_enameinuse)
+! attribute not found
+ parameter(ncenoatt = nf_enotatt)
+! maxncattrs exceeded
+ parameter(ncemaxat = nf_emaxatts)
+! not a netcdf data type
+ parameter(ncebadty = nf_ebadtype)
+! invalid dimension id
+ parameter(ncebadd = nf_ebaddim)
+! ncunlimited in the wrong index
+ parameter(nceunlim = nf_eunlimpos)
+! maxncvars exceeded
+ parameter(ncemaxvs = nf_emaxvars)
+! variable not found
+ parameter(ncenotvr = nf_enotvar)
+! action prohibited on ncglobal varid
+ parameter(nceglob = nf_eglobal)
+! not a netcdf file
+ parameter(ncenotnc = nf_enotnc)
+ parameter(ncests = nf_ests)
+ parameter (ncentool = nf_emaxname)
+ parameter(ncfoobar = 32)
+ parameter(ncsyserr = -31)
+
+!
+! global options variable. used to determine behavior of error handler.
+! initialized in lerror.c
+!
+ parameter(ncfatal = 1)
+ parameter(ncverbos = 2)
+
+!
+! default fill values. these must be the same as in the c interface.
+!
+ integer filbyte
+ integer filchar
+ integer filshort
+ integer fillong
+ real filfloat
+ doubleprecision fildoub
+
+ parameter (filbyte = -127)
+ parameter (filchar = 0)
+ parameter (filshort = -32767)
+ parameter (fillong = -2147483647)
+ parameter (filfloat = 9.9692099683868690e+36)
+ parameter (fildoub = 9.9692099683868690e+36)
diff --git a/privatemodules/nc4/include/netcdf.mod b/privatemodules/nc4/include/netcdf.mod
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diff --git a/privatemodules/nc4/include/netcdf_fortv2_c_interfaces.mod b/privatemodules/nc4/include/netcdf_fortv2_c_interfaces.mod
new file mode 100644
index 0000000000000000000000000000000000000000..bbd0c7b544abe7967faeb8d9b547544d4d8014e8
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diff --git a/privatemodules/nc4/include/netcdf_mem.h b/privatemodules/nc4/include/netcdf_mem.h
new file mode 100644
index 0000000000000000000000000000000000000000..12f6bfaa8f04d481b9f56ade27e64c39310defd0
--- /dev/null
+++ b/privatemodules/nc4/include/netcdf_mem.h
@@ -0,0 +1,39 @@
+/*! \file netcdf_mem.h
+ *
+ * Main header file for in-memory (diskless) functionality.
+ *
+ * Copyright 2010 University Corporation for Atmospheric
+ * Research/Unidata. See COPYRIGHT file for more info.
+ *
+ * See \ref copyright file for more info.
+ *
+ */
+
+#ifndef NETCDF_MEM_H
+#define NETCDF_MEM_H 1
+
+#if defined(__cplusplus)
+extern "C" {
+#endif
+
+/* Declaration modifiers for DLL support (MSC et al) */
+#if defined(DLL_NETCDF) /* define when library is a DLL */
+# if defined(DLL_EXPORT) /* define when building the library */
+# define MSC_EXTRA __declspec(dllexport)
+# else
+# define MSC_EXTRA __declspec(dllimport)
+# endif
+#include <io.h>
+#else
+#define MSC_EXTRA
+#endif /* defined(DLL_NETCDF) */
+
+# define EXTERNL MSC_EXTRA extern
+
+EXTERNL int nc_open_mem(const char* path, int mode, size_t size, void* memory, int* ncidp);
+
+#if defined(__cplusplus)
+}
+#endif
+
+#endif /* NETCDF_MEM_H */
diff --git a/privatemodules/nc4/include/netcdf_meta.h b/privatemodules/nc4/include/netcdf_meta.h
new file mode 100644
index 0000000000000000000000000000000000000000..fe74e61c0e145121a37f2728220826ea14b5ef34
--- /dev/null
+++ b/privatemodules/nc4/include/netcdf_meta.h
@@ -0,0 +1,52 @@
+/*! \file netcdf_meta.h
+ *
+ * Meta information for libnetcdf which can be used by other packages which
+ * depend on libnetcdf.
+ *
+ * This file is automatically generated by the build system
+ * at configure time, and contains information related to
+ * how libnetcdf was built. It will not be required to
+ * include this file unless you want to probe the capabilities
+ * of libnetcdf. This should ideally only happen when configuring
+ * a project which depends on libnetcdf. At configure time,
+ * the dependant project can set its own macros which can be used
+ * in conditionals.
+ *
+ * Copyright 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+ * 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014
+ * University Corporation for Atmospheric Research/Unidata.
+ * See \ref copyright file for more info.
+ */
+
+#ifndef NETCDF_META_H
+#define NETCDF_META_H
+
+#define NC_VERSION_MAJOR 4 /*!< netcdf-c major version. */
+#define NC_VERSION_MINOR 4 /*!< netcdf-c minor version. */
+#define NC_VERSION_PATCH 1 /*!< netcdf-c patch version. */
+#define NC_VERSION_NOTE ".1" /*!< netcdf-c note. May be blank. */
+
+/*! netcdf-c version string.
+ *
+ * The format of the netcdf-c version string is as follows:
+ * \code
+ * NC_VERSION_MAJOR.NC_VERSION_MINOR.NC_VERSION_PATCH.NC_VERSION_NOTE
+ * \endcode
+ * Note that the trailing NC_VERSION_NOTE may be empty. It serves for
+ * identifiers such as '-rc1', etc.
+ */
+#define NC_VERSION "4.4.1.1"
+
+#define NC_HAS_NC2 1 /*!< API version 2 support. */
+#define NC_HAS_NC4 1 /*!< API version 4 support. */
+#define NC_HAS_HDF4 0 /*!< hdf4 support. */
+#define NC_HAS_HDF5 1 /*!< hdf5 support. */
+#define NC_HAS_SZIP 0 /*!< szip support (hdf5 only) */
+#define NC_HAS_DAP 1 /*!< DAP support. */
+#define NC_HAS_DISKLESS 1 /*!< diskless support. */
+#define NC_HAS_MMAP 0 /*!< mmap support. */
+#define NC_HAS_JNA 0 /*!< jna support. */
+#define NC_HAS_PNETCDF 0 /*!< pnetcdf support. */
+#define NC_HAS_PARALLEL 0 /*!< parallel IO support via hdf5 and/or pnetcdf. */
+
+#endif
diff --git a/privatemodules/nc4/include/netcdf_nc_data.mod b/privatemodules/nc4/include/netcdf_nc_data.mod
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index 0000000000000000000000000000000000000000..a9426d978680e3208115f3d0f95d5432c841d1e3
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diff --git a/privatemodules/nc4/include/typesizes.mod b/privatemodules/nc4/include/typesizes.mod
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index 0000000000000000000000000000000000000000..ec701c4f1756476b8df0ebc515401cbb1d93c91d
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diff --git a/privatemodules/nc4/include/zconf.h b/privatemodules/nc4/include/zconf.h
new file mode 100644
index 0000000000000000000000000000000000000000..996fff29215324c863c674d3aba0733ebcfb0cf3
--- /dev/null
+++ b/privatemodules/nc4/include/zconf.h
@@ -0,0 +1,511 @@
+/* zconf.h -- configuration of the zlib compression library
+ * Copyright (C) 1995-2013 Jean-loup Gailly.
+ * For conditions of distribution and use, see copyright notice in zlib.h
+ */
+
+/* @(#) $Id$ */
+
+#ifndef ZCONF_H
+#define ZCONF_H
+
+/*
+ * If you *really* need a unique prefix for all types and library functions,
+ * compile with -DZ_PREFIX. The "standard" zlib should be compiled without it.
+ * Even better than compiling with -DZ_PREFIX would be to use configure to set
+ * this permanently in zconf.h using "./configure --zprefix".
+ */
+#ifdef Z_PREFIX /* may be set to #if 1 by ./configure */
+# define Z_PREFIX_SET
+
+/* all linked symbols */
+# define _dist_code z__dist_code
+# define _length_code z__length_code
+# define _tr_align z__tr_align
+# define _tr_flush_bits z__tr_flush_bits
+# define _tr_flush_block z__tr_flush_block
+# define _tr_init z__tr_init
+# define _tr_stored_block z__tr_stored_block
+# define _tr_tally z__tr_tally
+# define adler32 z_adler32
+# define adler32_combine z_adler32_combine
+# define adler32_combine64 z_adler32_combine64
+# ifndef Z_SOLO
+# define compress z_compress
+# define compress2 z_compress2
+# define compressBound z_compressBound
+# endif
+# define crc32 z_crc32
+# define crc32_combine z_crc32_combine
+# define crc32_combine64 z_crc32_combine64
+# define deflate z_deflate
+# define deflateBound z_deflateBound
+# define deflateCopy z_deflateCopy
+# define deflateEnd z_deflateEnd
+# define deflateInit2_ z_deflateInit2_
+# define deflateInit_ z_deflateInit_
+# define deflateParams z_deflateParams
+# define deflatePending z_deflatePending
+# define deflatePrime z_deflatePrime
+# define deflateReset z_deflateReset
+# define deflateResetKeep z_deflateResetKeep
+# define deflateSetDictionary z_deflateSetDictionary
+# define deflateSetHeader z_deflateSetHeader
+# define deflateTune z_deflateTune
+# define deflate_copyright z_deflate_copyright
+# define get_crc_table z_get_crc_table
+# ifndef Z_SOLO
+# define gz_error z_gz_error
+# define gz_intmax z_gz_intmax
+# define gz_strwinerror z_gz_strwinerror
+# define gzbuffer z_gzbuffer
+# define gzclearerr z_gzclearerr
+# define gzclose z_gzclose
+# define gzclose_r z_gzclose_r
+# define gzclose_w z_gzclose_w
+# define gzdirect z_gzdirect
+# define gzdopen z_gzdopen
+# define gzeof z_gzeof
+# define gzerror z_gzerror
+# define gzflush z_gzflush
+# define gzgetc z_gzgetc
+# define gzgetc_ z_gzgetc_
+# define gzgets z_gzgets
+# define gzoffset z_gzoffset
+# define gzoffset64 z_gzoffset64
+# define gzopen z_gzopen
+# define gzopen64 z_gzopen64
+# ifdef _WIN32
+# define gzopen_w z_gzopen_w
+# endif
+# define gzprintf z_gzprintf
+# define gzvprintf z_gzvprintf
+# define gzputc z_gzputc
+# define gzputs z_gzputs
+# define gzread z_gzread
+# define gzrewind z_gzrewind
+# define gzseek z_gzseek
+# define gzseek64 z_gzseek64
+# define gzsetparams z_gzsetparams
+# define gztell z_gztell
+# define gztell64 z_gztell64
+# define gzungetc z_gzungetc
+# define gzwrite z_gzwrite
+# endif
+# define inflate z_inflate
+# define inflateBack z_inflateBack
+# define inflateBackEnd z_inflateBackEnd
+# define inflateBackInit_ z_inflateBackInit_
+# define inflateCopy z_inflateCopy
+# define inflateEnd z_inflateEnd
+# define inflateGetHeader z_inflateGetHeader
+# define inflateInit2_ z_inflateInit2_
+# define inflateInit_ z_inflateInit_
+# define inflateMark z_inflateMark
+# define inflatePrime z_inflatePrime
+# define inflateReset z_inflateReset
+# define inflateReset2 z_inflateReset2
+# define inflateSetDictionary z_inflateSetDictionary
+# define inflateGetDictionary z_inflateGetDictionary
+# define inflateSync z_inflateSync
+# define inflateSyncPoint z_inflateSyncPoint
+# define inflateUndermine z_inflateUndermine
+# define inflateResetKeep z_inflateResetKeep
+# define inflate_copyright z_inflate_copyright
+# define inflate_fast z_inflate_fast
+# define inflate_table z_inflate_table
+# ifndef Z_SOLO
+# define uncompress z_uncompress
+# endif
+# define zError z_zError
+# ifndef Z_SOLO
+# define zcalloc z_zcalloc
+# define zcfree z_zcfree
+# endif
+# define zlibCompileFlags z_zlibCompileFlags
+# define zlibVersion z_zlibVersion
+
+/* all zlib typedefs in zlib.h and zconf.h */
+# define Byte z_Byte
+# define Bytef z_Bytef
+# define alloc_func z_alloc_func
+# define charf z_charf
+# define free_func z_free_func
+# ifndef Z_SOLO
+# define gzFile z_gzFile
+# endif
+# define gz_header z_gz_header
+# define gz_headerp z_gz_headerp
+# define in_func z_in_func
+# define intf z_intf
+# define out_func z_out_func
+# define uInt z_uInt
+# define uIntf z_uIntf
+# define uLong z_uLong
+# define uLongf z_uLongf
+# define voidp z_voidp
+# define voidpc z_voidpc
+# define voidpf z_voidpf
+
+/* all zlib structs in zlib.h and zconf.h */
+# define gz_header_s z_gz_header_s
+# define internal_state z_internal_state
+
+#endif
+
+#if defined(__MSDOS__) && !defined(MSDOS)
+# define MSDOS
+#endif
+#if (defined(OS_2) || defined(__OS2__)) && !defined(OS2)
+# define OS2
+#endif
+#if defined(_WINDOWS) && !defined(WINDOWS)
+# define WINDOWS
+#endif
+#if defined(_WIN32) || defined(_WIN32_WCE) || defined(__WIN32__)
+# ifndef WIN32
+# define WIN32
+# endif
+#endif
+#if (defined(MSDOS) || defined(OS2) || defined(WINDOWS)) && !defined(WIN32)
+# if !defined(__GNUC__) && !defined(__FLAT__) && !defined(__386__)
+# ifndef SYS16BIT
+# define SYS16BIT
+# endif
+# endif
+#endif
+
+/*
+ * Compile with -DMAXSEG_64K if the alloc function cannot allocate more
+ * than 64k bytes at a time (needed on systems with 16-bit int).
+ */
+#ifdef SYS16BIT
+# define MAXSEG_64K
+#endif
+#ifdef MSDOS
+# define UNALIGNED_OK
+#endif
+
+#ifdef __STDC_VERSION__
+# ifndef STDC
+# define STDC
+# endif
+# if __STDC_VERSION__ >= 199901L
+# ifndef STDC99
+# define STDC99
+# endif
+# endif
+#endif
+#if !defined(STDC) && (defined(__STDC__) || defined(__cplusplus))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(__GNUC__) || defined(__BORLANDC__))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(MSDOS) || defined(WINDOWS) || defined(WIN32))
+# define STDC
+#endif
+#if !defined(STDC) && (defined(OS2) || defined(__HOS_AIX__))
+# define STDC
+#endif
+
+#if defined(__OS400__) && !defined(STDC) /* iSeries (formerly AS/400). */
+# define STDC
+#endif
+
+#ifndef STDC
+# ifndef const /* cannot use !defined(STDC) && !defined(const) on Mac */
+# define const /* note: need a more gentle solution here */
+# endif
+#endif
+
+#if defined(ZLIB_CONST) && !defined(z_const)
+# define z_const const
+#else
+# define z_const
+#endif
+
+/* Some Mac compilers merge all .h files incorrectly: */
+#if defined(__MWERKS__)||defined(applec)||defined(THINK_C)||defined(__SC__)
+# define NO_DUMMY_DECL
+#endif
+
+/* Maximum value for memLevel in deflateInit2 */
+#ifndef MAX_MEM_LEVEL
+# ifdef MAXSEG_64K
+# define MAX_MEM_LEVEL 8
+# else
+# define MAX_MEM_LEVEL 9
+# endif
+#endif
+
+/* Maximum value for windowBits in deflateInit2 and inflateInit2.
+ * WARNING: reducing MAX_WBITS makes minigzip unable to extract .gz files
+ * created by gzip. (Files created by minigzip can still be extracted by
+ * gzip.)
+ */
+#ifndef MAX_WBITS
+# define MAX_WBITS 15 /* 32K LZ77 window */
+#endif
+
+/* The memory requirements for deflate are (in bytes):
+ (1 << (windowBits+2)) + (1 << (memLevel+9))
+ that is: 128K for windowBits=15 + 128K for memLevel = 8 (default values)
+ plus a few kilobytes for small objects. For example, if you want to reduce
+ the default memory requirements from 256K to 128K, compile with
+ make CFLAGS="-O -DMAX_WBITS=14 -DMAX_MEM_LEVEL=7"
+ Of course this will generally degrade compression (there's no free lunch).
+
+ The memory requirements for inflate are (in bytes) 1 << windowBits
+ that is, 32K for windowBits=15 (default value) plus a few kilobytes
+ for small objects.
+*/
+
+ /* Type declarations */
+
+#ifndef OF /* function prototypes */
+# ifdef STDC
+# define OF(args) args
+# else
+# define OF(args) ()
+# endif
+#endif
+
+#ifndef Z_ARG /* function prototypes for stdarg */
+# if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# define Z_ARG(args) args
+# else
+# define Z_ARG(args) ()
+# endif
+#endif
+
+/* The following definitions for FAR are needed only for MSDOS mixed
+ * model programming (small or medium model with some far allocations).
+ * This was tested only with MSC; for other MSDOS compilers you may have
+ * to define NO_MEMCPY in zutil.h. If you don't need the mixed model,
+ * just define FAR to be empty.
+ */
+#ifdef SYS16BIT
+# if defined(M_I86SM) || defined(M_I86MM)
+ /* MSC small or medium model */
+# define SMALL_MEDIUM
+# ifdef _MSC_VER
+# define FAR _far
+# else
+# define FAR far
+# endif
+# endif
+# if (defined(__SMALL__) || defined(__MEDIUM__))
+ /* Turbo C small or medium model */
+# define SMALL_MEDIUM
+# ifdef __BORLANDC__
+# define FAR _far
+# else
+# define FAR far
+# endif
+# endif
+#endif
+
+#if defined(WINDOWS) || defined(WIN32)
+ /* If building or using zlib as a DLL, define ZLIB_DLL.
+ * This is not mandatory, but it offers a little performance increase.
+ */
+# ifdef ZLIB_DLL
+# if defined(WIN32) && (!defined(__BORLANDC__) || (__BORLANDC__ >= 0x500))
+# ifdef ZLIB_INTERNAL
+# define ZEXTERN extern __declspec(dllexport)
+# else
+# define ZEXTERN extern __declspec(dllimport)
+# endif
+# endif
+# endif /* ZLIB_DLL */
+ /* If building or using zlib with the WINAPI/WINAPIV calling convention,
+ * define ZLIB_WINAPI.
+ * Caution: the standard ZLIB1.DLL is NOT compiled using ZLIB_WINAPI.
+ */
+# ifdef ZLIB_WINAPI
+# ifdef FAR
+# undef FAR
+# endif
+# include <windows.h>
+ /* No need for _export, use ZLIB.DEF instead. */
+ /* For complete Windows compatibility, use WINAPI, not __stdcall. */
+# define ZEXPORT WINAPI
+# ifdef WIN32
+# define ZEXPORTVA WINAPIV
+# else
+# define ZEXPORTVA FAR CDECL
+# endif
+# endif
+#endif
+
+#if defined (__BEOS__)
+# ifdef ZLIB_DLL
+# ifdef ZLIB_INTERNAL
+# define ZEXPORT __declspec(dllexport)
+# define ZEXPORTVA __declspec(dllexport)
+# else
+# define ZEXPORT __declspec(dllimport)
+# define ZEXPORTVA __declspec(dllimport)
+# endif
+# endif
+#endif
+
+#ifndef ZEXTERN
+# define ZEXTERN extern
+#endif
+#ifndef ZEXPORT
+# define ZEXPORT
+#endif
+#ifndef ZEXPORTVA
+# define ZEXPORTVA
+#endif
+
+#ifndef FAR
+# define FAR
+#endif
+
+#if !defined(__MACTYPES__)
+typedef unsigned char Byte; /* 8 bits */
+#endif
+typedef unsigned int uInt; /* 16 bits or more */
+typedef unsigned long uLong; /* 32 bits or more */
+
+#ifdef SMALL_MEDIUM
+ /* Borland C/C++ and some old MSC versions ignore FAR inside typedef */
+# define Bytef Byte FAR
+#else
+ typedef Byte FAR Bytef;
+#endif
+typedef char FAR charf;
+typedef int FAR intf;
+typedef uInt FAR uIntf;
+typedef uLong FAR uLongf;
+
+#ifdef STDC
+ typedef void const *voidpc;
+ typedef void FAR *voidpf;
+ typedef void *voidp;
+#else
+ typedef Byte const *voidpc;
+ typedef Byte FAR *voidpf;
+ typedef Byte *voidp;
+#endif
+
+#if !defined(Z_U4) && !defined(Z_SOLO) && defined(STDC)
+# include <limits.h>
+# if (UINT_MAX == 0xffffffffUL)
+# define Z_U4 unsigned
+# elif (ULONG_MAX == 0xffffffffUL)
+# define Z_U4 unsigned long
+# elif (USHRT_MAX == 0xffffffffUL)
+# define Z_U4 unsigned short
+# endif
+#endif
+
+#ifdef Z_U4
+ typedef Z_U4 z_crc_t;
+#else
+ typedef unsigned long z_crc_t;
+#endif
+
+#if 1 /* was set to #if 1 by ./configure */
+# define Z_HAVE_UNISTD_H
+#endif
+
+#if 1 /* was set to #if 1 by ./configure */
+# define Z_HAVE_STDARG_H
+#endif
+
+#ifdef STDC
+# ifndef Z_SOLO
+# include <sys/types.h> /* for off_t */
+# endif
+#endif
+
+#if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# ifndef Z_SOLO
+# include <stdarg.h> /* for va_list */
+# endif
+#endif
+
+#ifdef _WIN32
+# ifndef Z_SOLO
+# include <stddef.h> /* for wchar_t */
+# endif
+#endif
+
+/* a little trick to accommodate both "#define _LARGEFILE64_SOURCE" and
+ * "#define _LARGEFILE64_SOURCE 1" as requesting 64-bit operations, (even
+ * though the former does not conform to the LFS document), but considering
+ * both "#undef _LARGEFILE64_SOURCE" and "#define _LARGEFILE64_SOURCE 0" as
+ * equivalently requesting no 64-bit operations
+ */
+#if defined(_LARGEFILE64_SOURCE) && -_LARGEFILE64_SOURCE - -1 == 1
+# undef _LARGEFILE64_SOURCE
+#endif
+
+#if defined(__WATCOMC__) && !defined(Z_HAVE_UNISTD_H)
+# define Z_HAVE_UNISTD_H
+#endif
+#ifndef Z_SOLO
+# if defined(Z_HAVE_UNISTD_H) || defined(_LARGEFILE64_SOURCE)
+# include <unistd.h> /* for SEEK_*, off_t, and _LFS64_LARGEFILE */
+# ifdef VMS
+# include <unixio.h> /* for off_t */
+# endif
+# ifndef z_off_t
+# define z_off_t off_t
+# endif
+# endif
+#endif
+
+#if defined(_LFS64_LARGEFILE) && _LFS64_LARGEFILE-0
+# define Z_LFS64
+#endif
+
+#if defined(_LARGEFILE64_SOURCE) && defined(Z_LFS64)
+# define Z_LARGE64
+#endif
+
+#if defined(_FILE_OFFSET_BITS) && _FILE_OFFSET_BITS-0 == 64 && defined(Z_LFS64)
+# define Z_WANT64
+#endif
+
+#if !defined(SEEK_SET) && !defined(Z_SOLO)
+# define SEEK_SET 0 /* Seek from beginning of file. */
+# define SEEK_CUR 1 /* Seek from current position. */
+# define SEEK_END 2 /* Set file pointer to EOF plus "offset" */
+#endif
+
+#ifndef z_off_t
+# define z_off_t long
+#endif
+
+#if !defined(_WIN32) && defined(Z_LARGE64)
+# define z_off64_t off64_t
+#else
+# if defined(_WIN32) && !defined(__GNUC__) && !defined(Z_SOLO)
+# define z_off64_t __int64
+# else
+# define z_off64_t z_off_t
+# endif
+#endif
+
+/* MVS linker does not support external names larger than 8 bytes */
+#if defined(__MVS__)
+ #pragma map(deflateInit_,"DEIN")
+ #pragma map(deflateInit2_,"DEIN2")
+ #pragma map(deflateEnd,"DEEND")
+ #pragma map(deflateBound,"DEBND")
+ #pragma map(inflateInit_,"ININ")
+ #pragma map(inflateInit2_,"ININ2")
+ #pragma map(inflateEnd,"INEND")
+ #pragma map(inflateSync,"INSY")
+ #pragma map(inflateSetDictionary,"INSEDI")
+ #pragma map(compressBound,"CMBND")
+ #pragma map(inflate_table,"INTABL")
+ #pragma map(inflate_fast,"INFA")
+ #pragma map(inflate_copyright,"INCOPY")
+#endif
+
+#endif /* ZCONF_H */
diff --git a/privatemodules/nc4/include/zlib.h b/privatemodules/nc4/include/zlib.h
new file mode 100644
index 0000000000000000000000000000000000000000..3e0c7672ac51d93782f020bba32eb1207617e70a
--- /dev/null
+++ b/privatemodules/nc4/include/zlib.h
@@ -0,0 +1,1768 @@
+/* zlib.h -- interface of the 'zlib' general purpose compression library
+ version 1.2.8, April 28th, 2013
+
+ Copyright (C) 1995-2013 Jean-loup Gailly and Mark Adler
+
+ This software is provided 'as-is', without any express or implied
+ warranty. In no event will the authors be held liable for any damages
+ arising from the use of this software.
+
+ Permission is granted to anyone to use this software for any purpose,
+ including commercial applications, and to alter it and redistribute it
+ freely, subject to the following restrictions:
+
+ 1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+ 2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+ 3. This notice may not be removed or altered from any source distribution.
+
+ Jean-loup Gailly Mark Adler
+ jloup@gzip.org madler@alumni.caltech.edu
+
+
+ The data format used by the zlib library is described by RFCs (Request for
+ Comments) 1950 to 1952 in the files http://tools.ietf.org/html/rfc1950
+ (zlib format), rfc1951 (deflate format) and rfc1952 (gzip format).
+*/
+
+#ifndef ZLIB_H
+#define ZLIB_H
+
+#include "zconf.h"
+
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+#define ZLIB_VERSION "1.2.8"
+#define ZLIB_VERNUM 0x1280
+#define ZLIB_VER_MAJOR 1
+#define ZLIB_VER_MINOR 2
+#define ZLIB_VER_REVISION 8
+#define ZLIB_VER_SUBREVISION 0
+
+/*
+ The 'zlib' compression library provides in-memory compression and
+ decompression functions, including integrity checks of the uncompressed data.
+ This version of the library supports only one compression method (deflation)
+ but other algorithms will be added later and will have the same stream
+ interface.
+
+ Compression can be done in a single step if the buffers are large enough,
+ or can be done by repeated calls of the compression function. In the latter
+ case, the application must provide more input and/or consume the output
+ (providing more output space) before each call.
+
+ The compressed data format used by default by the in-memory functions is
+ the zlib format, which is a zlib wrapper documented in RFC 1950, wrapped
+ around a deflate stream, which is itself documented in RFC 1951.
+
+ The library also supports reading and writing files in gzip (.gz) format
+ with an interface similar to that of stdio using the functions that start
+ with "gz". The gzip format is different from the zlib format. gzip is a
+ gzip wrapper, documented in RFC 1952, wrapped around a deflate stream.
+
+ This library can optionally read and write gzip streams in memory as well.
+
+ The zlib format was designed to be compact and fast for use in memory
+ and on communications channels. The gzip format was designed for single-
+ file compression on file systems, has a larger header than zlib to maintain
+ directory information, and uses a different, slower check method than zlib.
+
+ The library does not install any signal handler. The decoder checks
+ the consistency of the compressed data, so the library should never crash
+ even in case of corrupted input.
+*/
+
+typedef voidpf (*alloc_func) OF((voidpf opaque, uInt items, uInt size));
+typedef void (*free_func) OF((voidpf opaque, voidpf address));
+
+struct internal_state;
+
+typedef struct z_stream_s {
+ z_const Bytef *next_in; /* next input byte */
+ uInt avail_in; /* number of bytes available at next_in */
+ uLong total_in; /* total number of input bytes read so far */
+
+ Bytef *next_out; /* next output byte should be put there */
+ uInt avail_out; /* remaining free space at next_out */
+ uLong total_out; /* total number of bytes output so far */
+
+ z_const char *msg; /* last error message, NULL if no error */
+ struct internal_state FAR *state; /* not visible by applications */
+
+ alloc_func zalloc; /* used to allocate the internal state */
+ free_func zfree; /* used to free the internal state */
+ voidpf opaque; /* private data object passed to zalloc and zfree */
+
+ int data_type; /* best guess about the data type: binary or text */
+ uLong adler; /* adler32 value of the uncompressed data */
+ uLong reserved; /* reserved for future use */
+} z_stream;
+
+typedef z_stream FAR *z_streamp;
+
+/*
+ gzip header information passed to and from zlib routines. See RFC 1952
+ for more details on the meanings of these fields.
+*/
+typedef struct gz_header_s {
+ int text; /* true if compressed data believed to be text */
+ uLong time; /* modification time */
+ int xflags; /* extra flags (not used when writing a gzip file) */
+ int os; /* operating system */
+ Bytef *extra; /* pointer to extra field or Z_NULL if none */
+ uInt extra_len; /* extra field length (valid if extra != Z_NULL) */
+ uInt extra_max; /* space at extra (only when reading header) */
+ Bytef *name; /* pointer to zero-terminated file name or Z_NULL */
+ uInt name_max; /* space at name (only when reading header) */
+ Bytef *comment; /* pointer to zero-terminated comment or Z_NULL */
+ uInt comm_max; /* space at comment (only when reading header) */
+ int hcrc; /* true if there was or will be a header crc */
+ int done; /* true when done reading gzip header (not used
+ when writing a gzip file) */
+} gz_header;
+
+typedef gz_header FAR *gz_headerp;
+
+/*
+ The application must update next_in and avail_in when avail_in has dropped
+ to zero. It must update next_out and avail_out when avail_out has dropped
+ to zero. The application must initialize zalloc, zfree and opaque before
+ calling the init function. All other fields are set by the compression
+ library and must not be updated by the application.
+
+ The opaque value provided by the application will be passed as the first
+ parameter for calls of zalloc and zfree. This can be useful for custom
+ memory management. The compression library attaches no meaning to the
+ opaque value.
+
+ zalloc must return Z_NULL if there is not enough memory for the object.
+ If zlib is used in a multi-threaded application, zalloc and zfree must be
+ thread safe.
+
+ On 16-bit systems, the functions zalloc and zfree must be able to allocate
+ exactly 65536 bytes, but will not be required to allocate more than this if
+ the symbol MAXSEG_64K is defined (see zconf.h). WARNING: On MSDOS, pointers
+ returned by zalloc for objects of exactly 65536 bytes *must* have their
+ offset normalized to zero. The default allocation function provided by this
+ library ensures this (see zutil.c). To reduce memory requirements and avoid
+ any allocation of 64K objects, at the expense of compression ratio, compile
+ the library with -DMAX_WBITS=14 (see zconf.h).
+
+ The fields total_in and total_out can be used for statistics or progress
+ reports. After compression, total_in holds the total size of the
+ uncompressed data and may be saved for use in the decompressor (particularly
+ if the decompressor wants to decompress everything in a single step).
+*/
+
+ /* constants */
+
+#define Z_NO_FLUSH 0
+#define Z_PARTIAL_FLUSH 1
+#define Z_SYNC_FLUSH 2
+#define Z_FULL_FLUSH 3
+#define Z_FINISH 4
+#define Z_BLOCK 5
+#define Z_TREES 6
+/* Allowed flush values; see deflate() and inflate() below for details */
+
+#define Z_OK 0
+#define Z_STREAM_END 1
+#define Z_NEED_DICT 2
+#define Z_ERRNO (-1)
+#define Z_STREAM_ERROR (-2)
+#define Z_DATA_ERROR (-3)
+#define Z_MEM_ERROR (-4)
+#define Z_BUF_ERROR (-5)
+#define Z_VERSION_ERROR (-6)
+/* Return codes for the compression/decompression functions. Negative values
+ * are errors, positive values are used for special but normal events.
+ */
+
+#define Z_NO_COMPRESSION 0
+#define Z_BEST_SPEED 1
+#define Z_BEST_COMPRESSION 9
+#define Z_DEFAULT_COMPRESSION (-1)
+/* compression levels */
+
+#define Z_FILTERED 1
+#define Z_HUFFMAN_ONLY 2
+#define Z_RLE 3
+#define Z_FIXED 4
+#define Z_DEFAULT_STRATEGY 0
+/* compression strategy; see deflateInit2() below for details */
+
+#define Z_BINARY 0
+#define Z_TEXT 1
+#define Z_ASCII Z_TEXT /* for compatibility with 1.2.2 and earlier */
+#define Z_UNKNOWN 2
+/* Possible values of the data_type field (though see inflate()) */
+
+#define Z_DEFLATED 8
+/* The deflate compression method (the only one supported in this version) */
+
+#define Z_NULL 0 /* for initializing zalloc, zfree, opaque */
+
+#define zlib_version zlibVersion()
+/* for compatibility with versions < 1.0.2 */
+
+
+ /* basic functions */
+
+ZEXTERN const char * ZEXPORT zlibVersion OF((void));
+/* The application can compare zlibVersion and ZLIB_VERSION for consistency.
+ If the first character differs, the library code actually used is not
+ compatible with the zlib.h header file used by the application. This check
+ is automatically made by deflateInit and inflateInit.
+ */
+
+/*
+ZEXTERN int ZEXPORT deflateInit OF((z_streamp strm, int level));
+
+ Initializes the internal stream state for compression. The fields
+ zalloc, zfree and opaque must be initialized before by the caller. If
+ zalloc and zfree are set to Z_NULL, deflateInit updates them to use default
+ allocation functions.
+
+ The compression level must be Z_DEFAULT_COMPRESSION, or between 0 and 9:
+ 1 gives best speed, 9 gives best compression, 0 gives no compression at all
+ (the input data is simply copied a block at a time). Z_DEFAULT_COMPRESSION
+ requests a default compromise between speed and compression (currently
+ equivalent to level 6).
+
+ deflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_STREAM_ERROR if level is not a valid compression level, or
+ Z_VERSION_ERROR if the zlib library version (zlib_version) is incompatible
+ with the version assumed by the caller (ZLIB_VERSION). msg is set to null
+ if there is no error message. deflateInit does not perform any compression:
+ this will be done by deflate().
+*/
+
+
+ZEXTERN int ZEXPORT deflate OF((z_streamp strm, int flush));
+/*
+ deflate compresses as much data as possible, and stops when the input
+ buffer becomes empty or the output buffer becomes full. It may introduce
+ some output latency (reading input without producing any output) except when
+ forced to flush.
+
+ The detailed semantics are as follows. deflate performs one or both of the
+ following actions:
+
+ - Compress more input starting at next_in and update next_in and avail_in
+ accordingly. If not all input can be processed (because there is not
+ enough room in the output buffer), next_in and avail_in are updated and
+ processing will resume at this point for the next call of deflate().
+
+ - Provide more output starting at next_out and update next_out and avail_out
+ accordingly. This action is forced if the parameter flush is non zero.
+ Forcing flush frequently degrades the compression ratio, so this parameter
+ should be set only when necessary (in interactive applications). Some
+ output may be provided even if flush is not set.
+
+ Before the call of deflate(), the application should ensure that at least
+ one of the actions is possible, by providing more input and/or consuming more
+ output, and updating avail_in or avail_out accordingly; avail_out should
+ never be zero before the call. The application can consume the compressed
+ output when it wants, for example when the output buffer is full (avail_out
+ == 0), or after each call of deflate(). If deflate returns Z_OK and with
+ zero avail_out, it must be called again after making room in the output
+ buffer because there might be more output pending.
+
+ Normally the parameter flush is set to Z_NO_FLUSH, which allows deflate to
+ decide how much data to accumulate before producing output, in order to
+ maximize compression.
+
+ If the parameter flush is set to Z_SYNC_FLUSH, all pending output is
+ flushed to the output buffer and the output is aligned on a byte boundary, so
+ that the decompressor can get all input data available so far. (In
+ particular avail_in is zero after the call if enough output space has been
+ provided before the call.) Flushing may degrade compression for some
+ compression algorithms and so it should be used only when necessary. This
+ completes the current deflate block and follows it with an empty stored block
+ that is three bits plus filler bits to the next byte, followed by four bytes
+ (00 00 ff ff).
+
+ If flush is set to Z_PARTIAL_FLUSH, all pending output is flushed to the
+ output buffer, but the output is not aligned to a byte boundary. All of the
+ input data so far will be available to the decompressor, as for Z_SYNC_FLUSH.
+ This completes the current deflate block and follows it with an empty fixed
+ codes block that is 10 bits long. This assures that enough bytes are output
+ in order for the decompressor to finish the block before the empty fixed code
+ block.
+
+ If flush is set to Z_BLOCK, a deflate block is completed and emitted, as
+ for Z_SYNC_FLUSH, but the output is not aligned on a byte boundary, and up to
+ seven bits of the current block are held to be written as the next byte after
+ the next deflate block is completed. In this case, the decompressor may not
+ be provided enough bits at this point in order to complete decompression of
+ the data provided so far to the compressor. It may need to wait for the next
+ block to be emitted. This is for advanced applications that need to control
+ the emission of deflate blocks.
+
+ If flush is set to Z_FULL_FLUSH, all output is flushed as with
+ Z_SYNC_FLUSH, and the compression state is reset so that decompression can
+ restart from this point if previous compressed data has been damaged or if
+ random access is desired. Using Z_FULL_FLUSH too often can seriously degrade
+ compression.
+
+ If deflate returns with avail_out == 0, this function must be called again
+ with the same value of the flush parameter and more output space (updated
+ avail_out), until the flush is complete (deflate returns with non-zero
+ avail_out). In the case of a Z_FULL_FLUSH or Z_SYNC_FLUSH, make sure that
+ avail_out is greater than six to avoid repeated flush markers due to
+ avail_out == 0 on return.
+
+ If the parameter flush is set to Z_FINISH, pending input is processed,
+ pending output is flushed and deflate returns with Z_STREAM_END if there was
+ enough output space; if deflate returns with Z_OK, this function must be
+ called again with Z_FINISH and more output space (updated avail_out) but no
+ more input data, until it returns with Z_STREAM_END or an error. After
+ deflate has returned Z_STREAM_END, the only possible operations on the stream
+ are deflateReset or deflateEnd.
+
+ Z_FINISH can be used immediately after deflateInit if all the compression
+ is to be done in a single step. In this case, avail_out must be at least the
+ value returned by deflateBound (see below). Then deflate is guaranteed to
+ return Z_STREAM_END. If not enough output space is provided, deflate will
+ not return Z_STREAM_END, and it must be called again as described above.
+
+ deflate() sets strm->adler to the adler32 checksum of all input read
+ so far (that is, total_in bytes).
+
+ deflate() may update strm->data_type if it can make a good guess about
+ the input data type (Z_BINARY or Z_TEXT). In doubt, the data is considered
+ binary. This field is only for information purposes and does not affect the
+ compression algorithm in any manner.
+
+ deflate() returns Z_OK if some progress has been made (more input
+ processed or more output produced), Z_STREAM_END if all input has been
+ consumed and all output has been produced (only when flush is set to
+ Z_FINISH), Z_STREAM_ERROR if the stream state was inconsistent (for example
+ if next_in or next_out was Z_NULL), Z_BUF_ERROR if no progress is possible
+ (for example avail_in or avail_out was zero). Note that Z_BUF_ERROR is not
+ fatal, and deflate() can be called again with more input and more output
+ space to continue compressing.
+*/
+
+
+ZEXTERN int ZEXPORT deflateEnd OF((z_streamp strm));
+/*
+ All dynamically allocated data structures for this stream are freed.
+ This function discards any unprocessed input and does not flush any pending
+ output.
+
+ deflateEnd returns Z_OK if success, Z_STREAM_ERROR if the
+ stream state was inconsistent, Z_DATA_ERROR if the stream was freed
+ prematurely (some input or output was discarded). In the error case, msg
+ may be set but then points to a static string (which must not be
+ deallocated).
+*/
+
+
+/*
+ZEXTERN int ZEXPORT inflateInit OF((z_streamp strm));
+
+ Initializes the internal stream state for decompression. The fields
+ next_in, avail_in, zalloc, zfree and opaque must be initialized before by
+ the caller. If next_in is not Z_NULL and avail_in is large enough (the
+ exact value depends on the compression method), inflateInit determines the
+ compression method from the zlib header and allocates all data structures
+ accordingly; otherwise the allocation will be deferred to the first call of
+ inflate. If zalloc and zfree are set to Z_NULL, inflateInit updates them to
+ use default allocation functions.
+
+ inflateInit returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_VERSION_ERROR if the zlib library version is incompatible with the
+ version assumed by the caller, or Z_STREAM_ERROR if the parameters are
+ invalid, such as a null pointer to the structure. msg is set to null if
+ there is no error message. inflateInit does not perform any decompression
+ apart from possibly reading the zlib header if present: actual decompression
+ will be done by inflate(). (So next_in and avail_in may be modified, but
+ next_out and avail_out are unused and unchanged.) The current implementation
+ of inflateInit() does not process any header information -- that is deferred
+ until inflate() is called.
+*/
+
+
+ZEXTERN int ZEXPORT inflate OF((z_streamp strm, int flush));
+/*
+ inflate decompresses as much data as possible, and stops when the input
+ buffer becomes empty or the output buffer becomes full. It may introduce
+ some output latency (reading input without producing any output) except when
+ forced to flush.
+
+ The detailed semantics are as follows. inflate performs one or both of the
+ following actions:
+
+ - Decompress more input starting at next_in and update next_in and avail_in
+ accordingly. If not all input can be processed (because there is not
+ enough room in the output buffer), next_in is updated and processing will
+ resume at this point for the next call of inflate().
+
+ - Provide more output starting at next_out and update next_out and avail_out
+ accordingly. inflate() provides as much output as possible, until there is
+ no more input data or no more space in the output buffer (see below about
+ the flush parameter).
+
+ Before the call of inflate(), the application should ensure that at least
+ one of the actions is possible, by providing more input and/or consuming more
+ output, and updating the next_* and avail_* values accordingly. The
+ application can consume the uncompressed output when it wants, for example
+ when the output buffer is full (avail_out == 0), or after each call of
+ inflate(). If inflate returns Z_OK and with zero avail_out, it must be
+ called again after making room in the output buffer because there might be
+ more output pending.
+
+ The flush parameter of inflate() can be Z_NO_FLUSH, Z_SYNC_FLUSH, Z_FINISH,
+ Z_BLOCK, or Z_TREES. Z_SYNC_FLUSH requests that inflate() flush as much
+ output as possible to the output buffer. Z_BLOCK requests that inflate()
+ stop if and when it gets to the next deflate block boundary. When decoding
+ the zlib or gzip format, this will cause inflate() to return immediately
+ after the header and before the first block. When doing a raw inflate,
+ inflate() will go ahead and process the first block, and will return when it
+ gets to the end of that block, or when it runs out of data.
+
+ The Z_BLOCK option assists in appending to or combining deflate streams.
+ Also to assist in this, on return inflate() will set strm->data_type to the
+ number of unused bits in the last byte taken from strm->next_in, plus 64 if
+ inflate() is currently decoding the last block in the deflate stream, plus
+ 128 if inflate() returned immediately after decoding an end-of-block code or
+ decoding the complete header up to just before the first byte of the deflate
+ stream. The end-of-block will not be indicated until all of the uncompressed
+ data from that block has been written to strm->next_out. The number of
+ unused bits may in general be greater than seven, except when bit 7 of
+ data_type is set, in which case the number of unused bits will be less than
+ eight. data_type is set as noted here every time inflate() returns for all
+ flush options, and so can be used to determine the amount of currently
+ consumed input in bits.
+
+ The Z_TREES option behaves as Z_BLOCK does, but it also returns when the
+ end of each deflate block header is reached, before any actual data in that
+ block is decoded. This allows the caller to determine the length of the
+ deflate block header for later use in random access within a deflate block.
+ 256 is added to the value of strm->data_type when inflate() returns
+ immediately after reaching the end of the deflate block header.
+
+ inflate() should normally be called until it returns Z_STREAM_END or an
+ error. However if all decompression is to be performed in a single step (a
+ single call of inflate), the parameter flush should be set to Z_FINISH. In
+ this case all pending input is processed and all pending output is flushed;
+ avail_out must be large enough to hold all of the uncompressed data for the
+ operation to complete. (The size of the uncompressed data may have been
+ saved by the compressor for this purpose.) The use of Z_FINISH is not
+ required to perform an inflation in one step. However it may be used to
+ inform inflate that a faster approach can be used for the single inflate()
+ call. Z_FINISH also informs inflate to not maintain a sliding window if the
+ stream completes, which reduces inflate's memory footprint. If the stream
+ does not complete, either because not all of the stream is provided or not
+ enough output space is provided, then a sliding window will be allocated and
+ inflate() can be called again to continue the operation as if Z_NO_FLUSH had
+ been used.
+
+ In this implementation, inflate() always flushes as much output as
+ possible to the output buffer, and always uses the faster approach on the
+ first call. So the effects of the flush parameter in this implementation are
+ on the return value of inflate() as noted below, when inflate() returns early
+ when Z_BLOCK or Z_TREES is used, and when inflate() avoids the allocation of
+ memory for a sliding window when Z_FINISH is used.
+
+ If a preset dictionary is needed after this call (see inflateSetDictionary
+ below), inflate sets strm->adler to the Adler-32 checksum of the dictionary
+ chosen by the compressor and returns Z_NEED_DICT; otherwise it sets
+ strm->adler to the Adler-32 checksum of all output produced so far (that is,
+ total_out bytes) and returns Z_OK, Z_STREAM_END or an error code as described
+ below. At the end of the stream, inflate() checks that its computed adler32
+ checksum is equal to that saved by the compressor and returns Z_STREAM_END
+ only if the checksum is correct.
+
+ inflate() can decompress and check either zlib-wrapped or gzip-wrapped
+ deflate data. The header type is detected automatically, if requested when
+ initializing with inflateInit2(). Any information contained in the gzip
+ header is not retained, so applications that need that information should
+ instead use raw inflate, see inflateInit2() below, or inflateBack() and
+ perform their own processing of the gzip header and trailer. When processing
+ gzip-wrapped deflate data, strm->adler32 is set to the CRC-32 of the output
+ producted so far. The CRC-32 is checked against the gzip trailer.
+
+ inflate() returns Z_OK if some progress has been made (more input processed
+ or more output produced), Z_STREAM_END if the end of the compressed data has
+ been reached and all uncompressed output has been produced, Z_NEED_DICT if a
+ preset dictionary is needed at this point, Z_DATA_ERROR if the input data was
+ corrupted (input stream not conforming to the zlib format or incorrect check
+ value), Z_STREAM_ERROR if the stream structure was inconsistent (for example
+ next_in or next_out was Z_NULL), Z_MEM_ERROR if there was not enough memory,
+ Z_BUF_ERROR if no progress is possible or if there was not enough room in the
+ output buffer when Z_FINISH is used. Note that Z_BUF_ERROR is not fatal, and
+ inflate() can be called again with more input and more output space to
+ continue decompressing. If Z_DATA_ERROR is returned, the application may
+ then call inflateSync() to look for a good compression block if a partial
+ recovery of the data is desired.
+*/
+
+
+ZEXTERN int ZEXPORT inflateEnd OF((z_streamp strm));
+/*
+ All dynamically allocated data structures for this stream are freed.
+ This function discards any unprocessed input and does not flush any pending
+ output.
+
+ inflateEnd returns Z_OK if success, Z_STREAM_ERROR if the stream state
+ was inconsistent. In the error case, msg may be set but then points to a
+ static string (which must not be deallocated).
+*/
+
+
+ /* Advanced functions */
+
+/*
+ The following functions are needed only in some special applications.
+*/
+
+/*
+ZEXTERN int ZEXPORT deflateInit2 OF((z_streamp strm,
+ int level,
+ int method,
+ int windowBits,
+ int memLevel,
+ int strategy));
+
+ This is another version of deflateInit with more compression options. The
+ fields next_in, zalloc, zfree and opaque must be initialized before by the
+ caller.
+
+ The method parameter is the compression method. It must be Z_DEFLATED in
+ this version of the library.
+
+ The windowBits parameter is the base two logarithm of the window size
+ (the size of the history buffer). It should be in the range 8..15 for this
+ version of the library. Larger values of this parameter result in better
+ compression at the expense of memory usage. The default value is 15 if
+ deflateInit is used instead.
+
+ windowBits can also be -8..-15 for raw deflate. In this case, -windowBits
+ determines the window size. deflate() will then generate raw deflate data
+ with no zlib header or trailer, and will not compute an adler32 check value.
+
+ windowBits can also be greater than 15 for optional gzip encoding. Add
+ 16 to windowBits to write a simple gzip header and trailer around the
+ compressed data instead of a zlib wrapper. The gzip header will have no
+ file name, no extra data, no comment, no modification time (set to zero), no
+ header crc, and the operating system will be set to 255 (unknown). If a
+ gzip stream is being written, strm->adler is a crc32 instead of an adler32.
+
+ The memLevel parameter specifies how much memory should be allocated
+ for the internal compression state. memLevel=1 uses minimum memory but is
+ slow and reduces compression ratio; memLevel=9 uses maximum memory for
+ optimal speed. The default value is 8. See zconf.h for total memory usage
+ as a function of windowBits and memLevel.
+
+ The strategy parameter is used to tune the compression algorithm. Use the
+ value Z_DEFAULT_STRATEGY for normal data, Z_FILTERED for data produced by a
+ filter (or predictor), Z_HUFFMAN_ONLY to force Huffman encoding only (no
+ string match), or Z_RLE to limit match distances to one (run-length
+ encoding). Filtered data consists mostly of small values with a somewhat
+ random distribution. In this case, the compression algorithm is tuned to
+ compress them better. The effect of Z_FILTERED is to force more Huffman
+ coding and less string matching; it is somewhat intermediate between
+ Z_DEFAULT_STRATEGY and Z_HUFFMAN_ONLY. Z_RLE is designed to be almost as
+ fast as Z_HUFFMAN_ONLY, but give better compression for PNG image data. The
+ strategy parameter only affects the compression ratio but not the
+ correctness of the compressed output even if it is not set appropriately.
+ Z_FIXED prevents the use of dynamic Huffman codes, allowing for a simpler
+ decoder for special applications.
+
+ deflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_STREAM_ERROR if any parameter is invalid (such as an invalid
+ method), or Z_VERSION_ERROR if the zlib library version (zlib_version) is
+ incompatible with the version assumed by the caller (ZLIB_VERSION). msg is
+ set to null if there is no error message. deflateInit2 does not perform any
+ compression: this will be done by deflate().
+*/
+
+ZEXTERN int ZEXPORT deflateSetDictionary OF((z_streamp strm,
+ const Bytef *dictionary,
+ uInt dictLength));
+/*
+ Initializes the compression dictionary from the given byte sequence
+ without producing any compressed output. When using the zlib format, this
+ function must be called immediately after deflateInit, deflateInit2 or
+ deflateReset, and before any call of deflate. When doing raw deflate, this
+ function must be called either before any call of deflate, or immediately
+ after the completion of a deflate block, i.e. after all input has been
+ consumed and all output has been delivered when using any of the flush
+ options Z_BLOCK, Z_PARTIAL_FLUSH, Z_SYNC_FLUSH, or Z_FULL_FLUSH. The
+ compressor and decompressor must use exactly the same dictionary (see
+ inflateSetDictionary).
+
+ The dictionary should consist of strings (byte sequences) that are likely
+ to be encountered later in the data to be compressed, with the most commonly
+ used strings preferably put towards the end of the dictionary. Using a
+ dictionary is most useful when the data to be compressed is short and can be
+ predicted with good accuracy; the data can then be compressed better than
+ with the default empty dictionary.
+
+ Depending on the size of the compression data structures selected by
+ deflateInit or deflateInit2, a part of the dictionary may in effect be
+ discarded, for example if the dictionary is larger than the window size
+ provided in deflateInit or deflateInit2. Thus the strings most likely to be
+ useful should be put at the end of the dictionary, not at the front. In
+ addition, the current implementation of deflate will use at most the window
+ size minus 262 bytes of the provided dictionary.
+
+ Upon return of this function, strm->adler is set to the adler32 value
+ of the dictionary; the decompressor may later use this value to determine
+ which dictionary has been used by the compressor. (The adler32 value
+ applies to the whole dictionary even if only a subset of the dictionary is
+ actually used by the compressor.) If a raw deflate was requested, then the
+ adler32 value is not computed and strm->adler is not set.
+
+ deflateSetDictionary returns Z_OK if success, or Z_STREAM_ERROR if a
+ parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is
+ inconsistent (for example if deflate has already been called for this stream
+ or if not at a block boundary for raw deflate). deflateSetDictionary does
+ not perform any compression: this will be done by deflate().
+*/
+
+ZEXTERN int ZEXPORT deflateCopy OF((z_streamp dest,
+ z_streamp source));
+/*
+ Sets the destination stream as a complete copy of the source stream.
+
+ This function can be useful when several compression strategies will be
+ tried, for example when there are several ways of pre-processing the input
+ data with a filter. The streams that will be discarded should then be freed
+ by calling deflateEnd. Note that deflateCopy duplicates the internal
+ compression state which can be quite large, so this strategy is slow and can
+ consume lots of memory.
+
+ deflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_STREAM_ERROR if the source stream state was inconsistent
+ (such as zalloc being Z_NULL). msg is left unchanged in both source and
+ destination.
+*/
+
+ZEXTERN int ZEXPORT deflateReset OF((z_streamp strm));
+/*
+ This function is equivalent to deflateEnd followed by deflateInit,
+ but does not free and reallocate all the internal compression state. The
+ stream will keep the same compression level and any other attributes that
+ may have been set by deflateInit2.
+
+ deflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL).
+*/
+
+ZEXTERN int ZEXPORT deflateParams OF((z_streamp strm,
+ int level,
+ int strategy));
+/*
+ Dynamically update the compression level and compression strategy. The
+ interpretation of level and strategy is as in deflateInit2. This can be
+ used to switch between compression and straight copy of the input data, or
+ to switch to a different kind of input data requiring a different strategy.
+ If the compression level is changed, the input available so far is
+ compressed with the old level (and may be flushed); the new level will take
+ effect only at the next call of deflate().
+
+ Before the call of deflateParams, the stream state must be set as for
+ a call of deflate(), since the currently available input may have to be
+ compressed and flushed. In particular, strm->avail_out must be non-zero.
+
+ deflateParams returns Z_OK if success, Z_STREAM_ERROR if the source
+ stream state was inconsistent or if a parameter was invalid, Z_BUF_ERROR if
+ strm->avail_out was zero.
+*/
+
+ZEXTERN int ZEXPORT deflateTune OF((z_streamp strm,
+ int good_length,
+ int max_lazy,
+ int nice_length,
+ int max_chain));
+/*
+ Fine tune deflate's internal compression parameters. This should only be
+ used by someone who understands the algorithm used by zlib's deflate for
+ searching for the best matching string, and even then only by the most
+ fanatic optimizer trying to squeeze out the last compressed bit for their
+ specific input data. Read the deflate.c source code for the meaning of the
+ max_lazy, good_length, nice_length, and max_chain parameters.
+
+ deflateTune() can be called after deflateInit() or deflateInit2(), and
+ returns Z_OK on success, or Z_STREAM_ERROR for an invalid deflate stream.
+ */
+
+ZEXTERN uLong ZEXPORT deflateBound OF((z_streamp strm,
+ uLong sourceLen));
+/*
+ deflateBound() returns an upper bound on the compressed size after
+ deflation of sourceLen bytes. It must be called after deflateInit() or
+ deflateInit2(), and after deflateSetHeader(), if used. This would be used
+ to allocate an output buffer for deflation in a single pass, and so would be
+ called before deflate(). If that first deflate() call is provided the
+ sourceLen input bytes, an output buffer allocated to the size returned by
+ deflateBound(), and the flush value Z_FINISH, then deflate() is guaranteed
+ to return Z_STREAM_END. Note that it is possible for the compressed size to
+ be larger than the value returned by deflateBound() if flush options other
+ than Z_FINISH or Z_NO_FLUSH are used.
+*/
+
+ZEXTERN int ZEXPORT deflatePending OF((z_streamp strm,
+ unsigned *pending,
+ int *bits));
+/*
+ deflatePending() returns the number of bytes and bits of output that have
+ been generated, but not yet provided in the available output. The bytes not
+ provided would be due to the available output space having being consumed.
+ The number of bits of output not provided are between 0 and 7, where they
+ await more bits to join them in order to fill out a full byte. If pending
+ or bits are Z_NULL, then those values are not set.
+
+ deflatePending returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+ */
+
+ZEXTERN int ZEXPORT deflatePrime OF((z_streamp strm,
+ int bits,
+ int value));
+/*
+ deflatePrime() inserts bits in the deflate output stream. The intent
+ is that this function is used to start off the deflate output with the bits
+ leftover from a previous deflate stream when appending to it. As such, this
+ function can only be used for raw deflate, and must be used before the first
+ deflate() call after a deflateInit2() or deflateReset(). bits must be less
+ than or equal to 16, and that many of the least significant bits of value
+ will be inserted in the output.
+
+ deflatePrime returns Z_OK if success, Z_BUF_ERROR if there was not enough
+ room in the internal buffer to insert the bits, or Z_STREAM_ERROR if the
+ source stream state was inconsistent.
+*/
+
+ZEXTERN int ZEXPORT deflateSetHeader OF((z_streamp strm,
+ gz_headerp head));
+/*
+ deflateSetHeader() provides gzip header information for when a gzip
+ stream is requested by deflateInit2(). deflateSetHeader() may be called
+ after deflateInit2() or deflateReset() and before the first call of
+ deflate(). The text, time, os, extra field, name, and comment information
+ in the provided gz_header structure are written to the gzip header (xflag is
+ ignored -- the extra flags are set according to the compression level). The
+ caller must assure that, if not Z_NULL, name and comment are terminated with
+ a zero byte, and that if extra is not Z_NULL, that extra_len bytes are
+ available there. If hcrc is true, a gzip header crc is included. Note that
+ the current versions of the command-line version of gzip (up through version
+ 1.3.x) do not support header crc's, and will report that it is a "multi-part
+ gzip file" and give up.
+
+ If deflateSetHeader is not used, the default gzip header has text false,
+ the time set to zero, and os set to 255, with no extra, name, or comment
+ fields. The gzip header is returned to the default state by deflateReset().
+
+ deflateSetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+/*
+ZEXTERN int ZEXPORT inflateInit2 OF((z_streamp strm,
+ int windowBits));
+
+ This is another version of inflateInit with an extra parameter. The
+ fields next_in, avail_in, zalloc, zfree and opaque must be initialized
+ before by the caller.
+
+ The windowBits parameter is the base two logarithm of the maximum window
+ size (the size of the history buffer). It should be in the range 8..15 for
+ this version of the library. The default value is 15 if inflateInit is used
+ instead. windowBits must be greater than or equal to the windowBits value
+ provided to deflateInit2() while compressing, or it must be equal to 15 if
+ deflateInit2() was not used. If a compressed stream with a larger window
+ size is given as input, inflate() will return with the error code
+ Z_DATA_ERROR instead of trying to allocate a larger window.
+
+ windowBits can also be zero to request that inflate use the window size in
+ the zlib header of the compressed stream.
+
+ windowBits can also be -8..-15 for raw inflate. In this case, -windowBits
+ determines the window size. inflate() will then process raw deflate data,
+ not looking for a zlib or gzip header, not generating a check value, and not
+ looking for any check values for comparison at the end of the stream. This
+ is for use with other formats that use the deflate compressed data format
+ such as zip. Those formats provide their own check values. If a custom
+ format is developed using the raw deflate format for compressed data, it is
+ recommended that a check value such as an adler32 or a crc32 be applied to
+ the uncompressed data as is done in the zlib, gzip, and zip formats. For
+ most applications, the zlib format should be used as is. Note that comments
+ above on the use in deflateInit2() applies to the magnitude of windowBits.
+
+ windowBits can also be greater than 15 for optional gzip decoding. Add
+ 32 to windowBits to enable zlib and gzip decoding with automatic header
+ detection, or add 16 to decode only the gzip format (the zlib format will
+ return a Z_DATA_ERROR). If a gzip stream is being decoded, strm->adler is a
+ crc32 instead of an adler32.
+
+ inflateInit2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_VERSION_ERROR if the zlib library version is incompatible with the
+ version assumed by the caller, or Z_STREAM_ERROR if the parameters are
+ invalid, such as a null pointer to the structure. msg is set to null if
+ there is no error message. inflateInit2 does not perform any decompression
+ apart from possibly reading the zlib header if present: actual decompression
+ will be done by inflate(). (So next_in and avail_in may be modified, but
+ next_out and avail_out are unused and unchanged.) The current implementation
+ of inflateInit2() does not process any header information -- that is
+ deferred until inflate() is called.
+*/
+
+ZEXTERN int ZEXPORT inflateSetDictionary OF((z_streamp strm,
+ const Bytef *dictionary,
+ uInt dictLength));
+/*
+ Initializes the decompression dictionary from the given uncompressed byte
+ sequence. This function must be called immediately after a call of inflate,
+ if that call returned Z_NEED_DICT. The dictionary chosen by the compressor
+ can be determined from the adler32 value returned by that call of inflate.
+ The compressor and decompressor must use exactly the same dictionary (see
+ deflateSetDictionary). For raw inflate, this function can be called at any
+ time to set the dictionary. If the provided dictionary is smaller than the
+ window and there is already data in the window, then the provided dictionary
+ will amend what's there. The application must insure that the dictionary
+ that was used for compression is provided.
+
+ inflateSetDictionary returns Z_OK if success, Z_STREAM_ERROR if a
+ parameter is invalid (e.g. dictionary being Z_NULL) or the stream state is
+ inconsistent, Z_DATA_ERROR if the given dictionary doesn't match the
+ expected one (incorrect adler32 value). inflateSetDictionary does not
+ perform any decompression: this will be done by subsequent calls of
+ inflate().
+*/
+
+ZEXTERN int ZEXPORT inflateGetDictionary OF((z_streamp strm,
+ Bytef *dictionary,
+ uInt *dictLength));
+/*
+ Returns the sliding dictionary being maintained by inflate. dictLength is
+ set to the number of bytes in the dictionary, and that many bytes are copied
+ to dictionary. dictionary must have enough space, where 32768 bytes is
+ always enough. If inflateGetDictionary() is called with dictionary equal to
+ Z_NULL, then only the dictionary length is returned, and nothing is copied.
+ Similary, if dictLength is Z_NULL, then it is not set.
+
+ inflateGetDictionary returns Z_OK on success, or Z_STREAM_ERROR if the
+ stream state is inconsistent.
+*/
+
+ZEXTERN int ZEXPORT inflateSync OF((z_streamp strm));
+/*
+ Skips invalid compressed data until a possible full flush point (see above
+ for the description of deflate with Z_FULL_FLUSH) can be found, or until all
+ available input is skipped. No output is provided.
+
+ inflateSync searches for a 00 00 FF FF pattern in the compressed data.
+ All full flush points have this pattern, but not all occurrences of this
+ pattern are full flush points.
+
+ inflateSync returns Z_OK if a possible full flush point has been found,
+ Z_BUF_ERROR if no more input was provided, Z_DATA_ERROR if no flush point
+ has been found, or Z_STREAM_ERROR if the stream structure was inconsistent.
+ In the success case, the application may save the current current value of
+ total_in which indicates where valid compressed data was found. In the
+ error case, the application may repeatedly call inflateSync, providing more
+ input each time, until success or end of the input data.
+*/
+
+ZEXTERN int ZEXPORT inflateCopy OF((z_streamp dest,
+ z_streamp source));
+/*
+ Sets the destination stream as a complete copy of the source stream.
+
+ This function can be useful when randomly accessing a large stream. The
+ first pass through the stream can periodically record the inflate state,
+ allowing restarting inflate at those points when randomly accessing the
+ stream.
+
+ inflateCopy returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_STREAM_ERROR if the source stream state was inconsistent
+ (such as zalloc being Z_NULL). msg is left unchanged in both source and
+ destination.
+*/
+
+ZEXTERN int ZEXPORT inflateReset OF((z_streamp strm));
+/*
+ This function is equivalent to inflateEnd followed by inflateInit,
+ but does not free and reallocate all the internal decompression state. The
+ stream will keep attributes that may have been set by inflateInit2.
+
+ inflateReset returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL).
+*/
+
+ZEXTERN int ZEXPORT inflateReset2 OF((z_streamp strm,
+ int windowBits));
+/*
+ This function is the same as inflateReset, but it also permits changing
+ the wrap and window size requests. The windowBits parameter is interpreted
+ the same as it is for inflateInit2.
+
+ inflateReset2 returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent (such as zalloc or state being Z_NULL), or if
+ the windowBits parameter is invalid.
+*/
+
+ZEXTERN int ZEXPORT inflatePrime OF((z_streamp strm,
+ int bits,
+ int value));
+/*
+ This function inserts bits in the inflate input stream. The intent is
+ that this function is used to start inflating at a bit position in the
+ middle of a byte. The provided bits will be used before any bytes are used
+ from next_in. This function should only be used with raw inflate, and
+ should be used before the first inflate() call after inflateInit2() or
+ inflateReset(). bits must be less than or equal to 16, and that many of the
+ least significant bits of value will be inserted in the input.
+
+ If bits is negative, then the input stream bit buffer is emptied. Then
+ inflatePrime() can be called again to put bits in the buffer. This is used
+ to clear out bits leftover after feeding inflate a block description prior
+ to feeding inflate codes.
+
+ inflatePrime returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+ZEXTERN long ZEXPORT inflateMark OF((z_streamp strm));
+/*
+ This function returns two values, one in the lower 16 bits of the return
+ value, and the other in the remaining upper bits, obtained by shifting the
+ return value down 16 bits. If the upper value is -1 and the lower value is
+ zero, then inflate() is currently decoding information outside of a block.
+ If the upper value is -1 and the lower value is non-zero, then inflate is in
+ the middle of a stored block, with the lower value equaling the number of
+ bytes from the input remaining to copy. If the upper value is not -1, then
+ it is the number of bits back from the current bit position in the input of
+ the code (literal or length/distance pair) currently being processed. In
+ that case the lower value is the number of bytes already emitted for that
+ code.
+
+ A code is being processed if inflate is waiting for more input to complete
+ decoding of the code, or if it has completed decoding but is waiting for
+ more output space to write the literal or match data.
+
+ inflateMark() is used to mark locations in the input data for random
+ access, which may be at bit positions, and to note those cases where the
+ output of a code may span boundaries of random access blocks. The current
+ location in the input stream can be determined from avail_in and data_type
+ as noted in the description for the Z_BLOCK flush parameter for inflate.
+
+ inflateMark returns the value noted above or -1 << 16 if the provided
+ source stream state was inconsistent.
+*/
+
+ZEXTERN int ZEXPORT inflateGetHeader OF((z_streamp strm,
+ gz_headerp head));
+/*
+ inflateGetHeader() requests that gzip header information be stored in the
+ provided gz_header structure. inflateGetHeader() may be called after
+ inflateInit2() or inflateReset(), and before the first call of inflate().
+ As inflate() processes the gzip stream, head->done is zero until the header
+ is completed, at which time head->done is set to one. If a zlib stream is
+ being decoded, then head->done is set to -1 to indicate that there will be
+ no gzip header information forthcoming. Note that Z_BLOCK or Z_TREES can be
+ used to force inflate() to return immediately after header processing is
+ complete and before any actual data is decompressed.
+
+ The text, time, xflags, and os fields are filled in with the gzip header
+ contents. hcrc is set to true if there is a header CRC. (The header CRC
+ was valid if done is set to one.) If extra is not Z_NULL, then extra_max
+ contains the maximum number of bytes to write to extra. Once done is true,
+ extra_len contains the actual extra field length, and extra contains the
+ extra field, or that field truncated if extra_max is less than extra_len.
+ If name is not Z_NULL, then up to name_max characters are written there,
+ terminated with a zero unless the length is greater than name_max. If
+ comment is not Z_NULL, then up to comm_max characters are written there,
+ terminated with a zero unless the length is greater than comm_max. When any
+ of extra, name, or comment are not Z_NULL and the respective field is not
+ present in the header, then that field is set to Z_NULL to signal its
+ absence. This allows the use of deflateSetHeader() with the returned
+ structure to duplicate the header. However if those fields are set to
+ allocated memory, then the application will need to save those pointers
+ elsewhere so that they can be eventually freed.
+
+ If inflateGetHeader is not used, then the header information is simply
+ discarded. The header is always checked for validity, including the header
+ CRC if present. inflateReset() will reset the process to discard the header
+ information. The application would need to call inflateGetHeader() again to
+ retrieve the header from the next gzip stream.
+
+ inflateGetHeader returns Z_OK if success, or Z_STREAM_ERROR if the source
+ stream state was inconsistent.
+*/
+
+/*
+ZEXTERN int ZEXPORT inflateBackInit OF((z_streamp strm, int windowBits,
+ unsigned char FAR *window));
+
+ Initialize the internal stream state for decompression using inflateBack()
+ calls. The fields zalloc, zfree and opaque in strm must be initialized
+ before the call. If zalloc and zfree are Z_NULL, then the default library-
+ derived memory allocation routines are used. windowBits is the base two
+ logarithm of the window size, in the range 8..15. window is a caller
+ supplied buffer of that size. Except for special applications where it is
+ assured that deflate was used with small window sizes, windowBits must be 15
+ and a 32K byte window must be supplied to be able to decompress general
+ deflate streams.
+
+ See inflateBack() for the usage of these routines.
+
+ inflateBackInit will return Z_OK on success, Z_STREAM_ERROR if any of
+ the parameters are invalid, Z_MEM_ERROR if the internal state could not be
+ allocated, or Z_VERSION_ERROR if the version of the library does not match
+ the version of the header file.
+*/
+
+typedef unsigned (*in_func) OF((void FAR *,
+ z_const unsigned char FAR * FAR *));
+typedef int (*out_func) OF((void FAR *, unsigned char FAR *, unsigned));
+
+ZEXTERN int ZEXPORT inflateBack OF((z_streamp strm,
+ in_func in, void FAR *in_desc,
+ out_func out, void FAR *out_desc));
+/*
+ inflateBack() does a raw inflate with a single call using a call-back
+ interface for input and output. This is potentially more efficient than
+ inflate() for file i/o applications, in that it avoids copying between the
+ output and the sliding window by simply making the window itself the output
+ buffer. inflate() can be faster on modern CPUs when used with large
+ buffers. inflateBack() trusts the application to not change the output
+ buffer passed by the output function, at least until inflateBack() returns.
+
+ inflateBackInit() must be called first to allocate the internal state
+ and to initialize the state with the user-provided window buffer.
+ inflateBack() may then be used multiple times to inflate a complete, raw
+ deflate stream with each call. inflateBackEnd() is then called to free the
+ allocated state.
+
+ A raw deflate stream is one with no zlib or gzip header or trailer.
+ This routine would normally be used in a utility that reads zip or gzip
+ files and writes out uncompressed files. The utility would decode the
+ header and process the trailer on its own, hence this routine expects only
+ the raw deflate stream to decompress. This is different from the normal
+ behavior of inflate(), which expects either a zlib or gzip header and
+ trailer around the deflate stream.
+
+ inflateBack() uses two subroutines supplied by the caller that are then
+ called by inflateBack() for input and output. inflateBack() calls those
+ routines until it reads a complete deflate stream and writes out all of the
+ uncompressed data, or until it encounters an error. The function's
+ parameters and return types are defined above in the in_func and out_func
+ typedefs. inflateBack() will call in(in_desc, &buf) which should return the
+ number of bytes of provided input, and a pointer to that input in buf. If
+ there is no input available, in() must return zero--buf is ignored in that
+ case--and inflateBack() will return a buffer error. inflateBack() will call
+ out(out_desc, buf, len) to write the uncompressed data buf[0..len-1]. out()
+ should return zero on success, or non-zero on failure. If out() returns
+ non-zero, inflateBack() will return with an error. Neither in() nor out()
+ are permitted to change the contents of the window provided to
+ inflateBackInit(), which is also the buffer that out() uses to write from.
+ The length written by out() will be at most the window size. Any non-zero
+ amount of input may be provided by in().
+
+ For convenience, inflateBack() can be provided input on the first call by
+ setting strm->next_in and strm->avail_in. If that input is exhausted, then
+ in() will be called. Therefore strm->next_in must be initialized before
+ calling inflateBack(). If strm->next_in is Z_NULL, then in() will be called
+ immediately for input. If strm->next_in is not Z_NULL, then strm->avail_in
+ must also be initialized, and then if strm->avail_in is not zero, input will
+ initially be taken from strm->next_in[0 .. strm->avail_in - 1].
+
+ The in_desc and out_desc parameters of inflateBack() is passed as the
+ first parameter of in() and out() respectively when they are called. These
+ descriptors can be optionally used to pass any information that the caller-
+ supplied in() and out() functions need to do their job.
+
+ On return, inflateBack() will set strm->next_in and strm->avail_in to
+ pass back any unused input that was provided by the last in() call. The
+ return values of inflateBack() can be Z_STREAM_END on success, Z_BUF_ERROR
+ if in() or out() returned an error, Z_DATA_ERROR if there was a format error
+ in the deflate stream (in which case strm->msg is set to indicate the nature
+ of the error), or Z_STREAM_ERROR if the stream was not properly initialized.
+ In the case of Z_BUF_ERROR, an input or output error can be distinguished
+ using strm->next_in which will be Z_NULL only if in() returned an error. If
+ strm->next_in is not Z_NULL, then the Z_BUF_ERROR was due to out() returning
+ non-zero. (in() will always be called before out(), so strm->next_in is
+ assured to be defined if out() returns non-zero.) Note that inflateBack()
+ cannot return Z_OK.
+*/
+
+ZEXTERN int ZEXPORT inflateBackEnd OF((z_streamp strm));
+/*
+ All memory allocated by inflateBackInit() is freed.
+
+ inflateBackEnd() returns Z_OK on success, or Z_STREAM_ERROR if the stream
+ state was inconsistent.
+*/
+
+ZEXTERN uLong ZEXPORT zlibCompileFlags OF((void));
+/* Return flags indicating compile-time options.
+
+ Type sizes, two bits each, 00 = 16 bits, 01 = 32, 10 = 64, 11 = other:
+ 1.0: size of uInt
+ 3.2: size of uLong
+ 5.4: size of voidpf (pointer)
+ 7.6: size of z_off_t
+
+ Compiler, assembler, and debug options:
+ 8: DEBUG
+ 9: ASMV or ASMINF -- use ASM code
+ 10: ZLIB_WINAPI -- exported functions use the WINAPI calling convention
+ 11: 0 (reserved)
+
+ One-time table building (smaller code, but not thread-safe if true):
+ 12: BUILDFIXED -- build static block decoding tables when needed
+ 13: DYNAMIC_CRC_TABLE -- build CRC calculation tables when needed
+ 14,15: 0 (reserved)
+
+ Library content (indicates missing functionality):
+ 16: NO_GZCOMPRESS -- gz* functions cannot compress (to avoid linking
+ deflate code when not needed)
+ 17: NO_GZIP -- deflate can't write gzip streams, and inflate can't detect
+ and decode gzip streams (to avoid linking crc code)
+ 18-19: 0 (reserved)
+
+ Operation variations (changes in library functionality):
+ 20: PKZIP_BUG_WORKAROUND -- slightly more permissive inflate
+ 21: FASTEST -- deflate algorithm with only one, lowest compression level
+ 22,23: 0 (reserved)
+
+ The sprintf variant used by gzprintf (zero is best):
+ 24: 0 = vs*, 1 = s* -- 1 means limited to 20 arguments after the format
+ 25: 0 = *nprintf, 1 = *printf -- 1 means gzprintf() not secure!
+ 26: 0 = returns value, 1 = void -- 1 means inferred string length returned
+
+ Remainder:
+ 27-31: 0 (reserved)
+ */
+
+#ifndef Z_SOLO
+
+ /* utility functions */
+
+/*
+ The following utility functions are implemented on top of the basic
+ stream-oriented functions. To simplify the interface, some default options
+ are assumed (compression level and memory usage, standard memory allocation
+ functions). The source code of these utility functions can be modified if
+ you need special options.
+*/
+
+ZEXTERN int ZEXPORT compress OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen));
+/*
+ Compresses the source buffer into the destination buffer. sourceLen is
+ the byte length of the source buffer. Upon entry, destLen is the total size
+ of the destination buffer, which must be at least the value returned by
+ compressBound(sourceLen). Upon exit, destLen is the actual size of the
+ compressed buffer.
+
+ compress returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_BUF_ERROR if there was not enough room in the output
+ buffer.
+*/
+
+ZEXTERN int ZEXPORT compress2 OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen,
+ int level));
+/*
+ Compresses the source buffer into the destination buffer. The level
+ parameter has the same meaning as in deflateInit. sourceLen is the byte
+ length of the source buffer. Upon entry, destLen is the total size of the
+ destination buffer, which must be at least the value returned by
+ compressBound(sourceLen). Upon exit, destLen is the actual size of the
+ compressed buffer.
+
+ compress2 returns Z_OK if success, Z_MEM_ERROR if there was not enough
+ memory, Z_BUF_ERROR if there was not enough room in the output buffer,
+ Z_STREAM_ERROR if the level parameter is invalid.
+*/
+
+ZEXTERN uLong ZEXPORT compressBound OF((uLong sourceLen));
+/*
+ compressBound() returns an upper bound on the compressed size after
+ compress() or compress2() on sourceLen bytes. It would be used before a
+ compress() or compress2() call to allocate the destination buffer.
+*/
+
+ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen,
+ const Bytef *source, uLong sourceLen));
+/*
+ Decompresses the source buffer into the destination buffer. sourceLen is
+ the byte length of the source buffer. Upon entry, destLen is the total size
+ of the destination buffer, which must be large enough to hold the entire
+ uncompressed data. (The size of the uncompressed data must have been saved
+ previously by the compressor and transmitted to the decompressor by some
+ mechanism outside the scope of this compression library.) Upon exit, destLen
+ is the actual size of the uncompressed buffer.
+
+ uncompress returns Z_OK if success, Z_MEM_ERROR if there was not
+ enough memory, Z_BUF_ERROR if there was not enough room in the output
+ buffer, or Z_DATA_ERROR if the input data was corrupted or incomplete. In
+ the case where there is not enough room, uncompress() will fill the output
+ buffer with the uncompressed data up to that point.
+*/
+
+ /* gzip file access functions */
+
+/*
+ This library supports reading and writing files in gzip (.gz) format with
+ an interface similar to that of stdio, using the functions that start with
+ "gz". The gzip format is different from the zlib format. gzip is a gzip
+ wrapper, documented in RFC 1952, wrapped around a deflate stream.
+*/
+
+typedef struct gzFile_s *gzFile; /* semi-opaque gzip file descriptor */
+
+/*
+ZEXTERN gzFile ZEXPORT gzopen OF((const char *path, const char *mode));
+
+ Opens a gzip (.gz) file for reading or writing. The mode parameter is as
+ in fopen ("rb" or "wb") but can also include a compression level ("wb9") or
+ a strategy: 'f' for filtered data as in "wb6f", 'h' for Huffman-only
+ compression as in "wb1h", 'R' for run-length encoding as in "wb1R", or 'F'
+ for fixed code compression as in "wb9F". (See the description of
+ deflateInit2 for more information about the strategy parameter.) 'T' will
+ request transparent writing or appending with no compression and not using
+ the gzip format.
+
+ "a" can be used instead of "w" to request that the gzip stream that will
+ be written be appended to the file. "+" will result in an error, since
+ reading and writing to the same gzip file is not supported. The addition of
+ "x" when writing will create the file exclusively, which fails if the file
+ already exists. On systems that support it, the addition of "e" when
+ reading or writing will set the flag to close the file on an execve() call.
+
+ These functions, as well as gzip, will read and decode a sequence of gzip
+ streams in a file. The append function of gzopen() can be used to create
+ such a file. (Also see gzflush() for another way to do this.) When
+ appending, gzopen does not test whether the file begins with a gzip stream,
+ nor does it look for the end of the gzip streams to begin appending. gzopen
+ will simply append a gzip stream to the existing file.
+
+ gzopen can be used to read a file which is not in gzip format; in this
+ case gzread will directly read from the file without decompression. When
+ reading, this will be detected automatically by looking for the magic two-
+ byte gzip header.
+
+ gzopen returns NULL if the file could not be opened, if there was
+ insufficient memory to allocate the gzFile state, or if an invalid mode was
+ specified (an 'r', 'w', or 'a' was not provided, or '+' was provided).
+ errno can be checked to determine if the reason gzopen failed was that the
+ file could not be opened.
+*/
+
+ZEXTERN gzFile ZEXPORT gzdopen OF((int fd, const char *mode));
+/*
+ gzdopen associates a gzFile with the file descriptor fd. File descriptors
+ are obtained from calls like open, dup, creat, pipe or fileno (if the file
+ has been previously opened with fopen). The mode parameter is as in gzopen.
+
+ The next call of gzclose on the returned gzFile will also close the file
+ descriptor fd, just like fclose(fdopen(fd, mode)) closes the file descriptor
+ fd. If you want to keep fd open, use fd = dup(fd_keep); gz = gzdopen(fd,
+ mode);. The duplicated descriptor should be saved to avoid a leak, since
+ gzdopen does not close fd if it fails. If you are using fileno() to get the
+ file descriptor from a FILE *, then you will have to use dup() to avoid
+ double-close()ing the file descriptor. Both gzclose() and fclose() will
+ close the associated file descriptor, so they need to have different file
+ descriptors.
+
+ gzdopen returns NULL if there was insufficient memory to allocate the
+ gzFile state, if an invalid mode was specified (an 'r', 'w', or 'a' was not
+ provided, or '+' was provided), or if fd is -1. The file descriptor is not
+ used until the next gz* read, write, seek, or close operation, so gzdopen
+ will not detect if fd is invalid (unless fd is -1).
+*/
+
+ZEXTERN int ZEXPORT gzbuffer OF((gzFile file, unsigned size));
+/*
+ Set the internal buffer size used by this library's functions. The
+ default buffer size is 8192 bytes. This function must be called after
+ gzopen() or gzdopen(), and before any other calls that read or write the
+ file. The buffer memory allocation is always deferred to the first read or
+ write. Two buffers are allocated, either both of the specified size when
+ writing, or one of the specified size and the other twice that size when
+ reading. A larger buffer size of, for example, 64K or 128K bytes will
+ noticeably increase the speed of decompression (reading).
+
+ The new buffer size also affects the maximum length for gzprintf().
+
+ gzbuffer() returns 0 on success, or -1 on failure, such as being called
+ too late.
+*/
+
+ZEXTERN int ZEXPORT gzsetparams OF((gzFile file, int level, int strategy));
+/*
+ Dynamically update the compression level or strategy. See the description
+ of deflateInit2 for the meaning of these parameters.
+
+ gzsetparams returns Z_OK if success, or Z_STREAM_ERROR if the file was not
+ opened for writing.
+*/
+
+ZEXTERN int ZEXPORT gzread OF((gzFile file, voidp buf, unsigned len));
+/*
+ Reads the given number of uncompressed bytes from the compressed file. If
+ the input file is not in gzip format, gzread copies the given number of
+ bytes into the buffer directly from the file.
+
+ After reaching the end of a gzip stream in the input, gzread will continue
+ to read, looking for another gzip stream. Any number of gzip streams may be
+ concatenated in the input file, and will all be decompressed by gzread().
+ If something other than a gzip stream is encountered after a gzip stream,
+ that remaining trailing garbage is ignored (and no error is returned).
+
+ gzread can be used to read a gzip file that is being concurrently written.
+ Upon reaching the end of the input, gzread will return with the available
+ data. If the error code returned by gzerror is Z_OK or Z_BUF_ERROR, then
+ gzclearerr can be used to clear the end of file indicator in order to permit
+ gzread to be tried again. Z_OK indicates that a gzip stream was completed
+ on the last gzread. Z_BUF_ERROR indicates that the input file ended in the
+ middle of a gzip stream. Note that gzread does not return -1 in the event
+ of an incomplete gzip stream. This error is deferred until gzclose(), which
+ will return Z_BUF_ERROR if the last gzread ended in the middle of a gzip
+ stream. Alternatively, gzerror can be used before gzclose to detect this
+ case.
+
+ gzread returns the number of uncompressed bytes actually read, less than
+ len for end of file, or -1 for error.
+*/
+
+ZEXTERN int ZEXPORT gzwrite OF((gzFile file,
+ voidpc buf, unsigned len));
+/*
+ Writes the given number of uncompressed bytes into the compressed file.
+ gzwrite returns the number of uncompressed bytes written or 0 in case of
+ error.
+*/
+
+ZEXTERN int ZEXPORTVA gzprintf Z_ARG((gzFile file, const char *format, ...));
+/*
+ Converts, formats, and writes the arguments to the compressed file under
+ control of the format string, as in fprintf. gzprintf returns the number of
+ uncompressed bytes actually written, or 0 in case of error. The number of
+ uncompressed bytes written is limited to 8191, or one less than the buffer
+ size given to gzbuffer(). The caller should assure that this limit is not
+ exceeded. If it is exceeded, then gzprintf() will return an error (0) with
+ nothing written. In this case, there may also be a buffer overflow with
+ unpredictable consequences, which is possible only if zlib was compiled with
+ the insecure functions sprintf() or vsprintf() because the secure snprintf()
+ or vsnprintf() functions were not available. This can be determined using
+ zlibCompileFlags().
+*/
+
+ZEXTERN int ZEXPORT gzputs OF((gzFile file, const char *s));
+/*
+ Writes the given null-terminated string to the compressed file, excluding
+ the terminating null character.
+
+ gzputs returns the number of characters written, or -1 in case of error.
+*/
+
+ZEXTERN char * ZEXPORT gzgets OF((gzFile file, char *buf, int len));
+/*
+ Reads bytes from the compressed file until len-1 characters are read, or a
+ newline character is read and transferred to buf, or an end-of-file
+ condition is encountered. If any characters are read or if len == 1, the
+ string is terminated with a null character. If no characters are read due
+ to an end-of-file or len < 1, then the buffer is left untouched.
+
+ gzgets returns buf which is a null-terminated string, or it returns NULL
+ for end-of-file or in case of error. If there was an error, the contents at
+ buf are indeterminate.
+*/
+
+ZEXTERN int ZEXPORT gzputc OF((gzFile file, int c));
+/*
+ Writes c, converted to an unsigned char, into the compressed file. gzputc
+ returns the value that was written, or -1 in case of error.
+*/
+
+ZEXTERN int ZEXPORT gzgetc OF((gzFile file));
+/*
+ Reads one byte from the compressed file. gzgetc returns this byte or -1
+ in case of end of file or error. This is implemented as a macro for speed.
+ As such, it does not do all of the checking the other functions do. I.e.
+ it does not check to see if file is NULL, nor whether the structure file
+ points to has been clobbered or not.
+*/
+
+ZEXTERN int ZEXPORT gzungetc OF((int c, gzFile file));
+/*
+ Push one character back onto the stream to be read as the first character
+ on the next read. At least one character of push-back is allowed.
+ gzungetc() returns the character pushed, or -1 on failure. gzungetc() will
+ fail if c is -1, and may fail if a character has been pushed but not read
+ yet. If gzungetc is used immediately after gzopen or gzdopen, at least the
+ output buffer size of pushed characters is allowed. (See gzbuffer above.)
+ The pushed character will be discarded if the stream is repositioned with
+ gzseek() or gzrewind().
+*/
+
+ZEXTERN int ZEXPORT gzflush OF((gzFile file, int flush));
+/*
+ Flushes all pending output into the compressed file. The parameter flush
+ is as in the deflate() function. The return value is the zlib error number
+ (see function gzerror below). gzflush is only permitted when writing.
+
+ If the flush parameter is Z_FINISH, the remaining data is written and the
+ gzip stream is completed in the output. If gzwrite() is called again, a new
+ gzip stream will be started in the output. gzread() is able to read such
+ concatented gzip streams.
+
+ gzflush should be called only when strictly necessary because it will
+ degrade compression if called too often.
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile file,
+ z_off_t offset, int whence));
+
+ Sets the starting position for the next gzread or gzwrite on the given
+ compressed file. The offset represents a number of bytes in the
+ uncompressed data stream. The whence parameter is defined as in lseek(2);
+ the value SEEK_END is not supported.
+
+ If the file is opened for reading, this function is emulated but can be
+ extremely slow. If the file is opened for writing, only forward seeks are
+ supported; gzseek then compresses a sequence of zeroes up to the new
+ starting position.
+
+ gzseek returns the resulting offset location as measured in bytes from
+ the beginning of the uncompressed stream, or -1 in case of error, in
+ particular if the file is opened for writing and the new starting position
+ would be before the current position.
+*/
+
+ZEXTERN int ZEXPORT gzrewind OF((gzFile file));
+/*
+ Rewinds the given file. This function is supported only for reading.
+
+ gzrewind(file) is equivalent to (int)gzseek(file, 0L, SEEK_SET)
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gztell OF((gzFile file));
+
+ Returns the starting position for the next gzread or gzwrite on the given
+ compressed file. This position represents a number of bytes in the
+ uncompressed data stream, and is zero when starting, even if appending or
+ reading a gzip stream from the middle of a file using gzdopen().
+
+ gztell(file) is equivalent to gzseek(file, 0L, SEEK_CUR)
+*/
+
+/*
+ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile file));
+
+ Returns the current offset in the file being read or written. This offset
+ includes the count of bytes that precede the gzip stream, for example when
+ appending or when using gzdopen() for reading. When reading, the offset
+ does not include as yet unused buffered input. This information can be used
+ for a progress indicator. On error, gzoffset() returns -1.
+*/
+
+ZEXTERN int ZEXPORT gzeof OF((gzFile file));
+/*
+ Returns true (1) if the end-of-file indicator has been set while reading,
+ false (0) otherwise. Note that the end-of-file indicator is set only if the
+ read tried to go past the end of the input, but came up short. Therefore,
+ just like feof(), gzeof() may return false even if there is no more data to
+ read, in the event that the last read request was for the exact number of
+ bytes remaining in the input file. This will happen if the input file size
+ is an exact multiple of the buffer size.
+
+ If gzeof() returns true, then the read functions will return no more data,
+ unless the end-of-file indicator is reset by gzclearerr() and the input file
+ has grown since the previous end of file was detected.
+*/
+
+ZEXTERN int ZEXPORT gzdirect OF((gzFile file));
+/*
+ Returns true (1) if file is being copied directly while reading, or false
+ (0) if file is a gzip stream being decompressed.
+
+ If the input file is empty, gzdirect() will return true, since the input
+ does not contain a gzip stream.
+
+ If gzdirect() is used immediately after gzopen() or gzdopen() it will
+ cause buffers to be allocated to allow reading the file to determine if it
+ is a gzip file. Therefore if gzbuffer() is used, it should be called before
+ gzdirect().
+
+ When writing, gzdirect() returns true (1) if transparent writing was
+ requested ("wT" for the gzopen() mode), or false (0) otherwise. (Note:
+ gzdirect() is not needed when writing. Transparent writing must be
+ explicitly requested, so the application already knows the answer. When
+ linking statically, using gzdirect() will include all of the zlib code for
+ gzip file reading and decompression, which may not be desired.)
+*/
+
+ZEXTERN int ZEXPORT gzclose OF((gzFile file));
+/*
+ Flushes all pending output if necessary, closes the compressed file and
+ deallocates the (de)compression state. Note that once file is closed, you
+ cannot call gzerror with file, since its structures have been deallocated.
+ gzclose must not be called more than once on the same file, just as free
+ must not be called more than once on the same allocation.
+
+ gzclose will return Z_STREAM_ERROR if file is not valid, Z_ERRNO on a
+ file operation error, Z_MEM_ERROR if out of memory, Z_BUF_ERROR if the
+ last read ended in the middle of a gzip stream, or Z_OK on success.
+*/
+
+ZEXTERN int ZEXPORT gzclose_r OF((gzFile file));
+ZEXTERN int ZEXPORT gzclose_w OF((gzFile file));
+/*
+ Same as gzclose(), but gzclose_r() is only for use when reading, and
+ gzclose_w() is only for use when writing or appending. The advantage to
+ using these instead of gzclose() is that they avoid linking in zlib
+ compression or decompression code that is not used when only reading or only
+ writing respectively. If gzclose() is used, then both compression and
+ decompression code will be included the application when linking to a static
+ zlib library.
+*/
+
+ZEXTERN const char * ZEXPORT gzerror OF((gzFile file, int *errnum));
+/*
+ Returns the error message for the last error which occurred on the given
+ compressed file. errnum is set to zlib error number. If an error occurred
+ in the file system and not in the compression library, errnum is set to
+ Z_ERRNO and the application may consult errno to get the exact error code.
+
+ The application must not modify the returned string. Future calls to
+ this function may invalidate the previously returned string. If file is
+ closed, then the string previously returned by gzerror will no longer be
+ available.
+
+ gzerror() should be used to distinguish errors from end-of-file for those
+ functions above that do not distinguish those cases in their return values.
+*/
+
+ZEXTERN void ZEXPORT gzclearerr OF((gzFile file));
+/*
+ Clears the error and end-of-file flags for file. This is analogous to the
+ clearerr() function in stdio. This is useful for continuing to read a gzip
+ file that is being written concurrently.
+*/
+
+#endif /* !Z_SOLO */
+
+ /* checksum functions */
+
+/*
+ These functions are not related to compression but are exported
+ anyway because they might be useful in applications using the compression
+ library.
+*/
+
+ZEXTERN uLong ZEXPORT adler32 OF((uLong adler, const Bytef *buf, uInt len));
+/*
+ Update a running Adler-32 checksum with the bytes buf[0..len-1] and
+ return the updated checksum. If buf is Z_NULL, this function returns the
+ required initial value for the checksum.
+
+ An Adler-32 checksum is almost as reliable as a CRC32 but can be computed
+ much faster.
+
+ Usage example:
+
+ uLong adler = adler32(0L, Z_NULL, 0);
+
+ while (read_buffer(buffer, length) != EOF) {
+ adler = adler32(adler, buffer, length);
+ }
+ if (adler != original_adler) error();
+*/
+
+/*
+ZEXTERN uLong ZEXPORT adler32_combine OF((uLong adler1, uLong adler2,
+ z_off_t len2));
+
+ Combine two Adler-32 checksums into one. For two sequences of bytes, seq1
+ and seq2 with lengths len1 and len2, Adler-32 checksums were calculated for
+ each, adler1 and adler2. adler32_combine() returns the Adler-32 checksum of
+ seq1 and seq2 concatenated, requiring only adler1, adler2, and len2. Note
+ that the z_off_t type (like off_t) is a signed integer. If len2 is
+ negative, the result has no meaning or utility.
+*/
+
+ZEXTERN uLong ZEXPORT crc32 OF((uLong crc, const Bytef *buf, uInt len));
+/*
+ Update a running CRC-32 with the bytes buf[0..len-1] and return the
+ updated CRC-32. If buf is Z_NULL, this function returns the required
+ initial value for the crc. Pre- and post-conditioning (one's complement) is
+ performed within this function so it shouldn't be done by the application.
+
+ Usage example:
+
+ uLong crc = crc32(0L, Z_NULL, 0);
+
+ while (read_buffer(buffer, length) != EOF) {
+ crc = crc32(crc, buffer, length);
+ }
+ if (crc != original_crc) error();
+*/
+
+/*
+ZEXTERN uLong ZEXPORT crc32_combine OF((uLong crc1, uLong crc2, z_off_t len2));
+
+ Combine two CRC-32 check values into one. For two sequences of bytes,
+ seq1 and seq2 with lengths len1 and len2, CRC-32 check values were
+ calculated for each, crc1 and crc2. crc32_combine() returns the CRC-32
+ check value of seq1 and seq2 concatenated, requiring only crc1, crc2, and
+ len2.
+*/
+
+
+ /* various hacks, don't look :) */
+
+/* deflateInit and inflateInit are macros to allow checking the zlib version
+ * and the compiler's view of z_stream:
+ */
+ZEXTERN int ZEXPORT deflateInit_ OF((z_streamp strm, int level,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT inflateInit_ OF((z_streamp strm,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT deflateInit2_ OF((z_streamp strm, int level, int method,
+ int windowBits, int memLevel,
+ int strategy, const char *version,
+ int stream_size));
+ZEXTERN int ZEXPORT inflateInit2_ OF((z_streamp strm, int windowBits,
+ const char *version, int stream_size));
+ZEXTERN int ZEXPORT inflateBackInit_ OF((z_streamp strm, int windowBits,
+ unsigned char FAR *window,
+ const char *version,
+ int stream_size));
+#define deflateInit(strm, level) \
+ deflateInit_((strm), (level), ZLIB_VERSION, (int)sizeof(z_stream))
+#define inflateInit(strm) \
+ inflateInit_((strm), ZLIB_VERSION, (int)sizeof(z_stream))
+#define deflateInit2(strm, level, method, windowBits, memLevel, strategy) \
+ deflateInit2_((strm),(level),(method),(windowBits),(memLevel),\
+ (strategy), ZLIB_VERSION, (int)sizeof(z_stream))
+#define inflateInit2(strm, windowBits) \
+ inflateInit2_((strm), (windowBits), ZLIB_VERSION, \
+ (int)sizeof(z_stream))
+#define inflateBackInit(strm, windowBits, window) \
+ inflateBackInit_((strm), (windowBits), (window), \
+ ZLIB_VERSION, (int)sizeof(z_stream))
+
+#ifndef Z_SOLO
+
+/* gzgetc() macro and its supporting function and exposed data structure. Note
+ * that the real internal state is much larger than the exposed structure.
+ * This abbreviated structure exposes just enough for the gzgetc() macro. The
+ * user should not mess with these exposed elements, since their names or
+ * behavior could change in the future, perhaps even capriciously. They can
+ * only be used by the gzgetc() macro. You have been warned.
+ */
+struct gzFile_s {
+ unsigned have;
+ unsigned char *next;
+ z_off64_t pos;
+};
+ZEXTERN int ZEXPORT gzgetc_ OF((gzFile file)); /* backward compatibility */
+#ifdef Z_PREFIX_SET
+# undef z_gzgetc
+# define z_gzgetc(g) \
+ ((g)->have ? ((g)->have--, (g)->pos++, *((g)->next)++) : gzgetc(g))
+#else
+# define gzgetc(g) \
+ ((g)->have ? ((g)->have--, (g)->pos++, *((g)->next)++) : gzgetc(g))
+#endif
+
+/* provide 64-bit offset functions if _LARGEFILE64_SOURCE defined, and/or
+ * change the regular functions to 64 bits if _FILE_OFFSET_BITS is 64 (if
+ * both are true, the application gets the *64 functions, and the regular
+ * functions are changed to 64 bits) -- in case these are set on systems
+ * without large file support, _LFS64_LARGEFILE must also be true
+ */
+#ifdef Z_LARGE64
+ ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *));
+ ZEXTERN z_off64_t ZEXPORT gzseek64 OF((gzFile, z_off64_t, int));
+ ZEXTERN z_off64_t ZEXPORT gztell64 OF((gzFile));
+ ZEXTERN z_off64_t ZEXPORT gzoffset64 OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off64_t));
+ ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off64_t));
+#endif
+
+#if !defined(ZLIB_INTERNAL) && defined(Z_WANT64)
+# ifdef Z_PREFIX_SET
+# define z_gzopen z_gzopen64
+# define z_gzseek z_gzseek64
+# define z_gztell z_gztell64
+# define z_gzoffset z_gzoffset64
+# define z_adler32_combine z_adler32_combine64
+# define z_crc32_combine z_crc32_combine64
+# else
+# define gzopen gzopen64
+# define gzseek gzseek64
+# define gztell gztell64
+# define gzoffset gzoffset64
+# define adler32_combine adler32_combine64
+# define crc32_combine crc32_combine64
+# endif
+# ifndef Z_LARGE64
+ ZEXTERN gzFile ZEXPORT gzopen64 OF((const char *, const char *));
+ ZEXTERN z_off_t ZEXPORT gzseek64 OF((gzFile, z_off_t, int));
+ ZEXTERN z_off_t ZEXPORT gztell64 OF((gzFile));
+ ZEXTERN z_off_t ZEXPORT gzoffset64 OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine64 OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine64 OF((uLong, uLong, z_off_t));
+# endif
+#else
+ ZEXTERN gzFile ZEXPORT gzopen OF((const char *, const char *));
+ ZEXTERN z_off_t ZEXPORT gzseek OF((gzFile, z_off_t, int));
+ ZEXTERN z_off_t ZEXPORT gztell OF((gzFile));
+ ZEXTERN z_off_t ZEXPORT gzoffset OF((gzFile));
+ ZEXTERN uLong ZEXPORT adler32_combine OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine OF((uLong, uLong, z_off_t));
+#endif
+
+#else /* Z_SOLO */
+
+ ZEXTERN uLong ZEXPORT adler32_combine OF((uLong, uLong, z_off_t));
+ ZEXTERN uLong ZEXPORT crc32_combine OF((uLong, uLong, z_off_t));
+
+#endif /* !Z_SOLO */
+
+/* hack for buggy compilers */
+#if !defined(ZUTIL_H) && !defined(NO_DUMMY_DECL)
+ struct internal_state {int dummy;};
+#endif
+
+/* undocumented functions */
+ZEXTERN const char * ZEXPORT zError OF((int));
+ZEXTERN int ZEXPORT inflateSyncPoint OF((z_streamp));
+ZEXTERN const z_crc_t FAR * ZEXPORT get_crc_table OF((void));
+ZEXTERN int ZEXPORT inflateUndermine OF((z_streamp, int));
+ZEXTERN int ZEXPORT inflateResetKeep OF((z_streamp));
+ZEXTERN int ZEXPORT deflateResetKeep OF((z_streamp));
+#if defined(_WIN32) && !defined(Z_SOLO)
+ZEXTERN gzFile ZEXPORT gzopen_w OF((const wchar_t *path,
+ const char *mode));
+#endif
+#if defined(STDC) || defined(Z_HAVE_STDARG_H)
+# ifndef Z_SOLO
+ZEXTERN int ZEXPORTVA gzvprintf Z_ARG((gzFile file,
+ const char *format,
+ va_list va));
+# endif
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+
+#endif /* ZLIB_H */
diff --git a/privatemodules/nc4/lib/libhdf5.a b/privatemodules/nc4/lib/libhdf5.a
new file mode 100644
index 0000000000000000000000000000000000000000..b2a59016fa92fa3d6f0e43c17f26f3c51fda6bec
Binary files /dev/null and b/privatemodules/nc4/lib/libhdf5.a differ
diff --git a/privatemodules/nc4/lib/libhdf5.la b/privatemodules/nc4/lib/libhdf5.la
new file mode 100755
index 0000000000000000000000000000000000000000..030a7508f01412440eb0bd77cf26750e02901545
--- /dev/null
+++ b/privatemodules/nc4/lib/libhdf5.la
@@ -0,0 +1,41 @@
+# libhdf5.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4.2
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libhdf5.so.8'
+
+# Names of this library.
+library_names='libhdf5.so.8.0.2 libhdf5.so.8 libhdf5.so'
+
+# The name of the static archive.
+old_library='libhdf5.a'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -L/home/erikvs/privatemodules/nc4/lib -lz -ldl -lm'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libhdf5.
+current=8
+age=0
+revision=2
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/erikvs/privatemodules/nc4/lib'
diff --git a/privatemodules/nc4/lib/libhdf5.settings b/privatemodules/nc4/lib/libhdf5.settings
new file mode 100644
index 0000000000000000000000000000000000000000..5b1e958abe3aac71137fb9d6adcca19c9a051945
--- /dev/null
+++ b/privatemodules/nc4/lib/libhdf5.settings
@@ -0,0 +1,61 @@
+ SUMMARY OF THE HDF5 CONFIGURATION
+ =================================
+
+General Information:
+-------------------
+ HDF5 Version: 1.8.13
+ Configured on: Tue Nov 28 10:29:11 CET 2017
+ Configured by: erikvs@int2.bullx
+ Configure mode: production
+ Host system: x86_64-unknown-linux-gnu
+ Uname information: Linux int2.bullx 3.10.0-693.5.2.el7.x86_64 #1 SMP Fri Oct 13 10:46:25 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux
+ Byte sex: little-endian
+ Libraries: static, shared
+ Installation point: /home/erikvs/privatemodules/nc4
+
+Compiling Options:
+------------------
+ Compilation Mode: production
+ C Compiler: /hpc/sw/modules/wrappers/surfsara/gcc ( gcc (GCC) 5.2.0)
+ CFLAGS: -fPIC
+ H5_CFLAGS: -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O -fomit-frame-pointer -finline-functions
+ AM_CFLAGS:
+ CPPFLAGS:
+ H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L -DNDEBUG -UH5_DEBUG_API
+ AM_CPPFLAGS: -I/home/erikvs/privatemodules/nc4/include -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE
+ Shared C Library: yes
+ Static C Library: yes
+ Statically Linked Executables: no
+ LDFLAGS:
+ H5_LDFLAGS:
+ AM_LDFLAGS: -L/home/erikvs/privatemodules/nc4/lib
+ Extra libraries: -lz -ldl -lm
+ Archiver: ar
+ Ranlib: ranlib
+ Debugged Packages:
+ API Tracing: no
+
+Languages:
+----------
+ Fortran: no
+
+ C++: no
+
+Features:
+---------
+ Parallel HDF5: no
+ High Level library: yes
+ Threadsafety: no
+ Default API Mapping: v18
+ With Deprecated Public Symbols: yes
+ I/O filters (external): deflate(zlib)
+ I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
+ MPE: no
+ Direct VFD: no
+ dmalloc: no
+Clear file buffers before write: yes
+ Using memory checker: no
+ Function Stack Tracing: no
+ Strict File Format Checks: no
+ Optimization Instrumentation: no
+ Large File Support (LFS): yes
diff --git a/privatemodules/nc4/lib/libhdf5.so b/privatemodules/nc4/lib/libhdf5.so
new file mode 100755
index 0000000000000000000000000000000000000000..b4dc94dc11882000e633d833631b7ab063367635
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diff --git a/privatemodules/nc4/lib/libhdf5.so.8 b/privatemodules/nc4/lib/libhdf5.so.8
new file mode 100755
index 0000000000000000000000000000000000000000..b4dc94dc11882000e633d833631b7ab063367635
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diff --git a/privatemodules/nc4/lib/libhdf5.so.8.0.2 b/privatemodules/nc4/lib/libhdf5.so.8.0.2
new file mode 100755
index 0000000000000000000000000000000000000000..b4dc94dc11882000e633d833631b7ab063367635
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diff --git a/privatemodules/nc4/lib/libhdf5_hl.a b/privatemodules/nc4/lib/libhdf5_hl.a
new file mode 100644
index 0000000000000000000000000000000000000000..c567ee6342d76cf0ff845a9e92f78a31e7e4a974
Binary files /dev/null and b/privatemodules/nc4/lib/libhdf5_hl.a differ
diff --git a/privatemodules/nc4/lib/libhdf5_hl.la b/privatemodules/nc4/lib/libhdf5_hl.la
new file mode 100755
index 0000000000000000000000000000000000000000..60583e3969b5dd48b72f1d8e143ac5429ba2275d
--- /dev/null
+++ b/privatemodules/nc4/lib/libhdf5_hl.la
@@ -0,0 +1,41 @@
+# libhdf5_hl.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4.2
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libhdf5_hl.so.8'
+
+# Names of this library.
+library_names='libhdf5_hl.so.8.0.2 libhdf5_hl.so.8 libhdf5_hl.so'
+
+# The name of the static archive.
+old_library='libhdf5_hl.a'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -L/home/erikvs/privatemodules/nc4/lib /home/erikvs/privatemodules/nc4/lib/libhdf5.la -lz -ldl -lm'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libhdf5_hl.
+current=8
+age=0
+revision=2
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/erikvs/privatemodules/nc4/lib'
diff --git a/privatemodules/nc4/lib/libhdf5_hl.so b/privatemodules/nc4/lib/libhdf5_hl.so
new file mode 100755
index 0000000000000000000000000000000000000000..f31080c5ef6f477d349a77b1121c9a1e59b7d2da
Binary files /dev/null and b/privatemodules/nc4/lib/libhdf5_hl.so differ
diff --git a/privatemodules/nc4/lib/libhdf5_hl.so.8 b/privatemodules/nc4/lib/libhdf5_hl.so.8
new file mode 100755
index 0000000000000000000000000000000000000000..f31080c5ef6f477d349a77b1121c9a1e59b7d2da
Binary files /dev/null and b/privatemodules/nc4/lib/libhdf5_hl.so.8 differ
diff --git a/privatemodules/nc4/lib/libhdf5_hl.so.8.0.2 b/privatemodules/nc4/lib/libhdf5_hl.so.8.0.2
new file mode 100755
index 0000000000000000000000000000000000000000..f31080c5ef6f477d349a77b1121c9a1e59b7d2da
Binary files /dev/null and b/privatemodules/nc4/lib/libhdf5_hl.so.8.0.2 differ
diff --git a/privatemodules/nc4/lib/libnetcdf.a b/privatemodules/nc4/lib/libnetcdf.a
new file mode 100644
index 0000000000000000000000000000000000000000..b28c6a85e1e659d33282083baef131fcccd0e0f1
Binary files /dev/null and b/privatemodules/nc4/lib/libnetcdf.a differ
diff --git a/privatemodules/nc4/lib/libnetcdf.la b/privatemodules/nc4/lib/libnetcdf.la
new file mode 100755
index 0000000000000000000000000000000000000000..639041eef98404d6f59b9acfa65d592abbb0cc6a
--- /dev/null
+++ b/privatemodules/nc4/lib/libnetcdf.la
@@ -0,0 +1,41 @@
+# libnetcdf.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4.6
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libnetcdf.so.11'
+
+# Names of this library.
+library_names='libnetcdf.so.11.0.4 libnetcdf.so.11 libnetcdf.so'
+
+# The name of the static archive.
+old_library='libnetcdf.a'
+
+# Linker flags that cannot go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -L/home/erikvs/privatemodules/nc4/lib /home/erikvs/privatemodules/nc4/lib/libhdf5_hl.la /home/erikvs/privatemodules/nc4/lib/libhdf5.la -ldl -lm -lz -lcurl'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libnetcdf.
+current=11
+age=0
+revision=4
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/erikvs/privatemodules/nc4/lib'
diff --git a/privatemodules/nc4/lib/libnetcdf.settings b/privatemodules/nc4/lib/libnetcdf.settings
new file mode 100644
index 0000000000000000000000000000000000000000..7503b3b967a5ed637900d30ca1d4ea9f648513e1
--- /dev/null
+++ b/privatemodules/nc4/lib/libnetcdf.settings
@@ -0,0 +1,35 @@
+# NetCDF C Configuration Summary
+==============================
+
+# General
+-------
+NetCDF Version: 4.4.1.1
+Configured On: Tue Nov 28 10:53:10 CET 2017
+Host System: x86_64-unknown-linux-gnu
+Build Directory: /scratch/shared/erikvs/test/netcdf-4.4.1.1
+Install Prefix: /home/erikvs/privatemodules/nc4
+
+# Compiling Options
+-----------------
+C Compiler: /hpc/sw/modules/wrappers/surfsara/gcc
+CFLAGS: -fPIC
+CPPFLAGS: -I/home/erikvs/privatemodules/nc4/include
+LDFLAGS: -L/home/erikvs/privatemodules/nc4/lib
+AM_CFLAGS:
+AM_CPPFLAGS:
+AM_LDFLAGS:
+Shared Library: yes
+Static Library: yes
+Extra libraries: -lhdf5_hl -lhdf5 -ldl -lm -lz -lcurl
+
+# Features
+--------
+NetCDF-2 API: yes
+HDF4 Support: no
+NetCDF-4 API: yes
+NC-4 Parallel Support: no
+PNetCDF Support: no
+DAP Support: yes
+Diskless Support: yes
+MMap Support: no
+JNA Support: no
diff --git a/privatemodules/nc4/lib/libnetcdf.so b/privatemodules/nc4/lib/libnetcdf.so
new file mode 100755
index 0000000000000000000000000000000000000000..0ab6f2969394e155fe21017359674dc39b9f0eb9
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diff --git a/privatemodules/nc4/lib/libnetcdf.so.11 b/privatemodules/nc4/lib/libnetcdf.so.11
new file mode 100755
index 0000000000000000000000000000000000000000..0ab6f2969394e155fe21017359674dc39b9f0eb9
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diff --git a/privatemodules/nc4/lib/libnetcdf.so.11.0.4 b/privatemodules/nc4/lib/libnetcdf.so.11.0.4
new file mode 100755
index 0000000000000000000000000000000000000000..0ab6f2969394e155fe21017359674dc39b9f0eb9
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diff --git a/privatemodules/nc4/lib/libnetcdff.a b/privatemodules/nc4/lib/libnetcdff.a
new file mode 100644
index 0000000000000000000000000000000000000000..cd29dde5ed4ff614f094abaa9066a4c12d3ade5b
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diff --git a/privatemodules/nc4/lib/libnetcdff.la b/privatemodules/nc4/lib/libnetcdff.la
new file mode 100755
index 0000000000000000000000000000000000000000..096071bddb69845b09919ce9ec8409874dca06b7
--- /dev/null
+++ b/privatemodules/nc4/lib/libnetcdff.la
@@ -0,0 +1,41 @@
+# libnetcdff.la - a libtool library file
+# Generated by libtool (GNU libtool) 2.4.2 Debian-2.4.2-1.7ubuntu1
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='libnetcdff.so.6'
+
+# Names of this library.
+library_names='libnetcdff.so.6.1.1 libnetcdff.so.6 libnetcdff.so'
+
+# The name of the static archive.
+old_library='libnetcdff.a'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags=''
+
+# Libraries that this one depends upon.
+dependency_libs=' -L/home/erikvs/privatemodules/nc4/lib /home/erikvs/privatemodules/nc4/lib/libnetcdf.la /home/erikvs/privatemodules/nc4/lib/libhdf5_hl.la /home/erikvs/privatemodules/nc4/lib/libhdf5.la -ldl -lm -lz -lcurl'
+
+# Names of additional weak libraries provided by this library
+weak_library_names=''
+
+# Version information for libnetcdff.
+current=7
+age=1
+revision=1
+
+# Is this an already installed library?
+installed=yes
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=no
+
+# Files to dlopen/dlpreopen
+dlopen=''
+dlpreopen=''
+
+# Directory that this library needs to be installed in:
+libdir='/home/erikvs/privatemodules/nc4/lib'
diff --git a/privatemodules/nc4/lib/libnetcdff.so b/privatemodules/nc4/lib/libnetcdff.so
new file mode 100755
index 0000000000000000000000000000000000000000..4e08944827411d51aff0d3c3388012732216b35c
Binary files /dev/null and b/privatemodules/nc4/lib/libnetcdff.so differ
diff --git a/privatemodules/nc4/lib/libnetcdff.so.6 b/privatemodules/nc4/lib/libnetcdff.so.6
new file mode 100755
index 0000000000000000000000000000000000000000..4e08944827411d51aff0d3c3388012732216b35c
Binary files /dev/null and b/privatemodules/nc4/lib/libnetcdff.so.6 differ
diff --git a/privatemodules/nc4/lib/libnetcdff.so.6.1.1 b/privatemodules/nc4/lib/libnetcdff.so.6.1.1
new file mode 100755
index 0000000000000000000000000000000000000000..4e08944827411d51aff0d3c3388012732216b35c
Binary files /dev/null and b/privatemodules/nc4/lib/libnetcdff.so.6.1.1 differ
diff --git a/privatemodules/nc4/lib/libz.a b/privatemodules/nc4/lib/libz.a
new file mode 100644
index 0000000000000000000000000000000000000000..09273da40c12aac1942ae6331db29f66b4d919c5
Binary files /dev/null and b/privatemodules/nc4/lib/libz.a differ
diff --git a/privatemodules/nc4/lib/libz.so b/privatemodules/nc4/lib/libz.so
new file mode 100755
index 0000000000000000000000000000000000000000..009096bec3b2144e243e00946e752f5f5258c3c8
Binary files /dev/null and b/privatemodules/nc4/lib/libz.so differ
diff --git a/privatemodules/nc4/lib/libz.so.1 b/privatemodules/nc4/lib/libz.so.1
new file mode 100755
index 0000000000000000000000000000000000000000..009096bec3b2144e243e00946e752f5f5258c3c8
Binary files /dev/null and b/privatemodules/nc4/lib/libz.so.1 differ
diff --git a/privatemodules/nc4/lib/libz.so.1.2.8 b/privatemodules/nc4/lib/libz.so.1.2.8
new file mode 100755
index 0000000000000000000000000000000000000000..009096bec3b2144e243e00946e752f5f5258c3c8
Binary files /dev/null and b/privatemodules/nc4/lib/libz.so.1.2.8 differ
diff --git a/privatemodules/nc4/lib/pkgconfig/netcdf-fortran.pc b/privatemodules/nc4/lib/pkgconfig/netcdf-fortran.pc
new file mode 100644
index 0000000000000000000000000000000000000000..40fb3531d5d17bd426d3326a9636ba894637a9f1
--- /dev/null
+++ b/privatemodules/nc4/lib/pkgconfig/netcdf-fortran.pc
@@ -0,0 +1,15 @@
+prefix=/home/erikvs/privatemodules/nc4
+exec_prefix=${prefix}
+libdir=${exec_prefix}/lib
+includedir=${prefix}/include
+ccompiler=gcc
+fcompiler=gfortran
+
+Name: netcdf-fortran
+Description: NetCDF Client Library for Fortran
+URL: http://www.unidata.ucar.edu/netcdf
+Version: 4.4.4
+Requires.private: netcdf > 4.1.1
+Libs: -L${libdir} -lnetcdff
+Libs.private: -L${libdir} -lnetcdff -lnetcdf
+Cflags: -I${includedir}
diff --git a/privatemodules/nc4/lib/pkgconfig/netcdf.pc b/privatemodules/nc4/lib/pkgconfig/netcdf.pc
new file mode 100644
index 0000000000000000000000000000000000000000..fb053c79c12da400bba8328dcd3b1af30416aa0d
--- /dev/null
+++ b/privatemodules/nc4/lib/pkgconfig/netcdf.pc
@@ -0,0 +1,13 @@
+prefix=/home/erikvs/privatemodules/nc4
+exec_prefix=${prefix}
+libdir=${exec_prefix}/lib
+includedir=${prefix}/include
+ccompiler=gcc
+
+Name: netcdf
+Description: NetCDF Client Library for C
+URL: http://www.unidata.ucar.edu/netcdf
+Version: 4.4.1.1
+Libs: -L${libdir} -lnetcdf
+Cflags: -I${includedir}
+
diff --git a/privatemodules/nc4/lib/pkgconfig/zlib.pc b/privatemodules/nc4/lib/pkgconfig/zlib.pc
new file mode 100644
index 0000000000000000000000000000000000000000..a039af2f6bff0a13117510ed6b712ef79ba9910e
--- /dev/null
+++ b/privatemodules/nc4/lib/pkgconfig/zlib.pc
@@ -0,0 +1,13 @@
+prefix=/home/erikvs/privatemodules/nc4
+exec_prefix=${prefix}
+libdir=${exec_prefix}/lib
+sharedlibdir=${libdir}
+includedir=${prefix}/include
+
+Name: zlib
+Description: zlib compression library
+Version: 1.2.8
+
+Requires:
+Libs: -L${libdir} -L${sharedlibdir} -lz
+Cflags: -I${includedir}
diff --git a/privatemodules/nc4/share/hdf5_examples/README b/privatemodules/nc4/share/hdf5_examples/README
new file mode 100644
index 0000000000000000000000000000000000000000..0550b15619829df628a3410449cf51f12d85af05
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/README
@@ -0,0 +1,17 @@
+ HDF5 Examples
+
+This directory contains example programs for the installed APIs and scripts to
+compile and run them. Examples in the c and hl/c subdirectories are always
+installed, and those in fortan, hl/fortran, c++ and hl/c++ will be installed
+when fortran or c++ are enabled.
+
+Running the run-all-ex.sh script in this directory will run the scripts and in
+turn the examples in all the subdirectories where examples are installed. The
+scripts can also be run individually. The appropriate compile scripts in the
+bin directory for this install will be used by default to compile and link the
+example programs. Note that h5redeploy must be run if these binaries are
+copied or extracted in a directory other than the one where they were initially
+installed. Compile scripts from other locations can be used by setting an
+environment variable prefix to the path of the directory containing the bin
+directory with the compile scripts h5cc, h5fc, etc. For example, export
+prefix=/usr/local/hdf5 to use h5cc, h5fc, etc. in /usr/local/hdf5/bin.
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_attribute.c b/privatemodules/nc4/share/hdf5_examples/c/h5_attribute.c
new file mode 100644
index 0000000000000000000000000000000000000000..0ea015322d762ca47d3eb5d4e2cb9179b8890d4e
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_attribute.c
@@ -0,0 +1,295 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This program illustrates the usage of the H5A Interface functions.
+ * It creates and writes a dataset, and then creates and writes array,
+ * scalar, and string attributes of the dataset.
+ * Program reopens the file, attaches to the scalar attribute using
+ * attribute name and reads and displays its value. Then index of the
+ * third attribute is used to read and display attribute values.
+ * The H5Aiterate function is used to iterate through the dataset attributes,
+ * and display their names. The function is also reads and displays the values
+ * of the array attribute.
+ */
+
+#include <stdlib.h>
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "Attributes.h5"
+
+#define RANK 1 /* Rank and size of the dataset */
+#define SIZE 7
+
+#define ARANK 2 /* Rank and dimension sizes of the first dataset attribute */
+#define ADIM1 2
+#define ADIM2 3
+#define ANAME "Float attribute" /* Name of the array attribute */
+#define ANAMES "Character attribute" /* Name of the string attribute */
+
+static herr_t attr_info(hid_t loc_id, const char *name, const H5A_info_t *ainfo, void *opdata);
+ /* Operator function */
+
+int
+main (void)
+{
+
+ hid_t file, dataset; /* File and dataset identifiers */
+
+ hid_t fid; /* Dataspace identifier */
+ hid_t attr1, attr2, attr3; /* Attribute identifiers */
+ hid_t attr;
+ hid_t aid1, aid2, aid3; /* Attribute dataspace identifiers */
+ hid_t atype, atype_mem; /* Attribute type */
+ H5T_class_t type_class;
+
+ hsize_t fdim[] = {SIZE};
+ hsize_t adim[] = {ADIM1, ADIM2}; /* Dimensions of the first attribute */
+
+ float matrix[ADIM1][ADIM2]; /* Attribute data */
+
+ herr_t ret; /* Return value */
+ H5O_info_t oinfo; /* Object info */
+ unsigned i, j; /* Counters */
+ char string_out[80]; /* Buffer to read string attribute back */
+ int point_out; /* Buffer to read scalar attribute back */
+
+ /*
+ * Data initialization.
+ */
+ int vector[] = {1, 2, 3, 4, 5, 6, 7}; /* Dataset data */
+ int point = 1; /* Value of the scalar attribute */
+ char string[] = "ABCD"; /* Value of the string attribute */
+
+
+ for (i=0; i < ADIM1; i++) { /* Values of the array attribute */
+ for (j=0; j < ADIM2; j++)
+ matrix[i][j] = -1.;
+ }
+
+ /*
+ * Create a file.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create the dataspace for the dataset in the file.
+ */
+ fid = H5Screate(H5S_SIMPLE);
+ ret = H5Sset_extent_simple(fid, RANK, fdim, NULL);
+
+ /*
+ * Create the dataset in the file.
+ */
+ dataset = H5Dcreate2(file, "Dataset", H5T_NATIVE_INT, fid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write data to the dataset.
+ */
+ ret = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL , H5S_ALL, H5P_DEFAULT, vector);
+
+ /*
+ * Create dataspace for the first attribute.
+ */
+ aid1 = H5Screate(H5S_SIMPLE);
+ ret = H5Sset_extent_simple(aid1, ARANK, adim, NULL);
+
+ /*
+ * Create array attribute.
+ */
+ attr1 = H5Acreate2(dataset, ANAME, H5T_NATIVE_FLOAT, aid1, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write array attribute.
+ */
+ ret = H5Awrite(attr1, H5T_NATIVE_FLOAT, matrix);
+
+ /*
+ * Create scalar attribute.
+ */
+ aid2 = H5Screate(H5S_SCALAR);
+ attr2 = H5Acreate2(dataset, "Integer attribute", H5T_NATIVE_INT, aid2,
+ H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write scalar attribute.
+ */
+ ret = H5Awrite(attr2, H5T_NATIVE_INT, &point);
+
+ /*
+ * Create string attribute.
+ */
+ aid3 = H5Screate(H5S_SCALAR);
+ atype = H5Tcopy(H5T_C_S1);
+ H5Tset_size(atype, 5);
+ H5Tset_strpad(atype,H5T_STR_NULLTERM);
+ attr3 = H5Acreate2(dataset, ANAMES, atype, aid3, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write string attribute.
+ */
+ ret = H5Awrite(attr3, atype, string);
+
+ /*
+ * Close attribute and file dataspaces, and datatype.
+ */
+ ret = H5Sclose(aid1);
+ ret = H5Sclose(aid2);
+ ret = H5Sclose(aid3);
+ ret = H5Sclose(fid);
+ ret = H5Tclose(atype);
+
+ /*
+ * Close the attributes.
+ */
+ ret = H5Aclose(attr1);
+ ret = H5Aclose(attr2);
+ ret = H5Aclose(attr3);
+
+ /*
+ * Close the dataset.
+ */
+ ret = H5Dclose(dataset);
+
+ /*
+ * Close the file.
+ */
+ ret = H5Fclose(file);
+
+ /*
+ * Reopen the file.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /*
+ * Open the dataset.
+ */
+ dataset = H5Dopen2(file, "Dataset", H5P_DEFAULT);
+
+ /*
+ * Attach to the scalar attribute using attribute name, then read and
+ * display its value.
+ */
+ attr = H5Aopen(dataset, "Integer attribute", H5P_DEFAULT);
+ ret = H5Aread(attr, H5T_NATIVE_INT, &point_out);
+ printf("The value of the attribute \"Integer attribute\" is %d \n", point_out);
+ ret = H5Aclose(attr);
+
+ /*
+ * Find string attribute by iterating through all attributes
+ */
+ ret = H5Oget_info(dataset, &oinfo);
+ for(i = 0; i < (unsigned)oinfo.num_attrs; i++) {
+ attr = H5Aopen_by_idx(dataset, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, (hsize_t)i, H5P_DEFAULT, H5P_DEFAULT);
+ atype = H5Aget_type(attr);
+ type_class = H5Tget_class(atype);
+ if (type_class == H5T_STRING) {
+ atype_mem = H5Tget_native_type(atype, H5T_DIR_ASCEND);
+ ret = H5Aread(attr, atype_mem, string_out);
+ printf("Found string attribute; its index is %d , value = %s \n", i, string_out);
+ ret = H5Tclose(atype_mem);
+ }
+ ret = H5Aclose(attr);
+ ret = H5Tclose(atype);
+ }
+
+ /*
+ * Get attribute info using iteration function.
+ */
+ ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, NULL, attr_info, NULL);
+
+ /*
+ * Close the dataset and the file.
+ */
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ return 0;
+}
+
+/*
+ * Operator function.
+ */
+static herr_t
+attr_info(hid_t loc_id, const char *name, const H5A_info_t *ainfo, void *opdata)
+{
+ hid_t attr, atype, aspace; /* Attribute, datatype and dataspace identifiers */
+ int rank;
+ hsize_t sdim[64];
+ herr_t ret;
+ int i;
+ size_t npoints; /* Number of elements in the array attribute. */
+ float *float_array; /* Pointer to the array attribute. */
+
+ /* avoid warnings */
+ opdata = opdata;
+
+ /*
+ * Open the attribute using its name.
+ */
+ attr = H5Aopen(loc_id, name, H5P_DEFAULT);
+
+ /*
+ * Display attribute name.
+ */
+ printf("\nName : %s\n", name);
+
+ /*
+ * Get attribute datatype, dataspace, rank, and dimensions.
+ */
+ atype = H5Aget_type(attr);
+ aspace = H5Aget_space(attr);
+ rank = H5Sget_simple_extent_ndims(aspace);
+ ret = H5Sget_simple_extent_dims(aspace, sdim, NULL);
+
+ /*
+ * Display rank and dimension sizes for the array attribute.
+ */
+
+ if(rank > 0) {
+ printf("Rank : %d \n", rank);
+ printf("Dimension sizes : ");
+ for (i=0; i< rank; i++)
+ printf("%d ", (int)sdim[i]);
+ printf("\n");
+ }
+
+ /*
+ * Read array attribute and display its type and values.
+ */
+
+ if (H5T_FLOAT == H5Tget_class(atype)) {
+ printf("Type : FLOAT \n");
+ npoints = H5Sget_simple_extent_npoints(aspace);
+ float_array = (float *)malloc(sizeof(float)*(int)npoints);
+ ret = H5Aread(attr, atype, float_array);
+ printf("Values : ");
+ for( i = 0; i < (int)npoints; i++)
+ printf("%f ", float_array[i]);
+ printf("\n");
+ free(float_array);
+ }
+
+ /*
+ * Release all identifiers.
+ */
+ H5Tclose(atype);
+ H5Sclose(aspace);
+ H5Aclose(attr);
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_chunk_read.c b/privatemodules/nc4/share/hdf5_examples/c/h5_chunk_read.c
new file mode 100644
index 0000000000000000000000000000000000000000..98b0bb495d21473a4e0a7c1f2f09eeee92032aea
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_chunk_read.c
@@ -0,0 +1,214 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example shows how to read data from a chunked dataset.
+ * We will read from the file created by h5_extend_write.c
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "SDSextendible.h5"
+#define DATASETNAME "ExtendibleArray"
+#define RANK 2
+#define RANKC 1
+#define NX 10
+#define NY 5
+
+int
+main (void)
+{
+ hid_t file; /* handles */
+ hid_t dataset;
+ hid_t filespace;
+ hid_t memspace;
+ hid_t cparms;
+ hsize_t dims[2]; /* dataset and chunk dimensions*/
+ hsize_t chunk_dims[2];
+ hsize_t col_dims[1];
+ hsize_t count[2];
+ hsize_t offset[2];
+
+ herr_t status, status_n;
+
+ int data_out[NX][NY]; /* buffer for dataset to be read */
+ int chunk_out[2][5]; /* buffer for chunk to be read */
+ int column[10]; /* buffer for column to be read */
+ int rank, rank_chunk;
+ int i, j;
+
+
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT);
+
+ /*
+ * Get dataset rank and dimension.
+ */
+
+ filespace = H5Dget_space(dataset); /* Get filespace handle first. */
+ rank = H5Sget_simple_extent_ndims(filespace);
+ status_n = H5Sget_simple_extent_dims(filespace, dims, NULL);
+ printf("dataset rank %d, dimensions %lu x %lu\n",
+ rank, (unsigned long)(dims[0]), (unsigned long)(dims[1]));
+
+ /*
+ * Define the memory space to read dataset.
+ */
+ memspace = H5Screate_simple(RANK,dims,NULL);
+
+ /*
+ * Read dataset back and display.
+ */
+ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, data_out);
+ printf("\n");
+ printf("Dataset: \n");
+ for (j = 0; j < dims[0]; j++) {
+ for (i = 0; i < dims[1]; i++) printf("%d ", data_out[j][i]);
+ printf("\n");
+ }
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose(memspace);
+
+ /*
+ * dataset rank 2, dimensions 10 x 5
+ * chunk rank 2, dimensions 2 x 5
+
+ * Dataset:
+ * 1 1 1 3 3
+ * 1 1 1 3 3
+ * 1 1 1 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ */
+
+ /*
+ * Read the third column from the dataset.
+ * First define memory dataspace, then define hyperslab
+ * and read it into column array.
+ */
+ col_dims[0] = 10;
+ memspace = H5Screate_simple(RANKC, col_dims, NULL);
+
+ /*
+ * Define the column (hyperslab) to read.
+ */
+ offset[0] = 0;
+ offset[1] = 2;
+ count[0] = 10;
+ count[1] = 1;
+ status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
+ count, NULL);
+ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, column);
+ printf("\n");
+ printf("Third column: \n");
+ for (i = 0; i < 10; i++) {
+ printf("%d \n", column[i]);
+ }
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose(memspace);
+
+ /*
+ * Third column:
+ * 1
+ * 1
+ * 1
+ * 0
+ * 0
+ * 0
+ * 0
+ * 0
+ * 0
+ * 0
+ */
+
+ /*
+ * Get creation properties list.
+ */
+ cparms = H5Dget_create_plist(dataset); /* Get properties handle first. */
+
+ if (H5D_CHUNKED == H5Pget_layout(cparms)) {
+
+ /*
+ * Get chunking information: rank and dimensions
+ */
+ rank_chunk = H5Pget_chunk(cparms, 2, chunk_dims);
+ printf("chunk rank %d, dimensions %lu x %lu\n", rank_chunk,
+ (unsigned long)(chunk_dims[0]), (unsigned long)(chunk_dims[1]));
+
+ /*
+ * Define the memory space to read a chunk.
+ */
+ memspace = H5Screate_simple(rank_chunk,chunk_dims,NULL);
+
+ /*
+ * Define chunk in the file (hyperslab) to read.
+ */
+ offset[0] = 2;
+ offset[1] = 0;
+ count[0] = chunk_dims[0];
+ count[1] = chunk_dims[1];
+ status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
+ count, NULL);
+
+ /*
+ * Read chunk back and display.
+ */
+ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, chunk_out);
+ printf("\n");
+ printf("Chunk: \n");
+ for (j = 0; j < chunk_dims[0]; j++) {
+ for (i = 0; i < chunk_dims[1]; i++) printf("%d ", chunk_out[j][i]);
+ printf("\n");
+ }
+ /*
+ * Chunk:
+ * 1 1 1 0 0
+ * 2 0 0 0 0
+ */
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose(memspace);
+ }
+
+ /*
+ * Close/release resources.
+ */
+ H5Pclose(cparms);
+ H5Dclose(dataset);
+ H5Sclose(filespace);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_cmprss.c b/privatemodules/nc4/share/hdf5_examples/c/h5_cmprss.c
new file mode 100644
index 0000000000000000000000000000000000000000..4a2f9828081a66fb7405cc8fd4f953f31c7009e3
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_cmprss.c
@@ -0,0 +1,125 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to create a compressed dataset.
+ * It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+
+#define FILE "cmprss.h5"
+#define RANK 2
+#define DIM0 100
+#define DIM1 20
+
+int main () {
+
+ hid_t file_id, dataset_id, dataspace_id; /* identifiers */
+ hid_t plist_id;
+
+ size_t nelmts;
+ unsigned flags, filter_info;
+ H5Z_filter_t filter_type;
+
+ herr_t status;
+ hsize_t dims[2];
+ hsize_t cdims[2];
+
+ int idx;
+ int i,j, numfilt;
+ int buf[DIM0][DIM1];
+ int rbuf [DIM0][DIM1];
+
+ /* Uncomment these variables to use SZIP compression
+ unsigned szip_options_mask;
+ unsigned szip_pixels_per_block;
+ */
+
+ /* Create a file. */
+ file_id = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+
+ /* Create dataset "Compressed Data" in the group using absolute name. */
+ dims[0] = DIM0;
+ dims[1] = DIM1;
+ dataspace_id = H5Screate_simple (RANK, dims, NULL);
+
+ plist_id = H5Pcreate (H5P_DATASET_CREATE);
+
+ /* Dataset must be chunked for compression */
+ cdims[0] = 20;
+ cdims[1] = 20;
+ status = H5Pset_chunk (plist_id, 2, cdims);
+
+ /* Set ZLIB / DEFLATE Compression using compression level 6.
+ * To use SZIP Compression comment out these lines.
+ */
+ status = H5Pset_deflate (plist_id, 6);
+
+ /* Uncomment these lines to set SZIP Compression
+ szip_options_mask = H5_SZIP_NN_OPTION_MASK;
+ szip_pixels_per_block = 16;
+ status = H5Pset_szip (plist_id, szip_options_mask, szip_pixels_per_block);
+ */
+
+ dataset_id = H5Dcreate2 (file_id, "Compressed_Data", H5T_STD_I32BE,
+ dataspace_id, H5P_DEFAULT, plist_id, H5P_DEFAULT);
+
+ for (i = 0; i< DIM0; i++)
+ for (j=0; j<DIM1; j++)
+ buf[i][j] = i+j;
+
+ status = H5Dwrite (dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf);
+
+ status = H5Sclose (dataspace_id);
+ status = H5Dclose (dataset_id);
+ status = H5Pclose (plist_id);
+ status = H5Fclose (file_id);
+
+ /* Now reopen the file and dataset in the file. */
+ file_id = H5Fopen (FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+ dataset_id = H5Dopen2 (file_id, "Compressed_Data", H5P_DEFAULT);
+
+ /* Retrieve filter information. */
+ plist_id = H5Dget_create_plist (dataset_id);
+
+ numfilt = H5Pget_nfilters (plist_id);
+ printf ("Number of filters associated with dataset: %i\n", numfilt);
+
+ for (i=0; i<numfilt; i++) {
+ nelmts = 0;
+ filter_type = H5Pget_filter2 (plist_id, 0, &flags, &nelmts, NULL, 0, NULL,
+ &filter_info);
+ printf ("Filter Type: ");
+ switch (filter_type) {
+ case H5Z_FILTER_DEFLATE:
+ printf ("H5Z_FILTER_DEFLATE\n");
+ break;
+ case H5Z_FILTER_SZIP:
+ printf ("H5Z_FILTER_SZIP\n");
+ break;
+ default:
+ printf ("Other filter type included.\n");
+ }
+ }
+
+ status = H5Dread (dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, rbuf);
+
+ status = H5Dclose (dataset_id);
+ status = H5Pclose (plist_id);
+ status = H5Fclose (file_id);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_compound.c b/privatemodules/nc4/share/hdf5_examples/c/h5_compound.c
new file mode 100644
index 0000000000000000000000000000000000000000..3fca2a5acdf92553beaaad6b5224961fcc346498
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_compound.c
@@ -0,0 +1,168 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example shows how to create a compound data type,
+ * write an array which has the compound data type to the file,
+ * and read back fields' subsets.
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "SDScompound.h5"
+#define DATASETNAME "ArrayOfStructures"
+#define LENGTH 10
+#define RANK 1
+
+int
+main(void)
+{
+
+ /* First structure and dataset*/
+ typedef struct s1_t {
+ int a;
+ float b;
+ double c;
+ } s1_t;
+ s1_t s1[LENGTH];
+ hid_t s1_tid; /* File datatype identifier */
+
+ /* Second structure (subset of s1_t) and dataset*/
+ typedef struct s2_t {
+ double c;
+ int a;
+ } s2_t;
+ s2_t s2[LENGTH];
+ hid_t s2_tid; /* Memory datatype handle */
+
+ /* Third "structure" ( will be used to read float field of s1) */
+ hid_t s3_tid; /* Memory datatype handle */
+ float s3[LENGTH];
+
+ int i;
+ hid_t file, dataset, space; /* Handles */
+ herr_t status;
+ hsize_t dim[] = {LENGTH}; /* Dataspace dimensions */
+
+
+ /*
+ * Initialize the data
+ */
+ for (i = 0; i< LENGTH; i++) {
+ s1[i].a = i;
+ s1[i].b = i*i;
+ s1[i].c = 1./(i+1);
+ }
+
+ /*
+ * Create the data space.
+ */
+ space = H5Screate_simple(RANK, dim, NULL);
+
+ /*
+ * Create the file.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create the memory data type.
+ */
+ s1_tid = H5Tcreate (H5T_COMPOUND, sizeof(s1_t));
+ H5Tinsert(s1_tid, "a_name", HOFFSET(s1_t, a), H5T_NATIVE_INT);
+ H5Tinsert(s1_tid, "c_name", HOFFSET(s1_t, c), H5T_NATIVE_DOUBLE);
+ H5Tinsert(s1_tid, "b_name", HOFFSET(s1_t, b), H5T_NATIVE_FLOAT);
+
+ /*
+ * Create the dataset.
+ */
+ dataset = H5Dcreate2(file, DATASETNAME, s1_tid, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Wtite data to the dataset;
+ */
+ status = H5Dwrite(dataset, s1_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s1);
+
+ /*
+ * Release resources
+ */
+ H5Tclose(s1_tid);
+ H5Sclose(space);
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT);
+
+ /*
+ * Create a data type for s2
+ */
+ s2_tid = H5Tcreate(H5T_COMPOUND, sizeof(s2_t));
+
+ H5Tinsert(s2_tid, "c_name", HOFFSET(s2_t, c), H5T_NATIVE_DOUBLE);
+ H5Tinsert(s2_tid, "a_name", HOFFSET(s2_t, a), H5T_NATIVE_INT);
+
+ /*
+ * Read two fields c and a from s1 dataset. Fields in the file
+ * are found by their names "c_name" and "a_name".
+ */
+ status = H5Dread(dataset, s2_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s2);
+
+ /*
+ * Display the fields
+ */
+ printf("\n");
+ printf("Field c : \n");
+ for( i = 0; i < LENGTH; i++) printf("%.4f ", s2[i].c);
+ printf("\n");
+
+ printf("\n");
+ printf("Field a : \n");
+ for( i = 0; i < LENGTH; i++) printf("%d ", s2[i].a);
+ printf("\n");
+
+ /*
+ * Create a data type for s3.
+ */
+ s3_tid = H5Tcreate(H5T_COMPOUND, sizeof(float));
+
+ status = H5Tinsert(s3_tid, "b_name", 0, H5T_NATIVE_FLOAT);
+
+ /*
+ * Read field b from s1 dataset. Field in the file is found by its name.
+ */
+ status = H5Dread(dataset, s3_tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, s3);
+
+ /*
+ * Display the field
+ */
+ printf("\n");
+ printf("Field b : \n");
+ for( i = 0; i < LENGTH; i++) printf("%.4f ", s3[i]);
+ printf("\n");
+
+ /*
+ * Release resources
+ */
+ H5Tclose(s2_tid);
+ H5Tclose(s3_tid);
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_crtatt.c b/privatemodules/nc4/share/hdf5_examples/c/h5_crtatt.c
new file mode 100644
index 0000000000000000000000000000000000000000..416839fc47b548af6ebfd38c26e1b5d42c8f3f0e
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_crtatt.c
@@ -0,0 +1,63 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to create an attribute attached to a
+ * dataset. It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "dset.h5"
+
+int main() {
+
+ hid_t file_id, dataset_id, attribute_id, dataspace_id; /* identifiers */
+ hsize_t dims;
+ int attr_data[2];
+ herr_t status;
+
+ /* Initialize the attribute data. */
+ attr_data[0] = 100;
+ attr_data[1] = 200;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open an existing dataset. */
+ dataset_id = H5Dopen2(file_id, "/dset", H5P_DEFAULT);
+
+ /* Create the data space for the attribute. */
+ dims = 2;
+ dataspace_id = H5Screate_simple(1, &dims, NULL);
+
+ /* Create a dataset attribute. */
+ attribute_id = H5Acreate2 (dataset_id, "Units", H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Write the attribute data. */
+ status = H5Awrite(attribute_id, H5T_NATIVE_INT, attr_data);
+
+ /* Close the attribute. */
+ status = H5Aclose(attribute_id);
+
+ /* Close the dataspace. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close to the dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_crtdat.c b/privatemodules/nc4/share/hdf5_examples/c/h5_crtdat.c
new file mode 100644
index 0000000000000000000000000000000000000000..bbb29b2558f15aa6b45011cc7967f2122fd4b6c2
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_crtdat.c
@@ -0,0 +1,51 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to create a dataset that is a 4 x 6
+ * array. It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "dset.h5"
+
+int main() {
+
+ hid_t file_id, dataset_id, dataspace_id; /* identifiers */
+ hsize_t dims[2];
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create the data space for the dataset. */
+ dims[0] = 4;
+ dims[1] = 6;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create the dataset. */
+ dataset_id = H5Dcreate2(file_id, "/dset", H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* End access to the dataset and release resources used by it. */
+ status = H5Dclose(dataset_id);
+
+ /* Terminate access to the data space. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrp.c b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrp.c
new file mode 100644
index 0000000000000000000000000000000000000000..3a94a8f3395dbf9d3ca1f66adc25c138cc408278
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrp.c
@@ -0,0 +1,40 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to create and close a group.
+ * It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "group.h5"
+
+int main() {
+
+ hid_t file_id, group_id; /* identifiers */
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create a group named "/MyGroup" in the file. */
+ group_id = H5Gcreate2(file_id, "/MyGroup", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Close the group. */
+ status = H5Gclose(group_id);
+
+ /* Terminate access to the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpar.c b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpar.c
new file mode 100644
index 0000000000000000000000000000000000000000..9e6fc4091310d108adb888d5daede2a45af74cea
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpar.c
@@ -0,0 +1,48 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates the creation of groups using absolute and
+ * relative names. It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "groups.h5"
+
+int main() {
+
+ hid_t file_id, group1_id, group2_id, group3_id; /* identifiers */
+ herr_t status;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create group "MyGroup" in the root group using absolute name. */
+ group1_id = H5Gcreate2(file_id, "/MyGroup", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create group "Group_A" in group "MyGroup" using absolute name. */
+ group2_id = H5Gcreate2(file_id, "/MyGroup/Group_A", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create group "Group_B" in group "MyGroup" using relative name. */
+ group3_id = H5Gcreate2(group1_id, "Group_B", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Close groups. */
+ status = H5Gclose(group1_id);
+ status = H5Gclose(group2_id);
+ status = H5Gclose(group3_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpd.c b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpd.c
new file mode 100644
index 0000000000000000000000000000000000000000..9c45928fd85e6065b3c68cc3492f776f7315728d
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_crtgrpd.c
@@ -0,0 +1,91 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to create a dataset in a group.
+ * It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "groups.h5"
+
+int main() {
+
+ hid_t file_id, group_id, dataset_id, dataspace_id; /* identifiers */
+ hsize_t dims[2];
+ herr_t status;
+ int i, j, dset1_data[3][3], dset2_data[2][10];
+
+ /* Initialize the first dataset. */
+ for (i = 0; i < 3; i++)
+ for (j = 0; j < 3; j++)
+ dset1_data[i][j] = j + 1;
+
+ /* Initialize the second dataset. */
+ for (i = 0; i < 2; i++)
+ for (j = 0; j < 10; j++)
+ dset2_data[i][j] = j + 1;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Create the data space for the first dataset. */
+ dims[0] = 3;
+ dims[1] = 3;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create a dataset in group "MyGroup". */
+ dataset_id = H5Dcreate2(file_id, "/MyGroup/dset1", H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Write the first dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset1_data);
+
+ /* Close the data space for the first dataset. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the first dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Open an existing group of the specified file. */
+ group_id = H5Gopen2(file_id, "/MyGroup/Group_A", H5P_DEFAULT);
+
+ /* Create the data space for the second dataset. */
+ dims[0] = 2;
+ dims[1] = 10;
+ dataspace_id = H5Screate_simple(2, dims, NULL);
+
+ /* Create the second dataset in group "Group_A". */
+ dataset_id = H5Dcreate2(group_id, "dset2", H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Write the second dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset2_data);
+
+ /* Close the data space for the second dataset. */
+ status = H5Sclose(dataspace_id);
+
+ /* Close the second dataset */
+ status = H5Dclose(dataset_id);
+
+ /* Close the group. */
+ status = H5Gclose(group_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_drivers.c b/privatemodules/nc4/share/hdf5_examples/c/h5_drivers.c
new file mode 100644
index 0000000000000000000000000000000000000000..7245794108c100be1588d04bff96efe75a7749ae
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_drivers.c
@@ -0,0 +1,104 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This shows how to use the hdf5 virtual file drivers.
+ * The example codes here do not check return values for the
+ * sake of simplicity. As in all proper programs, return codes
+ * should be checked.
+ */
+
+#include "hdf5.h"
+#include "stdlib.h"
+
+/* global variables */
+int cleanup_g = -1; /* whether to clean. Init to not set. */
+
+/* prototypes */
+void cleanup(const char *);
+void split_file(void);
+
+
+/*
+ * Cleanup a file unless $HDF5_NOCLEANUP is set.
+ */
+void
+cleanup(const char *filename)
+{
+ if (cleanup_g == -1)
+ cleanup_g = getenv("HDF5_NOCLEANUP") ? 0 : 1;
+ if (cleanup_g)
+ remove(filename);
+}
+
+
+/*
+ * This shows how to use the split file driver.
+ */
+void
+split_file(void)
+{
+ hid_t fapl, fid;
+
+ /* Example 1: Both metadata and rawdata files are in the same */
+ /* directory. Use Station1-m.h5 and Station1-r.h5 as */
+ /* the metadata and rawdata files. */
+ fapl = H5Pcreate(H5P_FILE_ACCESS);
+ H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "-r.h5", H5P_DEFAULT);
+ fid=H5Fcreate("Station1",H5F_ACC_TRUNC,H5P_DEFAULT,fapl);
+ /* using the file ... */
+ H5Fclose(fid);
+ H5Pclose(fapl);
+ /* Remove files created */
+ cleanup("Station1-m.h5");
+ cleanup("Station1-r.h5");
+
+ /* Example 2: metadata and rawdata files are in different */
+ /* directories. Use PointA-m.h5 and /tmp/PointA-r.h5 as */
+ /* the metadata and rawdata files. */
+ fapl = H5Pcreate(H5P_FILE_ACCESS);
+ H5Pset_fapl_split(fapl, "-m.h5", H5P_DEFAULT, "/tmp/%s-r.h5", H5P_DEFAULT);
+ fid=H5Fcreate("PointA",H5F_ACC_TRUNC,H5P_DEFAULT,fapl);
+ /* using the file ... */
+ H5Fclose(fid);
+ H5Pclose(fapl);
+ /* Remove files created */
+ cleanup("PointA-m.h5");
+ cleanup("/tmp/PointA-r.h5");
+
+ /* Example 3: Using default extension names for the metadata */
+ /* and rawdata files. Use Measure.meta and Measure.raw as */
+ /* the metadata and rawdata files. */
+ fapl = H5Pcreate(H5P_FILE_ACCESS);
+ H5Pset_fapl_split(fapl, NULL, H5P_DEFAULT, NULL, H5P_DEFAULT);
+ fid=H5Fcreate("Measure",H5F_ACC_TRUNC,H5P_DEFAULT,fapl);
+ /* using the file ... */
+ H5Fclose(fid);
+ H5Pclose(fapl);
+ /* Remove files created */
+ cleanup("Measure.meta");
+ cleanup("Measure.raw");
+}
+
+
+/* Main Body */
+int
+main (void)
+{
+
+ split_file();
+
+ return(0);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_elink_unix2win.c b/privatemodules/nc4/share/hdf5_examples/c/h5_elink_unix2win.c
new file mode 100644
index 0000000000000000000000000000000000000000..9c0918c6807ae2d9d9faffa42a3c5a8ae5a6fa9d
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_elink_unix2win.c
@@ -0,0 +1,206 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* This program demonstrates how to translate an external link created on
+ * a Windows machine into a format that a *nix machine can read.
+ * This is done by registering a new traversal function for external links.
+ *
+ * This example is designed to be run on Unix and will create an external
+ * link with a Windows-style path. Using the traversal function below,
+ * the example then successfully follows the external link.
+ *
+ * The external link will create a file called "u2w/u2w_target.h5".
+ * The example will fail if the directory u2w does not exist.
+ */
+
+#include "hdf5.h"
+#include <stdlib.h>
+#include <string.h>
+
+
+/* "Windows to Unix" traversal function for external links
+ *
+ * Translates a filename stored in Unix format to Windows format by replacing
+ * forward slashes with backslashes.
+ * Makes no attempt to handle Windows drive names (e.g., "C:\"), spaces within
+ * file names, quotes, etc. These are left as an exercise for the user. :)
+ * Note that this may not be necessary on your system; many Windows systems can
+ * understand Unix paths.
+ */
+static hid_t elink_unix2win_trav(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id)
+{
+ hid_t fid;
+ const char *file_name;
+ const char *obj_name;
+ char *new_fname = NULL; /* Buffer allocated to hold Unix file path */
+ ssize_t prefix_len; /* External link prefix length */
+ size_t fname_len;
+ size_t start_pos; /* Initial position in new_fname buffer */
+ size_t x; /* Counter variable */
+ hid_t ret_value = -1;
+
+ printf("Converting Unix path to Windows path.\n");
+
+ if(H5Lunpack_elink_val(udata, udata_size, NULL, &file_name, &obj_name) < 0)
+ goto error;
+ fname_len = strlen(file_name);
+
+ /* See if the external link prefix property is set */
+ if((prefix_len = H5Pget_elink_prefix(lapl_id, NULL, 0)) < 0)
+ goto error;
+
+ /* If so, prepend it to the filename. We assume that the prefix
+ * is in the correct format for the current file system.
+ */
+ if(prefix_len > 0)
+ {
+ /* Allocate a buffer to hold the filename plus prefix */
+ new_fname = malloc(prefix_len + fname_len + 1);
+
+ /* Copy the prefix into the buffer */
+ if(H5Pget_elink_prefix(lapl_id, new_fname, (size_t)(prefix_len + 1)) < 0)
+ goto error;
+
+ start_pos = prefix_len;
+ }
+ else
+ {
+ /* Allocate a buffer to hold just the filename */
+ new_fname = malloc(fname_len + 1);
+ start_pos = 0;
+ }
+
+ /* We should now copy file_name into new_fname starting at position pos.
+ * We'll convert '/' characters into '\' characters as we go.
+ */
+ for(x=0; file_name[x] != '\0'; x++)
+ {
+ if(file_name[x] == '/')
+ new_fname[x + start_pos] = '\\';
+ else
+ new_fname[x + start_pos] = file_name[x];
+ }
+ new_fname[x + start_pos] = '\0';
+
+ /* Now open the file and object within it */
+ if((fid = H5Fopen(new_fname, H5F_ACC_RDWR, H5P_DEFAULT)) < 0)
+ goto error;
+ ret_value = H5Oopen(fid, obj_name, lapl_id); /* If this fails, our return value will be negative. */
+ if(H5Fclose(fid) < 0)
+ goto error;
+
+ /* Free file name if it's been allocated */
+ if(new_fname)
+ free(new_fname);
+
+ return ret_value;
+
+error:
+ /* Free file name if it's been allocated */
+ if(new_fname)
+ free(new_fname);
+ return -1;
+}
+
+const H5L_class_t elink_unix2win_class[1] = {{
+ H5L_LINK_CLASS_T_VERS, /* H5L_class_t version */
+ H5L_TYPE_EXTERNAL, /* Link type id number */
+ "unix2win external link", /* Link class name for debugging */
+ NULL, /* Creation callback */
+ NULL, /* Move callback */
+ NULL, /* Copy callback */
+ elink_unix2win_trav, /* The actual traversal function */
+ NULL, /* Deletion callback */
+ NULL /* Query callback */
+}};
+
+
+/* The example function.
+ * Creates a file named "unix2win.h5" with an external link pointing to
+ * the file "u2w/u2w_target.h5".
+ *
+ * Registers a new traversal function for external links and then
+ * follows the external link to open the target file.
+ */
+static int
+unix2win_example(void)
+{
+ hid_t fid = (-1); /* File ID */
+ hid_t gid = (-1); /* Group ID */
+
+ /* Create the target file. */
+#ifdef H5_HAVE_WIN32_API
+ if((fid=H5Fcreate("u2w\\u2w_target.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) goto error;
+#else
+ if((fid=H5Fcreate("u2w/u2w_target.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) goto error;
+#endif
+ if(H5Fclose(fid) < 0) goto error;
+
+ /* Create the source file with an external link in Windows format */
+ if((fid=H5Fcreate("unix2win.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) goto error;
+
+ /* Create the external link */
+ if(H5Lcreate_external("u2w/../u2w/u2w_target.h5", "/", fid, "ext_link", H5P_DEFAULT, H5P_DEFAULT) < 0) goto error;
+
+ /* If we are not on Windows, assume we are on a Unix-y filesystem and
+ * follow the external link normally.
+ * If we are on Windows, register the unix2win traversal function so
+ * that external links can be traversed.
+ */
+
+#ifdef H5_HAVE_WIN32_API
+ /* Register the elink_unix2win class defined above to replace default
+ * external links
+ */
+ if(H5Lregister(elink_unix2win_class) < 0) goto error;
+#endif
+
+ /* Now follow the link */
+ if((gid = H5Gopen2(fid, "ext_link", H5P_DEFAULT)) < 0) goto error;
+ printf("Successfully followed external link.\n");
+
+ /* Close the group and the file */
+ if(H5Gclose(gid) <0) goto error;
+ if(H5Fclose(fid) <0) goto error;
+
+ return 0;
+
+ error:
+ printf("Error!\n");
+ H5E_BEGIN_TRY {
+ H5Gclose (gid);
+ H5Fclose (fid);
+ } H5E_END_TRY;
+ return -1;
+}
+
+
+/* Main function
+ *
+ * Invokes the example function.
+ */
+int
+main(void)
+{
+ int ret;
+
+ printf("Testing unix2win external links.\n");
+ ret = unix2win_example();
+
+ return ret;
+}
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_extend.c b/privatemodules/nc4/share/hdf5_examples/c/h5_extend.c
new file mode 100644
index 0000000000000000000000000000000000000000..105e553919a819cb4fce2aa9dc2ab5c2ec05f235
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_extend.c
@@ -0,0 +1,146 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example how to work with extendible datasets. The dataset
+ * must be chunked in order to be extendible.
+ *
+ * It is used in the HDF5 Tutorial.
+ */
+
+
+#include "hdf5.h"
+
+#define FILENAME "extend.h5"
+#define DATASETNAME "ExtendibleArray"
+#define RANK 2
+
+int
+main (void)
+{
+ hid_t file; /* handles */
+ hid_t dataspace, dataset;
+ hid_t filespace, memspace;
+ hid_t prop;
+
+ hsize_t dims[2] = {3, 3}; /* dataset dimensions at creation time */
+ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+ herr_t status;
+ hsize_t chunk_dims[2] = {2, 5};
+ int data[3][3] = { {1, 1, 1}, /* data to write */
+ {1, 1, 1},
+ {1, 1, 1} };
+
+ /* Variables used in extending and writing to the extended portion of dataset */
+ hsize_t size[2];
+ hsize_t offset[2];
+ hsize_t dimsext[2] = {7, 3}; /* extend dimensions */
+ int dataext[7][3] = { {2, 3, 4},
+ {2, 3, 4},
+ {2, 3, 4},
+ {2, 3, 4},
+ {2, 3, 4},
+ {2, 3, 4},
+ {2, 3, 4} };
+
+ /* Variables used in reading data back */
+ hsize_t chunk_dimsr[2];
+ hsize_t dimsr[2];
+ hsize_t i, j;
+ int rdata[10][3];
+ herr_t status_n;
+ int rank, rank_chunk;
+
+ /* Create the data space with unlimited dimensions. */
+ dataspace = H5Screate_simple (RANK, dims, maxdims);
+
+ /* Create a new file. If file exists its contents will be overwritten. */
+ file = H5Fcreate (FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Modify dataset creation properties, i.e. enable chunking */
+ prop = H5Pcreate (H5P_DATASET_CREATE);
+ status = H5Pset_chunk (prop, RANK, chunk_dims);
+
+ /* Create a new dataset within the file using chunk
+ creation properties. */
+ dataset = H5Dcreate2 (file, DATASETNAME, H5T_NATIVE_INT, dataspace,
+ H5P_DEFAULT, prop, H5P_DEFAULT);
+
+ /* Write data to dataset */
+ status = H5Dwrite (dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+
+ /* Extend the dataset. Dataset becomes 10 x 3 */
+ size[0] = dims[0]+ dimsext[0];
+ size[1] = dims[1];
+ status = H5Dset_extent (dataset, size);
+
+ /* Select a hyperslab in extended portion of dataset */
+ filespace = H5Dget_space (dataset);
+ offset[0] = 3;
+ offset[1] = 0;
+ status = H5Sselect_hyperslab (filespace, H5S_SELECT_SET, offset, NULL,
+ dimsext, NULL);
+
+ /* Define memory space */
+ memspace = H5Screate_simple (RANK, dimsext, NULL);
+
+ /* Write the data to the extended portion of dataset */
+ status = H5Dwrite (dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, dataext);
+
+ /* Close resources */
+ status = H5Dclose (dataset);
+ status = H5Pclose (prop);
+ status = H5Sclose (dataspace);
+ status = H5Sclose (memspace);
+ status = H5Sclose (filespace);
+ status = H5Fclose (file);
+
+ /********************************************
+ * Re-open the file and read the data back. *
+ ********************************************/
+
+ file = H5Fopen (FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen2 (file, DATASETNAME, H5P_DEFAULT);
+
+ filespace = H5Dget_space (dataset);
+ rank = H5Sget_simple_extent_ndims (filespace);
+ status_n = H5Sget_simple_extent_dims (filespace, dimsr, NULL);
+
+ prop = H5Dget_create_plist (dataset);
+
+ if (H5D_CHUNKED == H5Pget_layout (prop))
+ rank_chunk = H5Pget_chunk (prop, rank, chunk_dimsr);
+
+ memspace = H5Screate_simple (rank, dimsr, NULL);
+ status = H5Dread (dataset, H5T_NATIVE_INT, memspace, filespace,
+ H5P_DEFAULT, rdata);
+
+ printf("\n");
+ printf("Dataset: \n");
+ for (j = 0; j < dimsr[0]; j++)
+ {
+ for (i = 0; i < dimsr[1]; i++)
+ printf("%d ", rdata[j][i]);
+ printf("\n");
+ }
+
+ status = H5Pclose (prop);
+ status = H5Dclose (dataset);
+ status = H5Sclose (filespace);
+ status = H5Sclose (memspace);
+ status = H5Fclose (file);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_extend_write.c b/privatemodules/nc4/share/hdf5_examples/c/h5_extend_write.c
new file mode 100644
index 0000000000000000000000000000000000000000..74f6c01d5119570714a89d5c2f04ae7394953ef5
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_extend_write.c
@@ -0,0 +1,189 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example shows how to work with extendible dataset.
+ * In the current version of the library dataset MUST be
+ * chunked.
+ *
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "SDSextendible.h5"
+#define DATASETNAME "ExtendibleArray"
+#define RANK 2
+#define NX 10
+#define NY 5
+
+int
+main (void)
+{
+ hid_t file; /* handles */
+ hid_t dataspace, dataset;
+ hid_t filespace;
+ hid_t cparms;
+ hsize_t dims[2] = { 3, 3}; /*
+ * dataset dimensions
+ * at the creation time
+ */
+ hsize_t dims1[2] = { 3, 3}; /* data1 dimensions */
+ hsize_t dims2[2] = { 7, 1}; /* data2 dimensions */
+ hsize_t dims3[2] = { 2, 2}; /* data3 dimensions */
+
+ hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
+ hsize_t chunk_dims[2] ={2, 5};
+ hsize_t size[2];
+ hsize_t offset[2];
+
+ herr_t status;
+
+ int data1[3][3] = { {1, 1, 1}, /* data to write */
+ {1, 1, 1},
+ {1, 1, 1} };
+
+ int data2[7] = { 2, 2, 2, 2, 2, 2, 2};
+
+ int data3[2][2] = { {3, 3},
+ {3, 3} };
+ int fillvalue = 0;
+
+ /*
+ * Create the data space with unlimited dimensions.
+ */
+ dataspace = H5Screate_simple(RANK, dims, maxdims);
+
+ /*
+ * Create a new file. If file exists its contents will be overwritten.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Modify dataset creation properties, i.e. enable chunking.
+ */
+ cparms = H5Pcreate(H5P_DATASET_CREATE);
+ status = H5Pset_chunk( cparms, RANK, chunk_dims);
+ status = H5Pset_fill_value (cparms, H5T_NATIVE_INT, &fillvalue );
+
+ /*
+ * Create a new dataset within the file using cparms
+ * creation properties.
+ */
+ dataset = H5Dcreate2(file, DATASETNAME, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
+ cparms, H5P_DEFAULT);
+
+ /*
+ * Extend the dataset. This call assures that dataset is at least 3 x 3.
+ */
+ size[0] = 3;
+ size[1] = 3;
+ status = H5Dset_extent(dataset, size);
+
+ /*
+ * Select a hyperslab.
+ */
+ filespace = H5Dget_space(dataset);
+ offset[0] = 0;
+ offset[1] = 0;
+ status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
+ dims1, NULL);
+
+ /*
+ * Write the data to the hyperslab.
+ */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
+ H5P_DEFAULT, data1);
+
+ /*
+ * Extend the dataset. Dataset becomes 10 x 3.
+ */
+ dims[0] = dims1[0] + dims2[0];
+ size[0] = dims[0];
+ size[1] = dims[1];
+ status = H5Dset_extent(dataset, size);
+
+ /*
+ * Select a hyperslab.
+ */
+ filespace = H5Dget_space(dataset);
+ offset[0] = 3;
+ offset[1] = 0;
+ status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
+ dims2, NULL);
+
+ /*
+ * Define memory space
+ */
+ dataspace = H5Screate_simple(RANK, dims2, NULL);
+
+ /*
+ * Write the data to the hyperslab.
+ */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
+ H5P_DEFAULT, data2);
+
+ /*
+ * Extend the dataset. Dataset becomes 10 x 5.
+ */
+ dims[1] = dims1[1] + dims3[1];
+ size[0] = dims[0];
+ size[1] = dims[1];
+ status = H5Dset_extent(dataset, size);
+
+ /*
+ * Select a hyperslab
+ */
+ filespace = H5Dget_space(dataset);
+ offset[0] = 0;
+ offset[1] = 3;
+ status = H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
+ dims3, NULL);
+
+ /*
+ * Define memory space.
+ */
+ dataspace = H5Screate_simple(RANK, dims3, NULL);
+
+ /*
+ * Write the data to the hyperslab.
+ */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, dataspace, filespace,
+ H5P_DEFAULT, data3);
+
+ /*
+ * Resulting dataset
+ *
+ * 3 3 3 2 2
+ * 3 3 3 2 2
+ * 3 3 3 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ * 2 0 0 0 0
+ */
+ /*
+ * Close/release resources.
+ */
+ H5Dclose(dataset);
+ H5Sclose(dataspace);
+ H5Sclose(filespace);
+ H5Pclose(cparms);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_extlink.c b/privatemodules/nc4/share/hdf5_examples/c/h5_extlink.c
new file mode 100644
index 0000000000000000000000000000000000000000..e8a24b878a93009484b9f21525cebea5a12954d2
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_extlink.c
@@ -0,0 +1,673 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/* This program demonstrates how to create and use "external links" in
+ * HDF5.
+ *
+ * External links point from one HDF5 file to an object (Group, Dataset, or
+ * committed Datatype) in another file.
+ */
+
+#include "hdf5.h"
+#include <string.h>
+
+#define SOURCE_FILE "extlink_source.h5"
+#define TARGET_FILE "extlink_target.h5"
+
+#define PREFIX_SOURCE_FILE "extlink_prefix_source.h5"
+
+#define SOFT_LINK_FILE "soft_link.h5"
+#define SOFT_LINK_NAME "soft_link_to_group"
+#define UD_SOFT_LINK_NAME "ud_soft_link"
+#define TARGET_GROUP "target_group"
+
+#define UD_SOFT_CLASS 65
+
+#define HARD_LINK_FILE "hard_link.h5"
+#define HARD_LINK_NAME "hard_link_to_group"
+#define UD_HARD_LINK_NAME "ud_hard_link"
+
+#define UD_HARD_CLASS 66
+
+#define PLIST_LINK_PROP "plist_link_prop"
+#define UD_PLIST_CLASS 66
+
+
+
+/* Basic external link example
+ *
+ * Creates two files and uses an external link to access an object in the
+ * second file from the first file.
+ */
+static void extlink_example(void)
+{
+ hid_t source_file_id, targ_file_id;
+ hid_t group_id, group2_id;
+
+ /* Create two files, a source and a target */
+ source_file_id = H5Fcreate(SOURCE_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ targ_file_id = H5Fcreate(TARGET_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create a group in the target file for the external link to point to. */
+ group_id = H5Gcreate2(targ_file_id, "target_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Close the group and the target file */
+ H5Gclose(group_id);
+
+ /* Create an external link in the source file pointing to the target group.
+ * We could instead have created the external link first, then created the
+ * group it points to; the order doesn't matter.
+ */
+ H5Lcreate_external(TARGET_FILE, "target_group", source_file_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Now we can use the external link to create a new group inside the
+ * target group (even though the target file is closed!). The external
+ * link works just like a soft link.
+ */
+ group_id = H5Gcreate2(source_file_id, "ext_link/new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* The group is inside the target file and we can access it normally.
+ * Here, group_id and group2_id point to the same group inside the
+ * target file.
+ */
+ group2_id = H5Gopen2(targ_file_id, "target_group/new_group", H5P_DEFAULT);
+
+ /* Don't forget to close the IDs we opened. */
+ H5Gclose(group2_id);
+ H5Gclose(group_id);
+
+ H5Fclose(targ_file_id);
+ H5Fclose(source_file_id);
+
+ /* The link from the source file to the target file will work as long as
+ * the target file can be found. If the target file is moved, renamed,
+ * or deleted in the filesystem, HDF5 won't be able to find it and the
+ * external link will "dangle."
+ */
+}
+
+
+/* External link prefix example
+ *
+ * Uses a group access property list to set a "prefix" for the filenames
+ * accessed through an external link.
+ *
+ * Group access property lists inherit from link access property lists;
+ * the external link prefix property is actually a property of LAPLs.
+ *
+ * This example requires a "red" directory and a "blue" directory to exist
+ * where it is run (so to run this example on Unix, first mkdir red and mkdir
+ * blue).
+ */
+static void extlink_prefix_example(void)
+{
+ hid_t source_file_id, red_file_id, blue_file_id;
+ hid_t group_id, group2_id;
+ hid_t gapl_id;
+
+ /* Create three files, a source and two targets. The targets will have
+ * the same name, but one will be located in the red directory and one will
+ * be located in the blue directory */
+ source_file_id = H5Fcreate(PREFIX_SOURCE_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ red_file_id = H5Fcreate("red/prefix_target.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ blue_file_id = H5Fcreate("blue/prefix_target.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* This test needs a red and a blue directory in the filesystem. If they're not present,
+ * trying to create the files above will fail.
+ */
+ if(red_file_id < 0 || blue_file_id < 0)
+ printf("This test requires directories named 'red' and 'blue' to exist. Did you forget to create them?\n");
+
+ /* Create an external link in the source file pointing to the root group of
+ * a file named prefix_target.h5. This file doesn't exist in the current
+ * directory, but the files in the red and blue directories both have this
+ * name.
+ */
+ H5Lcreate_external("prefix_target.h5", "/", source_file_id, "ext_link", H5P_DEFAULT, H5P_DEFAULT);
+
+ /* If we tried to traverse the external link now, we would fail (since the
+ * file it points to doesn't exist). Instead, we'll create a group access
+ * property list that will provide a prefix path to the external link.
+ * Group access property lists inherit the properties of link access
+ * property lists.
+ */
+ gapl_id = H5Pcreate(H5P_GROUP_ACCESS);
+ H5Pset_elink_prefix(gapl_id, "red/");
+
+ /* Now if we traverse the external link, HDF5 will look for an external
+ * file named red/prefix_target.h5, which exists.
+ * To pass the group access property list, we need to use H5Gopen2.
+ */
+ group_id = H5Gopen2(source_file_id, "ext_link", gapl_id);
+
+ /* Now we can use the open group ID to create a new group inside the
+ * "red" file.
+ */
+ group2_id = H5Gcreate2(group_id, "pink", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Close both groups. */
+ H5Gclose(group2_id);
+ H5Gclose(group_id);
+
+ /* If we change the prefix, the same external link can find a file in the blue
+ * directory.
+ */
+ H5Pset_elink_prefix(gapl_id, "blue/");
+ group_id = H5Gopen2(source_file_id, "ext_link", gapl_id);
+ group2_id = H5Gcreate2(group_id, "sky blue", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Close both groups. */
+ H5Gclose(group2_id);
+ H5Gclose(group_id);
+
+ /* Each file has had a group created inside it using the same external link. */
+ group_id = H5Gopen2(red_file_id, "pink", H5P_DEFAULT);
+ group2_id = H5Gopen2(blue_file_id, "sky blue", H5P_DEFAULT);
+
+ /* Clean up our open IDs */
+ H5Gclose(group2_id);
+ H5Gclose(group_id);
+ H5Pclose(gapl_id);
+ H5Fclose(blue_file_id);
+ H5Fclose(red_file_id);
+ H5Fclose(source_file_id);
+
+ /* User-defined links can expand on the ability to pass in parameters
+ * using an access property list; for instance, a user-defined link
+ * might function like an external link but allow the full filename to be
+ * passed in through the access property list.
+ */
+}
+
+
+/* Soft Link example
+ *
+ * Create a new class of user-defined links that behave like HDF5's built-in
+ * soft links.
+ *
+ * This isn't very useful by itself (HDF5's soft links already do the same
+ * thing), but it can serve as an example for how to reference objects by
+ * name.
+ */
+
+/* We need to define the callback function that the soft link will use.
+ * It is defined after the example below.
+ * To keep the example simple, these links don't have a query callback.
+ * In general, link classes should always be query-able.
+ * We might also have wanted to supply a creation callback that checks
+ * that a path was supplied in the udata.
+ */
+static hid_t UD_soft_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id);
+
+static void soft_link_example(void)
+{
+ hid_t file_id;
+ hid_t group_id;
+ /* Define the link class that we'll use to register "user-defined soft
+ * links" using the callbacks we defined above.
+ * A link class can have NULL for any callback except its traverse
+ * callback.
+ */
+ const H5L_class_t UD_soft_class[1] = {{
+ H5L_LINK_CLASS_T_VERS, /* Version number for this struct.
+ * This field is always H5L_LINK_CLASS_T_VERS */
+ (H5L_type_t)UD_SOFT_CLASS, /* Link class id number. This can be any
+ * value between H5L_TYPE_UD_MIN (64) and
+ * H5L_TYPE_MAX (255). It should be a
+ * value that isn't already being used by
+ * another kind of link. We'll use 65. */
+ "UD_soft_link", /* Link class name for debugging */
+ NULL, /* Creation callback */
+ NULL, /* Move callback */
+ NULL, /* Copy callback */
+ UD_soft_traverse, /* The actual traversal function */
+ NULL, /* Deletion callback */
+ NULL /* Query callback */
+ }};
+
+
+ /* First, create a file and an object within the file for the link to
+ * point to.
+ */
+ file_id = H5Fcreate(SOFT_LINK_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ group_id = H5Gcreate2(file_id, TARGET_GROUP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5Gclose(group_id);
+
+ /* This is how we create a normal soft link to the group.
+ */
+ H5Lcreate_soft(TARGET_GROUP, file_id, SOFT_LINK_NAME, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* To do the same thing using a user-defined link, we first have to
+ * register the link class we defined.
+ */
+ H5Lregister(UD_soft_class);
+
+ /* Now create a user-defined link. We give it the path to the group
+ * as its udata.1
+ */
+ H5Lcreate_ud(file_id, UD_SOFT_LINK_NAME, (H5L_type_t)UD_SOFT_CLASS, TARGET_GROUP,
+ strlen(TARGET_GROUP) + 1, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* We can access the group through the UD soft link like we would through
+ * a normal soft link. This link will still dangle if the object's
+ * original name is changed or unlinked.
+ */
+ group_id = H5Gopen2(file_id, UD_SOFT_LINK_NAME, H5P_DEFAULT);
+
+ /* The group is now open normally. Don't forget to close it! */
+ H5Gclose(group_id);
+
+ H5Fclose(file_id);
+}
+
+/* UD_soft_traverse
+ * The actual traversal function simply needs to open the correct object by
+ * name and return its ID.
+ */
+
+static hid_t UD_soft_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id)
+{
+ const char *target = (const char *) udata;
+ hid_t ret_value;
+
+ /* Pass the udata straight through to HDF5. If it's invalid, let HDF5
+ * return an error.
+ */
+ ret_value = H5Oopen(cur_group, target, lapl_id);
+ return ret_value;
+}
+
+
+/* Hard Link example
+ *
+ * Create a new class of user-defined links that behave like HDF5's built-in
+ * hard links.
+ *
+ * This isn't very useful by itself (HDF5's hard links already do the same
+ * thing), but it can serve as an example for how to reference objects by
+ * address.
+ */
+
+/* We need to define the callback functions that the hard link will use.
+ * These are defined after the example below.
+ * To keep the example simple, these links don't have a query callback.
+ * Generally, real link classes should always be query-able.
+ */
+static herr_t UD_hard_create(const char *link_name, hid_t loc_group,
+ const void *udata, size_t udata_size, hid_t lcpl_id);
+static herr_t UD_hard_delete(const char *link_name, hid_t loc_group,
+ const void *udata, size_t udata_size);
+static hid_t UD_hard_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id);
+
+static void hard_link_example(void)
+{
+ hid_t file_id;
+ hid_t group_id;
+ H5L_info_t li;
+ /* Define the link class that we'll use to register "user-defined hard
+ * links" using the callbacks we defined above.
+ * A link class can have NULL for any callback except its traverse
+ * callback.
+ */
+ const H5L_class_t UD_hard_class[1] = {{
+ H5L_LINK_CLASS_T_VERS, /* Version number for this struct.
+ * This field is always H5L_LINK_CLASS_T_VERS */
+ (H5L_type_t)UD_HARD_CLASS, /* Link class id number. This can be any
+ * value between H5L_TYPE_UD_MIN (64) and
+ * H5L_TYPE_MAX (255). It should be a
+ * value that isn't already being used by
+ * another kind of link. We'll use 66. */
+ "UD_hard_link", /* Link class name for debugging */
+ UD_hard_create, /* Creation callback */
+ NULL, /* Move callback */
+ NULL, /* Copy callback */
+ UD_hard_traverse, /* The actual traversal function */
+ UD_hard_delete, /* Deletion callback */
+ NULL /* Query callback */
+ }};
+
+
+ /* First, create a file and an object within the file for the link to
+ * point to.
+ */
+ file_id = H5Fcreate(HARD_LINK_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ group_id = H5Gcreate2(file_id, TARGET_GROUP, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5Gclose(group_id);
+
+ /* This is how we create a normal hard link to the group. This
+ * creates a second "name" for the group.
+ */
+ H5Lcreate_hard(file_id, TARGET_GROUP, file_id, HARD_LINK_NAME, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* To do the same thing using a user-defined link, we first have to
+ * register the link class we defined.
+ */
+ H5Lregister(UD_hard_class);
+
+ /* Since hard links link by object address, we'll need to retrieve
+ * the target group's address. We do this by calling H5Lget_info
+ * on a hard link to the object.
+ */
+ H5Lget_info(file_id, TARGET_GROUP, &li, H5P_DEFAULT);
+
+ /* Now create a user-defined link. We give it the group's address
+ * as its udata.
+ */
+ H5Lcreate_ud(file_id, UD_HARD_LINK_NAME, (H5L_type_t)UD_HARD_CLASS, &(li.u.address),
+ sizeof(li.u.address), H5P_DEFAULT, H5P_DEFAULT);
+
+ /* The UD hard link has now incremented the group's reference count
+ * like a normal hard link would. This means that we can unlink the
+ * other two links to that group and it won't be deleted until the
+ * UD hard link is deleted.
+ */
+ H5Ldelete(file_id, TARGET_GROUP, H5P_DEFAULT);
+ H5Ldelete(file_id, HARD_LINK_NAME, H5P_DEFAULT);
+
+ /* The group is still accessible through the UD hard link. If this were
+ * a soft link instead, the object would have been deleted when the last
+ * hard link to it was unlinked. */
+ group_id = H5Gopen2(file_id, UD_HARD_LINK_NAME, H5P_DEFAULT);
+
+ /* The group is now open normally. Don't forget to close it! */
+ H5Gclose(group_id);
+
+ /* Removing the user-defined hard link will delete the group. */
+ H5Ldelete(file_id, UD_HARD_LINK_NAME, H5P_DEFAULT);
+
+ H5Fclose(file_id);
+}
+
+/* Callbacks for User-defined hard links. */
+/* UD_hard_create
+ * The most important thing this callback does is to increment the reference
+ * count on the target object. Without this step, the object could be
+ * deleted while this link still pointed to it, resulting in possible data
+ * corruption!
+ * The create callback also checks the arguments used to create this link.
+ * If this function returns a negative value, the call to H5Lcreate_ud()
+ * will also return failure and the link will not be created.
+ */
+static herr_t UD_hard_create(const char *link_name, hid_t loc_group,
+ const void *udata, size_t udata_size, hid_t lcpl_id)
+{
+ haddr_t addr;
+ hid_t target_obj = -1;
+ herr_t ret_value = 0;
+
+ /* Make sure that the address passed in looks valid */
+ if(udata_size != sizeof(haddr_t))
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+ addr = *((const haddr_t *) udata);
+
+ /* Open the object this link points to so that we can increment
+ * its reference count. This also ensures that the address passed
+ * in points to a real object (although this check is not perfect!) */
+ target_obj= H5Oopen_by_addr(loc_group, addr);
+ if(target_obj < 0)
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+ /* Increment the reference count of the target object */
+ if(H5Oincr_refcount(target_obj) < 0)
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+done:
+ /* Close the target object if we opened it */
+ if(target_obj >= 0)
+ H5Oclose(target_obj);
+ return ret_value;
+}
+
+/* UD_hard_delete
+ * Since the creation function increments the object's reference count, it's
+ * important to decrement it again when the link is deleted.
+ */
+static herr_t UD_hard_delete(const char *link_name, hid_t loc_group,
+ const void *udata, size_t udata_size)
+{
+ haddr_t addr;
+ hid_t target_obj = -1;
+ herr_t ret_value = 0;
+
+ /* Sanity check; we have already verified the udata's size in the creation
+ * callback.
+ */
+ if(udata_size != sizeof(haddr_t))
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+ addr = *((const haddr_t *) udata);
+
+ /* Open the object this link points to */
+ target_obj= H5Oopen_by_addr(loc_group, addr);
+ if(target_obj < 0)
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+ /* Decrement the reference count of the target object */
+ if(H5Odecr_refcount(target_obj) < 0)
+ {
+ ret_value = -1;
+ goto done;
+ }
+
+done:
+ /* Close the target object if we opened it */
+ if(target_obj >= 0)
+ H5Oclose(target_obj);
+ return ret_value;
+}
+
+/* UD_hard_traverse
+ * The actual traversal function simply needs to open the correct object and
+ * return its ID.
+ */
+static hid_t UD_hard_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id)
+{
+ haddr_t addr;
+ hid_t ret_value = -1;
+
+ /* Sanity check; we have already verified the udata's size in the creation
+ * callback.
+ */
+ if(udata_size != sizeof(haddr_t))
+ return -1;
+
+ addr = *((const haddr_t *) udata);
+
+ /* Open the object by address. If H5Oopen_by_addr fails, ret_value will
+ * be negative to indicate that the traversal function failed.
+ */
+ ret_value = H5Oopen_by_addr(cur_group, addr);
+
+ return ret_value;
+}
+
+
+
+/* Plist example
+ *
+ * Create a new class of user-defined links that open objects within a file
+ * based on a value passed in through a link access property list.
+ *
+ * Group, dataset, and datatype access property lists all inherit from link
+ * access property lists, so they can be used instead of LAPLs.
+ */
+
+/* We need to define the callback functions that this link type will use.
+ * These are defined after the example below.
+ * These links have no udata, so they don't need a query function.
+ */
+static hid_t UD_plist_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id);
+
+static void plist_link_example(void)
+{
+ hid_t file_id;
+ hid_t group_id, group2_id;
+ hid_t gapl_id;
+ char *path = NULL;
+
+ /* Define the link class that we'll use to register "plist
+ * links" using the callback we defined above.
+ * A link class can have NULL for any callback except its traverse
+ * callback.
+ */
+ const H5L_class_t UD_plist_class[1] = {{
+ H5L_LINK_CLASS_T_VERS, /* Version number for this struct.
+ * This field is always H5L_LINK_CLASS_T_VERS */
+ (H5L_type_t)UD_PLIST_CLASS, /* Link class id number. This can be any
+ * value between H5L_TYPE_UD_MIN (64) and
+ * H5L_TYPE_MAX (255). It should be a
+ * value that isn't already being used by
+ * another kind of link. We'll use 67. */
+ "UD_plist_link", /* Link class name for debugging */
+ NULL, /* Creation callback */
+ NULL, /* Move callback */
+ NULL, /* Copy callback */
+ UD_plist_traverse, /* The actual traversal function */
+ NULL, /* Deletion callback */
+ NULL /* Query callback */
+ }};
+
+
+ /* First, create a file and two objects within the file for the link to
+ * point to.
+ */
+ file_id = H5Fcreate(HARD_LINK_FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ group_id = H5Gcreate2(file_id, "group_1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5Gclose(group_id);
+ group_id = H5Gcreate2(file_id, "group_1/group_2", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ H5Gclose(group_id);
+
+ /* Register "plist links" and create one. It has no udata at all. */
+ H5Lregister(UD_plist_class);
+ H5Lcreate_ud(file_id, "plist_link", (H5L_type_t)UD_PLIST_CLASS, NULL, 0,
+ H5P_DEFAULT, H5P_DEFAULT);
+
+ /* Create a group access property list to pass in the target for the
+ * plist link.
+ */
+ gapl_id = H5Pcreate(H5P_GROUP_ACCESS);
+
+ /* There is no HDF5 API for setting the property that controls these
+ * links, so we have to add the property manually
+ */
+ H5Pinsert2(gapl_id, PLIST_LINK_PROP, sizeof(const char *), &(path), NULL, NULL, NULL, NULL, NULL, NULL);
+
+ /* Set the property to point to the first group. */
+ path = "group_1";
+ H5Pset(gapl_id, PLIST_LINK_PROP, &path);
+
+ /* Open the first group through the plist link using the GAPL we just
+ * created */
+ group_id = H5Gopen2(file_id, "plist_link", gapl_id);
+
+ /* If we change the value set on the property list, it will change where
+ * the plist link points.
+ */
+ path = "group_1/group_2";
+ H5Pset(gapl_id, PLIST_LINK_PROP, &path);
+ group2_id = H5Gopen2(file_id, "plist_link", gapl_id);
+
+ /* group_id points to group_1 and group2_id points to group_2, both opened
+ * through the same link.
+ * Using more than one of this type of link could quickly become confusing,
+ * since they will all use the same property list; however, there is
+ * nothing to prevent the links from changing the property list in their
+ * traverse callbacks.
+ */
+
+ /* Clean up */
+ H5Pclose(gapl_id);
+ H5Gclose(group_id);
+ H5Gclose(group2_id);
+ H5Fclose(file_id);
+}
+
+/* Traversal callback for User-defined plist links. */
+/* UD_plist_traverse
+ * Open a path passed in through the property list.
+ */
+static hid_t UD_plist_traverse(const char *link_name, hid_t cur_group,
+ const void *udata, size_t udata_size, hid_t lapl_id)
+{
+ char * path;
+ hid_t ret_value = -1;
+
+ /* If the link property isn't set or can't be found, traversal fails. */
+ if(H5Pexist(lapl_id, PLIST_LINK_PROP) < 0)
+ goto error;
+
+ if(H5Pget(lapl_id, PLIST_LINK_PROP, &path) < 0)
+ goto error;
+
+ /* Open the object by address. If H5Oopen_by_addr fails, ret_value will
+ * be negative to indicate that the traversal function failed.
+ */
+ ret_value = H5Oopen(cur_group, path, lapl_id);
+
+ return ret_value;
+
+error:
+ return -1;
+}
+
+
+
+/* Main function
+ *
+ * Invokes the example functions.
+ */
+ int
+main(void)
+{
+ printf("Testing basic external links.\n");
+ extlink_example();
+
+ printf("Testing external link prefixes.\n");
+ extlink_prefix_example();
+
+ printf("Testing user-defined soft links.\n");
+ soft_link_example();
+
+ printf("Testing user-defined hard links.\n");
+ hard_link_example();
+
+ printf("Testing user-defined property list links.\n");
+ plist_link_example();
+
+ return 0;
+}
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_group.c b/privatemodules/nc4/share/hdf5_examples/c/h5_group.c
new file mode 100644
index 0000000000000000000000000000000000000000..6b73210d8e82bee7171a2775ff2adc3eaecf7ded
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_group.c
@@ -0,0 +1,261 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This program creates a group in the file and two datasets in the group.
+ * Hard link to the group object is created and one of the datasets is accessed
+ * under new name.
+ * Iterator functions are used to find information about the objects
+ * in the root group and in the created group.
+ */
+
+
+#include "hdf5.h"
+
+
+#define H5FILE_NAME "group.h5"
+#define RANK 2
+
+static herr_t file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo,
+ void *opdata); /* Link iteration operator function */
+static herr_t group_info(hid_t loc_id, const char *name, const H5L_info_t *linfo,
+ void *opdata); /* Link iteration operator function */
+int
+main(void)
+{
+
+ hid_t file;
+ hid_t grp;
+ hid_t dataset, dataspace;
+ hid_t plist;
+
+ herr_t status;
+ hsize_t dims[2];
+ hsize_t cdims[2];
+
+ int idx_f, idx_g;
+
+ /*
+ * Create a file.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create a group in the file.
+ */
+ grp = H5Gcreate2(file, "/Data", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create dataset "Compressed Data" in the group using absolute
+ * name. Dataset creation property list is modified to use
+ * GZIP compression with the compression effort set to 6.
+ * Note that compression can be used only when dataset is chunked.
+ */
+ dims[0] = 1000;
+ dims[1] = 20;
+ cdims[0] = 20;
+ cdims[1] = 20;
+ dataspace = H5Screate_simple(RANK, dims, NULL);
+ plist = H5Pcreate(H5P_DATASET_CREATE);
+ H5Pset_chunk(plist, 2, cdims);
+ H5Pset_deflate( plist, 6);
+ dataset = H5Dcreate2(file, "/Data/Compressed_Data", H5T_NATIVE_INT,
+ dataspace, H5P_DEFAULT, plist, H5P_DEFAULT);
+ /*
+ * Close the first dataset .
+ */
+ H5Sclose(dataspace);
+ H5Dclose(dataset);
+
+ /*
+ * Create the second dataset.
+ */
+ dims[0] = 500;
+ dims[1] = 20;
+ dataspace = H5Screate_simple(RANK, dims, NULL);
+ dataset = H5Dcreate2(file, "/Data/Float_Data", H5T_NATIVE_FLOAT,
+ dataspace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ *Close the second dataset and file.
+ */
+ H5Sclose(dataspace);
+ H5Dclose(dataset);
+ H5Pclose(plist);
+ H5Gclose(grp);
+ H5Fclose(file);
+
+ /*
+ * Now reopen the file and group in the file.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT);
+ grp = H5Gopen2(file, "Data", H5P_DEFAULT);
+
+ /*
+ * Access "Compressed_Data" dataset in the group.
+ */
+ dataset = H5Dopen2(grp, "Compressed_Data", H5P_DEFAULT);
+ if( dataset < 0) printf(" Dataset 'Compressed-Data' is not found. \n");
+ printf("\"/Data/Compressed_Data\" dataset is open \n");
+
+ /*
+ * Close the dataset.
+ */
+ status = H5Dclose(dataset);
+
+ /*
+ * Create hard link to the Data group.
+ */
+ status = H5Lcreate_hard(file, "Data", H5L_SAME_LOC, "Data_new", H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * We can access "Compressed_Data" dataset using created
+ * hard link "Data_new".
+ */
+ dataset = H5Dopen2(file, "/Data_new/Compressed_Data", H5P_DEFAULT);
+ if( dataset < 0) printf(" Dataset is not found. \n");
+ printf("\"/Data_new/Compressed_Data\" dataset is open \n");
+
+ /*
+ * Close the dataset.
+ */
+ status = H5Dclose(dataset);
+
+
+ /*
+ * Use iterator to see the names of the objects in the root group.
+ */
+ idx_f = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
+
+ /*
+ * Unlink name "Data" and use iterator to see the names
+ * of the objects in the file root direvtory.
+ */
+ if(H5Ldelete(file, "Data", H5P_DEFAULT) < 0)
+ printf(" H5Ldelete failed \n");
+ else
+ printf("\"Data\" is unlinked \n");
+
+ idx_f = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, NULL, file_info, NULL);
+
+ /*
+ * Use iterator to see the names of the objects in the group
+ * /Data_new.
+ */
+ idx_g = H5Literate_by_name(grp, "/Data_new", H5_INDEX_NAME, H5_ITER_INC, NULL, group_info, NULL, H5P_DEFAULT);
+
+ /*
+ * Close the file.
+ */
+
+ H5Gclose(grp);
+ H5Fclose(file);
+
+ return 0;
+}
+
+/*
+ * Operator function.
+ */
+static herr_t
+file_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata)
+{
+ /* avoid compiler warnings */
+ loc_id = loc_id;
+ opdata = opdata;
+ linfo = linfo;
+
+ /*
+ * Display group name. The name is passed to the function by
+ * the Library. Some magic :-)
+ */
+ printf("\nName : %s\n", name);
+
+ return 0;
+}
+
+
+/*
+ * Operator function.
+ */
+static herr_t
+group_info(hid_t loc_id, const char *name, const H5L_info_t *linfo, void *opdata)
+{
+ hid_t did; /* dataset identifier */
+ hid_t tid; /* datatype identifier */
+ H5T_class_t t_class;
+ hid_t pid; /* data_property identifier */
+ hsize_t chunk_dims_out[2];
+ int rank_chunk;
+
+ /* avoid warnings */
+ opdata = opdata;
+ linfo = linfo;
+
+ /*
+ * Open the datasets using their names.
+ */
+ did = H5Dopen2(loc_id, name, H5P_DEFAULT);
+
+ /*
+ * Display dataset name.
+ */
+ printf("\nName : %s\n", name);
+
+ /*
+ * Display dataset information.
+ */
+ tid = H5Dget_type(did); /* get datatype*/
+ pid = H5Dget_create_plist(did); /* get creation property list */
+
+ /*
+ * Check if dataset is chunked.
+ */
+ if(H5D_CHUNKED == H5Pget_layout(pid)) {
+ /*
+ * get chunking information: rank and dimensions.
+ */
+ rank_chunk = H5Pget_chunk(pid, 2, chunk_dims_out);
+ printf("chunk rank %d, dimensions %lu x %lu\n", rank_chunk,
+ (unsigned long)(chunk_dims_out[0]),
+ (unsigned long)(chunk_dims_out[1]));
+ }
+ else {
+ t_class = H5Tget_class(tid);
+ if(t_class < 0) {
+ puts(" Invalid datatype.\n");
+ }
+ else {
+ if(t_class == H5T_INTEGER)
+ puts(" Datatype is 'H5T_NATIVE_INTEGER'.\n");
+ if(t_class == H5T_FLOAT)
+ puts(" Datatype is 'H5T_NATIVE_FLOAT'.\n");
+ if(t_class == H5T_STRING)
+ puts(" Datatype is 'H5T_NATIVE_STRING'.\n");
+ if(t_class == H5T_BITFIELD)
+ puts(" Datatype is 'H5T_NATIVE_BITFIELD'.\n");
+ if(t_class == H5T_OPAQUE)
+ puts(" Datatype is 'H5T_NATIVE_OPAQUE'.\n");
+ if(t_class == H5T_COMPOUND)
+ puts(" Datatype is 'H5T_NATIVE_COMPOUND'.\n");
+ }
+ }
+
+ H5Dclose(did);
+ H5Pclose(pid);
+ H5Tclose(tid);
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_mount.c b/privatemodules/nc4/share/hdf5_examples/c/h5_mount.c
new file mode 100644
index 0000000000000000000000000000000000000000..6da71a1fa682eaafee7a48b341eb54a3ab29aef3
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_mount.c
@@ -0,0 +1,133 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This program shows the concept of "mounting files".
+ * Program creates one file with group G in it, and another
+ * file with dataset D. Then second file is mounted in the first one
+ * under the "mounting point" G. Dataset D is accessed in the first file
+ * under name /G/D and data is printed out.
+ */
+
+#include "hdf5.h"
+
+#define FILE1 "mount1.h5"
+#define FILE2 "mount2.h5"
+
+#define RANK 2
+#define NX 4
+#define NY 5
+
+int main(void)
+{
+
+ hid_t fid1, fid2, gid; /* Files and group identifiers */
+ hid_t did, tid, sid; /* Dataset and datatype identifiers */
+
+ herr_t status;
+ hsize_t dims[] = {NX,NY}; /* Dataset dimensions */
+
+ int i, j;
+ int bm[NX][NY], bm_out[NX][NY]; /* Data buffers */
+
+ /*
+ * Initialization of buffer matrix "bm"
+ */
+ for(i =0; i < NX; i++)
+ for(j = 0; j < NY; j++)
+ bm[i][j] = i + j;
+
+ /*
+ * Create first file and a group in it.
+ */
+ fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ gid = H5Gcreate2(fid1, "/G", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Close group and file
+ */
+ H5Gclose(gid);
+ H5Fclose(fid1);
+
+ /*
+ * Create second file and dataset "D" in it.
+ */
+ fid2 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+ dims[0] = NX;
+ dims[1] = NY;
+ sid = H5Screate_simple(RANK, dims, NULL);
+ did = H5Dcreate2(fid2, "D", H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write data to the dataset.
+ */
+ status = H5Dwrite(did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm);
+
+ /*
+ * Close all identifiers.
+ */
+ H5Sclose(sid);
+ H5Dclose(did);
+ H5Fclose(fid2);
+
+ /*
+ * Reopen both files
+ */
+ fid1 = H5Fopen(FILE1, H5F_ACC_RDONLY, H5P_DEFAULT);
+ fid2 = H5Fopen(FILE2, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /*
+ * Mount second file under G in the first file.
+ */
+ H5Fmount(fid1, "/G", fid2, H5P_DEFAULT);
+
+ /*
+ * Access dataset D in the first file under /G/D name.
+ */
+ did = H5Dopen2(fid1, "/G/D", H5P_DEFAULT);
+ tid = H5Dget_type(did);
+ status = H5Dread(did, tid, H5S_ALL, H5S_ALL, H5P_DEFAULT, bm_out);
+
+ /*
+ * Print out the data.
+ */
+ for(i=0; i<NX; i++){
+ for(j=0; j<NY; j++)
+ printf(" %d", bm_out[i][j]);
+ printf("\n");
+ }
+
+ /*
+ * Close all identifers
+ */
+ H5Tclose(tid);
+ H5Dclose(did);
+
+ /*
+ * Unmounting second file
+ */
+ H5Funmount(fid1, "/G");
+
+ /*
+ * Close both files
+ */
+ H5Fclose(fid1);
+ H5Fclose(fid2);
+
+ return 0;
+}
+
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_rdwt.c b/privatemodules/nc4/share/hdf5_examples/c/h5_rdwt.c
new file mode 100644
index 0000000000000000000000000000000000000000..d5444e0b98aad62625ef9475c7e468d4ea33f482
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_rdwt.c
@@ -0,0 +1,53 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to write and read data in an existing
+ * dataset. It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+#define FILE "dset.h5"
+
+int main() {
+
+ hid_t file_id, dataset_id; /* identifiers */
+ herr_t status;
+ int i, j, dset_data[4][6];
+
+ /* Initialize the dataset. */
+ for (i = 0; i < 4; i++)
+ for (j = 0; j < 6; j++)
+ dset_data[i][j] = i * 6 + j + 1;
+
+ /* Open an existing file. */
+ file_id = H5Fopen(FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /* Open an existing dataset. */
+ dataset_id = H5Dopen2(file_id, "/dset", H5P_DEFAULT);
+
+ /* Write the dataset. */
+ status = H5Dwrite(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset_data);
+
+ status = H5Dread(dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
+ dset_data);
+
+ /* Close the dataset. */
+ status = H5Dclose(dataset_id);
+
+ /* Close the file. */
+ status = H5Fclose(file_id);
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_read.c b/privatemodules/nc4/share/hdf5_examples/c/h5_read.c
new file mode 100644
index 0000000000000000000000000000000000000000..6fe75be15d139650aaba0809cc964af079daaedd
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_read.c
@@ -0,0 +1,151 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example reads hyperslab from the SDS.h5 file
+ * created by h5_write.c program into two-dimensional
+ * plane of the three-dimensional array.
+ * Information about dataset in the SDS.h5 file is obtained.
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "SDS.h5"
+#define DATASETNAME "IntArray"
+#define NX_SUB 3 /* hyperslab dimensions */
+#define NY_SUB 4
+#define NX 7 /* output buffer dimensions */
+#define NY 7
+#define NZ 3
+#define RANK 2
+#define RANK_OUT 3
+
+int
+main (void)
+{
+ hid_t file, dataset; /* handles */
+ hid_t datatype, dataspace;
+ hid_t memspace;
+ H5T_class_t t_class; /* data type class */
+ H5T_order_t order; /* data order */
+ size_t size; /*
+ * size of the data element
+ * stored in file
+ */
+ hsize_t dimsm[3]; /* memory space dimensions */
+ hsize_t dims_out[2]; /* dataset dimensions */
+ herr_t status;
+
+ int data_out[NX][NY][NZ ]; /* output buffer */
+
+ hsize_t count[2]; /* size of the hyperslab in the file */
+ hsize_t offset[2]; /* hyperslab offset in the file */
+ hsize_t count_out[3]; /* size of the hyperslab in memory */
+ hsize_t offset_out[3]; /* hyperslab offset in memory */
+ int i, j, k, status_n, rank;
+
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) {
+ for (k = 0; k < NZ ; k++)
+ data_out[j][i][k] = 0;
+ }
+ }
+
+ /*
+ * Open the file and the dataset.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+ dataset = H5Dopen2(file, DATASETNAME, H5P_DEFAULT);
+
+ /*
+ * Get datatype and dataspace handles and then query
+ * dataset class, order, size, rank and dimensions.
+ */
+ datatype = H5Dget_type(dataset); /* datatype handle */
+ t_class = H5Tget_class(datatype);
+ if (t_class == H5T_INTEGER) printf("Data set has INTEGER type \n");
+ order = H5Tget_order(datatype);
+ if (order == H5T_ORDER_LE) printf("Little endian order \n");
+
+ size = H5Tget_size(datatype);
+ printf(" Data size is %d \n", (int)size);
+
+ dataspace = H5Dget_space(dataset); /* dataspace handle */
+ rank = H5Sget_simple_extent_ndims(dataspace);
+ status_n = H5Sget_simple_extent_dims(dataspace, dims_out, NULL);
+ printf("rank %d, dimensions %lu x %lu \n", rank,
+ (unsigned long)(dims_out[0]), (unsigned long)(dims_out[1]));
+
+ /*
+ * Define hyperslab in the dataset.
+ */
+ offset[0] = 1;
+ offset[1] = 2;
+ count[0] = NX_SUB;
+ count[1] = NY_SUB;
+ status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL,
+ count, NULL);
+
+ /*
+ * Define the memory dataspace.
+ */
+ dimsm[0] = NX;
+ dimsm[1] = NY;
+ dimsm[2] = NZ ;
+ memspace = H5Screate_simple(RANK_OUT,dimsm,NULL);
+
+ /*
+ * Define memory hyperslab.
+ */
+ offset_out[0] = 3;
+ offset_out[1] = 0;
+ offset_out[2] = 0;
+ count_out[0] = NX_SUB;
+ count_out[1] = NY_SUB;
+ count_out[2] = 1;
+ status = H5Sselect_hyperslab(memspace, H5S_SELECT_SET, offset_out, NULL,
+ count_out, NULL);
+
+ /*
+ * Read data from hyperslab in the file into the hyperslab in
+ * memory and display.
+ */
+ status = H5Dread(dataset, H5T_NATIVE_INT, memspace, dataspace,
+ H5P_DEFAULT, data_out);
+ for (j = 0; j < NX; j++) {
+ for (i = 0; i < NY; i++) printf("%d ", data_out[j][i][0]);
+ printf("\n");
+ }
+ /*
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0
+ * 3 4 5 6 0 0 0
+ * 4 5 6 7 0 0 0
+ * 5 6 7 8 0 0 0
+ * 0 0 0 0 0 0 0
+ */
+
+ /*
+ * Close/release resources.
+ */
+ H5Tclose(datatype);
+ H5Dclose(dataset);
+ H5Sclose(dataspace);
+ H5Sclose(memspace);
+ H5Fclose(file);
+
+ return 0;
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_ref2reg.c b/privatemodules/nc4/share/hdf5_examples/c/h5_ref2reg.c
new file mode 100644
index 0000000000000000000000000000000000000000..17ec724690b760cc5810454062a80665612d7b10
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_ref2reg.c
@@ -0,0 +1,210 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+/*
+ This program shows how to create, store and dereference references
+ to the dataset regions.
+
+ It creates a file and writes a two dimensional integer dataset
+ to it. Then it creates a dataset to store region references in. It
+ stores references to a hyperslab and 3 points selected (for the
+ integer dataset previously created).
+
+ It then reopens the references dataset, reads and dereferences the
+ region references, and then reads and displays the selected hyperslab
+ and selected elements data from the integer dataset.
+*/
+
+#include "hdf5.h"
+
+#define filename "REF_REG.h5"
+#define dsetnamev "MATRIX"
+#define dsetnamer "REGION_REFERENCES"
+
+int main(void)
+{
+ hid_t file_id; /* file identifier */
+ hid_t space_id; /* dataspace identifiers */
+ hid_t spacer_id;
+ hid_t dsetv_id; /*dataset identifiers*/
+ hid_t dsetr_id;
+ hsize_t dims[2] = {2,9};
+ hsize_t dimsr[1] = {2};
+ int rank = 2;
+ int rankr =1;
+ herr_t status;
+ hdset_reg_ref_t ref[2];
+ hdset_reg_ref_t ref_out[2];
+ int data[2][9] = {{1,1,2,3,3,4,5,5,6},{1,2,2,3,4,4,5,6,6}};
+ int data_out[2][9] = {{0,0,0,0,0,0,0,0,0},{0,0,0,0,0,0,0,0,0}};
+ hsize_t start[2];
+ hsize_t count[2];
+ hsize_t coord[2][3] = {{0, 0, 1}, {6, 0, 8}};
+ unsigned num_points = 3;
+ int i, j;
+ size_t name_size1, name_size2;
+ char buf1[10], buf2[10];
+
+ /*
+ * Create file with default file access and file creation properties.
+ */
+ file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create dataspace for datasets.
+ */
+ space_id = H5Screate_simple(rank, dims, NULL);
+ spacer_id = H5Screate_simple(rankr, dimsr, NULL);
+
+ /*
+ * Create integer dataset.
+ */
+ dsetv_id = H5Dcreate2(file_id, dsetnamev, H5T_NATIVE_INT, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write data to the dataset.
+ */
+ status = H5Dwrite(dsetv_id, H5T_NATIVE_INT, H5S_ALL , H5S_ALL, H5P_DEFAULT,data);
+ status = H5Dclose(dsetv_id);
+
+ /*
+ * Dataset with references.
+ */
+ dsetr_id = H5Dcreate2(file_id, dsetnamer, H5T_STD_REF_DSETREG, spacer_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create a reference to the hyperslab.
+ */
+ start[0] = 0;
+ start[1] = 3;
+ count[0] = 2;
+ count[1] = 3;
+ status = H5Sselect_hyperslab(space_id, H5S_SELECT_SET, start, NULL, count, NULL);
+ status = H5Rcreate(&ref[0], file_id, dsetnamev, H5R_DATASET_REGION, space_id);
+
+ /*
+ * Create a reference to elements selection.
+ */
+ status = H5Sselect_none(space_id);
+ status = H5Sselect_elements(space_id, H5S_SELECT_SET, num_points, (const hsize_t *)coord);
+ status = H5Rcreate(&ref[1], file_id, dsetnamev, H5R_DATASET_REGION, space_id);
+
+ /*
+ * Write dataset with the references.
+ */
+ status = H5Dwrite(dsetr_id, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT,ref);
+
+ /*
+ * Close all objects.
+ */
+ status = H5Sclose(space_id);
+ status = H5Sclose(spacer_id);
+ status = H5Dclose(dsetr_id);
+ status = H5Fclose(file_id);
+
+ /*
+ * Reopen the file to read selections back.
+ */
+ file_id = H5Fopen(filename, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /*
+ * Reopen the dataset with object references and read references
+ * to the buffer.
+ */
+ dsetr_id = H5Dopen2(file_id, dsetnamer, H5P_DEFAULT);
+
+ status = H5Dread(dsetr_id, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, ref_out);
+
+ /*
+ * Dereference the first reference.
+ */
+ dsetv_id = H5Rdereference(dsetr_id, H5R_DATASET_REGION, &ref_out[0]);
+ /*
+ * Get name of the dataset the first region reference points to
+ * using H5Rget_name
+ */
+ name_size1 = H5Rget_name(dsetr_id, H5R_DATASET_REGION, &ref_out[0], (char*)buf1, 10);
+ printf(" Dataset's name (returned by H5Rget_name) the reference points to is %s, name length is %d\n", buf1, (int)name_size1);
+ /*
+ * Get name of the dataset the first region reference points to
+ * using H5Iget_name
+ */
+ name_size2 = H5Iget_name(dsetv_id, (char*)buf2, 10);
+ printf(" Dataset's name (returned by H5Iget_name) the reference points to is %s, name length is %d\n", buf2, (int)name_size2);
+
+ space_id = H5Rget_region(dsetr_id, H5R_DATASET_REGION,&ref_out[0]);
+
+ /*
+ * Read and display hyperslab selection from the dataset.
+ */
+
+ status = H5Dread(dsetv_id, H5T_NATIVE_INT, H5S_ALL, space_id,
+ H5P_DEFAULT, data_out);
+ printf("Selected hyperslab: ");
+ for (i = 0; i <= 1; i++)
+ {
+ printf("\n");
+ for (j = 0; j <= 8; j++)
+ printf("%d ", data_out[i][j]);
+ }
+ printf("\n");
+
+ /*
+ * Close dataspace and the dataset.
+ */
+ status = H5Sclose(space_id);
+ status = H5Dclose(dsetv_id);
+
+ /*
+ * Initialize data_out array again to get point selection.
+ */
+ for (i = 0; i <= 1; i++)
+ for (j = 0; j <= 8; j++)
+ data_out[i][j] = 0;
+
+ /*
+ * Dereference the second reference.
+ */
+ dsetv_id = H5Rdereference(dsetr_id, H5R_DATASET_REGION, &ref_out[1]);
+ space_id = H5Rget_region(dsetv_id, H5R_DATASET_REGION,&ref_out[1]);
+
+ /*
+ * Read selected data from the dataset.
+ */
+
+ status = H5Dread(dsetv_id, H5T_NATIVE_INT, H5S_ALL, space_id,
+ H5P_DEFAULT, data_out);
+ printf("Selected points: ");
+ for (i = 0; i <= 1; i++)
+ {
+ printf("\n");
+ for (j = 0; j <= 8; j++)
+ printf("%d ", data_out[i][j]);
+ }
+ printf("\n");
+
+ /*
+ * Close dataspace and the dataset.
+ */
+ status = H5Sclose(space_id);
+ status = H5Dclose(dsetv_id);
+ status = H5Dclose(dsetr_id);
+ status = H5Fclose(file_id);
+
+ return 0;
+}
+
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_reference.c b/privatemodules/nc4/share/hdf5_examples/c/h5_reference.c
new file mode 100644
index 0000000000000000000000000000000000000000..31aa2cf409f4ab43fa0688b4e7c09bf5de8df16d
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_reference.c
@@ -0,0 +1,149 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+ /*
+ * This program illustrates how references to objects can be used.
+ * Program creates a dataset and a group in a file. It also creates
+ * second dataset, and references to the first dataset and the group
+ * are stored in it.
+ * Program reopens the file and reads dataset with the references.
+ * References are used to open the objects. Information about the
+ * objects is displayed.
+ */
+
+#include <stdlib.h>
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "refere.h5"
+
+int
+main(void) {
+ hid_t fid; /* File, group, datasets, datatypes */
+ hid_t gid_a; /* and dataspaces identifiers */
+ hid_t did_b, sid_b, tid_b;
+ hid_t did_r, tid_r, sid_r;
+ H5O_type_t obj_type;
+ herr_t status;
+
+ hobj_ref_t *wbuf; /* buffer to write to disk */
+ hobj_ref_t *rbuf; /* buffer to read from disk */
+
+
+ hsize_t dim_r[1];
+ hsize_t dim_b[2];
+
+ /*
+ * Create a file using default properties.
+ */
+ fid = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create group "A" in the file.
+ */
+ gid_a = H5Gcreate2(fid, "A", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create dataset "B" in the file.
+ */
+ dim_b[0] = 2;
+ dim_b[1] = 6;
+ sid_b = H5Screate_simple(2, dim_b, NULL);
+ did_b = H5Dcreate2(fid, "B", H5T_NATIVE_FLOAT, sid_b, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create dataset "R" to store references to the objects "A" and "B".
+ */
+ dim_r[0] = 2;
+ sid_r = H5Screate_simple(1, dim_r, NULL);
+ tid_r = H5Tcopy(H5T_STD_REF_OBJ);
+ did_r = H5Dcreate2(fid, "R", tid_r, sid_r, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Allocate write and read buffers.
+ */
+ wbuf = (hobj_ref_t *)malloc(sizeof(hobj_ref_t) * 2);
+ rbuf = (hobj_ref_t *)malloc(sizeof(hobj_ref_t) * 2);
+
+ /*
+ * Create references to the group "A" and dataset "B"
+ * and store them in the wbuf.
+ */
+ H5Rcreate(&wbuf[0], fid, "A", H5R_OBJECT, -1);
+ H5Rcreate(&wbuf[1], fid, "B", H5R_OBJECT, -1);
+
+ /*
+ * Write dataset R using default transfer properties.
+ */
+ status = H5Dwrite(did_r, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
+
+ /*
+ * Close all objects.
+ */
+ H5Gclose(gid_a);
+
+ H5Sclose(sid_b);
+ H5Dclose(did_b);
+
+ H5Tclose(tid_r);
+ H5Sclose(sid_r);
+ H5Dclose(did_r);
+
+ H5Fclose(fid);
+
+ /*
+ * Reopen the file.
+ */
+ fid = H5Fopen(H5FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT);
+
+ /*
+ * Open and read dataset "R".
+ */
+ did_r = H5Dopen2(fid, "R", H5P_DEFAULT);
+ status = H5Dread(did_r, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
+
+ /*
+ * Find the type of referenced objects.
+ */
+ status = H5Rget_obj_type2(did_r, H5R_OBJECT, &rbuf[0], &obj_type);
+ if(obj_type == H5O_TYPE_GROUP)
+ printf("First dereferenced object is a group. \n");
+
+ status = H5Rget_obj_type2(did_r, H5R_OBJECT, &rbuf[1], &obj_type);
+ if(obj_type == H5O_TYPE_DATASET)
+ printf("Second dereferenced object is a dataset. \n");
+
+ /*
+ * Get datatype of the dataset "B"
+ */
+ did_b = H5Rdereference(did_r, H5R_OBJECT, &rbuf[1]);
+ tid_b = H5Dget_type(did_b);
+ if(H5Tequal(tid_b, H5T_NATIVE_FLOAT))
+ printf("Datatype of the dataset is H5T_NATIVE_FLOAT.\n");
+ printf("\n");
+
+ /*
+ * Close all objects and free memory buffers.
+ */
+ H5Dclose(did_r);
+ H5Dclose(did_b);
+ H5Tclose(tid_b);
+ H5Fclose(fid);
+ free(rbuf);
+ free(wbuf);
+
+ return 0;
+ }
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_select.c b/privatemodules/nc4/share/hdf5_examples/c/h5_select.c
new file mode 100644
index 0000000000000000000000000000000000000000..ceb9c2c663890ebe88d835449fce63dde9c68777
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_select.c
@@ -0,0 +1,334 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This program shows how the H5Sselect_hyperslab and H5Sselect_elements
+ * functions are used to write selected data from memory to the file.
+ * Program takes 48 elements from the linear buffer and writes them into
+ * the matrix using 3x2 blocks, (4,3) stride and (2,4) count.
+ * Then four elements of the matrix are overwritten with the new values and
+ * file is closed. Program reopens the file and selects the union of two
+ * hyperslabs in the dataset in the file. Then it reads the selection into the
+ * memory dataset preserving the shape of the selection.
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "Select.h5"
+
+#define MSPACE1_RANK 1 /* Rank of the first dataset in memory */
+#define MSPACE1_DIM 50 /* Dataset size in memory */
+
+#define MSPACE2_RANK 1 /* Rank of the second dataset in memory */
+#define MSPACE2_DIM 4 /* Dataset size in memory */
+
+#define FSPACE_RANK 2 /* Dataset rank as it is stored in the file */
+#define FSPACE_DIM1 8 /* Dimension sizes of the dataset as it is
+ stored in the file */
+#define FSPACE_DIM2 12
+
+ /* We will read dataset back from the file
+ to the dataset in memory with these
+ dataspace parameters. */
+#define MSPACE_RANK 2
+#define MSPACE_DIM1 8
+#define MSPACE_DIM2 9
+
+#define NPOINTS 4 /* Number of points that will be selected
+ and overwritten */
+int
+main (void)
+{
+
+ hid_t file, dataset; /* File and dataset identifiers */
+ hid_t mid1, mid2, mid, fid; /* Dataspace identifiers */
+ hid_t plist; /* Dataset property list identifier */
+
+ hsize_t dim1[] = {MSPACE1_DIM}; /* Dimension size of the first dataset
+ (in memory) */
+ hsize_t dim2[] = {MSPACE2_DIM}; /* Dimension size of the second dataset
+ (in memory */
+ hsize_t fdim[] = {FSPACE_DIM1, FSPACE_DIM2};
+ /* Dimension sizes of the dataset (on disk) */
+ hsize_t mdim[] = {MSPACE_DIM1, MSPACE_DIM2}; /* Dimension sizes of the
+ dataset in memory when we
+ read selection from the
+ dataset on the disk */
+
+ hsize_t start[2]; /* Start of hyperslab */
+ hsize_t stride[2]; /* Stride of hyperslab */
+ hsize_t count[2]; /* Block count */
+ hsize_t block[2]; /* Block sizes */
+
+ hsize_t coord[NPOINTS][FSPACE_RANK]; /* Array to store selected points
+ from the file dataspace */
+ herr_t ret;
+ unsigned i,j;
+ int fillvalue = 0; /* Fill value for the dataset */
+
+ int matrix_out[MSPACE_DIM1][MSPACE_DIM2]; /* Buffer to read from the
+ dataset */
+ int vector[MSPACE1_DIM];
+ int values[] = {53, 59, 61, 67}; /* New values to be written */
+
+ /*
+ * Buffers' initialization.
+ */
+ vector[0] = vector[MSPACE1_DIM - 1] = -1;
+ for(i = 1; i < MSPACE1_DIM - 1; i++)
+ vector[i] = i;
+
+ /*
+ * Create a file.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Create property list for a dataset and set up fill values.
+ */
+ plist = H5Pcreate(H5P_DATASET_CREATE);
+ ret = H5Pset_fill_value(plist, H5T_NATIVE_INT, &fillvalue);
+
+ /*
+ * Create dataspace for the dataset in the file.
+ */
+ fid = H5Screate_simple(FSPACE_RANK, fdim, NULL);
+
+ /*
+ * Create dataset in the file. Notice that creation
+ * property list plist is used.
+ */
+ dataset = H5Dcreate2(file, "Matrix in file", H5T_NATIVE_INT, fid, H5P_DEFAULT, plist, H5P_DEFAULT);
+
+ /*
+ * Select hyperslab for the dataset in the file, using 3x2 blocks,
+ * (4,3) stride and (2,4) count starting at the position (0,1).
+ */
+ start[0] = 0; start[1] = 1;
+ stride[0] = 4; stride[1] = 3;
+ count[0] = 2; count[1] = 4;
+ block[0] = 3; block[1] = 2;
+ ret = H5Sselect_hyperslab(fid, H5S_SELECT_SET, start, stride, count, block);
+
+ /*
+ * Create dataspace for the first dataset.
+ */
+ mid1 = H5Screate_simple(MSPACE1_RANK, dim1, NULL);
+
+ /*
+ * Select hyperslab.
+ * We will use 48 elements of the vector buffer starting at the second element.
+ * Selected elements are 1 2 3 . . . 48
+ */
+ start[0] = 1;
+ stride[0] = 1;
+ count[0] = 48;
+ block[0] = 1;
+ ret = H5Sselect_hyperslab(mid1, H5S_SELECT_SET, start, stride, count, block);
+
+ /*
+ * Write selection from the vector buffer to the dataset in the file.
+ *
+ * File dataset should look like this:
+ * 0 1 2 0 3 4 0 5 6 0 7 8
+ * 0 9 10 0 11 12 0 13 14 0 15 16
+ * 0 17 18 0 19 20 0 21 22 0 23 24
+ * 0 0 0 0 0 0 0 0 0 0 0 0
+ * 0 25 26 0 27 28 0 29 30 0 31 32
+ * 0 33 34 0 35 36 0 37 38 0 39 40
+ * 0 41 42 0 43 44 0 45 46 0 47 48
+ * 0 0 0 0 0 0 0 0 0 0 0 0
+ */
+ ret = H5Dwrite(dataset, H5T_NATIVE_INT, mid1, fid, H5P_DEFAULT, vector);
+
+ /*
+ * Reset the selection for the file dataspace fid.
+ */
+ ret = H5Sselect_none(fid);
+
+ /*
+ * Create dataspace for the second dataset.
+ */
+ mid2 = H5Screate_simple(MSPACE2_RANK, dim2, NULL);
+
+ /*
+ * Select sequence of NPOINTS points in the file dataspace.
+ */
+ coord[0][0] = 0; coord[0][1] = 0;
+ coord[1][0] = 3; coord[1][1] = 3;
+ coord[2][0] = 3; coord[2][1] = 5;
+ coord[3][0] = 5; coord[3][1] = 6;
+
+ ret = H5Sselect_elements(fid, H5S_SELECT_SET, NPOINTS, (const hsize_t *)coord);
+
+ /*
+ * Write new selection of points to the dataset.
+ */
+ ret = H5Dwrite(dataset, H5T_NATIVE_INT, mid2, fid, H5P_DEFAULT, values);
+
+ /*
+ * File dataset should look like this:
+ * 53 1 2 0 3 4 0 5 6 0 7 8
+ * 0 9 10 0 11 12 0 13 14 0 15 16
+ * 0 17 18 0 19 20 0 21 22 0 23 24
+ * 0 0 0 59 0 61 0 0 0 0 0 0
+ * 0 25 26 0 27 28 0 29 30 0 31 32
+ * 0 33 34 0 35 36 67 37 38 0 39 40
+ * 0 41 42 0 43 44 0 45 46 0 47 48
+ * 0 0 0 0 0 0 0 0 0 0 0 0
+ *
+ */
+
+ /*
+ * Close memory file and memory dataspaces.
+ */
+ ret = H5Sclose(mid1);
+ ret = H5Sclose(mid2);
+ ret = H5Sclose(fid);
+
+ /*
+ * Close dataset.
+ */
+ ret = H5Dclose(dataset);
+
+ /*
+ * Close the file.
+ */
+ ret = H5Fclose(file);
+
+ /*
+ * Open the file.
+ */
+ file = H5Fopen(H5FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /*
+ * Open the dataset.
+ */
+ dataset = H5Dopen2(file, "Matrix in file", H5P_DEFAULT);
+
+ /*
+ * Get dataspace of the open dataset.
+ */
+ fid = H5Dget_space(dataset);
+
+ /*
+ * Select first hyperslab for the dataset in the file. The following
+ * elements are selected:
+ * 10 0 11 12
+ * 18 0 19 20
+ * 0 59 0 61
+ *
+ */
+ start[0] = 1; start[1] = 2;
+ block[0] = 1; block[1] = 1;
+ stride[0] = 1; stride[1] = 1;
+ count[0] = 3; count[1] = 4;
+ ret = H5Sselect_hyperslab(fid, H5S_SELECT_SET, start, stride, count, block);
+
+ /*
+ * Add second selected hyperslab to the selection.
+ * The following elements are selected:
+ * 19 20 0 21 22
+ * 0 61 0 0 0
+ * 27 28 0 29 30
+ * 35 36 67 37 38
+ * 43 44 0 45 46
+ * 0 0 0 0 0
+ * Note that two hyperslabs overlap. Common elements are:
+ * 19 20
+ * 0 61
+ */
+ start[0] = 2; start[1] = 4;
+ block[0] = 1; block[1] = 1;
+ stride[0] = 1; stride[1] = 1;
+ count[0] = 6; count[1] = 5;
+ ret = H5Sselect_hyperslab(fid, H5S_SELECT_OR, start, stride, count, block);
+
+ /*
+ * Create memory dataspace.
+ */
+ mid = H5Screate_simple(MSPACE_RANK, mdim, NULL);
+
+ /*
+ * Select two hyperslabs in memory. Hyperslabs has the same
+ * size and shape as the selected hyperslabs for the file dataspace.
+ */
+ start[0] = 0; start[1] = 0;
+ block[0] = 1; block[1] = 1;
+ stride[0] = 1; stride[1] = 1;
+ count[0] = 3; count[1] = 4;
+ ret = H5Sselect_hyperslab(mid, H5S_SELECT_SET, start, stride, count, block);
+
+ start[0] = 1; start[1] = 2;
+ block[0] = 1; block[1] = 1;
+ stride[0] = 1; stride[1] = 1;
+ count[0] = 6; count[1] = 5;
+ ret = H5Sselect_hyperslab(mid, H5S_SELECT_OR, start, stride, count, block);
+
+ /*
+ * Initialize data buffer.
+ */
+ for (i = 0; i < MSPACE_DIM1; i++) {
+ for (j = 0; j < MSPACE_DIM2; j++)
+ matrix_out[i][j] = 0;
+ }
+ /*
+ * Read data back to the buffer matrix_out.
+ */
+ ret = H5Dread(dataset, H5T_NATIVE_INT, mid, fid,
+ H5P_DEFAULT, matrix_out);
+
+ /*
+ * Display the result. Memory dataset is:
+ *
+ * 10 0 11 12 0 0 0 0 0
+ * 18 0 19 20 0 21 22 0 0
+ * 0 59 0 61 0 0 0 0 0
+ * 0 0 27 28 0 29 30 0 0
+ * 0 0 35 36 67 37 38 0 0
+ * 0 0 43 44 0 45 46 0 0
+ * 0 0 0 0 0 0 0 0 0
+ * 0 0 0 0 0 0 0 0 0
+ */
+ for(i = 0; i < MSPACE_DIM1; i++) {
+ for(j = 0; j < MSPACE_DIM2; j++)
+ printf("%3d ", matrix_out[i][j]);
+ printf("\n");
+ }
+
+ /*
+ * Close memory file and memory dataspaces.
+ */
+ ret = H5Sclose(mid);
+ ret = H5Sclose(fid);
+
+ /*
+ * Close dataset.
+ */
+ ret = H5Dclose(dataset);
+
+ /*
+ * Close property list
+ */
+ ret = H5Pclose(plist);
+
+ /*
+ * Close the file.
+ */
+ ret = H5Fclose(file);
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_shared_mesg.c b/privatemodules/nc4/share/hdf5_examples/c/h5_shared_mesg.c
new file mode 100644
index 0000000000000000000000000000000000000000..0c7f2f0cf4cda22af910c30044fe16bb7d10d21b
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_shared_mesg.c
@@ -0,0 +1,327 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This program illustrates the usage of HDF5's implicit message sharing
+ * feature, which can be used to save space when the same messages are
+ * used many times in a file.
+ *
+ * This example creates a standard file using file creation property lists
+ * to control which messages are shared. Messages that can be shared are
+ * datatypes, dataspaces, attributes, fill values, and filter pipelines.
+ *
+ */
+
+#include <stdlib.h>
+
+#include "hdf5.h"
+
+#define NUM_DATASETS 40
+const char* DSETNAME[] = {
+ "dataset0", "dataset1",
+ "dataset2", "dataset3",
+ "dataset4", "dataset5",
+ "dataset6", "dataset7",
+ "dataset8", "dataset9",
+ "dataset10", "dataset11",
+ "dataset12", "dataset13",
+ "dataset14", "dataset15",
+ "dataset16", "dataset17",
+ "dataset18", "dataset19",
+ "dataset20", "dataset21",
+ "dataset22", "dataset23",
+ "dataset24", "dataset25",
+ "dataset26", "dataset27",
+ "dataset28", "dataset29",
+ "dataset30", "dataset31",
+ "dataset32", "dataset33",
+ "dataset34", "dataset35",
+ "dataset36", "dataset37",
+ "dataset38", "dataset39",
+ NULL
+};
+
+herr_t create_standard_file(const char *filename, hid_t fcpl);
+
+/*-------------------------------------------------------------------------
+ * Function: main
+ *
+ * Purpose: Enables shared messages using File Creation Property Lists
+ * and creates files using these settings.
+ *
+ *-------------------------------------------------------------------------
+ */
+int main(void)
+{
+ hid_t fcpl_id;
+ herr_t ret;
+
+ /* Create a file creation property list */
+ fcpl_id = H5Pcreate(H5P_FILE_CREATE);
+ if(fcpl_id < 0) goto error;
+
+ /* The file creation property list is the default list right now.
+ * Create a file using it (this is the same as creating a file with
+ * H5P_DEFAULT). Implicit shared messages will be disabled.
+ */
+ ret = create_standard_file("default_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+ /* There are five kinds of messages that can be shared: datatypes,
+ * dataspaces, attributes, fill values, and filter pipelines.
+ * Shared messages are stored in up to five "indexes," where each
+ * index can contain one or more types of message. Using more indexes
+ * will result in more overhead for sharing, but can also provide
+ * more "tunability" and may affect caching performance.
+ */
+ /* To begin with, use only one index. */
+ ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
+ if(ret < 0) goto error;
+
+ /* Each index has a "minimum message size" for a message of that
+ * type to be shared. Since sharing a message creates some overhead,
+ * this is to prevent this overhead for very small messages when little
+ * space would be saved by sharing them anyway.
+ * If the content of the file isn't known beforehand, it's probably best
+ * to set the minimum size "high"; over 100 or 200 bytes. If the content
+ * of the file is known, this value can be used to trade space saved for
+ * performance lost. The smaller this value is, the more messages will
+ * be shared, so the more overhead will be incurred.
+ * This value is in bytes. A shared message involves about 30 bytes of
+ * overhead. Note that even messages that are only written once will
+ * require this overhead (since they "might" be shared in the future),
+ * so setting the minimum size too low may result in a file actually growing
+ * in size.
+ * For this example case, we'll set the minimum sharing size to be small
+ * since we know that every message the "standard" file uses will be
+ * repeated many times.
+ */
+ /* The other property that each index has is the kinds of messages that
+ * it holds. For the simple case, we'll put every message that could be
+ * shared in this single index.
+ */
+ ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 40);
+ if(ret < 0) goto error;
+
+ /* The other property that can be set for shared messages is the
+ * list/B-tree cutoff for the indexes.
+ * Each shared message index beins life as a simple list of messages
+ * and becomes a B-tree when "too many" messages are written to it.
+ * This keeps the indexes simple when only a few messages are shared,
+ * but allows them to scale for many messages. If many messages are
+ * deleted from the B-tree, it scales back down into a list.
+ * A "resonable" setting for maximum list size and minimum btree size
+ * depends on what kinds of messages will be stored in the file.
+ * These numbers are the same for all indexes in a file.
+ * We'll guess at some numbers, though we could just as easily have kept
+ * the default values. The first value is the maximum list size, the
+ * second the minimum B-tree size.
+ */
+ ret = H5Pset_shared_mesg_phase_change(fcpl_id, 30, 20);
+ if(ret < 0) goto error;
+
+ /* Now create a file with this property list. After the FCPL is used,
+ * everything is automatic; messages will be shared and this will be
+ * completely transparent to the user. Even if the file is closed
+ * and re-opened, this settings will be saved and applied to messages
+ * written later.
+ */
+ ret = create_standard_file("one_index_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+ /* Now try some variations on this. The FCPL hasn't been closed, so
+ * we don't need to re-create it.
+ * For instance, if we set the index to only share very large
+ * messages, none of the messages we write will qualify and the file
+ * will be about the same size as a normal file (with just a little extra
+ * overhead).
+ */
+ ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 1000);
+ if(ret < 0) goto error;
+
+ ret = create_standard_file("only_huge_mesgs_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+
+ /* Or, suppose we only wanted to shared dataspaces and
+ * attributes (which might make sense if we were going to use committed
+ * datatypes). We could change the flags on the index:
+ */
+ ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_SDSPACE_FLAG | H5O_SHMESG_ATTR_FLAG, 40);
+ if(ret < 0) goto error;
+
+ ret = create_standard_file("only_dspaces_and_attrs_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+
+ /* We could create a second index and put attributes in it to separate them
+ * from datatypes and dataspaces (and then run some performance metrics to
+ * see whether this improved caching performance).
+ */
+ ret = H5Pset_shared_mesg_nindexes(fcpl_id, 2);
+ if(ret < 0) goto error;
+ ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_DTYPE_FLAG | H5O_SHMESG_SDSPACE_FLAG, 40);
+ if(ret < 0) goto error;
+ ret = H5Pset_shared_mesg_index(fcpl_id, 1, H5O_SHMESG_ATTR_FLAG, 40);
+ if(ret < 0) goto error;
+
+ ret = create_standard_file("separate_indexes_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+ /* We can try twiddling the "phase change" values and see what it does to
+ * the file size. Since there's only a few different messages (two
+ * datatypes, two dataspaces, and one attribute), using smaller lists will
+ * save some space.
+ */
+ ret = H5Pset_shared_mesg_nindexes(fcpl_id, 1);
+ if(ret < 0) goto error;
+ ret = H5Pset_shared_mesg_index(fcpl_id, 0, H5O_SHMESG_ALL_FLAG, 40);
+ if(ret < 0) goto error;
+
+ ret = H5Pset_shared_mesg_phase_change(fcpl_id, 5, 0);
+ if(ret < 0) goto error;
+
+ ret = create_standard_file("small_lists_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+ /* Or we could create indexes that are never lists, but are created as
+ * B-trees. We do this by setting the "maximum list size" to zero.
+ */
+ ret = H5Pset_shared_mesg_phase_change(fcpl_id, 0, 0);
+ if(ret < 0) goto error;
+
+ ret = create_standard_file("btrees_file.h5", fcpl_id);
+ if(ret < 0) goto error;
+
+
+ /* Obviously there are a lot more permutations of these options possible.
+ * Performance will often be a tradeoff of speed for space, but will
+ * depend a great deal on the specific application. If performance is
+ * important, the best thing to do is to play with these settings to find
+ * the ones that work best for you.
+ * Please let The HDF Group (help@hdfgroup.org) know what you find!
+ */
+
+
+ /* Close the property list */
+ ret = H5Pclose(fcpl_id);
+ if(ret < 0) goto error;
+ return 0;
+
+error:
+ return -1;
+}
+
+/*-------------------------------------------------------------------------
+ * Function: create_standard_file
+ *
+ * Purpose: A helper functon for the example. Creates an HDF5 file
+ * with many repeated messages using the file creation
+ * property list FCPL.
+ *
+ * This function only uses datatypes, dataspaces, and
+ * attributes. Fill values and filter pipelines can also
+ * be shared in the same way (i.e., by enabling sharing in
+ * the FCPL and writing the same message more than once).
+ *-------------------------------------------------------------------------
+ */
+herr_t
+create_standard_file(const char *filename, hid_t fcpl_id)
+{
+ hid_t file_id=-1;
+ hid_t type_id=-1, temp_type_id=-1;
+ hsize_t dims[] = {10, 9, 8, 7, 6, 5, 4, 3, 2, 1};
+ hid_t space_id=-1;
+ hid_t attr_type_id = -1;
+ hid_t attr_space_id = -1;
+ int attr_data[] = {1,2,3,4,5,6,7,8,9,0};
+ hid_t dset_id=-1;
+ hid_t attr_id=-1;
+ int x;
+ herr_t ret;
+
+ /* Create the file */
+ file_id = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl_id, H5P_DEFAULT);
+ if(file_id < 0) goto error;
+
+ /* Create the datatype we'll be using. Generally, sharing messages
+ * is most useful when the message is complex and takes more space on
+ * disk, so this type will be an array type rather than an atomic type.
+ * However, any type can be shared.
+ */
+ temp_type_id = H5Tarray_create2(H5T_NATIVE_INT, 2, dims);
+ if(temp_type_id < 0) goto error;
+ type_id = H5Tarray_create2(temp_type_id, 2, dims);
+ if(type_id < 0) goto error;
+ ret = H5Tclose(temp_type_id);
+ if(ret < 0) goto error;
+
+ /* Create the dataspace we'll be using.
+ * Again, create a more complex dataspace so that more space will
+ * be saved when we share it.
+ */
+ space_id = H5Screate_simple(10, dims, dims);
+ if(space_id < 0) goto error;
+
+ /* Create a datatype and dataspace for the attributes we'll be creating.
+ * The datatype will be a single integer, and each attribute will hold
+ * 10 integers.
+ */
+ attr_type_id = H5Tcopy(H5T_NATIVE_INT);
+ if(attr_type_id < 0) goto error;
+ attr_space_id = H5Screate_simple(1, dims, dims);
+ if(attr_space_id < 0) goto error;
+
+
+ /* Begin using the messages many times. Do this by creating datasets
+ * that use this datatype, dataspace, and have this attribute.
+ */
+ for(x = 0; x < NUM_DATASETS; ++x) {
+ /* Create a dataset */
+ dset_id = H5Dcreate2(file_id, DSETNAME[x], type_id, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ if(dset_id < 0) goto error;
+
+ /* Create an attribute on the dataset */
+ attr_id = H5Acreate2(dset_id, "attr_name", attr_type_id, attr_space_id, H5P_DEFAULT, H5P_DEFAULT);
+ if(attr_id < 0) goto error;
+
+ /* Write data to the attribute */
+ ret = H5Awrite(attr_id, H5T_NATIVE_INT, attr_data);
+ if(ret < 0) goto error;
+
+ ret = H5Aclose(attr_id);
+ if(ret < 0) goto error;
+ ret = H5Dclose(dset_id);
+ if(ret < 0) goto error;
+ }
+
+ /* Close all open IDs */
+ ret = H5Tclose(attr_type_id);
+ if(ret < 0) goto error;
+ ret = H5Sclose(attr_space_id);
+ if(ret < 0) goto error;
+ ret = H5Tclose(type_id);
+ if(ret < 0) goto error;
+ ret = H5Sclose(space_id);
+ if(ret < 0) goto error;
+ ret = H5Fclose(file_id);
+ if(ret < 0) goto error;
+
+ return 0;
+
+error:
+ return -1;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_subset.c b/privatemodules/nc4/share/hdf5_examples/c/h5_subset.c
new file mode 100644
index 0000000000000000000000000000000000000000..66872ea9fad1041007022a2f10de396f02336da0
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_subset.c
@@ -0,0 +1,153 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example illustrates how to read/write a subset of data (a slab)
+ * from/to a dataset in an HDF5 file. It is used in the HDF5 Tutorial.
+ */
+
+#include "hdf5.h"
+
+#define FILE "subset.h5"
+#define DATASETNAME "IntArray"
+#define RANK 2
+
+#define DIM0_SUB 3 /* subset dimensions */
+#define DIM1_SUB 4
+
+
+#define DIM0 8 /* size of dataset */
+#define DIM1 10
+
+int
+main (void)
+{
+ hsize_t dims[2], dimsm[2];
+ int data[DIM0][DIM1]; /* data to write */
+ int sdata[DIM0_SUB][DIM1_SUB]; /* subset to write */
+ int rdata[DIM0][DIM1]; /* buffer for read */
+
+ hid_t file_id, dataset_id; /* handles */
+ hid_t dataspace_id, memspace_id;
+
+ herr_t status;
+
+ hsize_t count[2]; /* size of subset in the file */
+ hsize_t offset[2]; /* subset offset in the file */
+ hsize_t stride[2];
+ hsize_t block[2];
+ int i, j;
+
+
+ /*****************************************************************
+ * Create a new file with default creation and access properties.*
+ * Then create a dataset and write data to it and close the file *
+ * and dataset. *
+ *****************************************************************/
+
+ file_id = H5Fcreate (FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ dims[0] = DIM0;
+ dims[1] = DIM1;
+ dataspace_id = H5Screate_simple (RANK, dims, NULL);
+
+ dataset_id = H5Dcreate2 (file_id, DATASETNAME, H5T_STD_I32BE, dataspace_id,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+
+ for (j = 0; j < DIM0; j++) {
+ for (i = 0; i < DIM1; i++)
+ if (i< (DIM1/2))
+ data[j][i] = 1;
+ else
+ data[j][i] = 2;
+ }
+
+ status = H5Dwrite (dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, data);
+
+ printf ("\nData Written to File:\n");
+ for (i = 0; i<DIM0; i++){
+ for (j = 0; j<DIM1; j++)
+ printf (" %i", data[i][j]);
+ printf ("\n");
+ }
+ status = H5Sclose (dataspace_id);
+ status = H5Dclose (dataset_id);
+ status = H5Fclose (file_id);
+
+
+ /*****************************************************
+ * Reopen the file and dataset and write a subset of *
+ * values to the dataset.
+ *****************************************************/
+
+ file_id = H5Fopen (FILE, H5F_ACC_RDWR, H5P_DEFAULT);
+ dataset_id = H5Dopen2 (file_id, DATASETNAME, H5P_DEFAULT);
+
+ /* Specify size and shape of subset to write. */
+
+ offset[0] = 1;
+ offset[1] = 2;
+
+ count[0] = DIM0_SUB;
+ count[1] = DIM1_SUB;
+
+ stride[0] = 1;
+ stride[1] = 1;
+
+ block[0] = 1;
+ block[1] = 1;
+
+ /* Create memory space with size of subset. Get file dataspace
+ and select subset from file dataspace. */
+
+ dimsm[0] = DIM0_SUB;
+ dimsm[1] = DIM1_SUB;
+ memspace_id = H5Screate_simple (RANK, dimsm, NULL);
+
+ dataspace_id = H5Dget_space (dataset_id);
+ status = H5Sselect_hyperslab (dataspace_id, H5S_SELECT_SET, offset,
+ stride, count, block);
+
+ /* Write a subset of data to the dataset, then read the
+ entire dataset back from the file. */
+
+ printf ("\nWrite subset to file specifying:\n");
+ printf (" offset=1x2 stride=1x1 count=3x4 block=1x1\n");
+ for (j = 0; j < DIM0_SUB; j++) {
+ for (i = 0; i < DIM1_SUB; i++)
+ sdata[j][i] = 5;
+ }
+
+ status = H5Dwrite (dataset_id, H5T_NATIVE_INT, memspace_id,
+ dataspace_id, H5P_DEFAULT, sdata);
+
+ status = H5Dread (dataset_id, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
+ H5P_DEFAULT, rdata);
+
+ printf ("\nData in File after Subset is Written:\n");
+ for (i = 0; i<DIM0; i++){
+ for (j = 0; j<DIM1; j++)
+ printf (" %i", rdata[i][j]);
+ printf ("\n");
+ }
+
+ status = H5Sclose (memspace_id);
+ status = H5Sclose (dataspace_id);
+ status = H5Dclose (dataset_id);
+ status = H5Fclose (file_id);
+
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/c/h5_write.c b/privatemodules/nc4/share/hdf5_examples/c/h5_write.c
new file mode 100644
index 0000000000000000000000000000000000000000..93d40ea728efb180a7a5e73b184204a3e9efa93f
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/h5_write.c
@@ -0,0 +1,97 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * This example writes data to the HDF5 file.
+ * Data conversion is performed during write operation.
+ */
+
+#include "hdf5.h"
+
+#define H5FILE_NAME "SDS.h5"
+#define DATASETNAME "IntArray"
+#define NX 5 /* dataset dimensions */
+#define NY 6
+#define RANK 2
+
+int
+main (void)
+{
+ hid_t file, dataset; /* file and dataset handles */
+ hid_t datatype, dataspace; /* handles */
+ hsize_t dimsf[2]; /* dataset dimensions */
+ herr_t status;
+ int data[NX][NY]; /* data to write */
+ int i, j;
+
+ /*
+ * Data and output buffer initialization.
+ */
+ for(j = 0; j < NX; j++)
+ for(i = 0; i < NY; i++)
+ data[j][i] = i + j;
+ /*
+ * 0 1 2 3 4 5
+ * 1 2 3 4 5 6
+ * 2 3 4 5 6 7
+ * 3 4 5 6 7 8
+ * 4 5 6 7 8 9
+ */
+
+ /*
+ * Create a new file using H5F_ACC_TRUNC access,
+ * default file creation properties, and default file
+ * access properties.
+ */
+ file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Describe the size of the array and create the data space for fixed
+ * size dataset.
+ */
+ dimsf[0] = NX;
+ dimsf[1] = NY;
+ dataspace = H5Screate_simple(RANK, dimsf, NULL);
+
+ /*
+ * Define datatype for the data in the file.
+ * We will store little endian INT numbers.
+ */
+ datatype = H5Tcopy(H5T_NATIVE_INT);
+ status = H5Tset_order(datatype, H5T_ORDER_LE);
+
+ /*
+ * Create a new dataset within the file using defined dataspace and
+ * datatype and default dataset creation properties.
+ */
+ dataset = H5Dcreate2(file, DATASETNAME, datatype, dataspace,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /*
+ * Write the data to the dataset using default transfer properties.
+ */
+ status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
+
+ /*
+ * Close/release resources.
+ */
+ H5Sclose(dataspace);
+ H5Tclose(datatype);
+ H5Dclose(dataset);
+ H5Fclose(file);
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/c/ph5example.c b/privatemodules/nc4/share/hdf5_examples/c/ph5example.c
new file mode 100644
index 0000000000000000000000000000000000000000..7a41db205ab2881b20d026b389002e1f01cc83db
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/ph5example.c
@@ -0,0 +1,1132 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+/*
+ * Example of using the parallel HDF5 library to access datasets.
+ * Last revised: April 24, 2001.
+ *
+ * This program contains two parts. In the first part, the mpi processes
+ * collectively create a new parallel HDF5 file and create two fixed
+ * dimension datasets in it. Then each process writes a hyperslab into
+ * each dataset in an independent mode. All processes collectively
+ * close the datasets and the file.
+ * In the second part, the processes collectively open the created file
+ * and the two datasets in it. Then each process reads a hyperslab from
+ * each dataset in an independent mode and prints them out.
+ * All processes collectively close the datasets and the file.
+ *
+ * The need of requirement of parallel file prefix is that in general
+ * the current working directory in which compiling is done, is not suitable
+ * for parallel I/O and there is no standard pathname for parallel file
+ * systems. In some cases, the parallel file name may even needs some
+ * parallel file type prefix such as: "pfs:/GF/...". Therefore, this
+ * example requires an explicite parallel file prefix. See the usage
+ * for more detail.
+ */
+
+#include <assert.h>
+#include "hdf5.h"
+#include <string.h>
+#include <stdlib.h>
+
+#ifdef H5_HAVE_PARALLEL
+/* Temporary source code */
+#define FAIL -1
+/* temporary code end */
+
+/* Define some handy debugging shorthands, routines, ... */
+/* debugging tools */
+#define MESG(x)\
+ if (verbose) printf("%s\n", x);\
+
+#define MPI_BANNER(mesg)\
+ {printf("--------------------------------\n");\
+ printf("Proc %d: ", mpi_rank); \
+ printf("*** %s\n", mesg);\
+ printf("--------------------------------\n");}
+
+#define SYNC(comm)\
+ {MPI_BANNER("doing a SYNC"); MPI_Barrier(comm); MPI_BANNER("SYNC DONE");}
+/* End of Define some handy debugging shorthands, routines, ... */
+
+/* Constants definitions */
+/* 24 is a multiple of 2, 3, 4, 6, 8, 12. Neat for parallel tests. */
+#define SPACE1_DIM1 24
+#define SPACE1_DIM2 24
+#define SPACE1_RANK 2
+#define DATASETNAME1 "Data1"
+#define DATASETNAME2 "Data2"
+#define DATASETNAME3 "Data3"
+/* hyperslab layout styles */
+#define BYROW 1 /* divide into slabs of rows */
+#define BYCOL 2 /* divide into blocks of columns */
+
+#define PARAPREFIX "HDF5_PARAPREFIX" /* file prefix environment variable name */
+
+
+/* dataset data type. Int's can be easily octo dumped. */
+typedef int DATATYPE;
+
+/* global variables */
+int nerrors = 0; /* errors count */
+#ifndef PATH_MAX
+#define PATH_MAX 512
+#endif /* !PATH_MAX */
+char testfiles[2][PATH_MAX];
+
+
+int mpi_size, mpi_rank; /* mpi variables */
+
+/* option flags */
+int verbose = 0; /* verbose, default as no. */
+int doread=1; /* read test */
+int dowrite=1; /* write test */
+int docleanup=1; /* cleanup */
+
+/* Prototypes */
+void slab_set(hsize_t start[], hsize_t count[], hsize_t stride[], int mode);
+void dataset_fill(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE * dataset);
+void dataset_print(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE * dataset);
+int dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE *dataset, DATATYPE *original);
+void phdf5writeInd(char *filename);
+void phdf5readInd(char *filename);
+void phdf5writeAll(char *filename);
+void phdf5readAll(char *filename);
+void test_split_comm_access(char filenames[][PATH_MAX]);
+int parse_options(int argc, char **argv);
+void usage(void);
+int mkfilenames(char *prefix);
+void cleanup(void);
+
+
+/*
+ * Setup the dimensions of the hyperslab.
+ * Two modes--by rows or by columns.
+ * Assume dimension rank is 2.
+ */
+void
+slab_set(hsize_t start[], hsize_t count[], hsize_t stride[], int mode)
+{
+ switch (mode){
+ case BYROW:
+ /* Each process takes a slabs of rows. */
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = SPACE1_DIM1/mpi_size;
+ count[1] = SPACE1_DIM2;
+ start[0] = mpi_rank*count[0];
+ start[1] = 0;
+ break;
+ case BYCOL:
+ /* Each process takes a block of columns. */
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = SPACE1_DIM1;
+ count[1] = SPACE1_DIM2/mpi_size;
+ start[0] = 0;
+ start[1] = mpi_rank*count[1];
+ break;
+ default:
+ /* Unknown mode. Set it to cover the whole dataset. */
+ printf("unknown slab_set mode (%d)\n", mode);
+ stride[0] = 1;
+ stride[1] = 1;
+ count[0] = SPACE1_DIM1;
+ count[1] = SPACE1_DIM2;
+ start[0] = 0;
+ start[1] = 0;
+ break;
+ }
+}
+
+
+/*
+ * Fill the dataset with trivial data for testing.
+ * Assume dimension rank is 2 and data is stored contiguous.
+ */
+void
+dataset_fill(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE * dataset)
+{
+ DATATYPE *dataptr = dataset;
+ hsize_t i, j;
+
+ /* put some trivial data in the data_array */
+ for (i=0; i < count[0]; i++){
+ for (j=0; j < count[1]; j++){
+ *dataptr++ = (i*stride[0]+start[0])*100 + (j*stride[1]+start[1]+1);
+ }
+ }
+}
+
+
+/*
+ * Print the content of the dataset.
+ */
+void dataset_print(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE * dataset)
+{
+ DATATYPE *dataptr = dataset;
+ hsize_t i, j;
+
+ /* print the slab read */
+ for (i=0; i < count[0]; i++){
+ printf("Row %lu: ", (unsigned long)(i*stride[0]+start[0]));
+ for (j=0; j < count[1]; j++){
+ printf("%03d ", *dataptr++);
+ }
+ printf("\n");
+ }
+}
+
+
+/*
+ * Print the content of the dataset.
+ */
+int dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], DATATYPE *dataset, DATATYPE *original)
+{
+#define MAX_ERR_REPORT 10 /* Maximum number of errors reported */
+
+ hsize_t i, j;
+ int nerr;
+
+ /* print it if verbose */
+ if (verbose)
+ dataset_print(start, count, stride, dataset);
+
+ nerr = 0;
+ for (i=0; i < count[0]; i++){
+ for (j=0; j < count[1]; j++){
+ if (*dataset++ != *original++){
+ nerr++;
+ if (nerr <= MAX_ERR_REPORT){
+ printf("Dataset Verify failed at [%lu][%lu](row %lu, col %lu): expect %d, got %d\n",
+ (unsigned long)i, (unsigned long)j,
+ (unsigned long)(i*stride[0]+start[0]), (unsigned long)(j*stride[1]+start[1]),
+ *(dataset-1), *(original-1));
+ }
+ }
+ }
+ }
+ if (nerr > MAX_ERR_REPORT)
+ printf("[more errors ...]\n");
+ if (nerr)
+ printf("%d errors found in dataset_vrfy\n", nerr);
+ return(nerr);
+}
+
+
+/*
+ * Example of using the parallel HDF5 library to create two datasets
+ * in one HDF5 files with parallel MPIO access support.
+ * The Datasets are of sizes (number-of-mpi-processes x DIM1) x DIM2.
+ * Each process controls only a slab of size DIM1 x DIM2 within each
+ * dataset.
+ */
+
+void
+phdf5writeInd(char *filename)
+{
+ hid_t fid1; /* HDF5 file IDs */
+ hid_t acc_tpl1; /* File access templates */
+ hid_t sid1; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims1[SPACE1_RANK] =
+ {SPACE1_DIM1,SPACE1_DIM2}; /* dataspace dim sizes */
+ DATATYPE data_array1[SPACE1_DIM1][SPACE1_DIM2]; /* data buffer */
+
+ hsize_t start[SPACE1_RANK]; /* for hyperslab setting */
+ hsize_t count[SPACE1_RANK], stride[SPACE1_RANK]; /* for hyperslab setting */
+
+ herr_t ret; /* Generic return value */
+
+ MPI_Comm comm = MPI_COMM_WORLD;
+ MPI_Info info = MPI_INFO_NULL;
+
+ if (verbose)
+ printf("Independent write test on file %s\n", filename);
+
+ /* -------------------
+ * START AN HDF5 FILE
+ * -------------------*/
+ /* setup file access template with parallel IO access. */
+ acc_tpl1 = H5Pcreate (H5P_FILE_ACCESS);
+ assert(acc_tpl1 != FAIL);
+ MESG("H5Pcreate access succeed");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(acc_tpl1, comm, info);
+ assert(ret != FAIL);
+ MESG("H5Pset_fapl_mpio succeed");
+
+ /* create the file collectively */
+ fid1 = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl1);
+ assert(fid1 != FAIL);
+ MESG("H5Fcreate succeed");
+
+ /* Release file-access template */
+ ret = H5Pclose(acc_tpl1);
+ assert(ret != FAIL);
+
+
+ /* --------------------------
+ * Define the dimensions of the overall datasets
+ * and the slabs local to the MPI process.
+ * ------------------------- */
+ /* setup dimensionality object */
+ sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
+ assert (sid1 != FAIL);
+ MESG("H5Screate_simple succeed");
+
+
+ /* create a dataset collectively */
+ dataset1 = H5Dcreate2(fid1, DATASETNAME1, H5T_NATIVE_INT, sid1,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ assert(dataset1 != FAIL);
+ MESG("H5Dcreate2 succeed");
+
+ /* create another dataset collectively */
+ dataset2 = H5Dcreate2(fid1, DATASETNAME2, H5T_NATIVE_INT, sid1,
+ H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ assert(dataset2 != FAIL);
+ MESG("H5Dcreate2 succeed");
+
+
+
+ /* set up dimensions of the slab this process accesses */
+ start[0] = mpi_rank*SPACE1_DIM1/mpi_size;
+ start[1] = 0;
+ count[0] = SPACE1_DIM1/mpi_size;
+ count[1] = SPACE1_DIM2;
+ stride[0] = 1;
+ stride[1] =1;
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* put some trivial data in the data_array */
+ dataset_fill(start, count, stride, &data_array1[0][0]);
+ MESG("data_array initialized");
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ MESG("H5Dget_space succeed");
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+ MESG("H5Sset_hyperslab succeed");
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* write data independently */
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ H5P_DEFAULT, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dwrite succeed");
+
+ /* write data independently */
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ H5P_DEFAULT, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dwrite succeed");
+
+ /* release dataspace ID */
+ H5Sclose(file_dataspace);
+
+ /* close dataset collectively */
+ ret=H5Dclose(dataset1);
+ assert(ret != FAIL);
+ MESG("H5Dclose1 succeed");
+ ret=H5Dclose(dataset2);
+ assert(ret != FAIL);
+ MESG("H5Dclose2 succeed");
+
+ /* release all IDs created */
+ H5Sclose(sid1);
+
+ /* close the file collectively */
+ H5Fclose(fid1);
+}
+
+/* Example of using the parallel HDF5 library to read a dataset */
+void
+phdf5readInd(char *filename)
+{
+ hid_t fid1; /* HDF5 file IDs */
+ hid_t acc_tpl1; /* File access templates */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ DATATYPE data_array1[SPACE1_DIM1][SPACE1_DIM2]; /* data buffer */
+ DATATYPE data_origin1[SPACE1_DIM1][SPACE1_DIM2]; /* expected data buffer */
+
+ hsize_t start[SPACE1_RANK]; /* for hyperslab setting */
+ hsize_t count[SPACE1_RANK], stride[SPACE1_RANK]; /* for hyperslab setting */
+
+ herr_t ret; /* Generic return value */
+
+ MPI_Comm comm = MPI_COMM_WORLD;
+ MPI_Info info = MPI_INFO_NULL;
+
+ if (verbose)
+ printf("Independent read test on file %s\n", filename);
+
+ /* setup file access template */
+ acc_tpl1 = H5Pcreate (H5P_FILE_ACCESS);
+ assert(acc_tpl1 != FAIL);
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(acc_tpl1, comm, info);
+ assert(ret != FAIL);
+
+
+ /* open the file collectively */
+ fid1=H5Fopen(filename,H5F_ACC_RDWR,acc_tpl1);
+ assert(fid1 != FAIL);
+
+ /* Release file-access template */
+ ret=H5Pclose(acc_tpl1);
+ assert(ret != FAIL);
+
+ /* open the dataset1 collectively */
+ dataset1 = H5Dopen2(fid1, DATASETNAME1, H5P_DEFAULT);
+ assert(dataset1 != FAIL);
+
+ /* open another dataset collectively */
+ dataset2 = H5Dopen2(fid1, DATASETNAME1, H5P_DEFAULT);
+ assert(dataset2 != FAIL);
+
+
+ /* set up dimensions of the slab this process accesses */
+ start[0] = mpi_rank*SPACE1_DIM1/mpi_size;
+ start[1] = 0;
+ count[0] = SPACE1_DIM1/mpi_size;
+ count[1] = SPACE1_DIM2;
+ stride[0] = 1;
+ stride[1] =1;
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* fill dataset with test data */
+ dataset_fill(start, count, stride, &data_origin1[0][0]);
+
+ /* read data independently */
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ H5P_DEFAULT, data_array1);
+ assert(ret != FAIL);
+
+ /* verify the read data with original expected data */
+ ret = dataset_vrfy(start, count, stride, &data_array1[0][0], &data_origin1[0][0]);
+ assert(ret != FAIL);
+
+ /* read data independently */
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ H5P_DEFAULT, data_array1);
+ assert(ret != FAIL);
+
+ /* verify the read data with original expected data */
+ ret = dataset_vrfy(start, count, stride, &data_array1[0][0], &data_origin1[0][0]);
+ assert(ret == 0);
+
+ /* close dataset collectively */
+ ret=H5Dclose(dataset1);
+ assert(ret != FAIL);
+ ret=H5Dclose(dataset2);
+ assert(ret != FAIL);
+
+ /* release all IDs created */
+ H5Sclose(file_dataspace);
+
+ /* close the file collectively */
+ H5Fclose(fid1);
+}
+
+
+/*
+ * Example of using the parallel HDF5 library to create two datasets
+ * in one HDF5 file with collective parallel access support.
+ * The Datasets are of sizes (number-of-mpi-processes x DIM1) x DIM2.
+ * Each process controls only a slab of size DIM1 x DIM2 within each
+ * dataset. [Note: not so yet. Datasets are of sizes DIM1xDIM2 and
+ * each process controls a hyperslab within.]
+ */
+
+void
+phdf5writeAll(char *filename)
+{
+ hid_t fid1; /* HDF5 file IDs */
+ hid_t acc_tpl1; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t sid1; /* Dataspace ID */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ hsize_t dims1[SPACE1_RANK] =
+ {SPACE1_DIM1,SPACE1_DIM2}; /* dataspace dim sizes */
+ DATATYPE data_array1[SPACE1_DIM1][SPACE1_DIM2]; /* data buffer */
+
+ hsize_t start[SPACE1_RANK]; /* for hyperslab setting */
+ hsize_t count[SPACE1_RANK], stride[SPACE1_RANK]; /* for hyperslab setting */
+
+ herr_t ret; /* Generic return value */
+
+ MPI_Comm comm = MPI_COMM_WORLD;
+ MPI_Info info = MPI_INFO_NULL;
+
+ if (verbose)
+ printf("Collective write test on file %s\n", filename);
+
+ /* -------------------
+ * START AN HDF5 FILE
+ * -------------------*/
+ /* setup file access template with parallel IO access. */
+ acc_tpl1 = H5Pcreate (H5P_FILE_ACCESS);
+ assert(acc_tpl1 != FAIL);
+ MESG("H5Pcreate access succeed");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(acc_tpl1, comm, info);
+ assert(ret != FAIL);
+ MESG("H5Pset_fapl_mpio succeed");
+
+ /* create the file collectively */
+ fid1=H5Fcreate(filename,H5F_ACC_TRUNC,H5P_DEFAULT,acc_tpl1);
+ assert(fid1 != FAIL);
+ MESG("H5Fcreate succeed");
+
+ /* Release file-access template */
+ ret=H5Pclose(acc_tpl1);
+ assert(ret != FAIL);
+
+
+ /* --------------------------
+ * Define the dimensions of the overall datasets
+ * and create the dataset
+ * ------------------------- */
+ /* setup dimensionality object */
+ sid1 = H5Screate_simple (SPACE1_RANK, dims1, NULL);
+ assert (sid1 != FAIL);
+ MESG("H5Screate_simple succeed");
+
+
+ /* create a dataset collectively */
+ dataset1 = H5Dcreate2(fid1, DATASETNAME1, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ assert(dataset1 != FAIL);
+ MESG("H5Dcreate2 succeed");
+
+ /* create another dataset collectively */
+ dataset2 = H5Dcreate2(fid1, DATASETNAME2, H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+ assert(dataset2 != FAIL);
+ MESG("H5Dcreate2 2 succeed");
+
+ /*
+ * Set up dimensions of the slab this process accesses.
+ */
+
+ /* Dataset1: each process takes a block of rows. */
+ slab_set(start, count, stride, BYROW);
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ MESG("H5Dget_space succeed");
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+ MESG("H5Sset_hyperslab succeed");
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* fill the local slab with some trivial data */
+ dataset_fill(start, count, stride, &data_array1[0][0]);
+ MESG("data_array initialized");
+ if (verbose){
+ MESG("data_array created");
+ dataset_print(start, count, stride, &data_array1[0][0]);
+ }
+
+ /* set up the collective transfer properties list */
+ xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ assert(xfer_plist != FAIL);
+ ret=H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ assert(ret != FAIL);
+ MESG("H5Pcreate xfer succeed");
+
+ /* write data collectively */
+ ret = H5Dwrite(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ xfer_plist, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dwrite succeed");
+
+ /* release all temporary handles. */
+ /* Could have used them for dataset2 but it is cleaner */
+ /* to create them again.*/
+ H5Sclose(file_dataspace);
+ H5Sclose(mem_dataspace);
+ H5Pclose(xfer_plist);
+
+ /* Dataset2: each process takes a block of columns. */
+ slab_set(start, count, stride, BYCOL);
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* put some trivial data in the data_array */
+ dataset_fill(start, count, stride, &data_array1[0][0]);
+ MESG("data_array initialized");
+ if (verbose){
+ MESG("data_array created");
+ dataset_print(start, count, stride, &data_array1[0][0]);
+ }
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ MESG("H5Dget_space succeed");
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+ MESG("H5Sset_hyperslab succeed");
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* fill the local slab with some trivial data */
+ dataset_fill(start, count, stride, &data_array1[0][0]);
+ MESG("data_array initialized");
+ if (verbose){
+ MESG("data_array created");
+ dataset_print(start, count, stride, &data_array1[0][0]);
+ }
+
+ /* set up the collective transfer properties list */
+ xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ assert(xfer_plist != FAIL);
+ ret=H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ assert(ret != FAIL);
+ MESG("H5Pcreate xfer succeed");
+
+ /* write data independently */
+ ret = H5Dwrite(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ xfer_plist, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dwrite succeed");
+
+ /* release all temporary handles. */
+ H5Sclose(file_dataspace);
+ H5Sclose(mem_dataspace);
+ H5Pclose(xfer_plist);
+
+
+ /*
+ * All writes completed. Close datasets collectively
+ */
+ ret=H5Dclose(dataset1);
+ assert(ret != FAIL);
+ MESG("H5Dclose1 succeed");
+ ret=H5Dclose(dataset2);
+ assert(ret != FAIL);
+ MESG("H5Dclose2 succeed");
+
+ /* release all IDs created */
+ H5Sclose(sid1);
+
+ /* close the file collectively */
+ H5Fclose(fid1);
+}
+
+/*
+ * Example of using the parallel HDF5 library to read two datasets
+ * in one HDF5 file with collective parallel access support.
+ * The Datasets are of sizes (number-of-mpi-processes x DIM1) x DIM2.
+ * Each process controls only a slab of size DIM1 x DIM2 within each
+ * dataset. [Note: not so yet. Datasets are of sizes DIM1xDIM2 and
+ * each process controls a hyperslab within.]
+ */
+
+void
+phdf5readAll(char *filename)
+{
+ hid_t fid1; /* HDF5 file IDs */
+ hid_t acc_tpl1; /* File access templates */
+ hid_t xfer_plist; /* Dataset transfer properties list */
+ hid_t file_dataspace; /* File dataspace ID */
+ hid_t mem_dataspace; /* memory dataspace ID */
+ hid_t dataset1, dataset2; /* Dataset ID */
+ DATATYPE data_array1[SPACE1_DIM1][SPACE1_DIM2]; /* data buffer */
+ DATATYPE data_origin1[SPACE1_DIM1][SPACE1_DIM2]; /* expected data buffer */
+
+ hsize_t start[SPACE1_RANK]; /* for hyperslab setting */
+ hsize_t count[SPACE1_RANK], stride[SPACE1_RANK]; /* for hyperslab setting */
+
+ herr_t ret; /* Generic return value */
+
+ MPI_Comm comm = MPI_COMM_WORLD;
+ MPI_Info info = MPI_INFO_NULL;
+
+ if (verbose)
+ printf("Collective read test on file %s\n", filename);
+
+ /* -------------------
+ * OPEN AN HDF5 FILE
+ * -------------------*/
+ /* setup file access template with parallel IO access. */
+ acc_tpl1 = H5Pcreate (H5P_FILE_ACCESS);
+ assert(acc_tpl1 != FAIL);
+ MESG("H5Pcreate access succeed");
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(acc_tpl1, comm, info);
+ assert(ret != FAIL);
+ MESG("H5Pset_fapl_mpio succeed");
+
+ /* open the file collectively */
+ fid1=H5Fopen(filename,H5F_ACC_RDWR,acc_tpl1);
+ assert(fid1 != FAIL);
+ MESG("H5Fopen succeed");
+
+ /* Release file-access template */
+ ret=H5Pclose(acc_tpl1);
+ assert(ret != FAIL);
+
+
+ /* --------------------------
+ * Open the datasets in it
+ * ------------------------- */
+ /* open the dataset1 collectively */
+ dataset1 = H5Dopen2(fid1, DATASETNAME1, H5P_DEFAULT);
+ assert(dataset1 != FAIL);
+ MESG("H5Dopen2 succeed");
+
+ /* open another dataset collectively */
+ dataset2 = H5Dopen2(fid1, DATASETNAME1, H5P_DEFAULT);
+ assert(dataset2 != FAIL);
+ MESG("H5Dopen2 2 succeed");
+
+ /*
+ * Set up dimensions of the slab this process accesses.
+ */
+
+ /* Dataset1: each process takes a block of columns. */
+ slab_set(start, count, stride, BYCOL);
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ MESG("H5Dget_space succeed");
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+ MESG("H5Sset_hyperslab succeed");
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* fill dataset with test data */
+ dataset_fill(start, count, stride, &data_origin1[0][0]);
+ MESG("data_array initialized");
+ if (verbose){
+ MESG("data_array created");
+ dataset_print(start, count, stride, &data_array1[0][0]);
+ }
+
+ /* set up the collective transfer properties list */
+ xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ assert(xfer_plist != FAIL);
+ ret=H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ assert(ret != FAIL);
+ MESG("H5Pcreate xfer succeed");
+
+ /* read data collectively */
+ ret = H5Dread(dataset1, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ xfer_plist, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dread succeed");
+
+ /* verify the read data with original expected data */
+ ret = dataset_vrfy(start, count, stride, &data_array1[0][0], &data_origin1[0][0]);
+ assert(ret != FAIL);
+
+ /* release all temporary handles. */
+ /* Could have used them for dataset2 but it is cleaner */
+ /* to create them again.*/
+ H5Sclose(file_dataspace);
+ H5Sclose(mem_dataspace);
+ H5Pclose(xfer_plist);
+
+ /* Dataset2: each process takes a block of rows. */
+ slab_set(start, count, stride, BYROW);
+if (verbose)
+ printf("start[]=(%lu,%lu), count[]=(%lu,%lu), total datapoints=%lu\n",
+ (unsigned long)start[0], (unsigned long)start[1],
+ (unsigned long)count[0], (unsigned long)count[1],
+ (unsigned long)(count[0]*count[1]));
+
+ /* create a file dataspace independently */
+ file_dataspace = H5Dget_space (dataset1);
+ assert(file_dataspace != FAIL);
+ MESG("H5Dget_space succeed");
+ ret=H5Sselect_hyperslab(file_dataspace, H5S_SELECT_SET, start, stride,
+ count, NULL);
+ assert(ret != FAIL);
+ MESG("H5Sset_hyperslab succeed");
+
+ /* create a memory dataspace independently */
+ mem_dataspace = H5Screate_simple (SPACE1_RANK, count, NULL);
+ assert (mem_dataspace != FAIL);
+
+ /* fill dataset with test data */
+ dataset_fill(start, count, stride, &data_origin1[0][0]);
+ MESG("data_array initialized");
+ if (verbose){
+ MESG("data_array created");
+ dataset_print(start, count, stride, &data_array1[0][0]);
+ }
+
+ /* set up the collective transfer properties list */
+ xfer_plist = H5Pcreate (H5P_DATASET_XFER);
+ assert(xfer_plist != FAIL);
+ ret=H5Pset_dxpl_mpio(xfer_plist, H5FD_MPIO_COLLECTIVE);
+ assert(ret != FAIL);
+ MESG("H5Pcreate xfer succeed");
+
+ /* read data independently */
+ ret = H5Dread(dataset2, H5T_NATIVE_INT, mem_dataspace, file_dataspace,
+ xfer_plist, data_array1);
+ assert(ret != FAIL);
+ MESG("H5Dread succeed");
+
+ /* verify the read data with original expected data */
+ ret = dataset_vrfy(start, count, stride, &data_array1[0][0], &data_origin1[0][0]);
+ assert(ret != FAIL);
+
+ /* release all temporary handles. */
+ H5Sclose(file_dataspace);
+ H5Sclose(mem_dataspace);
+ H5Pclose(xfer_plist);
+
+
+ /*
+ * All reads completed. Close datasets collectively
+ */
+ ret=H5Dclose(dataset1);
+ assert(ret != FAIL);
+ MESG("H5Dclose1 succeed");
+ ret=H5Dclose(dataset2);
+ assert(ret != FAIL);
+ MESG("H5Dclose2 succeed");
+
+ /* close the file collectively */
+ H5Fclose(fid1);
+}
+
+/*
+ * test file access by communicator besides COMM_WORLD.
+ * Split COMM_WORLD into two, one (even_comm) contains the original
+ * processes of even ranks. The other (odd_comm) contains the original
+ * processes of odd ranks. Processes in even_comm creates a file, then
+ * cloose it, using even_comm. Processes in old_comm just do a barrier
+ * using odd_comm. Then they all do a barrier using COMM_WORLD.
+ * If the file creation and cloose does not do correct collective action
+ * according to the communicator argument, the processes will freeze up
+ * sooner or later due to barrier mixed up.
+ */
+void
+test_split_comm_access(char filenames[][PATH_MAX])
+{
+ MPI_Comm comm;
+ MPI_Info info = MPI_INFO_NULL;
+ int color, mrc;
+ int newrank, newprocs;
+ hid_t fid; /* file IDs */
+ hid_t acc_tpl; /* File access properties */
+ herr_t ret; /* generic return value */
+
+ if (verbose)
+ printf("Independent write test on file %s %s\n",
+ filenames[0], filenames[1]);
+
+ color = mpi_rank%2;
+ mrc = MPI_Comm_split (MPI_COMM_WORLD, color, mpi_rank, &comm);
+ assert(mrc==MPI_SUCCESS);
+ MPI_Comm_size(comm,&newprocs);
+ MPI_Comm_rank(comm,&newrank);
+
+ if (color){
+ /* odd-rank processes */
+ mrc = MPI_Barrier(comm);
+ assert(mrc==MPI_SUCCESS);
+ }else{
+ /* even-rank processes */
+ /* setup file access template */
+ acc_tpl = H5Pcreate (H5P_FILE_ACCESS);
+ assert(acc_tpl != FAIL);
+
+ /* set Parallel access with communicator */
+ ret = H5Pset_fapl_mpio(acc_tpl, comm, info);
+ assert(ret != FAIL);
+
+ /* create the file collectively */
+ fid=H5Fcreate(filenames[color],H5F_ACC_TRUNC,H5P_DEFAULT,acc_tpl);
+ assert(fid != FAIL);
+ MESG("H5Fcreate succeed");
+
+ /* Release file-access template */
+ ret=H5Pclose(acc_tpl);
+ assert(ret != FAIL);
+
+ ret=H5Fclose(fid);
+ assert(ret != FAIL);
+ }
+ if (mpi_rank == 0){
+ mrc = MPI_File_delete(filenames[color], info);
+ assert(mrc==MPI_SUCCESS);
+ }
+}
+
+/*
+ * Show command usage
+ */
+void
+usage(void)
+{
+ printf("Usage: testphdf5 [-f <prefix>] [-r] [-w] [-v]\n");
+ printf("\t-f\tfile prefix for parallel test files.\n");
+ printf("\t \te.g. pfs:/PFS/myname\n");
+ printf("\t \tcan be set via $" PARAPREFIX ".\n");
+ printf("\t \tDefault is current directory.\n");
+ printf("\t-c\tno cleanup\n");
+ printf("\t-r\tno read\n");
+ printf("\t-w\tno write\n");
+ printf("\t-v\tverbose on\n");
+ printf("\tdefault do write then read\n");
+ printf("\n");
+}
+
+
+/*
+ * compose the test filename with the prefix supplied.
+ * return code: 0 if no error
+ * 1 otherwise.
+ */
+int
+mkfilenames(char *prefix)
+{
+ int i, n;
+ size_t strsize;
+
+ /* filename will be prefix/ParaEgN.h5 where N is 0 to 9. */
+ /* So, string must be big enough to hold the prefix, / and 10 more chars */
+ /* and the terminating null. */
+ strsize = strlen(prefix) + 12;
+ if (strsize > PATH_MAX){
+ printf("File prefix too long; Use a short path name.\n");
+ return(1);
+ }
+ n = sizeof(testfiles)/sizeof(testfiles[0]);
+ if (n > 9){
+ printf("Warning: Too many entries in testfiles. "
+ "Need to adjust the code to accommodate the large size.\n");
+ }
+ for (i=0; i<n; i++){
+ sprintf(testfiles[i], "%s/ParaEg%d.h5", prefix, i);
+ }
+ return(0);
+
+}
+
+
+/*
+ * parse the command line options
+ */
+int
+parse_options(int argc, char **argv){
+ int i, n;
+
+ /* initialize testfiles to nulls */
+ n = sizeof(testfiles)/sizeof(testfiles[0]);
+ for (i=0; i<n; i++){
+ testfiles[i][0] = '\0';
+ }
+
+ while (--argc){
+ if (**(++argv) != '-'){
+ break;
+ }else{
+ switch(*(*argv+1)){
+ case 'f': ++argv;
+ if (--argc < 1){
+ usage();
+ nerrors++;
+ return(1);
+ }
+ if (mkfilenames(*argv)){
+ nerrors++;
+ return(1);
+ }
+ break;
+ case 'c': docleanup = 0; /* no cleanup */
+ break;
+ case 'r': doread = 0;
+ break;
+ case 'w': dowrite = 0;
+ break;
+ case 'v': verbose = 1;
+ break;
+ default: usage();
+ nerrors++;
+ return(1);
+ }
+ }
+ }
+
+ /* check the file prefix */
+ if (testfiles[0][0] == '\0'){
+ /* try get it from environment variable HDF5_PARAPREFIX */
+ char *env;
+ char *env_default = "."; /* default to current directory */
+ if ((env=getenv(PARAPREFIX))==NULL){
+ env = env_default;
+ }
+ mkfilenames(env);
+ }
+ return(0);
+}
+
+
+/*
+ * cleanup test files created
+ */
+void
+cleanup(void)
+{
+ int i, n;
+
+ n = sizeof(testfiles)/sizeof(testfiles[0]);
+ for (i=0; i<n; i++){
+ MPI_File_delete(testfiles[i], MPI_INFO_NULL);
+ }
+}
+
+
+/* Main Program */
+int
+main(int argc, char **argv)
+{
+ int mpi_namelen;
+ char mpi_name[MPI_MAX_PROCESSOR_NAME];
+ int i, n;
+
+ MPI_Init(&argc,&argv);
+ MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
+ MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
+ MPI_Get_processor_name(mpi_name,&mpi_namelen);
+ /* Make sure datasets can be divided into equal chunks by the processes */
+ if ((SPACE1_DIM1 % mpi_size) || (SPACE1_DIM2 % mpi_size)){
+ printf("DIM1(%d) and DIM2(%d) must be multiples of processes (%d)\n",
+ SPACE1_DIM1, SPACE1_DIM2, mpi_size);
+ nerrors++;
+ goto finish;
+ }
+
+ if (parse_options(argc, argv) != 0)
+ goto finish;
+
+ /* show test file names */
+ if (mpi_rank == 0){
+ n = sizeof(testfiles)/sizeof(testfiles[0]);
+ printf("Parallel test files are:\n");
+ for (i=0; i<n; i++){
+ printf(" %s\n", testfiles[i]);
+ }
+ }
+
+ if (dowrite){
+ MPI_BANNER("testing PHDF5 dataset using split communicators...");
+ test_split_comm_access(testfiles);
+ MPI_BANNER("testing PHDF5 dataset independent write...");
+ phdf5writeInd(testfiles[0]);
+ MPI_BANNER("testing PHDF5 dataset collective write...");
+ phdf5writeAll(testfiles[1]);
+ }
+ if (doread){
+ MPI_BANNER("testing PHDF5 dataset independent read...");
+ phdf5readInd(testfiles[0]);
+ MPI_BANNER("testing PHDF5 dataset collective read...");
+ phdf5readAll(testfiles[1]);
+ }
+
+ if (!(dowrite || doread)){
+ usage();
+ nerrors++;
+ }
+
+finish:
+ if (mpi_rank == 0){ /* only process 0 reports */
+ if (nerrors)
+ printf("***PHDF5 tests detected %d errors***\n", nerrors);
+ else{
+ printf("===================================\n");
+ printf("PHDF5 tests finished with no errors\n");
+ printf("===================================\n");
+ }
+ }
+ if (docleanup)
+ cleanup();
+ MPI_Finalize();
+
+ return(nerrors);
+}
+
+#else /* H5_HAVE_PARALLEL */
+/* dummy program since H5_HAVE_PARALLE is not configured in */
+int
+main(void)
+{
+printf("No PHDF5 example because parallel is not configured in\n");
+return(0);
+}
+#endif /* H5_HAVE_PARALLEL */
diff --git a/privatemodules/nc4/share/hdf5_examples/c/run-c-ex.sh b/privatemodules/nc4/share/hdf5_examples/c/run-c-ex.sh
new file mode 100755
index 0000000000000000000000000000000000000000..415d2d0dc316c05727a08724478736f736a1f801
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/c/run-c-ex.sh
@@ -0,0 +1,142 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+#
+# This file: run-c-ex.sh
+# Written by: Larry Knox
+# Date: May 11, 2010
+#
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+# #
+# This script will compile and run the c examples from source files installed #
+# in .../share/hdf5_examples/c using h5cc or h5pc. The order for running #
+# programs with RunTest in the MAIN section below is taken from the Makefile. #
+# The order is important since some of the test programs use data files created #
+# by earlier test programs. Any future additions should be placed accordingly. #
+# #
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+
+# Initializations
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+# Where the tool is installed.
+# default is relative path to installed location of the tools
+prefix="${prefix:-../../../}"
+PARALLEL=no # Am I in parallel mode?
+AR="ar"
+RANLIB="ranlib"
+if [ "$PARALLEL" = no ]; then
+ H5TOOL="h5cc" # The tool name
+else
+ H5TOOL="h5pcc" # The tool name
+fi
+H5TOOL_BIN="${prefix}/bin/${H5TOOL}" # The path of the tool binary
+
+#### Run test ####
+RunTest()
+{
+ TEST_EXEC=$1
+ Test=$1".c"
+
+ echo
+ echo "################# $1 #################"
+ ${H5TOOL_BIN} -o $TEST_EXEC $Test
+ if [ $? -ne 0 ]
+ then
+ echo "messed up compiling $Test"
+ exit 1
+ fi
+ ./$TEST_EXEC
+}
+
+
+
+################## MAIN ##################
+
+if ! test -d red; then
+ mkdir red
+fi
+if ! test -d blue; then
+ mkdir blue
+fi
+if ! test -d u2w; then
+ mkdir u2w
+fi
+
+# Run tests
+if [ $? -eq 0 ]
+then
+ if (RunTest h5_crtdat &&\
+ rm h5_crtdat &&\
+ RunTest h5_extend &&\
+ rm h5_extend &&\
+ RunTest h5_rdwt &&\
+ rm h5_rdwt &&\
+ RunTest h5_crtatt &&\
+ rm h5_crtatt &&\
+ RunTest h5_crtgrp &&\
+ rm h5_crtgrp &&\
+ RunTest h5_crtgrpar &&\
+ rm h5_crtgrpar &&\
+ RunTest h5_crtgrpd &&\
+ rm h5_crtgrpd &&\
+ RunTest h5_subset &&\
+ rm h5_subset &&\
+ RunTest h5_cmprss &&\
+ rm h5_cmprss &&\
+ RunTest h5_write &&\
+ rm h5_write &&\
+ RunTest h5_read &&\
+ rm h5_read &&\
+ RunTest h5_extend_write &&\
+ rm h5_extend_write &&\
+ RunTest h5_chunk_read &&\
+ rm h5_chunk_read &&\
+ RunTest h5_compound &&\
+ rm h5_compound &&\
+ RunTest h5_group &&\
+ rm h5_group &&\
+ RunTest h5_select &&\
+ rm h5_select &&\
+ RunTest h5_attribute &&\
+ rm h5_attribute &&\
+ RunTest h5_mount &&\
+ rm h5_mount &&\
+ RunTest h5_reference &&\
+ rm h5_reference &&\
+ RunTest h5_drivers &&\
+ rm h5_drivers &&\
+ RunTest h5_ref2reg &&\
+ rm h5_ref2reg &&\
+ RunTest h5_extlink &&\
+ rm h5_extlink &&\
+ RunTest h5_elink_unix2win &&\
+ rm h5_elink_unix2win &&\
+ RunTest h5_shared_mesg &&\
+ rm h5_shared_mesg); then
+ EXIT_VALUE=${EXIT_SUCCESS}
+ else
+ EXIT_VALUE=${EXIT_FAILURE}
+ fi
+fi
+
+# Cleanup
+rm *.o
+rm *.h5
+rm -rf red blue u2w
+echo
+
+exit $EXIT_VALUE
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_ds1.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_ds1.c
new file mode 100644
index 0000000000000000000000000000000000000000..8b7e530786ed12fc1df8b45ef26d4da0eb08b31f
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_ds1.c
@@ -0,0 +1,114 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+
+
+#define RANK 2
+#define DIM_DATA 12
+#define DIM1_SIZE 3
+#define DIM2_SIZE 4
+#define DIM0 0
+#define DIM1 1
+
+#define DSET_NAME "Mydata"
+#define DS_1_NAME "Yaxis"
+#define DS_2_NAME "Xaxis"
+
+int main(void)
+{
+
+ hid_t fid; /* file ID */
+ hid_t did; /* dataset ID */
+ hid_t dsid; /* DS dataset ID */
+ int rank = RANK; /* rank of data dataset */
+ int rankds = 1; /* rank of DS dataset */
+ hsize_t dims[RANK] = {DIM1_SIZE,DIM2_SIZE}; /* size of data dataset */
+ int buf[DIM_DATA] = {1,2,3,4,5,6,7,8,9,10,11,12}; /* data of data dataset */
+ hsize_t s1_dim[1] = {DIM1_SIZE}; /* size of DS 1 dataset */
+ hsize_t s2_dim[1] = {DIM2_SIZE}; /* size of DS 2 dataset */
+ float s1_wbuf[DIM1_SIZE] = {10,20,30}; /* data of DS 1 dataset */
+ int s2_wbuf[DIM2_SIZE] = {10,20,50,100}; /* data of DS 2 dataset */
+
+
+ /* create a file using default properties */
+ if ((fid=H5Fcreate("ex_ds1.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT))<0)
+ goto out;
+
+ /* make a dataset */
+ if (H5LTmake_dataset_int(fid,DSET_NAME,rank,dims,buf)<0)
+ goto out;
+
+ /* make a DS dataset for the first dimension */
+ if (H5LTmake_dataset_float(fid,DS_1_NAME,rankds,s1_dim,s1_wbuf)<0)
+ goto out;
+
+ /* make a DS dataset for the second dimension */
+ if (H5LTmake_dataset_int(fid,DS_2_NAME,rankds,s2_dim,s2_wbuf)<0)
+ goto out;
+
+
+/*-------------------------------------------------------------------------
+ * attach the DS_1_NAME dimension scale to DSET_NAME at dimension 0
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the dataset id for DSET_NAME */
+ if ((did = H5Dopen2(fid,DSET_NAME, H5P_DEFAULT))<0)
+ goto out;
+
+ /* get the DS dataset id */
+ if ((dsid = H5Dopen2(fid,DS_1_NAME, H5P_DEFAULT))<0)
+ goto out;
+
+ /* attach the DS_1_NAME dimension scale to DSET_NAME at dimension index 0 */
+ if (H5DSattach_scale(did,dsid,DIM0)<0)
+ goto out;
+
+ /* close DS id */
+ if (H5Dclose(dsid)<0)
+ goto out;
+
+/*-------------------------------------------------------------------------
+ * attach the DS_2_NAME dimension scale to DSET_NAME
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the DS dataset id */
+ if ((dsid = H5Dopen2(fid,DS_2_NAME, H5P_DEFAULT))<0)
+ goto out;
+
+ /* attach the DS_2_NAME dimension scale to DSET_NAME as the 2nd dimension (index 1) */
+ if (H5DSattach_scale(did,dsid,DIM1)<0)
+ goto out;
+
+ /* close DS id */
+ if (H5Dclose(dsid)<0)
+ goto out;
+
+ /* close file */
+ H5Fclose(fid);
+
+ return 0;
+
+out:
+ printf("Error on return function...Exiting\n");
+ return 1;
+
+}
+
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image1.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image1.c
new file mode 100644
index 0000000000000000000000000000000000000000..96bc7c7e33e540954c66643a3351b6c3ee8e7466
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image1.c
@@ -0,0 +1,72 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+
+#define WIDTH 400
+#define HEIGHT 200
+#define PAL_ENTRIES 9
+unsigned char buf [ WIDTH*HEIGHT ];
+
+int main( void )
+{
+ hid_t file_id;
+ herr_t status;
+ hsize_t pal_dims[] = {PAL_ENTRIES,3};
+ size_t i, j;
+ int n, space;
+ unsigned char pal[PAL_ENTRIES*3] = { /* create a palette with 9 colors */
+ 0,0,168, /* dark blue */
+ 0,0,252, /* blue */
+ 0,168,252, /* ocean blue */
+ 84,252,252, /* light blue */
+ 168,252,168, /* light green */
+ 0,252,168, /* green */
+ 252,252,84, /* yellow */
+ 252,168,0, /* orange */
+ 252,0,0}; /* red */
+
+ /* create an image of 9 values divided evenly by the array */
+ space = WIDTH*HEIGHT / PAL_ENTRIES;
+ for (i=0, j=0, n=0; i < WIDTH*HEIGHT; i++, j++ )
+ {
+ buf[i] = n;
+ if ( j > space )
+ {
+ n++;
+ j=0;
+ }
+ if (n>PAL_ENTRIES-1) n=0;
+ }
+
+ /* create a new HDF5 file using default properties. */
+ file_id = H5Fcreate( "ex_image1.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* make the image */
+ status = H5IMmake_image_8bit( file_id, "image1", (hsize_t)WIDTH, (hsize_t)HEIGHT, buf );
+
+ /* make a palette */
+ status = H5IMmake_palette( file_id, "pallete", pal_dims, pal );
+
+ /* attach the palette to the image */
+ status = H5IMlink_palette( file_id, "image1", "pallete" );
+
+ /* close the file. */
+ status = H5Fclose( file_id );
+
+ return 0;
+
+}
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image2.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image2.c
new file mode 100644
index 0000000000000000000000000000000000000000..3276f7c60eff5a01a40c96dbcec22ec794a1759b
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_image2.c
@@ -0,0 +1,186 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+#include <string.h>
+
+#define DATA_FILE1 "image8.txt"
+#define DATA_FILE2 "image24pixel.txt"
+#define IMAGE1_NAME "image8bit"
+#define IMAGE2_NAME "image24bitpixel"
+#define PAL_NAME "palette"
+#define PAL_ENTRIES 256
+
+static int read_data(const char* file_name, hsize_t *width, hsize_t *height );
+unsigned char *gbuf = NULL; /* global buffer for image data */
+
+int main( void )
+{
+ hid_t file_id; /* HDF5 file identifier */
+ hsize_t width; /* width of image */
+ hsize_t height; /* height of image */
+ unsigned char pal[ PAL_ENTRIES * 3 ]; /* palette array */
+ hsize_t pal_dims[2] = {PAL_ENTRIES,3}; /* palette dimensions */
+ herr_t status, i, n;
+
+ /* create a new HDF5 file using default properties. */
+ file_id = H5Fcreate( "ex_image2.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* read first data file */
+ if (read_data(DATA_FILE1,&width,&height)<0)
+ goto out;
+
+ /* make the image */
+ status=H5IMmake_image_8bit( file_id, IMAGE1_NAME, width, height, gbuf );
+ if (gbuf) {
+ free(gbuf);
+ gbuf = NULL;
+ }
+
+/*-------------------------------------------------------------------------
+ * define a palette, blue to red tones
+ *-------------------------------------------------------------------------
+ */
+ for ( i=0, n=0; i<PAL_ENTRIES*3; i+=3, n++)
+ {
+ pal[i] =n; /* red */
+ pal[i+1]=0; /* green */
+ pal[i+2]=255-n; /* blue */
+ }
+
+ /* make a palette */
+ status=H5IMmake_palette( file_id, PAL_NAME, pal_dims, pal );
+
+ /* attach the palette to the image */
+ status=H5IMlink_palette( file_id, IMAGE1_NAME, PAL_NAME );
+
+/*-------------------------------------------------------------------------
+ * True color image example with pixel interlace
+ *-------------------------------------------------------------------------
+ */
+
+ /* read second data file */
+ if (read_data(DATA_FILE2,&width,&height)<0)
+ goto out;
+
+ /* make dataset */
+ status=H5IMmake_image_24bit( file_id, IMAGE2_NAME, width, height, "INTERLACE_PIXEL", gbuf );
+
+ /* close the file. */
+ H5Fclose( file_id );
+
+ if(gbuf) {
+ free(gbuf);
+ gbuf = NULL;
+ }
+
+ return 0;
+
+out:
+ printf("Error on return function...Exiting\n");
+
+ if(gbuf) {
+ free(gbuf);
+ gbuf = NULL;
+ }
+
+ return 1;
+}
+
+
+/*-------------------------------------------------------------------------
+ * read_data
+ * utility function to read ASCII image data
+ * the files have a header of the type
+ *
+ * components
+ * n
+ * height
+ * n
+ * width
+ * n
+ *
+ * followed by the image data
+ *
+ *-------------------------------------------------------------------------
+ */
+
+static int read_data( const char* fname, /*IN*/
+ hsize_t *width, /*OUT*/
+ hsize_t *height /*OUT*/ )
+{
+ int i, n;
+ int color_planes;
+ char str[20];
+ FILE *f;
+ int w, h;
+ char *srcdir = getenv("srcdir"); /* the source directory */
+ char data_file[512]=""; /* buffer to hold name of existing data file */
+
+/*-------------------------------------------------------------------------
+ * compose the name of the file to open, using "srcdir", if appropriate
+ *-------------------------------------------------------------------------
+ */
+ strcpy(data_file, "");
+ if (srcdir)
+ {
+ strcpy(data_file, srcdir);
+ strcat(data_file, "/");
+ }
+ strcat(data_file,fname);
+
+/*-------------------------------------------------------------------------
+ * read
+ *-------------------------------------------------------------------------
+ */
+
+ f = fopen(data_file, "r");
+ if ( f == NULL )
+ {
+ printf( "Could not open file %s. Try set $srcdir \n", data_file );
+ return -1;
+ }
+
+ fscanf( f, "%s", str );
+ fscanf( f, "%d", &color_planes );
+ fscanf( f, "%s", str );
+ fscanf( f, "%d", &h);
+ fscanf( f, "%s", str );
+ fscanf( f, "%d", &w);
+
+ *width = (hsize_t)w;
+ *height = (hsize_t)h;
+
+ if ( gbuf )
+ {
+ free( gbuf );
+ gbuf=NULL;
+ }
+
+ gbuf = (unsigned char*) malloc (w * h * color_planes * sizeof( unsigned char ));
+
+ for (i = 0; i < h * w * color_planes ; i++)
+ {
+ fscanf( f, "%d",&n );
+ gbuf[i] = (unsigned char)n;
+ }
+ fclose(f);
+
+ return 1;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite1.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite1.c
new file mode 100644
index 0000000000000000000000000000000000000000..2a82fef1b683ec8ac3893b8395fb8be490a78d2e
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite1.c
@@ -0,0 +1,42 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+
+#define RANK 2
+
+
+int main( void )
+{
+ hid_t file_id;
+ hsize_t dims[RANK]={2,3};
+ int data[6]={1,2,3,4,5,6};
+ herr_t status;
+
+ /* create a HDF5 file */
+ file_id = H5Fcreate ("ex_lite1.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* create and write an integer type dataset named "dset" */
+ status = H5LTmake_dataset(file_id,"/dset",RANK,dims,H5T_NATIVE_INT,data);
+
+ /* close file */
+ status = H5Fclose (file_id);
+
+ return 0;
+}
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite2.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite2.c
new file mode 100644
index 0000000000000000000000000000000000000000..98f92c8d90f780093dc66ec22893775025ccfc44
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite2.c
@@ -0,0 +1,54 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+
+int main( void )
+{
+ hid_t file_id;
+ int data[6];
+ hsize_t dims[2];
+ herr_t status;
+ size_t i, j, nrow, n_values;
+
+ /* open file from ex_lite1.c */
+ file_id = H5Fopen ("ex_lite1.h5", H5F_ACC_RDONLY, H5P_DEFAULT);
+
+ /* read dataset */
+ status = H5LTread_dataset_int(file_id,"/dset",data);
+
+ /* get the dimensions of the dataset */
+ status = H5LTget_dataset_info(file_id,"/dset",dims,NULL,NULL);
+
+ /* print it by rows */
+ n_values = (size_t)(dims[0] * dims[1]);
+ nrow = (size_t)dims[1];
+ for (i=0; i<n_values/nrow; i++ )
+ {
+ for (j=0; j<nrow; j++)
+ printf (" %d", data[i*nrow + j]);
+ printf ("\n");
+ }
+
+ /* close file */
+ status = H5Fclose (file_id);
+
+ return 0;
+
+
+}
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite3.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite3.c
new file mode 100644
index 0000000000000000000000000000000000000000..9164c7b5861f4424446a88946ea069bee64d2cd1
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_lite3.c
@@ -0,0 +1,70 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+#define ATTR_SIZE 5
+
+int main( void )
+{
+ hid_t file_id;
+ hid_t dset_id;
+ hid_t space_id;
+ hsize_t dims[1] = { ATTR_SIZE };
+ int data[ATTR_SIZE] = {1,2,3,4,5};
+ herr_t status;
+ int i;
+
+ /* create a file */
+ file_id = H5Fcreate("ex_lite3.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* create a data space */
+ space_id = H5Screate_simple(1, dims, NULL);
+
+ /* create a dataset named "dset" */
+ dset_id = H5Dcreate2(file_id, "dset", H5T_NATIVE_INT, space_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
+
+ /* close */
+ status = H5Dclose(dset_id);
+ status = H5Sclose(space_id);
+
+/*-------------------------------------------------------------------------
+ * example of H5LTset_attribute_int
+ *-------------------------------------------------------------------------
+ */
+
+ /* create and write the attribute "attr1" on the dataset "dset" */
+ status = H5LTset_attribute_int(file_id, "dset", "attr1", data, ATTR_SIZE);
+
+/*-------------------------------------------------------------------------
+ * example of H5LTget_attribute_int
+ *-------------------------------------------------------------------------
+ */
+
+ /* get the attribute "attr1" from the dataset "dset" */
+ status = H5LTget_attribute_int(file_id, "dset", "attr1", data);
+
+ for(i = 0; i < ATTR_SIZE; i++ )
+ printf(" %d", data[i]);
+ printf("\n");
+
+ /* close file */
+ status = H5Fclose(file_id);
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_01.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_01.c
new file mode 100644
index 0000000000000000000000000000000000000000..de304d96b6e57ec5a9294a0276eaf4a448c75616
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_01.c
@@ -0,0 +1,138 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBmake_table
+ * H5TBread_table
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE_NAME "table"
+
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ Particle dst_buf[NRECORDS];
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ size_t dst_sizes[NFIELDS] = { sizeof( dst_buf[0].name),
+ sizeof( dst_buf[0].lati),
+ sizeof( dst_buf[0].longi),
+ sizeof( dst_buf[0].pressure),
+ sizeof( dst_buf[0].temperature)};
+
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int *fill_data = NULL;
+ int compress = 0;
+ herr_t status;
+ int i;
+
+ /* Initialize field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_01.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+/*-------------------------------------------------------------------------
+ * H5TBmake_table
+ *-------------------------------------------------------------------------
+ */
+
+ status=H5TBmake_table( "Table Title", file_id, TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+/*-------------------------------------------------------------------------
+ * H5TBread_table
+ *-------------------------------------------------------------------------
+ */
+
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* print it by rows */
+ for (i=0; i<NRECORDS; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+/*-------------------------------------------------------------------------
+ * end
+ *-------------------------------------------------------------------------
+ */
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_02.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_02.c
new file mode 100644
index 0000000000000000000000000000000000000000..98e33d3e05701a0c0d70c06c41d8b920db675f81
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_02.c
@@ -0,0 +1,132 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBappend_records
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_ADD (hsize_t) 2
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ Particle dst_buf[NRECORDS+NRECORDS_ADD];
+
+/* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ size_t dst_sizes[NFIELDS] = { sizeof( p_data[0].name),
+ sizeof( p_data[0].lati),
+ sizeof( p_data[0].longi),
+ sizeof( p_data[0].pressure),
+ sizeof( p_data[0].temperature)};
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int *fill_data = NULL;
+ int compress = 0;
+ herr_t status;
+ int i;
+
+ /* Append particles */
+ Particle particle_in[ NRECORDS_ADD ] =
+ {{ "eight",80,80, 8.0f, 80.0},
+ {"nine",90,90, 9.0f, 90.0} };
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_02.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* make a table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size, field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* append two records */
+ status=H5TBappend_records(file_id, TABLE_NAME,NRECORDS_ADD, dst_size, dst_offset, dst_sizes,
+ &particle_in );
+
+ /* read the table */
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* print it by rows */
+ for (i=0; i<NRECORDS+NRECORDS_ADD; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_03.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_03.c
new file mode 100644
index 0000000000000000000000000000000000000000..7315fd3ac687cc1d32f7ca026d1fdedf8341e98c
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_03.c
@@ -0,0 +1,139 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBwrite_records
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_WRITE (hsize_t) 2
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ Particle dst_buf[NRECORDS];
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ Particle p = {"zero",0,0, 0.0f, 0.0};
+ size_t dst_sizes[NFIELDS] = { sizeof( p.name),
+ sizeof( p.lati),
+ sizeof( p.longi),
+ sizeof( p.pressure),
+ sizeof( p.temperature)};
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ /* Fill value particle */
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ hsize_t start; /* Record to start reading/writing */
+ hsize_t nrecords; /* Number of records to read/write */
+ herr_t status;
+ int i;
+
+ /* Define 2 new particles to write */
+ Particle particle_in[NRECORDS_WRITE] =
+ { {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0} };
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+/* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_03.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title",
+ file_id,
+ TABLE_NAME,
+ NFIELDS,
+ NRECORDS,
+ dst_size,
+ field_names,
+ dst_offset,
+ field_type,
+ chunk_size,
+ fill_data,
+ 0, /* no compression */
+ NULL ); /* no data written */
+
+
+ /* Overwrite 2 records starting at record 0 */
+ start = 0;
+ nrecords = NRECORDS_WRITE;
+ status=H5TBwrite_records( file_id, TABLE_NAME, start, nrecords, dst_size, dst_offset,
+ dst_sizes, particle_in);
+
+ /* read the table */
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* print it by rows */
+ for (i=0; i<NRECORDS; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_04.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_04.c
new file mode 100644
index 0000000000000000000000000000000000000000..0a01116e9d173ad34334d27852831ceadb70f9b6
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_04.c
@@ -0,0 +1,166 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBwrite_fields_name
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_ADD (hsize_t) 3
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Define a subset of Particle, with latitude and longitude fields */
+ typedef struct Position
+ {
+ int lati;
+ int longi;
+ } Position;
+
+ /* Define a subset of Particle, with name and pressure fields */
+ typedef struct NamePressure
+ {
+ char name[16];
+ float pressure;
+ } NamePressure;
+
+ Particle dst_buf[NRECORDS];
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+ size_t dst_sizes[NFIELDS] = { sizeof( dst_buf[0].name),
+ sizeof( dst_buf[0].lati),
+ sizeof( dst_buf[0].longi),
+ sizeof( dst_buf[0].pressure),
+ sizeof( dst_buf[0].temperature)};
+ size_t field_offset_pos[2] = { HOFFSET( Position, lati ),
+ HOFFSET( Position, longi )};
+ const char *field_names[NFIELDS] = /* Define field information */
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} }; /* Fill value particle */
+ hsize_t start; /* Record to start reading/writing */
+ hsize_t nrecords; /* Number of records to read/write */
+ int compress = 0;
+ herr_t status;
+ int i;
+ Particle *p_data = NULL; /* Initially no data */
+ float pressure_in [NRECORDS_ADD] = /* Define new values for the field "Pressure" */
+ { 0.0f,1.0f,2.0f};
+ Position position_in[NRECORDS_ADD] = {/* Define new values for "Latitude,Longitude" */
+ {0,0},
+ {10,10},
+ {20,20}};
+ NamePressure namepre_in[NRECORDS_ADD] =/* Define new values for "Name,Pressure" */
+ { {"zero",0.0f},
+ {"one", 1.0f},
+ {"two", 2.0f},
+ };
+ size_t field_sizes_pos[2]=
+ {
+ sizeof(position_in[0].longi),
+ sizeof(position_in[0].lati)
+ };
+ size_t field_sizes_pre[1]=
+ {
+ sizeof(namepre_in[0].pressure)
+ };
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_04.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Write the pressure field starting at record 2 */
+ start = 2;
+ nrecords = NRECORDS_ADD;
+ status=H5TBwrite_fields_name( file_id, TABLE_NAME, "Pressure", start, nrecords,
+ sizeof( float ), 0, field_sizes_pre, pressure_in );
+
+ /* Write the new longitude and latitude information starting at record 2 */
+ start = 2;
+ nrecords = NRECORDS_ADD;
+ status=H5TBwrite_fields_name( file_id, TABLE_NAME, "Latitude,Longitude", start, nrecords,
+ sizeof( Position ), field_offset_pos, field_sizes_pos, position_in );
+
+ /* read the table */
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* print it by rows */
+ for (i=0; i<NRECORDS; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+/*-------------------------------------------------------------------------
+ * end
+ *-------------------------------------------------------------------------
+ */
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_05.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_05.c
new file mode 100644
index 0000000000000000000000000000000000000000..f0c96ebf4ca2f5fbb389fae2f43837765c8e9a52
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_05.c
@@ -0,0 +1,176 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBwrite_fields_index
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_ADD (hsize_t) 3
+#define TABLE_NAME "table"
+
+
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Define a subset of Particle, with latitude and longitude fields */
+ typedef struct Position
+ {
+ int lati;
+ int longi;
+ } Position;
+
+ /* Define a subset of Particle, with name and pressure fields */
+ typedef struct NamePressure
+ {
+ char name[16];
+ float pressure;
+ } NamePressure;
+
+ /* Calculate the type_size and the offsets of our struct members */
+ Particle dst_buf[NRECORDS];
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+ size_t dst_sizes[NFIELDS] = { sizeof( dst_buf[0].name),
+ sizeof( dst_buf[0].lati),
+ sizeof( dst_buf[0].longi),
+ sizeof( dst_buf[0].pressure),
+ sizeof( dst_buf[0].temperature)};
+
+ size_t field_offset_pos[2] = { HOFFSET( Position, lati ),
+ HOFFSET( Position, longi )};
+
+ /* Initially no data */
+ Particle *p_data = NULL;
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} }; /* Fill value particle */
+ int compress = 0;
+ hsize_t nfields;
+ hsize_t start; /* Record to start reading/writing */
+ hsize_t nrecords; /* Number of records to read/write */
+ herr_t status;
+ int i;
+
+ /* Define new values for the field "Pressure" */
+ float pressure_in [NRECORDS_ADD] =
+ { 0.0f,1.0f,2.0f};
+ int field_index_pre[1] = { 3 };
+ int field_index_pos[2] = { 1,2 };
+
+ /* Define new values for the fields "Latitude,Longitude" */
+ Position position_in[NRECORDS_ADD] = { {0,0},
+ {10,10},
+ {20,20} };
+
+ size_t field_sizes_pos[2]=
+ {
+ sizeof(position_in[0].longi),
+ sizeof(position_in[0].lati)
+ };
+
+ size_t field_sizes_pre[1]=
+ {
+ sizeof(float)
+ };
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_05.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title", file_id, TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Write the pressure field starting at record 2 */
+ nfields = 1;
+ start = 2;
+ nrecords = NRECORDS_ADD;
+ status=H5TBwrite_fields_index( file_id, TABLE_NAME, nfields, field_index_pre, start, nrecords,
+ sizeof( float ), 0, field_sizes_pre, pressure_in );
+
+
+ /* Write the new longitude and latitude information starting at record 2 */
+ nfields = 2;
+ start = 2;
+ nrecords = NRECORDS_ADD;
+ status=H5TBwrite_fields_index( file_id, TABLE_NAME, nfields, field_index_pos, start, nrecords,
+ sizeof( Position ), field_offset_pos, field_sizes_pos, position_in );
+
+
+ /* read the table */
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* print it by rows */
+ for (i=0; i<NRECORDS; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_06.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_06.c
new file mode 100644
index 0000000000000000000000000000000000000000..261b23c772e00eac2bec208371af37ea531d7bb9
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_06.c
@@ -0,0 +1,98 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBget_table_info
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} }; /* Fill value particle */
+ int compress = 0;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+ herr_t status;
+
+ /* Initialize field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_06.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make a table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,dst_size,
+ field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, NULL);
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_07.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_07.c
new file mode 100644
index 0000000000000000000000000000000000000000..3479aa81db7f61a7b6a5502e35e29bc9c7b5e625
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_07.c
@@ -0,0 +1,115 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBdelete_record
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ const char *field_names[NFIELDS] = /* Define field information */
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} };
+ hsize_t start; /* Record to start reading */
+ hsize_t nrecords; /* Number of records to insert/delete */
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+ herr_t status;
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_07.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Delete records */
+ start = 3;
+ nrecords = 3;
+ status=H5TBdelete_record( file_id, TABLE_NAME, start, nrecords );
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_08.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_08.c
new file mode 100644
index 0000000000000000000000000000000000000000..4078beafeb65b88d7326c9d7dc184241012dcb50
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_08.c
@@ -0,0 +1,146 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBinsert_record
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_INS (hsize_t) 2
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ Particle dst_buf[ NRECORDS + NRECORDS_INS ];
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+ size_t dst_sizes[NFIELDS] = { sizeof( p_data[0].name),
+ sizeof( p_data[0].lati),
+ sizeof( p_data[0].longi),
+ sizeof( p_data[0].pressure),
+ sizeof( p_data[0].temperature)};
+
+ /* Define an array of Particles to insert */
+ Particle p_data_insert[NRECORDS_INS] =
+ { {"new",30,30, 3.0f, 30.0},
+ {"new",40,40, 4.0f, 40.0}
+ };
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ int *fill_data = NULL;
+ hsize_t start; /* Record to start reading */
+ hsize_t nrecords; /* Number of records to insert/delete */
+ herr_t status;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+ int i;
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_08.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Insert records */
+ start = 3;
+ nrecords = NRECORDS_INS;
+ status=H5TBinsert_record( file_id, TABLE_NAME, start, nrecords, dst_size, dst_offset,
+ dst_sizes, p_data_insert );
+
+ /* read the table */
+ status=H5TBread_table( file_id, TABLE_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* get table info */
+ status=H5TBget_table_info(file_id,TABLE_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* print it by rows */
+ for (i=0; i<nrecords_out; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_09.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_09.c
new file mode 100644
index 0000000000000000000000000000000000000000..7ba0aa1493c6e72473a44f6abf8c85e6bc85f933
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_09.c
@@ -0,0 +1,146 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBadd_records_from
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define NRECORDS_INS (hsize_t) 2
+#define TABLE1_NAME "table1"
+#define TABLE2_NAME "table2"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ Particle dst_buf[ NRECORDS + NRECORDS_INS ];
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+ size_t dst_sizes[NFIELDS] = { sizeof( dst_buf[0].name),
+ sizeof( dst_buf[0].lati),
+ sizeof( dst_buf[0].longi),
+ sizeof( dst_buf[0].pressure),
+ sizeof( dst_buf[0].temperature)};
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} }; /* Fill value particle */
+ hsize_t start1; /* Record to start reading from 1st table */
+ hsize_t nrecords; /* Number of records to insert */
+ hsize_t start2; /* Record to start writing in 2nd table */
+ herr_t status;
+ int i;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_09.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make 2 tables: TABLE2_NAME is empty */
+ status=H5TBmake_table( "Table Title",file_id,TABLE1_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ status=H5TBmake_table( "Table Title",file_id,TABLE2_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, NULL );
+
+
+ /* Add 2 records from TABLE1_NAME to TABLE2_NAME */
+ start1 = 3;
+ nrecords = NRECORDS_INS;
+ start2 = 6;
+ status=H5TBadd_records_from( file_id, TABLE1_NAME, start1, nrecords, TABLE2_NAME, start2 );
+
+ /* read TABLE2_NAME: it should have 2 more records now */
+ status=H5TBread_table( file_id, TABLE2_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE2_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* print it by rows */
+ for (i=0; i<nrecords_out; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_10.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_10.c
new file mode 100644
index 0000000000000000000000000000000000000000..20543c2bd408f986526102c29be0ffb791934ddc
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_10.c
@@ -0,0 +1,139 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBcombine_tables
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE1_NAME "table1"
+#define TABLE2_NAME "table2"
+#define TABLE3_NAME "table3"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ Particle dst_buf[ 2 * NRECORDS ];
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+ size_t dst_sizes[NFIELDS] = { sizeof( dst_buf[0].name),
+ sizeof( dst_buf[0].lati),
+ sizeof( dst_buf[0].longi),
+ sizeof( dst_buf[0].pressure),
+ sizeof( dst_buf[0].temperature)};
+
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ int *fill_data = NULL;
+ herr_t status;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+ int i;
+
+ /* Initialize the field field_type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_10.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make two tables */
+ status=H5TBmake_table( "Table Title",file_id,TABLE1_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ status=H5TBmake_table( "Table Title",file_id,TABLE2_NAME,NFIELDS,NRECORDS,
+ dst_size,field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Combine the two tables into a third in the same file */
+ status=H5TBcombine_tables( file_id, TABLE1_NAME, file_id, TABLE2_NAME, TABLE3_NAME );
+
+ /* read the combined table */
+ status=H5TBread_table( file_id, TABLE3_NAME, dst_size, dst_offset, dst_sizes, dst_buf );
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE3_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* print it by rows */
+ for (i=0; i<nrecords_out; i++) {
+ printf ("%-5s %-5d %-5d %-5f %-5f",
+ dst_buf[i].name,
+ dst_buf[i].lati,
+ dst_buf[i].longi,
+ dst_buf[i].pressure,
+ dst_buf[i].temperature);
+ printf ("\n");
+ }
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_11.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_11.c
new file mode 100644
index 0000000000000000000000000000000000000000..872fa4e4909c582545ce218054145d6a00f70266
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_11.c
@@ -0,0 +1,120 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBinsert_field
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle1
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle1;
+
+/* Define an array of Particles */
+ Particle1 p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size1 = sizeof( Particle1 );
+ size_t dst_offset1[NFIELDS] = { HOFFSET( Particle1, name ),
+ HOFFSET( Particle1, lati ),
+ HOFFSET( Particle1, longi ),
+ HOFFSET( Particle1, pressure ),
+ HOFFSET( Particle1, temperature )};
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ Particle1 fill_data[1] = { "no data",-1,-1, -99.0f, -99.0 };
+ int fill_data_new[1] = { -100 };
+ hsize_t position;
+ herr_t status;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+
+ /* Define the inserted field information */
+ hid_t field_type_new = H5T_NATIVE_INT;
+ int data[NRECORDS] = { 0,1,2,3,4,5,6,7 };
+
+ /* Initialize the field type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_11.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make the table */
+ status=H5TBmake_table( "Table Title",file_id,TABLE_NAME,NFIELDS,NRECORDS,
+ dst_size1,field_names, dst_offset1, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Insert the new field at the end of the field list */
+ position = NFIELDS;
+ status=H5TBinsert_field( file_id, TABLE_NAME, "New Field", field_type_new, position,
+ fill_data_new, data );
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_12.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_12.c
new file mode 100644
index 0000000000000000000000000000000000000000..b6cc2b428824a2a87983807a93a280999ae4038f
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ex_table_12.c
@@ -0,0 +1,112 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Table API example
+ *
+ * H5TBdelete_field
+ *
+ *-------------------------------------------------------------------------
+ */
+
+#define NFIELDS (hsize_t) 5
+#define NRECORDS (hsize_t) 8
+#define TABLE_NAME "table"
+
+int main( void )
+{
+ typedef struct Particle
+ {
+ char name[16];
+ int lati;
+ int longi;
+ float pressure;
+ double temperature;
+ } Particle;
+
+ /* Calculate the size and the offsets of our struct members in memory */
+ size_t dst_size = sizeof( Particle );
+ size_t dst_offset[NFIELDS] = { HOFFSET( Particle, name ),
+ HOFFSET( Particle, lati ),
+ HOFFSET( Particle, longi ),
+ HOFFSET( Particle, pressure ),
+ HOFFSET( Particle, temperature )};
+
+ /* Define an array of Particles */
+ Particle p_data[NRECORDS] = {
+ {"zero",0,0, 0.0f, 0.0},
+ {"one",10,10, 1.0f, 10.0},
+ {"two", 20,20, 2.0f, 20.0},
+ {"three",30,30, 3.0f, 30.0},
+ {"four", 40,40, 4.0f, 40.0},
+ {"five", 50,50, 5.0f, 50.0},
+ {"six", 60,60, 6.0f, 60.0},
+ {"seven",70,70, 7.0f, 70.0}
+ };
+
+ /* Define field information */
+ const char *field_names[NFIELDS] =
+ { "Name","Latitude", "Longitude", "Pressure", "Temperature" };
+ hid_t field_type[NFIELDS];
+ hid_t string_type;
+ hid_t file_id;
+ hsize_t chunk_size = 10;
+ int compress = 0;
+ Particle fill_data[1] =
+ { {"no data",-1,-1, -99.0f, -99.0} };
+ herr_t status;
+ hsize_t nfields_out;
+ hsize_t nrecords_out;
+
+ /* Initialize the field type */
+ string_type = H5Tcopy( H5T_C_S1 );
+ H5Tset_size( string_type, 16 );
+ field_type[0] = string_type;
+ field_type[1] = H5T_NATIVE_INT;
+ field_type[2] = H5T_NATIVE_INT;
+ field_type[3] = H5T_NATIVE_FLOAT;
+ field_type[4] = H5T_NATIVE_DOUBLE;
+
+ /* Create a new file using default properties. */
+ file_id = H5Fcreate( "ex_table_12.h5", H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT );
+
+ /* Make a table */
+ status=H5TBmake_table( "Table Title", file_id, TABLE_NAME, NFIELDS, NRECORDS, dst_size,
+ field_names, dst_offset, field_type,
+ chunk_size, fill_data, compress, p_data );
+
+ /* Delete the field */
+ status=H5TBdelete_field( file_id, TABLE_NAME, "Pressure" );
+
+ /* Get table info */
+ status=H5TBget_table_info (file_id,TABLE_NAME, &nfields_out, &nrecords_out );
+
+ /* print */
+ printf ("Table has %d fields and %d records\n",(int)nfields_out,(int)nrecords_out);
+
+ /* close type */
+ H5Tclose( string_type );
+
+ /* close the file */
+ H5Fclose( file_id );
+
+ return 0;
+
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/image24pixel.txt b/privatemodules/nc4/share/hdf5_examples/hl/c/image24pixel.txt
new file mode 100644
index 0000000000000000000000000000000000000000..8af73f299e918329558b98b232efa79c86a6dc83
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/image24pixel.txt
@@ -0,0 +1,101475 @@
+components
+3
+height
+149
+width
+227
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diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/image8.txt b/privatemodules/nc4/share/hdf5_examples/hl/c/image8.txt
new file mode 100644
index 0000000000000000000000000000000000000000..4ba59809d5e60dbfeb0238184dd05dc68b70ad42
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/image8.txt
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+1
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+1
+1
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+1
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+1
+1
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+1
+1
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+1
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+1
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+1
+1
+1
+1
+1
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+1
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+1
+1
+1
+1
+1
+1
+1
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diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/pal_rgb.h b/privatemodules/nc4/share/hdf5_examples/hl/c/pal_rgb.h
new file mode 100644
index 0000000000000000000000000000000000000000..606137e67d947a0e28d4ce0a5e4736350d6c8f32
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/pal_rgb.h
@@ -0,0 +1,279 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+const unsigned char pal_rgb[256*3] = {255,255,255,
+0,0,131,
+0,0,135,
+0,0,139,
+0,0,143,
+0,0,147,
+0,0,151,
+0,0,155,
+0,0,159,
+0,0,163,
+0,0,167,
+0,0,171,
+0,0,175,
+0,0,179,
+0,0,183,
+0,0,187,
+0,0,191,
+0,0,195,
+0,0,199,
+0,0,203,
+0,0,207,
+0,0,211,
+0,0,215,
+0,0,219,
+0,0,223,
+0,0,227,
+0,0,231,
+0,0,235,
+0,0,239,
+0,0,243,
+0,0,247,
+0,0,251,
+0,0,255,
+0,0,255,
+0,3,255,
+0,7,255,
+0,11,255,
+0,15,255,
+0,19,255,
+0,23,255,
+0,27,255,
+0,31,255,
+0,35,255,
+0,39,255,
+0,43,255,
+0,47,255,
+0,51,255,
+0,55,255,
+0,59,255,
+0,63,255,
+0,67,255,
+0,71,255,
+0,75,255,
+0,79,255,
+0,83,255,
+0,87,255,
+0,91,255,
+0,95,255,
+0,99,255,
+0,103,255,
+0,107,255,
+0,111,255,
+0,115,255,
+0,119,255,
+0,123,255,
+0,127,255,
+0,131,255,
+0,135,255,
+0,139,255,
+0,143,255,
+0,147,255,
+0,151,255,
+0,155,255,
+0,159,255,
+0,163,255,
+0,167,255,
+0,171,255,
+0,175,255,
+0,179,255,
+0,183,255,
+0,187,255,
+0,191,255,
+0,195,255,
+0,199,255,
+0,203,255,
+0,207,255,
+0,211,255,
+0,215,255,
+0,219,255,
+0,223,255,
+0,227,255,
+0,231,255,
+0,235,255,
+0,239,255,
+0,243,255,
+0,247,255,
+0,251,255,
+0,255,255,
+0,255,255,
+3,255,251,
+7,255,247,
+11,255,243,
+15,255,239,
+19,255,235,
+23,255,231,
+27,255,227,
+31,255,223,
+35,255,219,
+39,255,215,
+43,255,211,
+47,255,207,
+51,255,203,
+55,255,199,
+59,255,195,
+63,255,191,
+67,255,187,
+71,255,183,
+75,255,179,
+79,255,175,
+83,255,171,
+87,255,167,
+91,255,163,
+95,255,159,
+99,255,155,
+103,255,151,
+107,255,147,
+111,255,143,
+115,255,139,
+119,255,135,
+123,255,131,
+127,255,127,
+131,255,123,
+135,255,119,
+139,255,115,
+143,255,111,
+147,255,107,
+151,255,103,
+155,255,99,
+159,255,95,
+163,255,91,
+167,255,87,
+171,255,83,
+175,255,79,
+179,255,75,
+183,255,71,
+187,255,67,
+191,255,63,
+195,255,59,
+199,255,55,
+203,255,51,
+207,255,47,
+211,255,43,
+215,255,39,
+219,255,35,
+223,255,31,
+227,255,27,
+231,255,23,
+235,255,19,
+239,255,15,
+243,255,11,
+247,255,7,
+251,255,3,
+255,255,0,
+255,251,0,
+255,247,0,
+255,243,0,
+255,239,0,
+255,235,0,
+255,231,0,
+255,227,0,
+255,223,0,
+255,219,0,
+255,215,0,
+255,211,0,
+255,207,0,
+255,203,0,
+255,199,0,
+255,195,0,
+255,191,0,
+255,187,0,
+255,183,0,
+255,179,0,
+255,175,0,
+255,171,0,
+255,167,0,
+255,163,0,
+255,159,0,
+255,155,0,
+255,151,0,
+255,147,0,
+255,143,0,
+255,139,0,
+255,135,0,
+255,131,0,
+255,127,0,
+255,123,0,
+255,119,0,
+255,115,0,
+255,111,0,
+255,107,0,
+255,103,0,
+255,99,0,
+255,95,0,
+255,91,0,
+255,87,0,
+255,83,0,
+255,79,0,
+255,75,0,
+255,71,0,
+255,67,0,
+255,63,0,
+255,59,0,
+255,55,0,
+255,51,0,
+255,47,0,
+255,43,0,
+255,39,0,
+255,35,0,
+255,31,0,
+255,27,0,
+255,23,0,
+255,19,0,
+255,15,0,
+255,11,0,
+255,7,0,
+255,3,0,
+255,0,0,
+250,0,0,
+246,0,0,
+241,0,0,
+237,0,0,
+233,0,0,
+228,0,0,
+224,0,0,
+219,0,0,
+215,0,0,
+211,0,0,
+206,0,0,
+202,0,0,
+197,0,0,
+193,0,0,
+189,0,0,
+184,0,0,
+180,0,0,
+175,0,0,
+171,0,0,
+167,0,0,
+162,0,0,
+158,0,0,
+153,0,0,
+149,0,0,
+145,0,0,
+140,0,0,
+136,0,0,
+131,0,0,
+127,0,0
+};
+
+
+
+
+
+
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/ptExampleFL.c b/privatemodules/nc4/share/hdf5_examples/hl/c/ptExampleFL.c
new file mode 100644
index 0000000000000000000000000000000000000000..bbd0bf6a9876f5bf87b8fe3f09844780e0ea714a
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/ptExampleFL.c
@@ -0,0 +1,107 @@
+/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
+ * Copyright by The HDF Group. *
+ * Copyright by the Board of Trustees of the University of Illinois. *
+ * All rights reserved. *
+ * *
+ * This file is part of HDF5. The full HDF5 copyright notice, including *
+ * terms governing use, modification, and redistribution, is contained in *
+ * the files COPYING and Copyright.html. COPYING can be found at the root *
+ * of the source code distribution tree; Copyright.html can be found at the *
+ * root level of an installed copy of the electronic HDF5 document set and *
+ * is linked from the top-level documents page. It can also be found at *
+ * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
+ * access to either file, you may request a copy from help@hdfgroup.org. *
+ * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
+
+#include "hdf5.h"
+#include "hdf5_hl.h"
+#include <stdlib.h>
+
+/*-------------------------------------------------------------------------
+ * Packet Table Fixed-Length Example
+ *
+ * Example program that creates a packet table and performs
+ * writes and reads.
+ *
+ *-------------------------------------------------------------------------
+ */
+
+int main(void)
+{
+ hid_t fid; /* File identifier */
+ hid_t ptable; /* Packet table identifier */
+
+ herr_t err; /* Function return status */
+ hsize_t count; /* Number of records in the table */
+
+ int x; /* Loop variable */
+
+ /* Buffers to hold data */
+ int writeBuffer[5];
+ int readBuffer[5];
+
+ /* Initialize buffers */
+ for(x=0; x<5; x++)
+ {
+ writeBuffer[x]=x;
+ readBuffer[x] = -1;
+ }
+
+ /* Create a file using default properties */
+ fid=H5Fcreate("packet_table_FLexample.h5",H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT);
+
+ /* Create a fixed-length packet table within the file */
+ /* This table's "packets" will be simple integers and it will use compression
+ * level 5. */
+ ptable = H5PTcreate_fl(fid, "Packet Test Dataset", H5T_NATIVE_INT, (hsize_t)100, 5);
+ if(ptable == H5I_INVALID_HID)
+ goto out;
+
+ /* Write one packet to the packet table */
+ err = H5PTappend(ptable, (hsize_t)1, &(writeBuffer[0]) );
+ if(err < 0)
+ goto out;
+
+ /* Write several packets to the packet table */
+ err = H5PTappend(ptable, (hsize_t)4, &(writeBuffer[1]) );
+ if(err < 0)
+ goto out;
+
+ /* Get the number of packets in the packet table. This should be five. */
+ err = H5PTget_num_packets(ptable, &count);
+ if(err < 0)
+ goto out;
+
+ printf("Number of packets in packet table after five appends: %d\n", (int)count);
+
+ /* Initialize packet table's "current record" */
+ err = H5PTcreate_index(ptable);
+ if(err < 0)
+ goto out;
+
+ /* Iterate through packets, read each one back */
+ for(x=0; x<5; x++)
+ {
+ err = H5PTget_next(ptable, (hsize_t)1, &(readBuffer[x]) );
+ if(err < 0)
+ goto out;
+
+ printf("Packet %d's value is %d\n", x, readBuffer[x]);
+ }
+
+ /* Close the packet table */
+ err = H5PTclose(ptable);
+ if(err < 0)
+ goto out;
+
+ /* Close the file */
+ H5Fclose(fid);
+
+ return 0;
+
+ out: /* An error has occurred. Clean up and exit. */
+ H5PTclose(ptable);
+ H5Fclose(fid);
+ return -1;
+}
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/c/run-hlc-ex.sh b/privatemodules/nc4/share/hdf5_examples/hl/c/run-hlc-ex.sh
new file mode 100755
index 0000000000000000000000000000000000000000..ae3bac11fc6f6ab688df32bb30de0f9cc2a64c8e
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/c/run-hlc-ex.sh
@@ -0,0 +1,121 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+#
+# This file: run-hlc-ex.sh
+# Written by: Larry Knox
+# Date: May 11, 2010
+#
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+# #
+# This script will compile and run the c examples from source files installed #
+# in .../share/hdf5_examples/hl/c using h5cc or h5pc. The order for running #
+# programs with RunTest in the MAIN section below is taken from the Makefile. #
+# The order is important since some of the test programs use data files created #
+# by earlier test programs. Any future additions should be placed accordingly. #
+# #
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+
+# Initializations
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+# Where the tool is installed.
+# default is relative path to installed location of the tools
+prefix="${prefix:-../../../../}"
+PARALLEL=no # Am I in parallel mode?
+AR="ar"
+RANLIB="ranlib"
+if [ "$PARALLEL" = no ]; then
+ H5TOOL="h5cc" # The tool name
+else
+ H5TOOL="h5pcc" # The tool name
+fi
+H5TOOL_BIN="${prefix}/bin/${H5TOOL}" # The path of the tool binary
+
+#### Run test ####
+RunTest()
+{
+ TEST_EXEC=$1
+ Test=$1".c"
+
+ echo
+ echo "################# $1 #################"
+ ${H5TOOL_BIN} -o $TEST_EXEC $Test
+ if [ $? -ne 0 ]
+ then
+ echo "messed up compiling $Test"
+ exit 1
+ fi
+ ./$TEST_EXEC
+}
+
+
+
+################## MAIN ##################
+
+# Run tests
+if [ $? -eq 0 ]
+then
+ if (RunTest ex_lite1 &&\
+ rm ex_lite1 &&\
+ RunTest ex_lite2 &&\
+ rm ex_lite2 &&\
+ RunTest ex_lite3 &&\
+ rm ex_lite3 &&\
+ RunTest ptExampleFL &&\
+ rm ptExampleFL &&\
+ RunTest ex_image1 &&\
+ rm ex_image1 &&\
+ RunTest ex_image2 &&\
+ rm ex_image2 &&\
+ RunTest ex_table_01 &&\
+ rm ex_table_01 &&\
+ RunTest ex_table_02 &&\
+ rm ex_table_02 &&\
+ RunTest ex_table_03 &&\
+ rm ex_table_03 &&\
+ RunTest ex_table_04 &&\
+ rm ex_table_04 &&\
+ RunTest ex_table_05 &&
+ rm ex_table_05 &&
+ RunTest ex_table_06 &&\
+ rm ex_table_06 &&\
+ RunTest ex_table_07 &&\
+ rm ex_table_07 &&\
+ RunTest ex_table_08 &&\
+ rm ex_table_08 &&\
+ RunTest ex_table_09 &&\
+ rm ex_table_09 &&\
+ RunTest ex_table_10 &&\
+ rm ex_table_10 &&\
+ RunTest ex_table_11 &&\
+ rm ex_table_11 &&\
+ RunTest ex_table_12 &&\
+ rm ex_table_12 &&\
+ RunTest ex_ds1 &&\
+ rm ex_ds1); then
+ EXIT_VALUE=${EXIT_SUCCESS}
+ else
+ EXIT_VALUE=${EXIT_FAILURE}
+ fi
+fi
+
+# Cleanup
+rm *.o
+rm *.h5
+echo
+
+exit $EXIT_VALUE
+
diff --git a/privatemodules/nc4/share/hdf5_examples/hl/run-hl-ex.sh b/privatemodules/nc4/share/hdf5_examples/hl/run-hl-ex.sh
new file mode 100755
index 0000000000000000000000000000000000000000..5fa97c09590fa85f856e1822006b93d8c88f4fb4
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/hl/run-hl-ex.sh
@@ -0,0 +1,40 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+#
+# This file: run-hl-ex.sh
+# Written by: Larry Knox
+# Date: May 11, 2010
+#
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+# #
+# This script will run the scripts to compile and run the hdf5 hl examples. #
+# #
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+
+if (echo "Run hl c examples" && \
+ (cd c; sh ./run-hlc-ex.sh) && \
+ (if test -d fortran; then
+ echo "Run hl fortran examples"
+ cd fortran; sh ./run-hlfortran-ex.sh
+ fi)
+ (if test -d c++; then
+ echo "Run hl c++ examples"
+ cd c++; sh ./run-hlc++-ex.sh
+ fi)); then
+ echo "Finished running hl examples"
+ exit 0
+else
+ exit 1
+fi
diff --git a/privatemodules/nc4/share/hdf5_examples/run-all-ex.sh b/privatemodules/nc4/share/hdf5_examples/run-all-ex.sh
new file mode 100755
index 0000000000000000000000000000000000000000..4ff2c55ec1c461d0927921e44d638c646d6ea948
--- /dev/null
+++ b/privatemodules/nc4/share/hdf5_examples/run-all-ex.sh
@@ -0,0 +1,46 @@
+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the files COPYING and Copyright.html. COPYING can be found at the root
+# of the source code distribution tree; Copyright.html can be found at the
+# root level of an installed copy of the electronic HDF5 document set and
+# is linked from the top-level documents page. It can also be found at
+# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
+# access to either file, you may request a copy from help@hdfgroup.org.
+
+#
+# This file: run-hl-ex.sh
+# Written by: Larry Knox
+# Date: May 11, 2010
+#
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+# #
+# This script will run the scripts to compile and run the installed hdf5 #
+# examples. #
+# #
+# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #
+
+echo "Run c examples"
+if ((cd c; sh ./run-c-ex.sh) && \
+ (if test -d fortran; then
+ echo "Run fortran examples"
+ cd fortran; sh ./run-fortran-ex.sh
+ fi)
+ (if test -d c++; then
+ echo "Run c++ examples"
+ cd c++; sh ./run-c++-ex.sh
+ fi)
+ (if test -d hl; then
+ echo "Run hl examples."
+ cd hl; sh ./run-hl-ex.sh
+ fi)); then
+ echo "Done"
+ exit 0
+else
+ exit 1
+fi
+
diff --git a/privatemodules/nc4/share/man/man1/nccopy.1 b/privatemodules/nc4/share/man/man1/nccopy.1
new file mode 100644
index 0000000000000000000000000000000000000000..7a462a5e945fcec5af6c3dc9a94469063a2b7aa6
--- /dev/null
+++ b/privatemodules/nc4/share/man/man1/nccopy.1
@@ -0,0 +1,332 @@
+.\" $Id: nccopy.1 400 2010-08-27 21:02:52Z russ $
+.TH NCCOPY 1 "2012-03-08" "Release 4.2" "UNIDATA UTILITIES"
+.SH NAME
+nccopy \- Copy a netCDF file, optionally changing format, compression, or chunking in the output.
+.SH SYNOPSIS
+.ft B
+.HP
+nccopy
+.nh
+\%[\-k \fI kind_name \fP]
+\%[\-\fIkind_code\fP]
+\%[\-d \fI n \fP]
+\%[\-s]
+\%[\-c \fI chunkspec \fP]
+\%[\-u]
+\%[\-w]
+\%[\-[v|V] var1,...]
+\%[\-[g|G] grp1,...]
+\%[\-m \fI bufsize \fP]
+\%[\-h \fI chunk_cache \fP]
+\%[\-e \fI cache_elems \fP]
+\%[\-r]
+\%\fI infile \fP
+\%\fI outfile \fP
+.hy
+.ft
+.SH DESCRIPTION
+.LP
+The \fBnccopy\fP utility copies an input netCDF file in any supported
+format variant to an output netCDF file, optionally converting the
+output to any compatible netCDF format variant, compressing the data,
+or rechunking the data. For example, if built with the netCDF-3
+library, a netCDF classic file may be copied to a netCDF 64-bit offset
+file, permitting larger variables. If built with the netCDF-4
+library, a netCDF classic file may be copied to a netCDF-4 file or to
+a netCDF-4 classic model file as well, permitting data compression,
+efficient schema changes, larger variable sizes, and use of other
+netCDF-4 features.
+.LP
+If no output format is specified, with either \-k \fIkind_name\fP
+or \fI-kind_code\fP, then the output will use the same
+format as the input, unless the input is classic or 64-bit offset
+and either chunking or compression is specified, in which case the
+output will be netCDF-4 classic model format. Attempting
+some kinds of format conversion will result in an error, if the
+conversion is not possible. For example, an attempt to copy a
+netCDF-4 file that uses features of the enhanced model, such as
+groups or variable-length strings, to any of the other kinds of netCDF
+formats that use the classic model will result in an error.
+.LP
+\fBnccopy\fP also serves as an example of a generic netCDF-4 program,
+with its ability to read any valid netCDF file and handle nested
+groups, strings, and user-defined types, including arbitrarily
+nested compound types, variable-length types, and data of any valid
+netCDF-4 type.
+.LP
+If DAP support was enabled when \fBnccopy\fP was built, the file name may
+specify a DAP URL. This may be used to convert data on DAP servers to
+local netCDF files.
+.SH OPTIONS
+.IP "\fB \-k \fP \fI kind_name \fP"
+Use format name to specify the kind of file to be created
+and, by inference, the data model (i.e. netcdf-3 (classic) or
+netcdf-4 (enhanced)). The possible arguments are:
+.RS
+.RS
+.IP "'nc3' or 'classic' => netCDF classic format"
+.IP "'nc6' or '64-bit offset' => netCDF 64-bit format"
+.IP "'nc4' or 'netCDF-4' => netCDF-4 format (enhanced data model)"
+.IP "'nc7' or 'netCDF-4 classic model' => netCDF-4 classic model format"
+.RE
+.RE
+.IP
+Note: The old format numbers '1', '2', '3', '4', equivalent
+to the format names 'nc3', 'nc6', 'nc4', or 'nc7' respectively, are
+also still accepted but deprecated, due to easy confusion between
+format numbers and format names.
+.IP "[\fB-\fP\fIkind_code\fP]"
+Use format numeric code (instead of format name) to specify the kind of file to be created
+and, by inference, the data model (i.e. netcdf-3 (classic) versus
+netcdf-4 (enhanced)). The numeric codes are:
+.RS
+.RS
+.IP "3 => netcdf classic format"
+.IP "6 => netCDF 64-bit format"
+.IP "4 => netCDF-4 format (enhanced data model)"
+.IP "7 => netCDF-4 classic model format"
+.RE
+.RE
+The numeric code "7" is used because "7=3+4", specifying the format
+that uses the netCDF-3 data model for compatibility with the netCDF-4
+storage format for performance. Credit is due to NCO for use of these
+numeric codes instead of the old and confusing format numbers.
+.IP "\fB \-d \fP \fI n \fP"
+For netCDF-4 output, including netCDF-4 classic model, specify
+deflation level (level of compression) for variable data output. 0
+corresponds to no compression and 9 to maximum compression, with
+higher levels of compression requiring marginally more time to
+compress or uncompress than lower levels. Compression achieved may
+also depend on output chunking parameters. If this option is
+specified for a classic format or 64-bit offset format input file, it
+is not necessary to also specify that the output should be netCDF-4
+classic model, as that will be the default. If this option is not
+specified and the input file has compressed variables, the compression
+will still be preserved in the output, using the same chunking as in
+the input by default.
+.IP
+Note that \fBnccopy\fP requires all variables to be compressed using the
+same compression level, but the API has no such restriction. With
+a program you can customize compression for each variable independently.
+.IP "\fB \-s \fP"
+For netCDF-4 output, including netCDF-4 classic model, specify
+shuffling of variable data bytes before compression or after
+decompression. Shuffling refers to interlacing of bytes in a chunk so
+that the first bytes of all values are contiguous in storage, followed
+by all the second bytes, and so on, which often improves compression.
+This option is ignored unless a non-zero deflation level is specified.
+Using \-d0 to specify no deflation on input data that has been
+compressed and shuffled turns off both compression and shuffling in
+the output.
+.IP "\fB \-u \fP"
+Convert any unlimited size dimensions in the input to fixed size
+dimensions in the output. This can speed up variable-at-a-time
+access, but slow down record-at-a-time access to multiple variables
+along an unlimited dimension.
+.IP "\fB \-w \fP"
+Keep output in memory (as a diskless netCDF file) until output is
+closed, at which time output file is written to disk. This can
+greatly speedup operations such as converting unlimited dimension to
+fixed size (\-u option), chunking, rechunking, or compressing the
+input. It requires that available memory is large enough to hold the
+output file. This option may provide a larger speedup than careful
+tuning of the \-m, \-h, or \-e options, and it's certainly a lot simpler.
+.IP "\fB \-c \fP \fIchunkspec\fP"
+For netCDF-4 output, including netCDF-4 classic model, specify
+chunking (multidimensional tiling) for variable data in the output.
+This is useful to specify the units of disk access, compression, or
+other filters such as checksums. Changing the chunking in a netCDF
+file can also greatly speedup access, by choosing chunk shapes that
+are appropriate for the most common access patterns.
+.IP
+The \fIchunkspec\fP argument is a string of comma-separated associations,
+each specifying a dimension name, a '/' character, and optionally the
+corresponding chunk length for that dimension. No blanks should
+appear in the chunkspec string, except possibly escaped blanks that
+are part of a dimension name. A chunkspec names at least one
+dimension, and may omit dimensions which are not to be chunked or for
+which the default chunk length is desired. If a dimension name is
+followed by a '/' character but no subsequent chunk length, the actual
+dimension length is assumed. If copying a classic model file to a
+netCDF-4 output file and not naming all dimensions in the chunkspec,
+unnamed dimensions will also use the actual dimension length for the
+chunk length. An example of a chunkspec for variables that use 'm'
+and 'n' dimensions might be 'm/100,n/200' to specify 100 by 200
+chunks. To see the chunking resulting from copying with a chunkspec,
+use the '\-s' option of ncdump on the output file.
+.IP
+The chunkspec '/' that omits all dimension names and
+corresponding chunk lengths specifies that no chunking is to occur in
+the output, so can be used to unchunk all the chunked variables.
+To see the chunking resulting from copying with a chunkspec,
+use the '\-s' option of ncdump on the output file.
+.IP
+As an I/O optimization, \fBnccopy\fP has a threshold for the minimum size of
+non-record variables that get chunked, currently 8192 bytes. In the future,
+use of this threshold and its size may be settable in an option.
+.IP
+Note that \fBnccopy\fP requires variables that share a dimension to also
+share the chunk size associated with that dimension, but the
+programming interface has no such restriction. If you need to
+customize chunking for variables independently, you will need to use
+the library API in a custom utility program.
+.IP "\fB \-v \fP \fI var1,... \fP"
+The output will include data values for the specified variables, in
+addition to the declarations of all dimensions, variables, and
+attributes. One or more variables must be specified by name in the
+comma-delimited list following this option. The list must be a single
+argument to the command, hence cannot contain unescaped blanks or
+other white space characters. The named variables must be valid netCDF
+variables in the input-file. A variable within a group in a netCDF-4
+file may be specified with an absolute path name, such as
+"/GroupA/GroupA2/var". Use of a relative path name such as 'var' or
+"grp/var" specifies all matching variable names in the file. The
+default, without this option, is to include data values for \fI all \fP variables
+in the output.
+.IP "\fB \-V \fP \fI var1,... \fP"
+The output will include the specified variables only but all dimensions and
+global or group attributes. One or more variables must be specified by name in the
+comma-delimited list following this option. The list must be a single argument
+to the command, hence cannot contain unescaped blanks or other white space
+characters. The named variables must be valid netCDF variables in the
+input-file. A variable within a group in a netCDF-4 file may be specified with
+an absolute path name, such as '/GroupA/GroupA2/var'. Use of a relative path
+name such as 'var' or 'grp/var' specifies all matching variable names in the
+file. The default, without this option, is to include \fI all \fP variables in the
+output.
+.IP "\fB \-g \fP \fI grp1,... \fP"
+The output will include data values only for the specified groups.
+One or more groups must be specified by name in the comma-delimited
+list following this option. The list must be a single argument to the
+command. The named groups must be valid netCDF groups in the
+input-file. The default, without this option, is to include data values for all
+groups in the output.
+.IP "\fB \-G \fP \fI grp1,... \fP"
+The output will include only the specified groups.
+One or more groups must be specified by name in the comma-delimited
+list following this option. The list must be a single argument to the
+command. The named groups must be valid netCDF groups in the
+input-file. The default, without this option, is to include all groups in the
+output.
+.IP "\fB \-m \fP \fI bufsize \fP"
+An integer or floating-point number that specifies the size, in bytes,
+of the copy buffer used to copy large variables. A suffix of K, M, G,
+or T multiplies the copy buffer size by one thousand, million,
+billion, or trillion, respectively. The default is 5 Mbytes,
+but will be increased if necessary to hold at least one chunk of
+netCDF-4 chunked variables in the input file. You may want to specify
+a value larger than the default for copying large files over high
+latency networks. Using the '\-w' option may provide better
+performance, if the output fits in memory.
+.IP "\fB \-h \fP \fI chunk_cache \fP"
+For netCDF-4 output, including netCDF-4 classic model, an integer or
+floating-point number that specifies the size in bytes of chunk cache
+allocated for each chunked variable. This is not a property of the file, but merely
+a performance tuning parameter for avoiding compressing or
+decompressing the same data multiple times while copying and changing
+chunk shapes. A suffix of K, M, G, or T multiplies the chunk cache
+size by one thousand, million, billion, or trillion, respectively.
+The default is 4.194304 Mbytes (or whatever was specified for the
+configure-time constant CHUNK_CACHE_SIZE when the netCDF library was
+built). Ideally, the \fBnccopy\fP utility should accept only one memory
+buffer size and divide it optimally between a copy buffer and chunk
+cache, but no general algorithm for computing the optimum chunk cache
+size has been implemented yet. Using the '\-w' option may provide
+better performance, if the output fits in memory.
+.IP "\fB \-e \fP \fI cache_elems \fP"
+For netCDF-4 output, including netCDF-4 classic model, specifies
+number of chunks that the chunk cache can hold. A suffix of K, M, G,
+or T multiplies the number of chunks that can be held in the cache
+by one thousand, million, billion, or trillion, respectively. This is not a
+property of the file, but merely a performance tuning parameter for
+avoiding compressing or decompressing the same data multiple times
+while copying and changing chunk shapes. The default is 1009 (or
+whatever was specified for the configure-time constant
+CHUNK_CACHE_NELEMS when the netCDF library was built). Ideally, the
+\fBnccopy\fP utility should determine an optimum value for this parameter,
+but no general algorithm for computing the optimum number of chunk
+cache elements has been implemented yet.
+.IP "\fB \-r \fP"
+Read netCDF classic or 64-bit offset input file into a diskless netCDF
+file in memory before copying. Requires that input file be small
+enough to fit into memory. For \fBnccopy\fP, this doesn't seem to provide
+any significant speedup, so may not be a useful option.
+.SH EXAMPLES
+.LP
+Make a copy of foo1.nc, a netCDF file of any type, to foo2.nc, a
+netCDF file of the same type:
+.RS
+.HP
+nccopy foo1.nc foo2.nc
+.RE
+.LP
+Note that the above copy will not be as fast as use of cp or other
+simple copy utility, because the file is copied using only the netCDF
+API. If the input file has extra bytes after the end of the netCDF
+data, those will not be copied, because they are not accessible
+through the netCDF interface. If the original file was generated in
+"No fill" mode so that fill values are not stored for padding for data
+alignment, the output file may have different padding bytes.
+.LP
+Convert a netCDF-4 classic model file, compressed.nc, that uses compression,
+to a netCDF-3 file classic.nc:
+.RS
+.HP
+nccopy \-k classic compressed.nc classic.nc
+.RE
+.LP
+Note that 'nc3' could be used instead of 'classic'.
+.LP
+Download the variable 'time_bnds' and its associated attributes from
+an OPeNDAP server and copy the result to a netCDF file named 'tb.nc':
+.RS
+.HP
+nccopy 'http://test.opendap.org/opendap/data/nc/sst.mnmean.nc.gz?time_bnds' tb.nc
+.RE
+.LP
+Note that URLs that name specific variables as command-line arguments
+should generally be quoted, to avoid the shell interpreting special
+characters such as '?'.
+.LP
+Compress all the variables in the input file foo.nc, a netCDF file of any
+type, to the output file bar.nc:
+.RS
+.HP
+nccopy \-d1 foo.nc bar.nc
+.RE
+.LP
+If foo.nc was a classic or 64-bit offset netCDF file, bar.nc will be a
+netCDF-4 classic model netCDF file, because the classic and 64-bit
+offset format variants don't support compression. If foo.nc was a
+netCDF-4 file with some variables compressed using various deflation
+levels, the output will also be a netCDF-4 file of the same type, but
+all the variables, including any uncompressed variables in the input,
+will now use deflation level 1.
+.LP
+Assume the input data includes gridded variables that use time, lat,
+lon dimensions, with 1000 times by 1000 latitudes by 1000 longitudes,
+and that the time dimension varies most slowly. Also assume that
+users want quick access to data at all times for a small set of
+lat-lon points. Accessing data for 1000 times would typically require
+accessing 1000 disk blocks, which may be slow.
+.LP
+Reorganizing the data into chunks on disk that have all the time in
+each chunk for a few lat and lon coordinates would greatly speed up
+such access. To chunk the data in the input file slow.nc, a netCDF
+file of any type, to the output file fast.nc, you could use;
+.RS
+.HP
+nccopy \-c time/1000,lat/40,lon/40 slow.nc fast.nc
+.RE
+.LP
+to specify data chunks of 1000 times, 40 latitudes, and 40 longitudes.
+If you had enough memory to contain the output file, you could speed
+up the rechunking operation significantly by creating the output in
+memory before writing it to disk on close:
+.RS
+.HP
+nccopy \-w \-c time/1000,lat/40,lon/40 slow.nc fast.nc
+.RE
+.SH "SEE ALSO"
+.LP
+.BR ncdump(1), ncgen(1), netcdf(3)
diff --git a/privatemodules/nc4/share/man/man1/ncdump.1 b/privatemodules/nc4/share/man/man1/ncdump.1
new file mode 100644
index 0000000000000000000000000000000000000000..9e241bb887273ad2a0f2a280fffd729ecd2d6c9e
--- /dev/null
+++ b/privatemodules/nc4/share/man/man1/ncdump.1
@@ -0,0 +1,278 @@
+.\" $Header: /upc/share/CVS/netcdf-3/ncdump/ncdump.1,v 1.10 2009/07/28 14:48:36 russ Exp $
+.TH NCDUMP 1 "2012-03-08" "Release 4.2" "UNIDATA UTILITIES"
+.SH NAME
+ncdump \- Convert netCDF file to text form (CDL)
+.SH SYNOPSIS
+.ft B
+.HP
+ncdump
+.nh
+\%[\-chistxw]
+\%[\-v \fIvar1,...\fP]
+\%[\-b \fIlang\fP]
+\%[\-f \fIlang\fP]
+\%[\-l \fIlen\fP]
+\%[\-n \fIname\fP]
+\%[\-p \fIf_digits[,d_digits]\fP]
+\%[\-g \fIgrp1,...\fP]
+\%\fIfile\fP
+.br
+.ft B
+.HP
+ncdump
+.nh
+\%-k
+\%\fIfile\fP
+.hy
+.ft
+.SH DESCRIPTION
+.LP
+The \fBncdump\fP utility generates a text representation of a
+specified netCDF file on standard output, optionally excluding some or
+all of the variable data in the output. The text representation is in
+a form called CDL (network Common Data form Language) that can be
+viewed, edited, or serve as input to \fBncgen\fP, a companion program
+that can generate a binary netCDF file from a CDL file. Hence
+\fBncgen\fP and \fBncdump\fP can be used as inverses to transform the
+data representation between binary and text representations. See
+\fBncgen\fP documentation for a description of CDL and netCDF
+representations.
+.LP
+\fBncdump\fP may also be used to determine what kind of netCDF file is used
+(which variant of the netCDF file format) with the \-k option.
+.LP
+If DAP support was enabled when \fBncdump\fP was built, the file name
+may specify a DAP URL. This allows \fBncdump\fP to access data sources
+from DAP servers, including data in other formats than netCDF. When
+used with DAP URLs, \fBncdump\fP shows the translation from the DAP
+data model to the netCDF data model.
+.LP
+\fBncdump\fP may also be used as a simple browser for netCDF data
+files, to display the dimension names and lengths; variable names, types,
+and shapes; attribute names and values; and optionally, the values of
+data for all variables or selected variables in a netCDF file. For
+netCDF-4 files, groups and user-defined types are also included in
+ncdump output.
+.LP
+\fBncdump\fP uses `_' to represent data values that are equal to the
+`_FillValue' attribute for a variable, intended to represent data that
+has not yet been written. If a variable has no `_FillValue'
+attribute, the default fill value for the variable type is used unless
+the variable is of byte type.
+.LP
+\fBncdump\fP defines a default display format used for each type of
+netCDF data, but this can be changed if a `C_format' attribute is
+defined for a netCDF variable. In this case, \fBncdump\fP will use
+the `C_format' attribute to format each value. For example, if
+floating-point data for the netCDF variable `Z' is known to be
+accurate to only three significant digits, it would be appropriate to
+use the variable attribute
+
+.RS
+.HP
+Z:C_format = "%.3g"
+.RE
+.SH OPTIONS
+.IP "\fB-c\fP"
+Show the values of \fIcoordinate\fP variables (1D variables with the
+same names as dimensions) as well as the declarations of all
+dimensions, variables, attribute values, groups, and user-defined
+types. Data values of non-coordinate variables are not included in
+the output. This is usually the most suitable option to use for a brief look
+at the structure and contents of a netCDF file.
+.IP "\fB-h\fP"
+Show only the \fIheader\fP information in the output, that is, output only
+the declarations for the dimensions, variables, attributes,
+groups, and user-defined types of the input file, but no data values for
+any variables. The output is identical to using the \fB-c\fP option except
+that the values of coordinate variables are not included. (At most one of
+\fB-c\fP or \fB-h\fP options may be present.)
+.IP "\fB-v\fP \fIvar1,...\fP"
+The output will include data values for the specified variables, in
+addition to the declarations of all dimensions, variables, and
+attributes. One or more variables must be specified by name in the
+comma-delimited list following this option. The list must be a single
+argument to the command, hence cannot contain unescaped blanks or
+other white space characters. The named variables must be valid
+netCDF variables in the input-file. A variable within a group in a
+netCDF-4 file may be specified with an absolute path name, such as
+`/GroupA/GroupA2/var'. Use of a relative path name such as `var' or
+`grp/var' specifies all matching variable names in the file. The
+default, without this option and in the absence of the \fB-c\fP or
+\fB-h\fP options, is to include data values for \fIall\fP variables in
+the output.
+.IP "\fB-b\fP \fI[c|f]\fP"
+A brief annotation in the form of a CDL comment (text beginning with the
+characters ``//'') will be included in the data section of the output for
+each `row' of data, to help identify data values for multidimensional
+variables. If \fIlang\fP begins with `C' or `c', then C language
+conventions will be used (zero-based indices, last dimension varying
+fastest). If \fIlang\fP begins with `F' or `f', then Fortran language
+conventions will be used (one-based indices, first dimension varying
+fastest). In either case, the data will be presented in the same order;
+only the annotations will differ. This option may be useful for browsing
+through large volumes of multidimensional data.
+.IP "\fB-f\fP \fI[c|f]\fP"
+Full annotations in the form of trailing CDL comments (text beginning
+with the characters ``//'') for every data value (except individual
+characters in character arrays) will be included in the data section.
+If \fIlang\fP begins with `C' or `c', then C language conventions will
+be used. If \fIlang\fP begins with `F' or `f', then Fortran language
+conventions will be used. In either case, the data will be presented
+in the same order; only the annotations will differ. This option may
+be useful for piping data into other filters, since each data value
+appears on a separate line, fully identified. (At most one of '\-b' or '\-f' options may be present.)
+.IP "\fB-l\fP \fIlength\fP"
+Changes the default maximum line length (80) used in formatting lists of
+non-character data values.
+.IP "\fB-n\fP \fIname\fP"
+CDL requires a name for a netCDF file, for use by \fBncgen \-b\fP in
+generating a default netCDF file name. By default, \fIncdump\fP constructs
+this name from the last component of the file name of the input netCDF file
+by stripping off any extension it has. Use the \fB-n\fP option to specify a
+different name. Although the output file name used by \fBncgen \-b\fP can be
+specified, it may be wise to have \fIncdump\fP change the default name to
+avoid inadvertently overwriting a valuable netCDF file when using
+\fBncdump\fP, editing the resulting CDL file, and using \fBncgen \-b\fP to
+generate a new netCDF file from the edited CDL file.
+.IP "\fB-p\fP \fIfloat_digits[,double_digits]\fP"
+Specifies default precision (number of significant digits) to use in
+displaying floating-point or double precision data values for
+attributes and variables. If specified, this value overrides the
+value of the C_format attribute, if any, for a variable.
+Floating-point data will be displayed with \fIfloat_digits\fP
+significant digits. If \fIdouble_digits\fP is also specified,
+double-precision values will be displayed with that many significant
+digits. In the absence of any \fB-p\fP specifications, floating-point
+and double-precision data are displayed with 7 and 15 significant
+digits respectively. CDL files can be made smaller if less precision
+is required. If both floating-point and double precisions are
+specified, the two values must appear separated by a comma (no blanks)
+as a single argument to the command. (To represent every last bit of
+precision in a CDL file for all possible floating-point values
+would require \fB-p 9,17\fP.)
+.IP "\fB-k\fP"
+Show kind of netCDF file the pathname references, one of
+`classic', `64-bit offset',`netCDF-4', or `netCDF-4 classic model'. Before version
+3.6, there was only one kind of netCDF file, designated as `classic'
+(also know as format variant 1). Large file support introduced
+another variant of the format, designated as `64-bit offset' (known as
+format variant 2). NetCDF-4, uses a third variant of the format,
+`netCDF-4' (format variant 3). Another format variant, designated
+`netCDF-4 classic model' (format variant 4), is restricted
+to features supported by the netCDF-3 data model but represented using
+the HDF5 format, so that an unmodified netCDF-3 program can read or
+write the file just by relinking with the netCDF-4 library.
+The string output by using the `\-k' option may be provided as the
+value of the `\-k' option to ncgen(1) to
+specify exactly what kind of netCDF file to generate, when you want to
+override the default inferred from the CDL.
+.IP "\fB-s\fP"
+Output special virtual attributes that provide performance-related
+information about the file format and variable properties for netCDF-4
+data. These special virtual attributes are not actually part of the
+data, they are merely a convenient way to display miscellaneous
+properties of the data in CDL (and eventually NcML). They include
+`_ChunkSizes',
+`_DeflateLevel',
+`_Endianness',
+`_Fletcher32',
+`_Format',
+`_NoFill',
+`_Shuffle', and
+`_Storage'.
+`_ChunkSizes' is a list of chunk sizes for each dimension of the variable.
+`_DeflateLevel' is an
+integer between 0 and 9 inclusive if compression has been specified
+for the variable.
+`_Endianness' is either `little' or `big', depending on
+how the variable was stored when first written.
+`_Fletcher32' is `true' if the checksum property was set for
+the variable.
+`_Format' is a global attribute specifying the netCDF format
+variant, one of `classic', `64-bit offset', `netCDF-4', or `netCDF-4
+classic model'.
+`_NoFill' is `true' if the persistent NoFill property was set for the
+variable when it was defined.
+`_Shuffle' is `true' if use of the shuffle filter was specified for the variable.
+`_Storage' is `contiguous' or `chunked', depending on how the
+variable's data is stored.
+.IP "\fB-t\fP"
+Controls display of time data, if stored in a variable that uses
+a udunits compliant time representation such as `days since
+1970-01-01' or `seconds since 2009-03-15 12:01:17', a variable
+identified in a "bounds" attribute of such a time variable, or a numeric
+attribute of a time variable. If this option is
+specified, time data values are displayed as human-readable date-time
+strings rather than numerical values, interpreted in terms of a
+`calendar' variable attribute, if specified. For numeric attributes
+of time variables, the human-readable time value is displayed after the
+actual value, in an associated CDL comment. Calendar attribute
+values interpreted with this option include the CF Conventions values
+`gregorian' or `standard', `proleptic_gregorian', `noleap' or `365_day',
+`all_leap' or `366_day', `360_day', and `julian'.
+.IP "\fB-i\fP"
+Same as the '\-t' option, except output time data as date-time strings
+with ISO-8601 standard 'T' separator, instead of a blank.
+.IP "\fB-g\fP \fIgrp1,...\fP"
+For netCDF-4 files, the output will include data values only for the
+specified groups. One or more groups must be specified by name in the
+comma-delimited list following this option. The list must be a single
+argument to the command. The named groups must be valid netCDF groups
+in the input-file. A group in a netCDF-4 file may be specified with
+an absolute or relative path name. Use of a relative path name
+specifies all matching group names in the file. The default, without
+this option and in the absence of the \fB-c\fP or \fB-h\fP options, is
+to include data values for \fIall\fP groups in the output.
+.IP "\fB-w\fP"
+For file names that request remote access using DAP URLs, access data
+with client-side caching of entire variables.
+.IP "\fB-x\fP"
+Output XML (NcML) instead of CDL. The NcML does not include data values.
+The NcML output option currently only works for netCDF classic model data.
+.SH EXAMPLES
+.LP
+Look at the structure of the data in the netCDF file `\fBfoo.nc\fP':
+.RS
+.HP
+ncdump \-c foo.nc
+.RE
+.LP
+Produce an annotated CDL version of the structure and data in the
+netCDF file `\fBfoo.nc\fP', using C-style indexing for the annotations:
+.RS
+.HP
+ncdump \-b c foo.nc > foo.cdl
+.RE
+.LP
+Output data for only the variables `uwind' and `vwind' from the netCDF file
+`\fBfoo.nc\fP', and show the floating-point data with only three significant
+digits of precision:
+.RS
+.HP
+ncdump \-v uwind,vwind \-p 3 foo.nc
+.RE
+.LP
+Produce a fully-annotated (one data value per line) listing of the data for
+the variable `omega', using Fortran conventions for indices, and changing the
+netCDF dataset name in the resulting CDL file to `omega':
+.RS
+.HP
+ncdump \-v omega \-f fortran \-n omega foo.nc > Z.cdl
+.RE
+.SH "SEE ALSO"
+.LP
+.BR ncgen (1),
+.BR netcdf (3)
+.SH BUGS
+.LP
+Character arrays that contain a null-byte are treated like C strings, so no
+characters after the null byte appear in the output.
+.LP
+Multidimensional character string arrays are not handled well, since the CDL
+syntax for breaking a long character string into several shorter lines is
+weak.
+.LP
+There should be a way to specify that the data should be displayed in
+`record' order, that is with the all the values for `record' variables
+together that have the same value of the record dimension.
diff --git a/privatemodules/nc4/share/man/man1/ncgen.1 b/privatemodules/nc4/share/man/man1/ncgen.1
new file mode 100644
index 0000000000000000000000000000000000000000..77a87c247ddcc37fc931ed553bec82c3b91f1824
--- /dev/null
+++ b/privatemodules/nc4/share/man/man1/ncgen.1
@@ -0,0 +1,1240 @@
+.\" $Header: /upc/share/CVS/netcdf-3/ncgen/ncgen.1,v 1.10 2010/04/29 16:38:55 dmh Exp $
+.TH NCGEN 1 "$Date: 2010/04/29 16:38:55 $" "Printed: \n(yr-\n(mo-\n(dy" "UNIDATA UTILITIES"
+.SH NAME
+ncgen \- From a CDL file generate a netCDF-3 file, a netCDF-4 file or a C program
+.SH SYNOPSIS
+.HP
+ncgen
+.nh
+\%[\-b]
+\%[\-c]
+\%[\-f]
+\%[\-k \fIformat_name\fP]
+\%[\-\fIformat_code\fP]
+\%[\-l \fIoutput language\fP]
+\%[\-n]
+\%[\-o \fInetcdf_filename\fP]
+\%[\-x]
+\%[\fIinput_file\fP]
+.hy
+.ft
+.SH DESCRIPTION
+\fBncgen\fP generates either a netCDF-3 (i.e. classic) binary .nc file,
+a netCDF-4 (i.e. enhanced) binary .nc file
+or a file in some source language that when executed will
+construct the corresponding binary .nc file.
+The input to \fBncgen\fP is a description of a netCDF
+file in a small language known as CDL (network Common Data form Language),
+described below. Input is read from standard input if no input_file
+is specified.
+If no options are specified in invoking \fBncgen\fP, it merely checks the
+syntax of the input CDL file, producing error messages for
+any violations of CDL syntax. Other options can be used, for example,
+to create the corresponding netCDF file,
+or to generate a C program that uses the netCDF C
+interface to create the netCDF file.
+.LP
+Note that this version of ncgen was originally called ncgen4.
+The older ncgen program has been renamed to ncgen3.
+.LP
+\fBncgen\fP may be used with the companion program \fBncdump\fP to perform
+some simple operations on netCDF files. For example, to rename a dimension
+in a netCDF file, use \fBncdump\fP to get a CDL version of the netCDF file,
+edit the CDL file to change the name of the dimensions, and use \fBncgen\fP
+to generate the corresponding netCDF file from the edited CDL file.
+.SH OPTIONS
+.IP "\fB-b\fP"
+Create a (binary) netCDF file. If the \fB-o\fP option is absent, a
+default file name will be constructed from the basename of the CDL
+file, with any suffix replaced by the `.nc' extension. If a
+file already exists with the specified name, it will be overwritten.
+.IP "\fB-c\fP"
+Generate
+.B C
+source code that will create a netCDF file
+matching the netCDF specification. The C source code is written to
+standard output; equivalent to \-lc.
+.IP "\fB-f\fP"
+Generate
+.B FORTRAN 77
+source code that will create a netCDF file
+matching the netCDF specification.
+The source code is written to
+standard output; equivalent to \-lf77.
+.IP "\fB-o\fP \fRnetcdf_file\fP"
+Name of the file to pass to calls to "nc_create()".
+If this option is specified it implies
+(in the absence of any explicit \-l flag) the "\fB-b\fP" option.
+This option is necessary because netCDF files
+cannot be written directly to standard output, since standard output is not
+seekable.
+.IP "\fB-k \fIformat_name\fP"
+.IP "\fB-\fIformat_code\fP"
+The \-k flag specifies the format of the file to be created and, by inference,
+the data model accepted by ncgen (i.e. netcdf-3 (classic) versus
+netcdf-4 vs netcdf-5). As a shortcut, a numeric \fIformat_code\fP may be specified instead.
+The possible \fIformat_name\fP values for the \-k option are:
+.RS
+.RS
+.IP "'classic' or 'nc3' => netCDF classic format"
+.IP "'64-bit offset' or 'nc6' => netCDF 64-bit format"
+.IP "'64-bit data or 'nc5' => netCDF-5 (64-bit data) format"
+.IP "'netCDF-4' 0r 'nc4' => netCDF-4 format (enhanced data model)"
+.IP "'netCDF-4 classic model' or 'nc7' => netCDF-4 classic model format"
+.RE
+.RE
+Accepted \fIformat_number\fP arguments, just shortcuts for format_names, are:
+.RS
+.RS
+.IP "3 => netcdf classic format"
+.IP "5 => netcdf 5 format"
+.IP "6 => netCDF 64-bit format"
+.IP "4 => netCDF-4 format (enhanced data model)"
+.IP "7 => netCDF-4 classic model format"
+.RE
+.RE
+The numeric code "7" is used because "7=3+4", a mnemonic for the format
+that uses the netCDF-3 data model for compatibility with the netCDF-4
+storage format for performance. Credit is due to NCO for use of these
+numeric codes instead of the old and confusing format numbers.
+.LP
+Note: The old version format numbers '1', '2', '3', '4', equivalent
+to the format names 'nc3', 'nc6', 'nc4', or 'nc7' respectively, are
+also still accepted but deprecated, due to easy confusion between
+format numbers and format names. Various old format name aliases are
+also accepted but deprecated, e.g. 'hdf5', 'enhanced-nc3', etc.
+Also, note that \-v is accepted to mean the same thing as
+\-k for backward compatibility.
+.IP "\fB-x\fP"
+Don't initialize data with fill values. This can speed up creation of
+large netCDF files greatly, but later attempts to read unwritten data
+from the generated file will not be easily detectable.
+.IP "\fB-l \fRoutput_language\fP"
+The \-l flag specifies the output language to use
+when generating source code that will create or define a netCDF file
+matching the netCDF specification.
+The output is written to standard output.
+The currently supported languages have the following flags.
+.RS
+.RS
+.IP "c|C' => C language output."
+.IP "f77|fortran77' => FORTRAN 77 language output"
+; note that currently only the classic model is supported.
+.IP "j|java' => (experimental) Java language output"
+; targets the existing Unidata Java interface, which means that
+only the classic model is supported.
+.RE
+.RE
+.SH Choosing the output format
+The choice of output format is determined by three flags.
+.IP "\fB-k flag.\fP"
+.IP "\fB_Format attribute (see below).\fP"
+.IP "\fBOccurrence of CDF-5 (64-bit data) or
+netcdf-4 constructs in the input CDL.\fP"
+The term "netCDF-4 constructs" means
+constructs from the enhanced data model,
+not just special performance-related attributes such as
+ _ChunkSizes, _DeflateLevel, _Endianness, etc.
+The term "CDF-5 constructs" means
+extended unsigned integer types allowed in the 64-bit data model.
+.LP
+Note that there is an ambiguity between the netCDF-4 case
+and the CDF-5 case is only an unsigned type is seen in the input.
+.LP
+The rules are as follows, in order of application.
+.IP "\fB1.\fP"
+If either Fortran or Java output is specified,
+then \-k flag value of 1 (classic model) will be used.
+Conflicts with the use of enhanced constructs
+in the CDL will report an error.
+.IP "\fB2.\fP"
+If both the \-k flag and _Format attribute are specified,
+the _Format flag will be ignored.
+If no \-k flag is specified, and a _Format attribute value
+is specified, then the \-k flag value
+will be set to that of the _Format attribute.
+Otherwise the \-k flag is undefined.
+.IP "\fB3.\fP"
+If the \-k option is defined and is consistent with the CDL,
+ncgen will output a file in the requested form,
+else an error will be reported.
+.IP "\fB4.\fP"
+If the \-k flag is undefined,
+and if there are CDF-5 constructs, only, in the CDL,
+a \-k flag value of 5 (64-bit data model) will be used.
+If there are true netCDF-4 constructs in the CDL,
+a \-k flag value of 3 (enhanced model) will be used.
+.IP "\fB5.\fP"
+If special performance-related attributes are specified in the CDL,
+a \-k flag value of 4 (netCDF-4 classic model) will be used.
+.IP "\fB6.\fP"
+Otherwise ncgen will set the \-k flag to 1 (classic model).
+.RE
+.SH EXAMPLES
+.LP
+Check the syntax of the CDL file `\fBfoo.cdl\fP':
+.RS
+.HP
+ncgen foo.cdl
+.RE
+.LP
+From the CDL file `\fBfoo.cdl\fP', generate an equivalent binary netCDF file
+named `\fBx.nc\fP':
+.RS
+.HP
+ncgen \-o x.nc foo.cdl
+.RE
+.LP
+From the CDL file `\fBfoo.cdl\fP', generate a C program containing the
+netCDF function invocations necessary to create an equivalent binary netCDF
+file named `\fBx.nc\fP':
+.RS
+.HP
+ncgen \-lc foo.cdl >x.c
+.RE
+.LP
+.SH USAGE
+.SS "CDL Syntax Overview"
+.LP
+Below is an example of CDL syntax, describing a netCDF file with several
+named dimensions (lat, lon, and time), variables (Z, t, p, rh, lat, lon,
+time), variable attributes (units, long_name, valid_range, _FillValue),
+and some data. CDL keywords are in boldface. (This example is intended to
+illustrate the syntax; a real CDL file would have a more complete set of
+attributes so that the data would be more completely self-describing.)
+.RS
+.nf
+netcdf foo { // an example netCDF specification in CDL
+
+\fBtypes\fP:
+ \fIubyte\fP \fIenum\fP enum_t {Clear = 0, Cumulonimbus = 1, Stratus = 2};
+ \fIopaque\fP(11) opaque_t;
+ \fIint\fP(*) vlen_t;
+
+\fBdimensions\fP:
+ lat = 10, lon = 5, time = \fIunlimited\fP ;
+
+\fBvariables\fP:
+ \fIlong\fP lat(lat), lon(lon), time(time);
+ \fIfloat\fP Z(time,lat,lon), t(time,lat,lon);
+ \fIdouble\fP p(time,lat,lon);
+ \fIlong\fP rh(time,lat,lon);
+
+ \fIstring\fP country(time,lat,lon);
+ \fIubyte\fP tag;
+
+ // variable attributes
+ lat:long_name = "latitude";
+ lat:units = "degrees_north";
+ lon:long_name = "longitude";
+ lon:units = "degrees_east";
+ time:units = "seconds since 1992-1-1 00:00:00";
+
+ // typed variable attributes
+ \fIstring\fP Z:units = "geopotential meters";
+ \fIfloat\fP Z:valid_range = 0., 5000.;
+ \fIdouble\fP p:_FillValue = \-9999.;
+ \fIlong\fP rh:_FillValue = \-1;
+ \fIvlen_t\fP :globalatt = {17, 18, 19};
+\fBdata\fP:
+ lat = 0, 10, 20, 30, 40, 50, 60, 70, 80, 90;
+ lon = \-140, \-118, \-96, \-84, \-52;
+\fBgroup\fP: g {
+\fBtypes\fP:
+ \fIcompound\fP cmpd_t { \fIvlen_t\fP f1; \fIenum_t\fP f2;};
+} // group g
+\fBgroup\fP: h {
+\fBvariables\fP:
+ /g/\fIcmpd_t\fP compoundvar;
+\fBdata\fP:
+ compoundvar = { {3,4,5}, enum_t.Stratus } ;
+} // group h
+}
+.fi
+.RE
+.LP
+All CDL statements are terminated by a semicolon. Spaces, tabs,
+and newlines can be used freely for readability.
+Comments may follow the characters `//' on any line.
+.LP
+A CDL description consists of five optional parts:
+\fItypes\fP,
+\fIdimensions\fP,
+\fIvariables\fP,
+\fIdata\fP,
+beginning with the keyword
+.BR `types:' ,
+.BR `dimensions:' ,
+.BR `variables:' ,
+and
+.BR `data:',
+respectively.
+Note several things:
+(1) the keyword includes the trailing colon, so there must not be any space before the colon character,
+and (2) the keywords are required to be lower case.
+.LP
+The \fBvariables:\fP section may contain \fIvariable declarations\fP
+and \fIattribute assignments\fP.
+All sections may contain global attribute assignments.
+.LP
+In addition, after the \fBdata:\fP section, the user
+may define a series of groups (see the example above).
+Groups themselves can contain types, dimensions, variables,
+data, and other (nested) groups.
+.LP
+The netCDF \fBtypes:\fP section declares the user defined types.
+These may be constructed using any of the following types:
+\fBenum\fP, \fBvlen\fP, \fBopaque\fP, or \fBcompound\fP.
+.LP
+A netCDF \fIdimension\fP is used to define the shape of one or more of the
+multidimensional variables contained in the netCDF file. A netCDF
+dimension has a name and a size. A dimension
+can have the \fBunlimited\fP size, which means a variable using this
+dimension can grow to any length in that dimension.
+.LP
+A \fIvariable\fP represents a multidimensional array of values of the
+same type. A variable has a name, a data type, and a shape described
+by its list of dimensions. Each variable may also have associated
+\fIattributes\fP (see below) as well as data values. The name, data
+type, and shape of a variable are specified by its declaration in the
+\fIvariable\fP section of a CDL description. A variable may have the same
+name as a dimension; by convention such a variable is one-dimensional
+and contains coordinates of the dimension it names. Dimensions need
+not have corresponding variables.
+.LP
+A netCDF \fIattribute\fP contains information about a netCDF variable or
+about the whole netCDF dataset. Attributes are used
+to specify such properties as units, special values, maximum and
+minimum valid values, scaling factors, offsets, and parameters. Attribute
+information is represented by single values or arrays of values. For
+example, "units" is an attribute represented by a character array such
+as "celsius". An attribute has an associated variable, a name,
+a data type, a length, and a value. In contrast to variables that are
+intended for data, attributes are intended for metadata (data about
+data).
+Unlike netCDF-3, attribute types can be any user defined type
+as well as the usual built-in types.
+.LP
+In CDL, an attribute is designated by a
+a type, a variable, a ':', and then an attribute name.
+The type is optional and if missing, it will be inferred from the values
+assigned to the attribute.
+It is possible to assign \fIglobal\fP attributes
+not associated with any variable to the netCDF as a whole by omitting
+the variable name in the attribute declaration.
+Notice that there is a potential ambiguity in a specification such as
+.nf
+x : a = ...
+.fi
+In this situation, x could be either a type for a global attribute,
+or the variable name for an attribute. Since there could both be a type named
+x and a variable named x, there is an ambiguity.
+The rule is that in this situation, x will be interpreted as a
+type if possible, and otherwise as a variable.
+.LP
+If not specified, the data type of an attribute in CDL
+is derived from the type of the value(s) assigned to it. The length of
+an attribute is the number of data values assigned to it, or the
+number of characters in the character string assigned to it. Multiple
+values are assigned to non-character attributes by separating the
+values with commas. All values assigned to an attribute must be of
+the same type.
+.LP
+The names for CDL dimensions, variables, attributes, types, and groups
+may contain any non-control utf-8 character
+except the forward slash character (`/').
+However, certain characters must escaped if they are used in a name,
+where the escape character is the backward slash `\\'.
+In particular, if the leading character off the name is a digit (0-9),
+then it must be preceded by the escape character.
+In addition, the characters ` !"#$%&()*,:;<=>?[]^`\'{}|~\\'
+must be escaped if they occur anywhere in a name.
+Note also that attribute names that begin with an underscore (`_')
+are reserved for the use of Unidata and should not be used in user
+defined attributes.
+.LP
+Note also that the words
+`variable',
+`dimension',
+`data',
+`group',
+and `types'
+are legal CDL names, but be careful that there is a space
+between them and any following colon character when used as a variable name.
+This is mostly an issue with attribute declarations.
+For example, consider this.
+.HP
+.RS
+.nf
+ netcdf ... {
+ ...
+ variables:
+ int dimensions;
+ dimensions: attribute=0 ; // this will cause an error
+ dimensions : attribute=0 ; // this is ok.
+ ...
+ }
+.fi
+.RE
+.LP
+The optional \fBdata:\fP section of a CDL specification is where
+netCDF variables may be initialized. The syntax of an initialization
+is simple: a variable name, an equals sign, and a
+comma-delimited list of constants (possibly separated by spaces, tabs
+and newlines) terminated with a semicolon. For multi-dimensional
+arrays, the last dimension varies fastest. Thus row-order rather than
+column order is used for matrices. If fewer values are supplied than
+are needed to fill a variable, it is extended with a type-dependent
+`fill value', which can be overridden by supplying a value for a
+distinguished variable attribute named `_FillValue'. The
+types of constants need not match the type declared for a variable;
+coercions are done to convert integers to floating point, for example.
+The constant `_' can be used to designate the fill value for a variable.
+If the type of the variable is explicitly `string', then the special
+constant `NIL` can be used to represent a nil string, which is not the
+same as a zero length string.
+.SS "Primitive Data Types"
+.LP
+.RS
+.nf
+\fBchar\fP characters
+\fBbyte\fP 8-bit data
+\fBshort\fP 16-bit signed integers
+\fBint\fP 32-bit signed integers
+\fBlong\fP (synonymous with \fBint\fP)
+\fBint64\fP 64-bit signed integers
+\fBfloat\fP IEEE single precision floating point (32 bits)
+\fBreal\fP (synonymous with \fBfloat\fP)
+\fBdouble\fP IEEE double precision floating point (64 bits)
+\fBubyte\fP unsigned 8-bit data
+\fBushort\fP 16-bit unsigned integers
+\fBuint\fP 32-bit unsigned integers
+\fBuint64\fP 64-bit unsigned integers
+\fBstring\fP arbitrary length strings
+.fi
+.RE
+.LP
+CDL supports a superset of the primitive data types of C.
+The names for the primitive data types are reserved words in CDL,
+so the names of variables, dimensions, and attributes must not be
+primitive type names. In declarations, type names may be specified
+in either upper or lower case.
+.LP
+Bytes are intended to hold a full eight
+bits of data, and the zero byte has no special significance, as it
+mays for character data.
+\fBncgen\fP converts \fBbyte\fP declarations to \fBchar\fP
+declarations in the output C code and to the nonstandard \fBBYTE\fP
+declaration in output Fortran code.
+.LP
+Shorts can hold values between \-32768 and 32767.
+\fBncgen\fP converts \fBshort\fP declarations to \fBshort\fP
+declarations in the output C code and to the nonstandard \fBINTEGER*2\fP
+declaration in output Fortran code.
+.LP
+Ints can hold values between \-2147483648 and 2147483647.
+\fBncgen\fP converts \fBint\fP declarations to \fBint\fP
+declarations in the output C code and to \fBINTEGER\fP
+declarations in output Fortran code. \fBlong\fP
+is accepted as a synonym for \fBint\fP in CDL declarations, but is
+deprecated since there are now platforms with 64-bit representations
+for C longs.
+.LP
+Int64 can hold values between \-9223372036854775808
+and 9223372036854775807.
+\fBncgen\fP converts \fBint64\fP declarations to \fBlonglong\fP
+declarations in the output C code.
+.\" and to \fBINTEGER\fP declarations in output Fortran code.
+.LP
+Floats can hold values between about \-3.4+38 and 3.4+38. Their
+external representation is as 32-bit IEEE normalized single-precision
+floating point numbers. \fBncgen\fP converts \fBfloat\fP
+declarations to \fBfloat\fP declarations in the output C code and to
+\fBREAL\fP declarations in output Fortran code. \fBreal\fP is accepted
+as a synonym for \fBfloat\fP in CDL declarations.
+.LP
+Doubles can hold values between about \-1.7+308 and 1.7+308. Their
+external representation is as 64-bit IEEE standard normalized
+double-precision floating point numbers. \fBncgen\fP converts
+\fBdouble\fP declarations to \fBdouble\fP declarations in the output C
+code and to \fBDOUBLE PRECISION\fP declarations in output Fortran
+code.
+.LP
+The unsigned counterparts of the above integer types
+are mapped to the corresponding unsigned C types.
+Their ranges are suitably modified to start at zero.
+.LP
+The technical interpretation of the char type is that it is an unsigned
+8-bit value. The encoding of the 256 possible values
+is unspecified by default. A variable of char type
+may be marked with an "_Encoding" attribute to indicate
+the character set to be used: US-ASCII, ISO-8859-1, etc.
+Note that specifying the encoding of UTF-8 is equivalent to
+specifying US-ASCII
+This is because multi-byte UTF-8 characters cannot
+be stored in an 8-bit character. The only legal
+single byte UTF-8 values are by definition
+the 7-bit US-ASCII encoding with the top bit set to zero.
+.LP
+Strings are assumed by default to be encoded using UTF-8.
+Note that this means that multi-byte UTF-8 encodings may
+be present in the string, so it is possible that the number
+of distinct UTF-8 characters in a string is smaller than
+the number of 8-bit bytes used to store the string.
+.LP
+.SS "CDL Constants"
+.LP
+Constants assigned to attributes or variables may be of any of the
+basic netCDF types. The syntax for constants is similar to C syntax,
+except that type suffixes must be appended to shorts and floats to
+distinguish them from longs and doubles.
+.LP
+A \fIbyte\fP constant is represented by
+an integer constant with a `b' (or
+`B') appended. In the old netCDF-2 API, byte constants could also be
+represented using single characters or standard C character escape
+sequences such as `a' or `\n'. This is still supported for backward
+compatibility, but deprecated to make the distinction clear between
+the numeric byte type and the textual char type. Example byte
+constants include:
+.RS
+.nf
+ 0b // a zero byte
+ \-1b // \-1 as an 8-bit byte
+ 255b // also \-1 as a signed 8-bit byte
+.fi
+.RE
+.LP
+\fIshort\fP integer constants are intended for representing 16-bit
+signed quantities. The form of a \fIshort\fP constant is an integer
+constant with an `s' or `S' appended. If a \fIshort\fP constant
+begins with `0', it is interpreted as octal, except that if it begins with
+`0x', it is interpreted as a hexadecimal constant. For example:
+.RS
+.nf
+\-2s // a short \-2
+0123s // octal
+0x7ffs //hexadecimal
+.fi
+.RE
+.LP
+\fIint\fP integer constants are intended for representing 32-bit signed
+quantities. The form of an \fIint\fP constant is an ordinary integer
+constant, although it is acceptable to optionally append a single `l' or
+`L' (again, deprecated). Be careful, though, the L suffix is interpreted
+as a 32 bit integer, and never as a 64 bit integer. This can be confusing
+since the C long type can ambigously be either 32 bit or 64 bit.
+.LP
+If an \fIint\fP constant begins with `0', it is interpreted as
+octal, except that if it begins with `0x', it is interpreted as a hexadecimal
+constant (but see opaque constants below).
+Examples of valid \fIint\fP constants include:
+.RS
+.nf
+\-2
+1234567890L
+0123 // octal
+0x7ff // hexadecimal
+.fi
+.RE
+.LP
+\fIint64\fP integer constants are intended for representing 64-bit
+signed quantities. The form of an \fIint64\fP constant is an integer
+constant with an `ll' or `LL' appended. If an \fIint64\fP constant
+begins with `0', it is interpreted as octal, except that if it begins with
+`0x', it is interpreted as a hexadecimal constant. For example:
+.RS
+.nf
+\-2ll // an unsigned \-2
+0123LL // octal
+0x7ffLL //hexadecimal
+.fi
+.RE
+.LP
+Floating point constants of type \fIfloat\fP are appropriate for representing
+floating point data with about seven significant digits of precision.
+The form of a \fIfloat\fP constant is the same as a C floating point
+constant with an `f' or `F' appended. For example the following
+are all acceptable \fIfloat\fP constants:
+.RS
+.nf
+\-2.0f
+3.14159265358979f // will be truncated to less precision
+1.f
+
+.fi
+.RE
+.LP
+Floating point constants of type \fIdouble\fP are appropriate for
+representing floating point data with about sixteen significant digits
+of precision. The form of a \fIdouble\fP constant is the same as a C
+floating point constant. An optional `d' or `D' may be appended.
+For example the following are all acceptable \fIdouble\fP constants:
+.RS
+.nf
+\-2.0
+3.141592653589793
+1.0e-20
+1.d
+.fi
+.RE
+.LP
+Unsigned integer constants can be created by appending
+the character 'U' or 'u' between the constant and any trailing
+size specifier, or immediately at the end of the size specifier.
+Thus one could say
+10U, 100su, 100000ul, or 1000000llu, for example.
+.LP
+Single character constants may be enclosed in single quotes.
+If a sequence of one or more characters is enclosed
+in double quotes, then its interpretation must be inferred
+from the context. If the dataset is created using the netCDF
+classic model, then all such constants are interpreted
+as a character array, so each character in the constant
+is interpreted as if it were a single character.
+If the dataset is netCDF extended, then the constant may
+be interpreted as for the classic model or as a true string
+(see below) depending on the type of the attribute or variable
+into which the string is contained.
+.LP
+The interpretation of char constants is that those
+that are in the printable ASCII range (' '..'~') are assumed to
+be encoded as the 1-byte subset ofUTF-8, which is equivalent to US-ASCII.
+In all cases, the usual C string escape conventions are honored
+for values from 0 thru 127. Values greater than 127 are allowed,
+but their encoding is undefined.
+For netCDF extended, the use of the char type is deprecated
+in favor of the string type.
+.LP
+Some character constant examples are as follows.
+.RS
+.nf
+ 'a' // ASCII `a'
+ "a" // equivalent to 'a'
+ "Two\\nlines\\n" // a 10-character string with two embedded newlines
+ "a bell:\\007" // a string containing an ASCII bell
+.fi
+.RE
+Note that the netCDF character array "a" would fit in a one-element
+variable, since no terminating NULL character is assumed. However, a zero
+byte in a character array is interpreted as the end of the significant
+characters by the \fBncdump\fP program, following the C convention.
+Therefore, a NULL byte should not be embedded in a character string unless
+at the end: use the \fIbyte\fP data type instead for byte arrays that
+contain the zero byte.
+.LP
+\fIString\fP constants are, like character constants,
+represented using double quotes. This represents a potential
+ambiguity since a multi-character string may also indicate
+a dimensioned character value. Disambiguation usually occurs
+by context, but care should be taken to specify the\fIstring\fP
+type to ensure the proper choice.
+String constants are assumed to always be UTF-8 encoded. This
+specifically means that the string constant may actually
+contain multi-byte UTF-8 characters.
+The special constant `NIL` can be used to represent a nil string, which is not the
+same as a zero length string.
+.LP
+\fIOpaque\fP constants are represented as
+sequences of hexadecimal digits preceded by 0X or 0x: 0xaa34ffff,
+for example.
+These constants can still be used as integer constants
+and will be either truncated or extended as necessary.
+.SS "Compound Constant Expressions"
+.LP
+In order to assign values to variables (or attributes)
+whose type is user-defined type, the constant notation has been
+extended to include sequences of constants enclosed in curly
+brackets (e.g. "{"..."}").
+Such a constant is called a compound constant, and compound constants
+can be nested.
+.LP
+Given a type "T(*) vlen_t", where T is some other arbitrary base type,
+constants for this should be specified as follows.
+.nf
+ vlen_t var[2] = {t11,t12,...t1N}, {t21,t22,...t2m};
+.fi
+The values tij, are assumed to be constants of type T.
+.LP
+Given a type "compound cmpd_t {T1 f1; T2 f2...Tn fn}",
+where the Ti are other arbitrary base types,
+constants for this should be specified as follows.
+.nf
+ cmpd_t var[2] = {t11,t12,...t1N}, {t21,t22,...t2n};
+.fi
+The values tij, are assumed to be constants of type Ti.
+If the fields are missing, then they will be set using any
+specified or default fill value for the field's base type.
+.LP
+The general set of rules for using braces are defined in the
+.B Specifying
+.B Datalists
+section below.
+.LP
+.SS "Scoping Rules"
+.LP
+With the addition of groups, the name space for defined objects
+is no longer flat. References (names)
+of any type, dimension, or variable may be prefixed
+with the absolute path specifying a specific declaration.
+Thus one might say
+.nf
+ variables:
+ /g1/g2/t1 v1;
+.fi
+The type being referenced (t1) is the one within group g2, which in
+turn is nested in group g1.
+The similarity of this notation to Unix file paths is deliberate,
+and one can consider groups as a form of directory structure.
+.LP
+When name is not prefixed, then scope rules are applied to locate the
+specified declaration. Currently, there are three rules: one for dimensions,
+one for types and enumeration constants, and one for all others.
+.HP
+When an unprefixed name of a dimension is used (as in a
+variable declaration), ncgen first looks in the immediately
+enclosing group for the dimension. If it is not found
+there, then it looks in the group enclosing this group.
+This continues up the group hierarchy until the dimension is
+found, or there are no more groups to search.
+.HP
+2. When an unprefixed name of a type or an enumeration constant
+is used, ncgen searches the group tree using a pre-order depth-first
+search. This essentially means that it will find the matching declaration
+that precedes the reference textually in the cdl file and that
+is "highest" in the group hierarchy.
+.HP
+3. For all other names, only the immediately enclosing group is searched.
+.LP
+One final note. Forward references are not allowed.
+This means that specifying, for example,
+/g1/g2/t1 will fail if this reference occurs before g1 and/or g2 are defined.
+.SS "Specifying Enumeration Constants"
+.LP
+References to Enumeration constants (in data lists) can be ambiguous
+since the same enumeration constant name can be defined in more than
+one enumeration. If a cdl file specified an ambiguous constant,
+then ncgen will signal an error. Such constants can be disambiguated
+in two ways.
+.IP "\fB1.\fP"
+Prefix the enumeration constant with the name of the enumeration separated
+by a dot: \fIenum.econst\fP, for example.
+.IP "\fB2.\fP"
+If case one is not sufficient to disambiguate the enumeration constant,
+then one must specify the precise enumeration type using
+a group path: \fI/g1/g2/enum.econst\fP, for example.
+.SS "Special Attributes"
+.LP
+Special, virtual, attributes can be specified to provide
+performance-related information about the file format and
+about variable properties.
+The file must be a netCDF-4 file for these to take effect.
+.LP
+These special virtual attributes are not actually part of the file,
+they are merely a convenient way to set miscellaneous
+properties of the data in CDL
+.LP
+The special attributes currently supported are as follows:
+`_Format',
+`_Fletcher32,
+`_ChunkSizes',
+`_Endianness',
+`_DeflateLevel',
+`_Shuffle', and
+`_Storage'.
+.LP
+`_Format' is a global attribute specifying the netCDF format
+variant. Its value must be a single string
+matching one of `classic', `64-bit offset', `64-bit data', `netCDF-4', or
+`netCDF-4 classic model'.
+.LP
+The rest of the special attributes are all variable attributes.
+Essentially all of then map to some corresponding `nc_def_var_XXX'
+function as defined in the netCDF-4 API.
+For the attributes that are essentially boolean (_Fletcher32, _Shuffle,
+and _NOFILL), the value true can be specified by using the strings
+`true' or `1', or by using the integer 1.
+The value false expects either `false', `0', or the integer 0.
+The actions associated with these attributes are as follows.
+.IP 1. 3
+`_Fletcher32 sets the `fletcher32' property for a variable.
+.IP 2. 3
+`_Endianness' is either `little' or `big', depending on
+how the variable is stored when first written.
+.IP 3. 3
+`_DeflateLevel' is an
+integer between 0 and 9 inclusive if compression has been specified
+for the variable.
+.IP 4. 3
+`_Shuffle' specifies if the the shuffle filter should be used.
+.IP 5. 3
+`_Storage' is `contiguous' or `chunked'.
+.IP 6. 3
+`_ChunkSizes' is a list of chunk sizes for each dimension of
+the variable
+.LP
+Note that attributes such as "add_offset" or "scale_factor"
+have no special meaning to ncgen. These attributes are
+currently conventions, handled above the library layer by
+other utility packages, for example NCO.
+.LP
+.SS "Specifying Datalists"
+.LP
+Specifying datalists for variables in the `data:` section can be somewhat
+complicated. There are some rules that must be followed
+to ensure that datalists are parsed correctly by ncgen.
+.LP
+First, the top level is automatically assumed to be a list of items, so it should not be inside {...}.
+That means that if the variable is a scalar, there will be a single top-level element
+and if the variable is an array, there will be N top-level elements.
+For each element of the top level list, the following rules should be applied.
+.IP 1. 3
+Instances of UNLIMITED dimensions (other than the first dimension) must be surrounded by {...} in order to specify the size.
+.IP 2. 3
+Compound instances must be embedded in {...}
+.IP 3. 3
+Non-scalar fields of compound instances must be embedded in {...}.
+.IP 4. 3
+Instances of vlens must be surrounded by {...} in order to specify the size.
+.LP
+Datalists associated with attributes are implicitly a vector (i.e., a list) of values of the type of the attribute and the above rules must apply with that in mind.
+.IP 7. 3
+No other use of braces is allowed.
+.LP
+Note that one consequence of these rules is that
+arrays of values cannot have subarrays within braces.
+Consider, for example, int var(d1)(d2)...(dn),
+where none of d2...dn are unlimited.
+A datalist for this variable must be a single list of integers,
+where the number of integers is no more than D=d1*d2*...dn values;
+note that the list can be less than D, in which case fill values
+will be used to pad the list.
+.LP
+Rule 6 about attribute datalist has the following consequence.
+If the type of the attribute is a compound (or vlen) type, and if
+the number of entries in the list is one, then the compound instances
+must be enclosed in braces.
+.LP
+.SS "Specifying Character Datalists"
+.LP
+Specifying datalists for variables of type char also has some
+complications. consider, for example
+.RS
+.nf
+dimensions: u=UNLIMITED; d1=1; d2=2; d3=3;
+ d4=4; d5=5; u2=UNLIMITED;
+variables: char var(d4,d5);
+datalist: var="1", "two", "three";
+.fi
+.RE
+.LP
+We have twenty elements of var to fill (d5 X d4)
+and we have three strings of length 1, 3, 5.
+How do we assign the characters in the strings to the
+twenty elements?
+.LP
+This is challenging because it is desirable to mimic
+the original ncgen (ncgen3).
+The core algorithm is notionally as follows.
+.IP 1. 3
+Assume we have a set of dimensions D1..Dn,
+where D1 may optionally be an Unlimited dimension.
+It is assumed that the sizes of the Di are all known
+(including unlimited dimensions).
+.IP 2. 3
+Given a sequence of string or character constants
+C1..Cm, our goal is to construct a single string
+whose length is the cross product of D1 thru Dn.
+Note that for purposes of this algorithm, character constants
+are treated as strings of size 1.
+.IP 3. 3
+Construct Dx = cross product of D1 thru D(n-1).
+.IP 4. 3
+For each constant Ci, add fill characters as needed
+so that its length is a multiple of Dn.
+.IP 5. 3
+Concatenate the modified C1..Cm to produce string S.
+.IP 6. 3
+Add fill characters to S to make its length be a multiple of Dn.
+.IP 8. 3
+If S is longer than the Dx * Dn, then truncate
+and generate a warning.
+.LP
+There are three other cases of note.
+.IP 1. 3
+If there is only a single, unlimited dimension,
+then all of the constants are concatenated
+and fill characters are added to the
+end of the resulting string to make its
+length be that of the unlimited dimension.
+If the length is larger than
+the unlimited dimension, then it is truncated
+with a warning.
+.IP 2. 3
+For the case of character typed vlen, "char(*) vlen_t" for example.
+we simply concatenate all the constants with no filling at all.
+.IP 3. 3
+For the case of a character typed attribute,
+we simply concatenate all the constants.
+.LP
+In netcdf-4, dimensions other than the first can be unlimited.
+Of course by the rules above, the interior unlimited instances
+must be delimited by {...}. For example.
+.in +5
+.nf
+variables: char var(u,u2);
+datalist: var={"1", "two"}, {"three"};
+.fi
+.in -5
+In this case u will have the effective length of two.
+Within each instance of u2, the rules above will apply, leading
+to this.
+.in +5
+datalist: var={"1","t","w","o"}, {"t","h","r","e","e"};
+.in -5
+The effective size of u2 will be the max of the two instance lengths
+(five in this case)
+and the shorter will be padded to produce this.
+.in +5
+datalist: var={"1","t","w","o","\\0"}, {"t","h","r","e","e"};
+.in -5
+.LP
+Consider an even more complicated case.
+.in +5
+.nf
+variables: char var(u,u2,u3);
+datalist: var={{"1", "two"}}, {{"three"},{"four","xy"}};
+.fi
+.in -5
+In this case u again will have the effective length of two.
+The u2 dimensions will have a size = max(1,2) = 2;
+Within each instance of u2, the rules above will apply, leading to this.
+.in +5
+.nf
+datalist: var={{"1","t","w","o"}}, {{"t","h","r","e","e"},{"f","o","u","r","x","y"}};
+.fi
+.in -5
+The effective size of u3 will be the max of the two instance lengths
+(six in this case) and the shorter ones will be padded to produce this.
+.in +5
+.nf
+datalist: var={{"1","t","w","o","\0","\0"}}, {{"t","h","r","e","e","\0"},{"f","o","u","r","x","y"}};
+.fi
+.in -5
+Note however that the first instance of u2 is less than the max length
+of u2, so we need to add a filler for another instance of u2, producing this.
+.in +5
+.nf
+datalist: var={{"1","t","w","o","\0","\0"},{"\0","\0","\0","\0","\0","\0"}}, {{"t","h","r","e","e","\0"},{"f","o","u","r","x","y"}};
+.fi
+.in -5
+
+.SH BUGS
+.LP
+The programs generated by \fBncgen\fP when using the \fB-c\fP flag
+use initialization statements to store data in variables, and will fail to
+produce compilable programs if you try to use them for large datasets, since
+the resulting statements may exceed the line length or number of
+continuation statements permitted by the compiler.
+.LP
+The CDL syntax makes it easy to assign what looks like an array of
+variable-length strings to a netCDF variable, but the strings may simply be
+concatenated into a single array of characters.
+Specific use of the \fIstring\fP type specifier may solve the problem
+
+.SH "CDL Grammar"
+.LP
+The file ncgen.y is the definitive grammar for CDL, but a stripped
+down version is included here for completeness.
+.RS
+.nf
+ncdesc: NETCDF
+ datasetid
+ rootgroup
+ ;
+
+datasetid: DATASETID
+
+rootgroup: '{'
+ groupbody
+ subgrouplist
+ '}';
+
+groupbody:
+ attrdecllist
+ typesection
+ dimsection
+ vasection
+ datasection
+ ;
+
+subgrouplist:
+ /*empty*/
+ | subgrouplist namedgroup
+ ;
+
+namedgroup: GROUP ident '{'
+ groupbody
+ subgrouplist
+ '}'
+ attrdecllist
+ ;
+
+typesection: /* empty */
+ | TYPES
+ | TYPES typedecls
+ ;
+
+typedecls:
+ type_or_attr_decl
+ | typedecls type_or_attr_decl
+ ;
+
+typename: ident ;
+
+type_or_attr_decl:
+ typedecl
+ | attrdecl ';'
+ ;
+
+typedecl:
+ enumdecl optsemicolon
+ | compounddecl optsemicolon
+ | vlendecl optsemicolon
+ | opaquedecl optsemicolon
+ ;
+
+optsemicolon:
+ /*empty*/
+ | ';'
+ ;
+
+enumdecl: primtype ENUM typename ;
+
+enumidlist: enumid
+ | enumidlist ',' enumid
+ ;
+
+enumid: ident '=' constint ;
+
+opaquedecl: OPAQUE '(' INT_CONST ')' typename ;
+
+vlendecl: typeref '(' '*' ')' typename ;
+
+compounddecl: COMPOUND typename '{' fields '}' ;
+
+fields: field ';'
+ | fields field ';'
+ ;
+
+field: typeref fieldlist ;
+
+primtype: CHAR_K
+ | BYTE_K
+ | SHORT_K
+ | INT_K
+ | FLOAT_K
+ | DOUBLE_K
+ | UBYTE_K
+ | USHORT_K
+ | UINT_K
+ | INT64_K
+ | UINT64_K
+ ;
+
+dimsection: /* empty */
+ | DIMENSIONS
+ | DIMENSIONS dimdecls
+ ;
+
+dimdecls: dim_or_attr_decl ';'
+ | dimdecls dim_or_attr_decl ';'
+ ;
+
+dim_or_attr_decl: dimdeclist | attrdecl ;
+
+dimdeclist: dimdecl
+ | dimdeclist ',' dimdecl
+ ;
+
+dimdecl:
+ dimd '=' UINT_CONST
+ | dimd '=' INT_CONST
+ | dimd '=' DOUBLE_CONST
+ | dimd '=' NC_UNLIMITED_K
+ ;
+
+dimd: ident ;
+
+vasection: /* empty */
+ | VARIABLES
+ | VARIABLES vadecls
+ ;
+
+vadecls: vadecl_or_attr ';'
+ | vadecls vadecl_or_attr ';'
+ ;
+
+vadecl_or_attr: vardecl | attrdecl ;
+
+vardecl: typeref varlist ;
+
+varlist: varspec
+ | varlist ',' varspec
+ ;
+
+varspec: ident dimspec ;
+
+dimspec: /* empty */
+ | '(' dimlist ')'
+ ;
+
+dimlist: dimref
+ | dimlist ',' dimref
+ ;
+
+dimref: path ;
+
+fieldlist:
+ fieldspec
+ | fieldlist ',' fieldspec
+ ;
+
+fieldspec: ident fielddimspec ;
+
+fielddimspec: /* empty */
+ | '(' fielddimlist ')'
+ ;
+
+fielddimlist:
+ fielddim
+ | fielddimlist ',' fielddim
+ ;
+
+fielddim:
+ UINT_CONST
+ | INT_CONST
+ ;
+
+/* Use this when referencing defined objects */
+varref: type_var_ref ;
+
+typeref: type_var_ref ;
+
+type_var_ref:
+ path
+ | primtype
+ ;
+
+/* Use this for all attribute decls */
+/* Watch out; this is left recursive */
+attrdecllist: /*empty*/ | attrdecl ';' attrdecllist ;
+
+attrdecl:
+ ':' ident '=' datalist
+ | typeref type_var_ref ':' ident '=' datalist
+ | type_var_ref ':' ident '=' datalist
+ | type_var_ref ':' _FILLVALUE '=' datalist
+ | typeref type_var_ref ':' _FILLVALUE '=' datalist
+ | type_var_ref ':' _STORAGE '=' conststring
+ | type_var_ref ':' _CHUNKSIZES '=' intlist
+ | type_var_ref ':' _FLETCHER32 '=' constbool
+ | type_var_ref ':' _DEFLATELEVEL '=' constint
+ | type_var_ref ':' _SHUFFLE '=' constbool
+ | type_var_ref ':' _ENDIANNESS '=' conststring
+ | type_var_ref ':' _NOFILL '=' constbool
+ | ':' _FORMAT '=' conststring
+ ;
+
+path:
+ ident
+ | PATH
+ ;
+
+datasection: /* empty */
+ | DATA
+ | DATA datadecls
+ ;
+
+datadecls:
+ datadecl ';'
+ | datadecls datadecl ';'
+ ;
+
+datadecl: varref '=' datalist ;
+datalist:
+ datalist0
+ | datalist1
+ ;
+
+datalist0:
+ /*empty*/
+ ;
+
+/* Must have at least 1 element */
+datalist1:
+ dataitem
+ | datalist ',' dataitem
+ ;
+
+dataitem:
+ constdata
+ | '{' datalist '}'
+ ;
+
+constdata:
+ simpleconstant
+ | OPAQUESTRING
+ | FILLMARKER
+ | NIL
+ | econstref
+ | function
+ ;
+
+econstref: path ;
+
+function: ident '(' arglist ')' ;
+
+arglist:
+ simpleconstant
+ | arglist ',' simpleconstant
+ ;
+
+simpleconstant:
+ CHAR_CONST /* never used apparently*/
+ | BYTE_CONST
+ | SHORT_CONST
+ | INT_CONST
+ | INT64_CONST
+ | UBYTE_CONST
+ | USHORT_CONST
+ | UINT_CONST
+ | UINT64_CONST
+ | FLOAT_CONST
+ | DOUBLE_CONST
+ | TERMSTRING
+ ;
+
+intlist:
+ constint
+ | intlist ',' constint
+ ;
+
+constint:
+ INT_CONST
+ | UINT_CONST
+ | INT64_CONST
+ | UINT64_CONST
+ ;
+
+conststring: TERMSTRING ;
+
+constbool:
+ conststring
+ | constint
+ ;
+
+/* Push all idents thru here for tracking */
+ident: IDENT ;
+.fi
+.RE
diff --git a/privatemodules/nc4/share/man/man1/ncgen3.1 b/privatemodules/nc4/share/man/man1/ncgen3.1
new file mode 100644
index 0000000000000000000000000000000000000000..fe36727489dbd865ce685d74c89011a4749a1f3e
--- /dev/null
+++ b/privatemodules/nc4/share/man/man1/ncgen3.1
@@ -0,0 +1,373 @@
+.\" $Header: /upc/share/CVS/netcdf-3/ncgen3/ncgen3.1,v 1.1 2009/09/24 18:19:10 dmh Exp $
+.TH NCGEN3 1 "$Date: 2009/09/24 18:19:10 $" "Printed: \n(yr-\n(mo-\n(dy" "UNIDATA UTILITIES"
+.SH NAME
+ncgen3 \- From a CDL file generate a netCDF classic or 64 bit classicfile,
+a C program, or a Fortran program
+.SH SYNOPSIS
+.HP
+ncgen3
+.nh
+\%[\-b]
+\%[\-c]
+\%[\-f]
+\%[\-k \fIkind_of_file\fP]
+\%[\-x]
+\%[\-n]
+\%[\-o \fInetcdf_filename\fP]
+\%\fIinput_file\fP
+.hy
+.ft
+.SH DESCRIPTION
+\fBncgen3\fP generates either a netCDF file, or C or Fortran source code to
+create a netCDF file. The input to \fBncgen3\fP is a description of a netCDF
+file in a small language known as CDL (network Common Data form Language),
+described below.
+If no options are specified in invoking \fBncgen3\fP, it merely checks the
+syntax of the input CDL file, producing error messages for
+any violations of CDL syntax. Other options can be used to create the
+corresponding netCDF file, to generate a C program that uses the netCDF C
+interface to create the netCDF file, or to generate a Fortran program that
+uses the netCDF Fortran interface to create the same netCDF file.
+.LP
+\fBncgen3\fP may be used with the companion program \fBncdump\fP to perform
+some simple operations on netCDF files. For example, to rename a dimension
+in a netCDF file, use \fBncdump\fP to get a CDL version of the netCDF file,
+edit the CDL file to change the name of the dimensions, and use \fBncgen3\fP
+to generate the corresponding netCDF file from the edited CDL file.
+.SH OPTIONS
+.IP "\fB-b\fP"
+Create a (binary) netCDF file. If the \fB-o\fP option is absent, a default
+file name will be constructed from the netCDF name (specified after the
+\fBnetcdf\fP keyword in the input) by appending the `.nc' extension. If a
+file already exists with the specified name, it will be overwritten.
+.IP "\fB-c\fP"
+Generate
+.B C
+source code that will create a netCDF file
+matching the netCDF specification. The C source code is written to
+standard output.
+.IP "\fB-f\fP"
+Generate
+.B Fortran
+source code that will create a netCDF file
+matching the netCDF specification. The Fortran source code is written
+to standard output.
+.IP "\fB-o\fP \fRnetcdf_file\fP"
+Name for the binary netCDF file created. If this option is specified, it implies
+the "\fB-b\fP" option. (This option is necessary because netCDF files
+cannot be written directly to standard output, since standard output is not
+seekable.)
+.IP "\fB-k \fRkind_of_file\fP"
+Using \-k2 or \-k "64-bit offset" specifies that
+generated file (or program) should use version 2 of format that
+employs 64-bit file offsets. The default is to use version 1
+("classic") format with 32-bit file offsets, although this limits the
+size of the netCDF file, variables, and records to the sizes supported
+by the classic format. (NetCDF-4 will support additional kinds of
+netCDF files, "netCDF-4" and "netCDF-4 classic model".)
+Note: \-v is also accepted to mean the same thing as
+\-k for backward compatibility, but \-k is preferred, to match
+the corresponding ncdump option.
+.IP "\fB-x\fP"
+Don't initialize data with fill values. This can speed up creation of
+large netCDF files greatly, but later attempts to read unwritten data
+from the generated file will not be easily detectable.
+.SH EXAMPLES
+.LP
+Check the syntax of the CDL file `\fBfoo.cdl\fP':
+.RS
+.HP
+ncgen3 foo.cdl
+.RE
+.LP
+From the CDL file `\fBfoo.cdl\fP', generate an equivalent binary netCDF file
+named `\fBx.nc\fP':
+.RS
+.HP
+ncgen3 \-o x.nc foo.cdl
+.RE
+.LP
+From the CDL file `\fBfoo.cdl\fP', generate a C program containing the
+netCDF function invocations necessary to create an equivalent binary netCDF
+file named `\fBx.nc\fP':
+.RS
+.HP
+ncgen3 \-c \-o x.nc foo.cdl
+.RE
+.LP
+.SH USAGE
+.SS "CDL Syntax Summary"
+.LP
+Below is an example of CDL syntax, describing a netCDF file with several
+named dimensions (lat, lon, and time), variables (Z, t, p, rh, lat, lon,
+time), variable attributes (units, long_name, valid_range, _FillValue), and
+some data. CDL keywords are in boldface. (This example is intended to
+illustrate the syntax; a real CDL file would have a more complete set of
+attributes so that the data would be more completely self-describing.)
+
+.RS
+.nf
+\fBnetcdf\fP foo { // an example netCDF specification in CDL
+
+\fBdimensions\fP:
+ lat = 10, lon = 5, time = \fBunlimited\fP ;
+
+\fBvariables\fP:
+ \fBlong\fP lat(lat), lon(lon), time(time);
+ \fBfloat\fP Z(time,lat,lon), t(time,lat,lon);
+ \fBdouble\fP p(time,lat,lon);
+ \fBlong\fP rh(time,lat,lon);
+
+ // variable attributes
+ lat:long_name = "latitude";
+ lat:units = "degrees_north";
+ lon:long_name = "longitude";
+ lon:units = "degrees_east";
+ time:units = "seconds since 1992-1-1 00:00:00";
+ Z:units = "geopotential meters";
+ Z:valid_range = 0., 5000.;
+ p:_FillValue = \-9999.;
+ rh:_FillValue = \-1;
+
+\fBdata\fP:
+ lat = 0, 10, 20, 30, 40, 50, 60, 70, 80, 90;
+ lon = \-140, \-118, \-96, \-84, \-52;
+}
+.fi
+.RE
+.LP
+All CDL statements are terminated by a semicolon. Spaces, tabs,
+and newlines can be used freely for readability.
+Comments may follow the characters `//' on any line.
+.LP
+A CDL description consists of three optional parts: \fIdimensions\fP,
+\fIvariables\fP, and \fIdata\fP, beginning with the keyword
+.BR dimensions: ,
+.BR variables: ,
+and
+.BR data ,
+respectively.
+The variable part may contain \fIvariable
+declarations\fP and \fIattribute assignments\fP.
+.LP
+A netCDF \fIdimension\fP is used to define the shape of one or more of the
+multidimensional variables contained in the netCDF file. A netCDF
+dimension has a name and a size. At most one dimension in a netCDF file
+can have the \fBunlimited\fP size, which means a variable using this
+dimension can grow to any length (like a record number in a file).
+.LP
+A \fIvariable\fP represents a multidimensional array of values of the
+same type. A variable has a name, a data type, and a shape described
+by its list of dimensions. Each variable may also have associated
+\fIattributes\fP (see below) as well as data values. The name, data
+type, and shape of a variable are specified by its declaration in the
+\fIvariable\fP section of a CDL description. A variable may have the same
+name as a dimension; by convention such a variable is one-dimensional
+and contains coordinates of the dimension it names. Dimensions need
+not have corresponding variables.
+.LP
+A netCDF \fIattribute\fP contains information about a netCDF variable or
+about the whole netCDF dataset. Attributes are used
+to specify such properties as units, special values, maximum and
+minimum valid values, scaling factors, offsets, and parameters. Attribute
+information is represented by single values or arrays of values. For
+example, "units" is an attribute represented by a character array such
+as "celsius". An attribute has an associated variable, a name,
+a data type, a length, and a value. In contrast to variables that are
+intended for data, attributes are intended for metadata (data about
+data).
+.LP
+In CDL, an attribute is designated by a variable and attribute name,
+separated by `:'. It is possible to assign \fIglobal\fP attributes
+not associated with any variable to the netCDF as a whole by using
+`:' before the attribute name. The data type of an attribute in CDL
+is derived from the type of the value assigned to it. The length of
+an attribute is the number of data values assigned to it, or the
+number of characters in the character string assigned to it. Multiple
+values are assigned to non-character attributes by separating the
+values with commas. All values assigned to an attribute must be of
+the same type.
+.LP
+The names for CDL dimensions, variables, and attributes must begin with an
+alphabetic character or `_', and subsequent characters may be alphanumeric
+or `_' or `-'.
+.LP
+The optional \fIdata\fP section of a CDL specification is where
+netCDF variables may be initialized. The syntax of an initialization
+is simple: a variable name, an equals sign, and a
+comma-delimited list of constants (possibly separated by spaces, tabs
+and newlines) terminated with a semicolon. For multi-dimensional
+arrays, the last dimension varies fastest. Thus row-order rather than
+column order is used for matrices. If fewer values are supplied than
+are needed to fill a variable, it is extended with a type-dependent
+`fill value', which can be overridden by supplying a value for a
+distinguished variable attribute named `_FillValue'. The
+types of constants need not match the type declared for a variable;
+coercions are done to convert integers to floating point, for example.
+The constant `_' can be used to designate the fill value for a variable.
+.SS "Primitive Data Types"
+.LP
+.RS
+.nf
+\fBchar\fP characters
+\fBbyte\fP 8-bit data
+\fBshort\fP 16-bit signed integers
+\fBlong\fP 32-bit signed integers
+\fBint\fP (synonymous with \fBlong\fP)
+\fBfloat\fP IEEE single precision floating point (32 bits)
+\fBreal\fP (synonymous with \fBfloat\fP)
+\fBdouble\fP IEEE double precision floating point (64 bits)
+.fi
+.RE
+.LP
+Except for the added data-type \fBbyte\fP and the lack of
+\fBunsigned\fP,
+CDL supports the same primitive data types as C.
+The names for the primitive data types are reserved words in CDL,
+so the names of variables, dimensions, and attributes must not be
+type names. In declarations, type names may be specified
+in either upper or lower case.
+.LP
+Bytes differ from characters in that they are intended to hold a full eight
+bits of data, and the zero byte has no special significance, as it
+does for character data.
+\fBncgen3\fP converts \fBbyte\fP declarations to \fBchar\fP
+declarations in the output C code and to the nonstandard \fBBYTE\fP
+declaration in output Fortran code.
+.LP
+Shorts can hold values between \-32768 and 32767.
+\fBncgen3\fP converts \fBshort\fP declarations to \fBshort\fP
+declarations in the output C code and to the nonstandard \fBINTEGER*2\fP
+declaration in output Fortran code.
+.LP
+Longs can hold values between \-2147483648 and 2147483647.
+\fBncgen3\fP converts \fBlong\fP declarations to \fBlong\fP
+declarations in the output C code and to \fBINTEGER\fP
+declarations in output Fortran code. \fBint\fP and \fBinteger\fP are
+accepted as synonyms for \fBlong\fP in CDL declarations.
+Now that there are platforms with 64-bit representations for C longs, it may
+be better to use the \fBint\fP synonym to avoid confusion.
+.LP
+Floats can hold values between about \-3.4+38 and 3.4+38. Their
+external representation is as 32-bit IEEE normalized single-precision
+floating point numbers. \fBncgen3\fP converts \fBfloat\fP
+declarations to \fBfloat\fP declarations in the output C code and to
+\fBREAL\fP declarations in output Fortran code. \fBreal\fP is accepted
+as a synonym for \fBfloat\fP in CDL declarations.
+.LP
+Doubles can hold values between about \-1.7+308 and 1.7+308. Their
+external representation is as 64-bit IEEE standard normalized
+double-precision floating point numbers. \fBncgen3\fP converts
+\fBdouble\fP declarations to \fBdouble\fP declarations in the output C
+code and to \fBDOUBLE PRECISION\fP declarations in output Fortran
+code.
+.LP
+.SS "CDL Constants"
+.LP
+Constants assigned to attributes or variables may be of any of the
+basic netCDF types. The syntax for constants is similar to C syntax,
+except that type suffixes must be appended to shorts and floats to
+distinguish them from longs and doubles.
+.LP
+A \fIbyte\fP constant is represented by a single character or multiple
+character escape sequence enclosed in single quotes. For example,
+.RS
+.nf
+ 'a' // ASCII `a'
+ '\\0' // a zero byte
+ '\\n' // ASCII newline character
+ '\\33' // ASCII escape character (33 octal)
+ '\\x2b' // ASCII plus (2b hex)
+ '\\377' // 377 octal = 255 decimal, non-ASCII
+.fi
+.RE
+.LP
+Character constants are enclosed in double quotes. A character array
+may be represented as a string enclosed in double quotes. The usual C
+string escape conventions are honored. For example
+.RS
+.nf
+"a" // ASCII `a'
+"Two\\nlines\\n" // a 10-character string with two embedded newlines
+"a bell:\\007" // a string containing an ASCII bell
+.fi
+.RE
+Note that the netCDF character array "a" would fit in a one-element
+variable, since no terminating NULL character is assumed. However, a zero
+byte in a character array is interpreted as the end of the significant
+characters by the \fBncdump\fP program, following the C convention.
+Therefore, a NULL byte should not be embedded in a character string unless
+at the end: use the \fIbyte\fP data type instead for byte arrays that
+contain the zero byte. NetCDF and CDL have no string type, but only
+fixed-length character arrays, which may be multi-dimensional.
+.LP
+\fIshort\fP integer constants are intended for representing 16-bit
+signed quantities. The form of a \fIshort\fP constant is an integer
+constant with an `s' or `S' appended. If a \fIshort\fP constant
+begins with `0', it is interpreted as octal, except that if it begins with
+`0x', it is interpreted as a hexadecimal constant. For example:
+.RS
+.nf
+\-2s // a short \-2
+0123s // octal
+0x7ffs //hexadecimal
+.fi
+.RE
+.LP
+\fILong\fP integer constants are intended for representing 32-bit signed
+quantities. The form of a \fIlong\fP constant is an ordinary integer
+constant, although it is acceptable to append an optional `l' or
+`L'. If a \fIlong\fP constant begins with `0', it is interpreted as
+octal, except that if it begins with `0x', it is interpreted as a hexadecimal
+constant. Examples of valid \fIlong\fP constants include:
+.RS
+.nf
+\-2
+1234567890L
+0123 // octal
+0x7ff // hexadecimal
+.fi
+.RE
+.LP
+Floating point constants of type \fIfloat\fP are appropriate for representing
+floating point data with about seven significant digits of precision.
+The form of a \fIfloat\fP constant is the same as a C floating point
+constant with an `f' or `F' appended. For example the following
+are all acceptable \fIfloat\fP constants:
+.RS
+.nf
+\-2.0f
+3.14159265358979f // will be truncated to less precision
+1.f
+
+.fi
+.RE
+.LP
+Floating point constants of type \fIdouble\fP are appropriate for
+representing floating point data with about sixteen significant digits
+of precision. The form of a \fIdouble\fP constant is the same as a C
+floating point constant. An optional `d' or `D' may be appended.
+For example the following are all acceptable \fIdouble\fP constants:
+.RS
+.nf
+\-2.0
+3.141592653589793
+1.0e-20
+1.d
+.fi
+.RE
+
+.SH BUGS
+.LP
+The programs generated by \fBncgen3\fP when using the \fB-c\fP or \fB-f\fP
+use initialization statements to store data in variables, and will fail to
+produce compilable programs if you try to use them for large datasets, since
+the resulting statements may exceed the line length or number of
+continuation statements permitted by the compiler.
+.LP
+The CDL syntax makes it easy to assign what looks like an array of
+variable-length strings to a netCDF variable, but the strings will simply be
+concatenated into a single array of characters, since netCDF cannot
+represent an array of variable-length strings in one netCDF variable.
+.LP
+NetCDF and CDL do not yet support a type corresponding to a 64-bit integer.
diff --git a/privatemodules/nc4/share/man/man3/netcdf.3 b/privatemodules/nc4/share/man/man3/netcdf.3
new file mode 100644
index 0000000000000000000000000000000000000000..89985eda96174003e6ea1db7a1851292bad06a67
--- /dev/null
+++ b/privatemodules/nc4/share/man/man3/netcdf.3
@@ -0,0 +1,1405 @@
+.nr yr \n(yr+1900
+.af mo 01
+.af dy 01
+.TH NETCDF 3 "1997-04-18" "Printed: \n(yr-\n(mo-\n(dy" "UNIDATA LIBRARY FUNCTIONS"
+.SH NAME
+netcdf \- Unidata's Network Common Data Form (netCDF) library interface
+.SH SYNOPSIS
+.ft B
+.na
+.nh
+#include "netcdf.h"
+.sp
+
+cc ... \-lnetcdf \-lhdf5_hl \-lhdf5 \-lz \-lm
+
+.ad
+.hy
+Complete documentation for the netCDF libraries can be found at the netCDF website: http://www.unidata.ucar.edu/software/netcdf/.
+.sp
+.SH "LIBRARY VERSION"
+.LP
+This document describes versions 3 and 4
+of Unidata netCDF data-access interface
+for the C programming language.
+.HP
+\fBconst char* nc_inq_libvers()\fR
+.sp
+Returns a string identifying the version of the netCDF library, and
+when it was built, like: "3.1a of Aug 22 1996 12:57:47 $".
+.LP
+The RCS \fBident(1)\fP command will find a string like
+"$\|Id: @\|(#) netcdf library version 3.1a of Sep 6 1996 15:56:26 $"
+in the library. The SCCS \fBwhat(1)\fP command will find a string like
+"netcdf library version 3.1a of Aug 23 1996 16:07:40 $".
+.SH "RETURN VALUES"
+.LP
+All netCDF functions (except
+\fBnc_inq_libvers(\|)\fR and \fBnc_strerror(\|)\fR) return an integer status.
+
+If this returned status value is not equal to
+\fBNC_NOERR\fR (zero), it
+indicates that an error occurred. The possible status values are defined in
+system include file <errno.h> and in "netcdf.h".
+.HP
+\fBconst char* nc_strerror(int \fIstatus\fP)\fR
+.sp
+Returns a string textual translation of the \fIstatus\fP
+value, like "Attribute or variable name contains illegal characters"
+or "No such file or directory".
+.sp
+.SH "FILE OPERATIONS"
+.LP
+.HP
+\fBint nc_create(const char \fIpath\fP[], int \fIcmode\fP, int* \fIncid\fP)\fR
+.sp
+Creates a new netCDF dataset at \fIpath\fP,
+returning a netCDF ID in \fIncid\fP.
+The argument \fIcmode\fP may include the bitwise-or
+of the following flags:
+\fBNC_NOCLOBBER\fR
+to protect existing datasets (default
+silently blows them away),
+\fBNC_SHARE\fR
+for synchronous dataset updates for classic format files
+(default is to buffer accesses),
+.sp
+When a netCDF dataset is created, is is opened
+\fBNC_WRITE\fR.
+The new netCDF dataset is in define mode.
+\fBNC_64BIT_OFFSET\fR.
+to create a file in the 64-bit offset format
+(as opposed to classic format, the default).
+\fBNC_TRUE\fR to create a netCDF-4/HDF5 file,
+and \fBNC_CLASSIC_MODEL\fR to guarantee that netCDF-4/HDF5 files maintain compatibility
+with the netCDF classic data model.
+.HP
+\fBint nc__create(const char \fIpath\fP[], int \fIcmode\fP, size_t \fIinitialsize\fP, size_t* \fIchunksize\fP, int* \fIncid\fP)\fR
+.sp
+Like \fBnc_create(\|)\fR but has additional performance tuning parameters.
+.sp
+The argument \fIinitialsize\fP sets the initial size of the file at
+creation time.
+.sp
+See \fBnc__open(\|)\fR below for an explanation of the \fIchunksize\fP
+parameter.
+.HP
+\fBint nc_open(const char \fIpath\fP[], int \fImode\fP, int* \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncopen(\|)\fR in version 2)
+.sp
+Opens a existing netCDF dataset at \fIpath\fP
+returning a netCDF ID
+in \fIncid\fP.
+The type of access is described by the \fImode\fP parameter,
+which may include the bitwise-or
+of the following flags:
+\fBNC_WRITE\fR
+for read-write access (default
+read-only),
+\fBNC_SHARE\fR
+for synchronous dataset updates (default is
+to buffer accesses), and
+\fBNC_LOCK\fR
+(not yet implemented).
+.sp
+As of NetCDF version 4.1, and if TRUE support was enabled
+when the NetCDF library was built, the path parameter
+may specify a TRUE URL. In this case, the access mode is
+forced to be read-only.
+.HP
+\fBint nc__open(const char \fIpath\fP[], int \fImode\fP, size_t* \fIchunksize\fP, int* \fIncid\fP)\fR
+.sp
+Like \fBnc_open(\|)\fR but has an additional performance tuning parameter.
+.sp
+The argument referenced by \fIchunksize\fP controls a space versus time
+tradeoff, memory allocated in the netcdf library versus number of system
+calls.
+Because of internal requirements, the value may not be set to exactly
+the value requested.
+The actual value chosen is returned by reference.
+Using the value \fBNC_SIZEHINT_DEFAULT\fR causes the library to choose a
+default.
+How the system choses the default depends on the system.
+On many systems, the "preferred I/O block size" is available from the
+\fBstat()\fR system call, \fBstruct stat\fR member \fBst_blksize\fR.
+If this is available it is used. Lacking that, twice the system pagesize
+is used.
+Lacking a call to discover the system pagesize, we just set default
+chunksize to 8192.
+.sp
+The chunksize is a property of a given open netcdf descriptor
+\fIncid\fP, it is not a persistent property of the netcdf dataset.
+.sp
+As with \fBnc__open(\|)\fR, the path parameter
+may specify a TRUE URL, but the tuning parameters are ignored.
+.HP
+\fBint nc_redef(int \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncredef(\|)\fR in version 2)
+.sp
+Puts an open netCDF dataset into define mode,
+so dimensions, variables, and attributes can be added or renamed and
+attributes can be deleted.
+.HP
+\fBint nc_enddef(int \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncendef(\|)\fR in version 2)
+.sp
+Takes an open netCDF dataset out of define mode.
+The changes made to the netCDF dataset
+while it was in define mode are checked and committed to disk if no
+problems occurred. Some data values may be written as well,
+see "VARIABLE PREFILLING" below.
+After a successful call, variable data can be read or written to the dataset.
+.HP
+\fBint nc__enddef(int \fIncid\fP, size_t \fIh_minfree\fP, size_t \fIv_align\fP, size_t \fIv_minfree\fP, size_t \fIr_align\fP)\fR
+.sp
+Like \fBnc_enddef(\|)\fR but has additional performance tuning parameters.
+.sp
+Caution: this function exposes internals of the netcdf version 1 file
+format.
+It may not be available on future netcdf implementations.
+.sp
+The current netcdf file format has three sections,
+the "header" section, the data section for fixed size variables, and
+the data section for variables which have an unlimited dimension (record
+variables).
+The header begins at the beginning of the file. The index
+(offset) of the beginning of the other two sections is contained in the
+header. Typically, there is no space between the sections. This causes
+copying overhead to accrue if one wishes to change the size of the
+sections,
+as may happen when changing names of things, text attribute values,
+adding
+attributes or adding variables. Also, for buffered i/o, there may be
+advantages
+to aligning sections in certain ways.
+.sp
+The minfree parameters allow one to control costs of future calls
+to \fBnc_redef(\|)\fR, \fBnc_enddef(\|)\fR by requesting that \fIminfree\fP bytes be
+available at the end of the section.
+The \fIh_minfree\fP parameter sets the pad
+at the end of the "header" section. The \fIv_minfree\fP parameter sets
+the pad at the end of the data section for fixed size variables.
+.sp
+The align parameters allow one to set the alignment of the beginning of
+the corresponding sections. The beginning of the section is rounded up
+to an index which is a multiple of the align parameter. The flag value
+\fBNC_ALIGN_CHUNK\fR tells the library to use the chunksize (see above)
+as the align parameter.
+The \fIv_align\fP parameter controls the alignment of the beginning of
+the data section for fixed size variables.
+The \fIr_align\fP parameter controls the alignment of the beginning of
+the data section for variables which have an unlimited dimension (record
+variables).
+.sp
+The file format requires mod 4 alignment, so the align parameters
+are silently rounded up to multiples of 4. The usual call,
+\fBnc_enddef(\fIncid\fP)\fR
+is equivalent to
+\fBnc__enddef(\fIncid\fP, 0, 4, 0, 4)\fR.
+.sp
+The file format does not contain a "record size" value, this is
+calculated from the sizes of the record variables. This unfortunate fact
+prevents us from providing minfree and alignment control of the
+"records"
+in a netcdf file. If you add a variable which has an unlimited
+dimension,
+the third section will always be copied with the new variable added.
+.HP
+\fBint nc_sync(int \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncsync(\|)\fR in version 2)
+.sp
+Unless the
+\fBNC_SHARE\fR
+bit is set in
+\fBnc_open(\|)\fR or \fBnc_create(\|)\fR,
+accesses to the underlying netCDF dataset are
+buffered by the library. This function synchronizes the state of
+the underlying dataset and the library.
+This is done automatically by
+\fBnc_close(\|)\fR and \fBnc_enddef(\|)\fR.
+.HP
+\fBint nc_abort(int \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncabort(\|)\fR in version 2)
+.sp
+You don't need to call this function.
+This function is called automatically by
+\fBnc_close(\|)\fR
+if the netCDF was in define mode and something goes wrong with the commit.
+If the netCDF dataset isn't in define mode, then this function is equivalent to
+\fBnc_close(\|)\fR.
+If it is called after
+\fBnc_redef(\|)\fR,
+but before
+\fBnc_enddef(\|)\fR,
+the new definitions are not committed and the dataset is closed.
+If it is called after
+\fBnc_create(\|)\fR
+but before
+\fBnc_enddef(\|)\fR,
+the dataset disappears.
+.HP
+\fBint nc_close(int \fIncid\fP)\fR
+.sp
+(Corresponds to
+\fBncclose(\|)\fR in version 2)
+.sp
+Closes an open netCDF dataset.
+If the dataset is in define mode,
+\fBnc_enddef(\|)\fR
+will be called before closing.
+After a dataset is closed, its ID may be reassigned to another dataset.
+.HP
+\fBint nc_inq(int \fIncid\fP, int* \fIndims\fP, int* \fInvars\fP,
+int* \fInatts\fP, int* \fIunlimdimid\fP)\fR
+.HP
+\fBint nc_inq_ndims(int \fIncid\fP, int* \fIndims\fP)\fR
+.HP
+\fBint nc_inq_nvars(int \fIncid\fP, int* \fInvars\fP)\fR
+.HP
+\fBint nc_inq_natts(int \fIncid\fP, int* \fInatts\fP)\fR
+.HP
+\fBint nc_inq_unlimdim(int \fIncid\fP, int* \fIunlimdimid\fP)\fR
+.HP
+\fBint nc_inq_format(int \fIncid\fP, int* \fIformatn\fP)\fR
+.sp
+Use these functions to find out what is in a netCDF dataset.
+Upon successful return,
+\fIndims\fP will contain the
+number of dimensions defined for this netCDF dataset,
+\fInvars\fP will contain the number of variables,
+\fInatts\fP will contain the number of attributes, and
+\fIunlimdimid\fP will contain the
+dimension ID of the unlimited dimension if one exists, or
+\-1 otherwise.
+\fIformatn\fP will contain the version number of the dataset <format>, one of
+\fBNC_FORMAT_CLASSIC\fR, \fBNC_FORMAT_64BIT_OFFSET\fR, \fBNC_FORMAT_NETCDF4\fR, or
+\fBNC_FORMAT_NETCDF4_CLASSIC\fR.
+If any of the
+return parameters is a \fBNULL\fR pointer, then the corresponding information
+will not be returned; hence, no space need be allocated for it.
+.HP
+\fBint nc_def_dim(int \fIncid\fP, const char \fIname\fP[], size_t \fIlen\fP, int* \fIdimid\fP)\fR
+.sp
+(Corresponds to \fBncdimdef(\|)\fR in version 2)
+.sp
+Adds a new dimension to an open netCDF dataset, which must be
+in define mode.
+\fIname\fP is the dimension name.
+If \fIdimid\fP is not a \fBNULL\fR pointer then upon successful completion \fIdimid\fP will contain the dimension ID of the newly created dimension.
+
+.SH "USER DEFINED TYPES"
+.LP
+Users many define types for a netCDF-4/HDF5 file (unless the
+\fBNC_CLASSIC_MODEL\fR was used when the file was creates). Users may
+define compound types, variable length arrays, enumeration types, and
+opaque types.
+.sp
+
+.HP
+\fBint nc_def_compound(int \fIncid\fP, size_t \fIsize\fP, const char \fIname\fP[], int* \fItypeidp\fP)\fR
+.sp
+Define a compound type.
+.HP
+\fBint nc_insert_compound(int \fIncid\fP, nc_type \fI\fP, const char \fIname\fP[], size_t \fIoffset\fP, nc_type \fIfield_typeid\fP)\fR
+.sp
+Insert an element into a compound type. May not be done after type has been used, or after the type has been written by an enddef.
+.HP
+\fBint nc_insert_array_compound(int \fIncid\fP, nc_type \fI\fP, const char \fIname\fP[], size_t \fIoffset\fP, nc_type \fIfield_typeid\fP, int \fIndims\fP, const int \fIdim_sizes\fP[])\fR
+.sp
+Insert an array into a compound type.
+.HP
+\fBint nc_inq_type(int \fIncid\fP, nc_type \fI\fP, char \fIname\fP[], size_t* \fIsizep\fP)\fR
+.sp
+Learn about a type.
+.HP
+\fBint nc_inq_compound(int \fIncid\fP, nc_type \fI\fP, char \fIname\fP[], size_t* \fIsizep\fP, size_t* \fInfieldsp\fP)\fR
+.HP
+\fBint nc_inq_compound_name(int \fIncid\fP, nc_type \fI\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_compound_size(int \fIncid\fP, nc_type \fI\fP, size_t* \fIsizep\fP)\fR
+.HP
+\fBint nc_inq_compound_nfields(int \fIncid\fP, nc_type \fI\fP, size_t* \fInfieldsp\fP)\fR
+.HP
+\fBint nc_inq_compound_fieldname(int \fIncid\fP, nc_type \fI\fP, int \fIfieldid\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_compound_fieldindex(int \fIncid\fP, nc_type \fI\fP, const char \fIname\fP[], int* \fIfieldidp\fP)\fR
+.HP
+\fBint nc_inq_compound_fieldoffset(int \fIncid\fP, nc_type \fI\fP, int \fIfieldid\fP, size_t* \fIoffsetp\fP)\fR
+.HP
+\fBint nc_inq_compound_fieldtype(int \fIncid\fP, nc_type \fI\fP, int \fIfieldid\fP, nc_type* \fIfield_typeid\fP)\fR
+.HP
+\fBint nc_inq_compound_fieldndims(int \fIncid\fP, nc_type \fI\fP, int \fIfieldid\fP, int* \fIndims\fP)\fR
+.HP
+\fBint nc_inq_compound_fielddim_sizes(int \fIncid\fP, nc_type \fI\fP, int \fIfieldid\fP, int \fIdim_sizes\fP[])\fR
+.sp
+Learn about a compound type.
+.HP
+\fBint nc_def_vlen(int \fIncid\fP, const char \fIname\fP[], nc_type \fIbase_typeid\fP, nc_type* \fIxtypep\fP)\fR
+.sp
+Create a variable length array type.
+.HP
+\fBint nc_inq_vlen(int \fIncid\fP, nc_type \fI\fP, char \fIname\fP[], size_t* \fIdatum_sizep\fP, nc_type* \fIbase_nc_typep\fP)\fR
+.sp
+Learn about a variable length array type.
+.HP
+\fBint nc_free_vlen(nc_vlen_t *vl)\fR
+.sp
+Free memory comsumed by reading data of a variable length array type.
+.HP
+\fBint nc_put_vlen_element(int \fIncid\fP, nc_type \fI\fP, void * \fIvlen_element\fP, size_t \fIlen\fP, void * \fIdata\fP)\fR
+.sp
+Write one VLEN.
+.HP
+\fBint nc_get_vlen_element(int \fIncid\fP, nc_type \fI\fP, void ** \fIvlen_element\fP, size_t \fIlen\fP, void ** \fIdata\fP)\fR
+.sp
+Read one VLEN.
+.HP
+\fBint nc_free_string(size_t \fIlen\fP, char **data)\fR
+.sp
+Free memory comsumed by reading data of a string type.
+.HP
+\fBint nc_inq_user_type(int \fIncid\fP, nc_type \fI\fP, char \fIname\fP[], size_t* \fI\fP, nc_type* \fI\fP, size_t* \fI\fP, int* \fI\fP)\fR
+.sp
+Learn about a user define type.
+.HP
+\fBint nc_def_enum(int \fIncid\fP, nc_type \fIbase_typeid\fP, const char \fIname\fP[], nc_type* \fItypeidp\fP)\fR
+.sp
+Define an enumeration type.
+.HP
+\fBint nc_insert_enum(int \fIncid\fP, nc_type \fIbase_typeid\fP, const char \fIname\fP[], const void *value)\fR
+.sp
+Insert a name-value pair into enumeration type.
+.HP
+\fBint nc_inq_enum_member(int \fIncid\fP, nc_type \fIxtype\fP, int \fIidx\fP, char \fIname\fP[], void *value)\fR
+.HP
+\fBint nc_inq_enum_ident(int \fIncid\fP, nc_type \fIxtype\fP, int \fIidx\fP, long long \fIvalue\fP, char \fIidentifier\fP[])\fR
+.sp
+Learn about a name-value pair into enumeration type.
+.HP
+\fBint nc_def_opaque(int \fIncid\fP, size_t \fIsize\fP, const char \fIname\fP[], nc_type* \fIxtypep\fP)\fR
+.sp
+Create an opaque type.
+.HP
+\fBint nc_inq_opaque(int \fIncid\fP, nc_type \fIxtype\fP, char \fIname\fP[], size_t* \fIsizep\fP)\fR
+.sp
+Learn about opaque type.
+.HP
+.SH "GROUPS"
+.sp
+Users may organize data into hierarchical groups in netCDF-4/HDF5 files (unless \fBNC_CLASSIC_MODEL\fR was used when creating the file).
+.HP
+\fBint nc_inq_grps(int \fIncid\fP, int* \fInumgrps\fP, int \fIncids\fP[])\fR
+.sp
+Learn how many groups (and their ncids) are available from the group represented by ncid.
+.HP
+\fBint nc_inq_grpname(int \fIncid\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_grpname_full(int \fIncid\fP, size_t* \fIlen\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_grpname_len(int \fIncid\fP, size_t* \fIlen\fP)\fR
+.HP
+\fBint nc_inq_grp_parent(int \fIncid\fP, int* \fIncid\fP)\fR
+.HP
+\fBint nc_inq_grp_ncid(int \fIncid\fP, char \fIname\fP[], int* \fIncid\fP)\fR
+.HP
+\fBint nc_inq_full_ncid(int \fIncid\fP, char \fIname\fP[], int* \fIncid\fP)\fR
+.sp
+Learn about a group.
+.HP
+\fBint nc_inq_varids(int \fIncid\fP, int* \fInvars\fP, int* \fI\fP)\fR
+.sp
+Get the varids in a group.
+.HP
+\fBint nc_inq_dimids(int \fIncid\fP, int* \fIndims\fP, int* \fIdimids\fP, int \fIinclude_parents\fP)\fR
+.sp
+Get the dimids in a group and (potentially) its parents.
+.HP
+\fBint nc_inq_typeids(int \fIncid\fP, int* \fIntypes\fP, int \fItypeids\fP[])\fR
+.sp
+Get the typeids of user-defined types in a group.
+.HP
+\fBint nc_def_grp(int \fIncid\fP, char \fIname\fP[], int* \fIncid\fP)\fR
+.sp
+Create a group.
+.LP
+
+.SH "DIMENSIONS"
+.LP
+.HP
+\fBint nc_inq_dimid(int \fIncid\fP, const char \fIname\fP[], int* \fIdimid\fP)\fR
+.sp
+(Corresponds to \fBncdimid(\|)\fR in version 2)
+.sp
+Given a dimension name, returns the ID of a netCDF dimension in \fIdimid\fP.
+.HP
+\fBint nc_inq_dim(int \fIncid\fP, int \fIdimid\fP, char \fIname\fP[], size_t* \fIlen\fP)\fR
+.HP
+\fBint nc_inq_dimname(int \fIncid\fP, int \fIdimid\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_dimlen(int \fIncid\fP, int \fIdimid\fP, size_t* \fIlen\fP)\fR
+.sp
+Use these functions to find out about a dimension.
+If either the \fIname\fP
+argument or \fIlen\fP argument is a \fBNULL\fR pointer, then
+the associated information will not be returned. Otherwise,
+\fIname\fP should be big enough (\fBNC_MAX_NAME\fR)
+to hold the dimension name as the name will be copied into your storage.
+The length return parameter, \fIlen\fP
+will contain the size of the dimension.
+For the unlimited dimension, the returned length is the current
+maximum value used for writing into any of the variables which use
+the dimension.
+.HP
+\fBint nc_rename_dim(int \fIncid\fP, int \fIdimid\fP, const char \fIname\fP[])\fR
+.sp
+(Corresponds to \fBncdimrename(\|)\fR in version 2)
+.sp
+Renames an existing dimension in an open netCDF dataset.
+If the new name is longer than the old name, the netCDF dataset must be in
+define mode.
+You cannot rename a dimension to have the same name as another dimension.
+.SH "VARIABLES"
+.LP
+.HP
+\fBint nc_def_var(int \fIncid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, int \fIndims\fP, const int \fIdimids\fP[], int* \fIvarid\fP)\fR
+.sp
+(Corresponds to \fBncvardef(\|)\fR in version 2)
+.sp
+Adds a new variable to a netCDF dataset. The netCDF must be in define mode.
+If not \fBNULL\fR, then \fIvarid\fP will be set to the netCDF variable ID.
+.HP
+\fBint nc_inq_varid(int \fIncid\fP, const char \fIname\fP[], int* \fIvarid\fP)\fR
+.sp
+(Corresponds to \fBncvarid(\|)\fR in version 2)
+.sp
+Returns the ID of a netCDF variable in \fIvarid\fP given its name.
+.HP
+\fBint nc_inq_var(int \fIncid\fP, int \fIvarid\fP, char \fIname\fP[], nc_type* \fIxtype\fP, int* \fIndims\fP, int \fIdimids\fP[],
+int* \fInatts\fP)\fR
+.HP
+\fBint nc_inq_varname(int \fIncid\fP, int \fIvarid\fP, char \fIname\fP[])\fR
+.HP
+\fBint nc_inq_vartype(int \fIncid\fP, int \fIvarid\fP, nc_type* \fIxtype\fP)\fR
+.HP
+\fBint nc_inq_varndims(int \fIncid\fP, int \fIvarid\fP, int* \fIndims\fP)\fR
+.HP
+\fBint nc_inq_vardimid(int \fIncid\fP, int \fIvarid\fP, int \fIdimids\fP[])\fR
+.HP
+\fBint nc_inq_varnatts(int \fIncid\fP, int \fIvarid\fP, int* \fInatts\fP)\fR
+.sp
+Returns information about a netCDF variable, given its ID.
+If any of the
+return parameters (\fIname\fP, \fIxtype\fP, \fIndims\fP, \fIdimids\fP, or
+\fInatts\fP) is a \fBNULL\fR pointer, then the corresponding information
+will not be returned; hence, no space need be allocated for it.
+.HP
+\fBint nc_rename_var(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[])\fR
+.sp
+(Corresponds to \fBncvarrename(\|)\fR in version 2)
+.sp
+Changes the name of a netCDF variable.
+If the new name is longer than the old name, the netCDF must be in define mode.
+You cannot rename a variable to have the name of any existing variable.
+
+.SH "VARIABLES \fIin\fP NETCDF-4 FILES"
+.LP
+The following functions may only be used on variables in a
+netCDF-4/HDF5 data file. These functions must be called after the
+variable is defined, but before an enddef call.
+.sp
+\fBint nc_def_var_deflate(int \fIncid\fP, int \fIvarid\fP, int \fIshuffle\fP, int \fIdeflate\fP, int \fIdeflate_level\fP)\fR
+.sp
+Turn on compression and/or shuffle filter. (Shuffle filter is only useful for integer data.)
+.HP
+\fBint nc_inq_var_deflate(int \fIncid\fP, int \fIvarid\fP, int* \fIshufflep\fP, int* \fIdeflatep\fP, int* \fIdeflate_levelp\fP)\fR
+.sp
+Learn about a variable's deflate settings.
+.HP
+\fBint nc_def_var_fletcher32(int \fIncid\fP, int \fIvarid\fP, int \fIfletcher32\fP)\fR
+.sp
+Turn on checksumming for a variable.
+.HP
+\fBint nc_inq_var_fletcher32(int \fIncid\fP, int \fIvarid\fP, int* \fIfletcher32\fP)\fR
+.sp
+Learn about checksumming for a variable.
+.HP
+\fBint nc_def_var_chunking(int \fIncid\fP, int \fIvarid\fP, int \fIstorage\fP, const size_t \fIchunksizesp\fP[])\fR
+.sp
+Set chunksizes for a variable.
+.HP
+\fBint nc_inq_var_chunking(int \fIncid\fP, int \fIvarid\fP, int* \fIstoragep\fP, size_t \fIchunksizesp\fP[])\fR
+.sp
+Learn about chunksizes for a variable.
+.HP
+\fBint nc_def_var_fill(int \fIncid\fP, int \fIvarid\fP, int \fIno_fill\fP, const size_t \fIchunksizesp\fP[])\fR
+.sp
+Set a fill value for a variable.
+.HP
+\fBint nc_inq_var_fill(int \fIncid\fP, int \fIvarid\fP, int* \fIstoragep\fP, size_t \fIchunksizesp\fP[])\fR
+.sp
+Learn the fill value for a variable.
+.HP
+\fBint nc_def_var_endian(int \fIncid\fP, int \fIvarid\fP, int \fIendian\fP)\fR
+.sp
+Set endianness of variable.
+.HP
+\fBint nc_inq_var_endian(int \fIncid\fP, int \fIvarid\fP, int* \fIendianp\fP)\fR
+.sp
+Learn the endianness of a variable.
+.HP
+
+.SH "WRITING AND READING WHOLE VARIABLES"
+.LP
+.HP
+\fBint nc_put_var_text(int \fIncid\fP, int \fIvarid\fP, const char \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_uchar(int \fIncid\fP, int \fIvarid\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_schar(int \fIncid\fP, int \fIvarid\fP, const signed char \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_short(int \fIncid\fP, int \fIvarid\fP, const short \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_int(int \fIncid\fP, int \fIvarid\fP, const int \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_long(int \fIncid\fP, int \fIvarid\fP, const long \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_float(int \fIncid\fP, int \fIvarid\fP, const float \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_double(int \fIncid\fP, int \fIvarid\fP, const double \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_ubyte(int \fIncid\fP, int \fIvarid\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_ushort(int \fIncid\fP, int \fIvarid\fP, const unsigned short \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_uint(int \fIncid\fP, int \fIvarid\fP, const unsigned int \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_int64(int \fIncid\fP, int \fIvarid\fP, const long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_uint64(int \fIncid\fP, int \fIvarid\fP, const unsigned long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_var_string(int \fIncid\fP, int \fIvarid\fP, const char * \fIout\fP[])\fR
+
+
+.sp
+Writes an entire netCDF variable (i.e. all the values). The netCDF
+dataset must be open and in data mode. The type of the data is
+specified in the function name, and it is converted to the external
+type of the specified variable, if possible, otherwise an
+\fBNC_ERANGE\fR error is returned. Note that rounding is not performed
+during the conversion. Floating point numbers are truncated when
+converted to integers.
+.HP
+\fBint nc_get_var_text(int \fIncid\fP, int \fIvarid\fP, char \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_uchar(int \fIncid\fP, int \fIvarid\fP, unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_schar(int \fIncid\fP, int \fIvarid\fP, signed char \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_short(int \fIncid\fP, int \fIvarid\fP, short \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_int(int \fIncid\fP, int \fIvarid\fP, int \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_long(int \fIncid\fP, int \fIvarid\fP, long \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_float(int \fIncid\fP, int \fIvarid\fP, float \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_double(int \fIncid\fP, int \fIvarid\fP, double \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_ubyte(int \fIncid\fP, int \fIvarid\fP, unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_ushort(int \fIncid\fP, int \fIvarid\fP, unsigned short \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_uint(int \fIncid\fP, int \fIvarid\fP, unsigned int \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_int64(int \fIncid\fP, int \fIvarid\fP, long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_uint64(int \fIncid\fP, int \fIvarid\fP, unsigned long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_var_string(int \fIncid\fP, int \fIvarid\fP, char * \fIin\fP[])\fR
+
+
+.sp
+Reads an entire netCDF variable (i.e. all the values).
+The netCDF dataset must be open and in data mode.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNC_ERANGE\fR error is returned.
+.SH "WRITING AND READING ONE DATUM"
+.LP
+.HP
+\fBint nc_put_var1_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], char \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned char \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], signed char \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], short \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], int \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], long \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], float \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], double \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned char \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned short \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned int \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], long long \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned long long \fI*out\fP)\fR
+.HP
+\fBint nc_put_var1_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], char * \fI*out\fP)\fR
+
+
+.sp
+Puts a single data value into a variable at the position \fIindex\fP of an
+open netCDF dataset that is in data mode. The type of the data is
+specified in the function name, and it is converted to the external type
+of the specified variable, if possible, otherwise an \fBNC_ERANGE\fR
+error is returned.
+.HP
+\fBint nc_get_var1_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], char* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned char* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], signed char* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], short* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], int* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], long* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], float* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], double* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned char* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned short* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned int* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], long long* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], unsigned long long* \fIin\fP)\fR
+.HP
+\fBint nc_get_var1_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIindex\fP[], char ** \fIin\fP)\fR
+
+
+.sp
+Gets a single data value from a variable at the position \fIindex\fP
+of an open netCDF dataset that is in data mode.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNC_ERANGE\fR error is returned.
+.SH "WRITING AND READING AN ARRAY"
+.LP
+.HP
+\fBint nc_put_vara_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const signed char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const short \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const int \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const float \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const double \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const unsigned short \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const unsigned int \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const unsigned long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vara_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const char * \fIout\fP[])\fR
+
+
+.sp
+Writes an array section of values into a netCDF variable of an open
+netCDF dataset, which must be in data mode. The array section is specified
+by the \fIstart\fP and \fIcount\fP vectors, which give the starting index
+and count of values along each dimension of the specified variable.
+The type of the data is
+specified in the function name and is converted to the external type
+of the specified variable, if possible, otherwise an \fBNC_ERANGE\fR
+error is returned.
+.HP
+\fBint nc_get_vara_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], signed char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], short \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], int \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], float \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], double \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], unsigned short \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], unsigned int \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], unsigned long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vara_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], char * \fIin\fP[])\fR
+
+
+.sp
+Reads an array section of values from a netCDF variable of an open
+netCDF dataset, which must be in data mode. The array section is specified
+by the \fIstart\fP and \fIcount\fP vectors, which give the starting index
+and count of values along each dimension of the specified variable.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNC_ERANGE\fR error is returned.
+.SH "WRITING AND READING A SLICED ARRAY"
+.LP
+.HP
+\fBint nc_put_vars_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const signed char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const short \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const int \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const float \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const double \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const unsigned short \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const unsigned int \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const unsigned long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_vars_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], const char * \fIout\fP[])\fR
+
+
+.sp
+These functions are used for \fIstrided output\fP, which is like the
+array section output described above, except that
+the sampling stride (the interval between accessed values) is
+specified for each dimension.
+For an explanation of the sampling stride
+vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.HP
+\fBint nc_get_vars_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], signed char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], short \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], int \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], float \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], double \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], unsigned short \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], unsigned int \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], unsigned long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_vars_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], char * \fIin\fP[])\fR
+
+
+.sp
+These functions are used for \fIstrided input\fP, which is like the
+array section input described above, except that
+the sampling stride (the interval between accessed values) is
+specified for each dimension.
+For an explanation of the sampling stride
+vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.SH "WRITING AND READING A MAPPED ARRAY"
+.LP
+.HP
+\fBint nc_put_varm_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const char \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const signed char \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const short \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const int \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const long \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const float \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const double \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const unsigned short \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const unsigned int \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const unsigned long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_varm_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, const char * \fIout\fP[])\fR
+
+
+.sp
+These functions are used for \fImapped output\fP, which is like
+strided output described above, except that an additional index mapping
+vector is provided to specify the in-memory arrangement of the data
+values.
+For an explanation of the index
+mapping vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.HP
+\fBint nc_get_varm_text(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, char \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_uchar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_schar(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, signed char \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_short(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, short \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_int(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, int \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_long(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, long \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_float(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, float \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_double(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, double \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_ubyte(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_ushort(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, unsigned short \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_uint(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, unsigned int \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_int64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_uint64(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, unsigned long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_varm_string(int \fIncid\fP, int \fIvarid\fP, const size_t \fIstart\fP[], const size_t \fIcount\fP[], const size_t \fIstride\fP[], \fIimap\fP, char * \fIin\fP[])\fR
+
+
+.sp
+These functions are used for \fImapped input\fP, which is like
+strided input described above, except that an additional index mapping
+vector is provided to specify the in-memory arrangement of the data
+values.
+For an explanation of the index
+mapping vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.SH "ATTRIBUTES"
+.LP
+.HP
+\fBint nc_put_att_text(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const char \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_uchar(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_schar(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const signed char \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_short(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const short \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_int(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const int \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_long(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const long \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_float(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const float \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_double(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const double \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_ubyte(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const unsigned char \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_ushort(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const unsigned short \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_uint(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const unsigned int \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_int64(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_uint64(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const unsigned long long \fIout\fP[])\fR
+.HP
+\fBint nc_put_att_string(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, const char * \fIout\fP[])\fR
+
+
+.HP
+\fBint nc_put_att(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type \fIxtype\fP, size_t \fIlen\fP, void * \fIip\fP)\fR
+.HP
+\fBint nc_get_att(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], void ** \fIip\fP)\fR
+.sp
+Unlike variables, attributes do not have
+separate functions for defining and writing values.
+This family of functions defines a new attribute with a value or changes
+the value of an existing attribute.
+If the attribute is new, or if the space required to
+store the attribute value is greater than before,
+the netCDF dataset must be in define mode.
+The parameter \fIlen\fP is the number of values from \fIout\fP to transfer.
+It is often one, except that for
+\fBnc_put_att_text(\|)\fR it will usually be
+\fBstrlen(\fIout\fP)\fR.
+.sp
+For these functions, the type component of the function name refers to
+the in-memory type of the value, whereas the \fIxtype\fP argument refers to the
+external type for storing the value. An \fBNC_ERANGE\fR
+error results if
+a conversion between these types is not possible. In this case the value
+is represented with the appropriate fill-value for the associated
+external type.
+.HP
+\fBint nc_inq_attname(int \fIncid\fP, int \fIvarid\fP, int \fIattnum\fP, char \fIname\fP[])\fR
+.sp
+Gets the
+name of an attribute, given its variable ID and attribute number.
+This function is useful in generic applications that
+need to get the names of all the attributes associated with a variable,
+since attributes are accessed by name rather than number in all other
+attribute functions. The number of an attribute is more volatile than
+the name, since it can change when other attributes of the same variable
+are deleted. The attributes for each variable are numbered
+from 0 (the first attribute) to
+\fInvatts\fP-1,
+where \fInvatts\fP is
+the number of attributes for the variable, as returned from a call to
+\fBnc_inq_varnatts(\|)\fR.
+If the \fIname\fP parameter is a \fBNULL\fR pointer, no name will be
+returned and no space need be allocated.
+.HP
+\fBint nc_inq_att(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type* \fIxtype\fP, size_t* \fIlen\fP)\fR
+.HP
+\fBint nc_inq_attid(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], int* \fIattnum\fP)\fR
+.HP
+\fBint nc_inq_atttype(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], nc_type* \fIxtype\fP)\fR
+.HP
+\fBint nc_inq_attlen(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], size_t* \fIlen\fP)\fR
+.sp
+These functions return information about a netCDF attribute,
+given its variable ID and name. The information returned is the
+external type in \fIxtype\fP
+and the number of elements in the attribute as \fIlen\fP.
+If any of the return arguments is a \fBNULL\fR pointer,
+the specified information will not be returned.
+.HP
+\fBint nc_copy_att(int \fIncid\fP, int \fIvarid_in\fP, const char \fIname\fP[], int \fIncid_out\fP, int \fIvarid_out\fP)\fR
+.sp
+Copies an
+attribute from one netCDF dataset to another. It can also be used to
+copy an attribute from one variable to another within the same netCDF.
+\fIncid_in\fP is the netCDF ID of an input netCDF dataset from which the
+attribute will be copied.
+\fIvarid_in\fP
+is the ID of the variable in the input netCDF dataset from which the
+attribute will be copied, or \fBNC_GLOBAL\fR
+for a global attribute.
+\fIname\fP
+is the name of the attribute in the input netCDF dataset to be copied.
+\fIncid_out\fP
+is the netCDF ID of the output netCDF dataset to which the attribute will be
+copied.
+It is permissible for the input and output netCDF ID's to be the same. The
+output netCDF dataset should be in define mode if the attribute to be
+copied does not already exist for the target variable, or if it would
+cause an existing target attribute to grow.
+\fIvarid_out\fP
+is the ID of the variable in the output netCDF dataset to which the attribute will
+be copied, or \fBNC_GLOBAL\fR to copy to a global attribute.
+.HP
+\fBint nc_rename_att(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], const char \fInewname\fP[])\fR
+.sp
+Changes the
+name of an attribute. If the new name is longer than the original name,
+the netCDF must be in define mode. You cannot rename an attribute to
+have the same name as another attribute of the same variable.
+\fIname\fP is the original attribute name.
+\fInewname\fP
+is the new name to be assigned to the specified attribute. If the new name
+is longer than the old name, the netCDF dataset must be in define mode.
+.HP
+\fBint nc_del_att(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[])\fR
+.sp
+Deletes an attribute from a netCDF dataset. The dataset must be in
+define mode.
+.HP
+\fBint nc_get_att_text(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], char \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_uchar(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_schar(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], signed char \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_short(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], short \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_int(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], int \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_long(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], long \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_float(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], float \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_double(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], double \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_ubyte(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], unsigned char \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_ushort(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], unsigned short \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_uint(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], unsigned int \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_int64(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_uint64(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], unsigned long long \fIin\fP[])\fR
+.HP
+\fBint nc_get_att_string(int \fIncid\fP, int \fIvarid\fP, const char \fIname\fP[], char * \fIin\fP[])\fR
+
+
+.sp
+Gets the value(s) of a netCDF attribute, given its
+variable ID and name. Converts from the external type to the type
+specified in
+the function name, if possible, otherwise returns an \fBNC_ERANGE\fR
+error.
+All elements of the vector of attribute
+values are returned, so you must allocate enough space to hold
+them. If you don't know how much space to reserve, call
+\fBnc_inq_attlen(\|)\fR
+first to find out the length of the attribute.
+.SH "COMMON ARGUMENT DESCRIPTIONS"
+.LP
+In this section we define some common arguments which are used in the
+"FUNCTION DESCRIPTIONS" section.
+.TP
+int \fIncid\fP
+is the netCDF ID returned from a previous, successful call to
+\fBnc_open(\|)\fR or \fBnc_create(\|)\fR
+.TP
+char \fIname\fP[]
+is the name of a dimension, variable, or attribute. The names of
+dimensions, variables and attributes consist of arbitrary
+sequences of alphanumeric characters (as well as underscore '_',
+period '.' and hyphen '-'), beginning with a letter or
+underscore. (However names commencing with underscore are reserved for
+system use.) Case is significant in netCDF names. A zero-length name
+is not allowed.
+As an input argument,
+it shall be a pointer to a 0-terminated string; as an output argument, it
+shall be the address of a buffer in which to hold such a string.
+The maximum allowable number of characters
+(excluding the terminating 0) is \fBNC_MAX_NAME\fR.
+.TP
+nc_type \fIxtype\fP
+specifies the external data type of a netCDF variable or attribute and
+is one of the following:
+\fBNC_BYTE\fR, \fBNC_CHAR\fR, \fBNC_SHORT\fR, \fBNC_INT\fR,
+\fBNC_FLOAT\fR, or \fBNC_DOUBLE\fR.
+These are used to specify 8-bit integers,
+characters, 16-bit integers, 32-bit integers, 32-bit IEEE floating point
+numbers, and 64-bit IEEE floating-point numbers, respectively.
+(\fBNC_INT\fR corresponds to \fBNC_LONG\fR in version 2, to specify a
+32-bit integer).
+.TP
+int \fIdimids\fP[]
+is a vector of dimension ID's and defines the shape of a netCDF variable.
+The size of the vector shall be greater than or equal to the
+rank (i.e. the number of dimensions) of the variable (\fIndims\fP).
+The vector shall be ordered by the speed with which a dimension varies:
+\fIdimids\fP[\fIndims\fP-1]
+shall be the dimension ID of the most rapidly
+varying dimension and
+\fIdimids\fP[0]
+shall be the dimension ID of the most slowly
+varying dimension.
+The maximum possible number of
+dimensions for a variable is given by the symbolic constant
+\fBNC_MAX_VAR_DIMS\fR.
+.TP
+int \fIdimid\fP
+is the ID of a netCDF dimension.
+netCDF dimension ID's are allocated sequentially from the
+non-negative
+integers beginning with 0.
+.TP
+int \fIndims\fP
+is either the total number of dimensions in a netCDF dataset or the rank
+(i.e. the number of dimensions) of a netCDF variable.
+The value shall not be negative or greater than the symbolic constant
+\fBNC_MAX_VAR_DIMS\fR.
+.TP
+int \fIvarid\fP
+is the ID of a netCDF variable or (for the attribute-access functions)
+the symbolic constant
+\fBNC_GLOBAL\fR,
+which is used to reference global attributes.
+netCDF variable ID's are allocated sequentially from the
+non-negative
+integers beginning with 0.
+.TP
+int* \fInatts\fP
+is the number of global attributes in a netCDF dataset for the
+\fBnc_inquire(\|)\fR
+function or the number
+of attributes associated with a netCDF variable for the
+\fBnc_varinq(\|)\fR
+function.
+.TP
+const size_t \fIindex\fP[]
+specifies the indicial coordinates of the netCDF data value to be accessed.
+The indices start at 0;
+thus, for example, the first data value of a
+two-dimensional variable is (0,0).
+The size of the vector shall be at least the rank of the associated
+netCDF variable and its elements shall correspond, in order, to the
+variable's dimensions.
+.TP
+const size_t \fIstart\fP[]
+specifies the starting point
+for accessing a netCDF variable's data values
+in terms of the indicial coordinates of
+the corner of the array section.
+The indices start at 0;
+thus, the first data
+value of a variable is (0, 0, ..., 0).
+The size of the vector shall be at least the rank of the associated
+netCDF variable and its elements shall correspond, in order, to the
+variable's dimensions.
+.TP
+const size_t \fIcount\fP[]
+specifies the number of indices selected along each dimension of the
+array section.
+Thus, to access a single value, for example, specify \fIcount\fP as
+(1, 1, ..., 1).
+Note that, for strided I/O, this argument must be adjusted
+to be compatible with the \fIstride\fP and \fIstart\fP arguments so that
+the interaction of the
+three does not attempt to access an invalid data co-ordinate.
+The elements of the
+\fIcount\fP vector correspond, in order, to the variable's dimensions.
+.TP
+const size_t \fIstride\fP[]
+specifies the sampling interval along each dimension of the netCDF
+variable. The elements of the stride vector correspond, in order,
+to the netCDF variable's dimensions (\fIstride\fP[0])
+gives the sampling interval along the most slowly
+varying dimension of the netCDF variable). Sampling intervals are
+specified in type-independent units of elements (a value of 1 selects
+consecutive elements of the netCDF variable along the corresponding
+dimension, a value of 2 selects every other element, etc.).
+A \fBNULL\fR stride argument is treated as (1, 1, ... , 1).
+.TP
+\fIimap\fP
+specifies the mapping between the dimensions of a netCDF variable and
+the in-memory structure of the internal data array. The elements of
+the index mapping vector correspond, in order, to the netCDF variable's
+dimensions (\fIimap\fP[0] gives the distance
+between elements of the internal array corresponding to the most
+slowly varying dimension of the netCDF variable).
+Distances between elements are specified in type-independent units of
+elements (the distance between internal elements that occupy adjacent
+memory locations is 1 and not the element's byte-length as in netCDF 2).
+A \fBNULL\fR pointer means the memory-resident values have
+the same structure as the associated netCDF variable.
+.SH "VARIABLE PREFILLING"
+.LP
+By default, the netCDF interface sets the values of
+all newly-defined variables of finite length (i.e. those that do not have
+an unlimited, dimension) to the type-dependent fill-value associated with each
+variable. This is done when \fBnc_enddef(\|)\fR
+is called. The
+fill-value for a variable may be changed from the default value by
+defining the attribute `\fB_FillValue\fR' for the variable. This
+attribute must have the same type as the variable and be of length one.
+.LP
+Variables with an unlimited dimension are also prefilled, but on
+an `as needed' basis. For example, if the first write of such a
+variable is to position 5, then
+positions
+0 through 4
+(and no others)
+would be set to the fill-value at the same time.
+.LP
+This default prefilling of data values may be disabled by
+or'ing the
+\fBNC_NOFILL\fR
+flag into the mode parameter of \fBnc_open(\|)\fR or \fBnc_create(\|)\fR,
+or, by calling the function \fBnc_set_fill(\|)\fR
+with the argument \fBNC_NOFILL\fR.
+For variables that do not use the unlimited dimension,
+this call must
+be made before
+\fBnc_enddef(\|)\fR.
+For variables that
+use the unlimited dimension, this call
+may be made at any time.
+.LP
+One can obtain increased performance of the netCDF interface by using
+this feature, but only at the expense of requiring the application to set
+every single data value. The performance
+enhancing behavior of this function is dependent on the particulars of
+the implementation and dataset format.
+The flag value controlled by \fBnc_set_fill(\|)\fR
+is per netCDF ID,
+not per variable or per write.
+Allowing this to change affects the degree to which
+a program can be effectively parallelized.
+Given all of this, we state that the use
+of this feature may not be available (or even needed) in future
+releases. Programmers are cautioned against heavy reliance upon this
+feature.
+.HP
+\fBint nc_setfill(int \fIncid\fP, int \fIfillmode\fP, int* \fIold_fillemode\fP)\fR
+.sp
+(Corresponds to \fBncsetfill(\|)\fR in version 2)
+.sp
+Determines whether or not variable prefilling will be done (see
+above).
+The netCDF dataset shall be writable.
+\fIfillmode\fP is either \fBNC_FILL\fR
+to enable prefilling (the
+default) or \fBNC_NOFILL\fR
+to disable prefilling.
+This function returns the previous setting in \fIold_fillmode\fP.
+
+.HP
+.SH "MPP FUNCTION DESCRIPTIONS"
+.LP
+Additional functions for use on SGI/Cray MPP machines (_CRAYMPP).
+These are used to set and inquire which PE is the base for MPP
+for a particular netCDF. These are only relevant when
+using the SGI/Cray ``global''
+Flexible File I/O layer and desire to have
+only a subset of PEs to open the specific netCDF file.
+For technical reasons, these functions are available on all platforms.
+On a platform other than SGI/Cray MPP, it is as if
+only processor available were processor 0.
+.LP
+To use this feature, you need to specify a communicator group and call
+\fBglio_group_mpi(\|)\fR or \fBglio_group_shmem(\|)\fR prior to the netCDF
+\fBnc_open(\|)\fR and \fBnc_create(\|)\fR calls.
+.HP
+\fBint nc__create_mp(const char \fIpath\fP[], int \fIcmode\fP, size_t \fIinitialsize\fP, int \fIpe\fP, size_t* \fIchunksize\fP, int* \fIncid\fP)\fR
+.sp
+Like \fBnc__create(\|)\fR but allows the base PE to be set.
+.sp
+The argument \fIpe\fP sets the base PE at creation time. In the MPP
+environment, \fBnc__create(\|)\fR and \fBnc_create(\|)\fR set the base PE to processor
+zero by default.
+.HP
+\fBint nc__open_mp(const char \fIpath\fP[], int \fImode\fP, int \fIpe\fP, size_t* \fIchunksize\fP, int* \fIncid\fP)\fR
+.sp
+Like \fBnc__open(\|)\fR but allows the base PE to be set.
+The argument \fIpe\fP sets the base PE at creation time. In the MPP
+environment, \fBnc__open(\|)\fR and \fBnc_open(\|)\fR set the base PE to processor
+zero by default.
+.HP
+\fBint nc_inq_base_pe(int \fIncid\fP, int* \fIpe\fP)\fR
+.sp
+Inquires of the netCDF dataset which PE is being used as the base for MPP use.
+This is safe to use at any time.
+.HP
+\fBint nc_set_base_pe(int \fIncid\fP, int \fIpe\fP)\fR
+.sp
+Resets the base PE for the netCDF dataset.
+Only perform this operation when the affected communicator group
+synchronizes before and after the call.
+This operation is very risky and should only be contemplated
+under only the most extreme cases.
+.SH "ENVIRONMENT VARIABLES"
+.TP 4
+.B NETCDF_FFIOSPEC
+Specifies the Flexible File I/O buffers for netCDF I/O when executing
+under the UNICOS operating system (the variable is ignored on other
+operating systems).
+An appropriate specification can greatly increase the efficiency of
+netCDF I/O -- to the extent that it can actually surpass FORTRAN binary
+I/O.
+This environment variable has been made a little more generalized,
+such that other FFIO option specifications can now be added.
+The default specification is \fBbufa:336:2\fP,
+unless a current FFIO specification is in operation,
+which will be honored.
+See UNICOS Flexible File I/O for more information.
+.SH "MAILING-LISTS"
+.LP
+Both a mailing list and a digest are available for
+discussion of the netCDF interface and announcements about netCDF bugs,
+fixes, and enhancements.
+To begin or change your subscription to either the mailing-list or the
+digest, send one of the following in the body (not
+the subject line) of an email message to "majordomo@unidata.ucar.edu".
+Use your email address in place of \fIjdoe@host.inst.domain\fP.
+.sp
+To subscribe to the netCDF mailing list:
+.RS
+\fBsubscribe netcdfgroup \fIjdoe@host.inst.domain\fR
+.RE
+To unsubscribe from the netCDF mailing list:
+.RS
+\fBunsubscribe netcdfgroup \fIjdoe@host.inst.domain\fR
+.RE
+To subscribe to the netCDF digest:
+.RS
+\fBsubscribe netcdfdigest \fIjdoe@host.inst.domain\fR
+.RE
+To unsubscribe from the netCDF digest:
+.RS
+\fBunsubscribe netcdfdigest \fIjdoe@host.inst.domain\fR
+.RE
+To retrieve the general introductory information for the mailing list:
+.RS
+\fBinfo netcdfgroup\fR
+.RE
+To get a synopsis of other majordomo commands:
+.RS
+\fBhelp\fR
+.RE
+.SH "SEE ALSO"
+.LP
+.BR ncdump (1),
+.BR ncgen (1),
+.BR netcdf (3).
+.LP
+\fInetCDF User's Guide\fP, published
+by the Unidata Program Center, University Corporation for Atmospheric
+Research, located in Boulder, Colorado.
+
+NetCDF home page at http:/www.unidata.ucar.edu/netcdf.
diff --git a/privatemodules/nc4/share/man/man3/netcdf_fortran.3 b/privatemodules/nc4/share/man/man3/netcdf_fortran.3
new file mode 100644
index 0000000000000000000000000000000000000000..b420e4c4770bc82b65d84e152dce52168f156ae9
--- /dev/null
+++ b/privatemodules/nc4/share/man/man3/netcdf_fortran.3
@@ -0,0 +1,1370 @@
+.nr yr \n(yr+1900
+.af mo 01
+.af dy 01
+.TH NETCDF 3 "1997-04-18" "Printed: \n(yr-\n(mo-\n(dy" "UNIDATA LIBRARY FUNCTIONS"
+.SH NAME
+netcdf \- Unidata's Network Common Data Form (netCDF) library interface
+.SH SYNOPSIS
+.ft B
+.na
+.nh
+include netcdf.inc
+.sp
+.SS Most Systems:
+f77 ... \-lnetcdf \-lhdf5_hl \-lhdf5 \-lz \-lm
+.sp
+.SS CRAY PVP Systems:
+f90 \-dp \-i64 ... \-lnetcdf
+
+.ad
+.hy
+Complete documentation for the netCDF libraries can be found at the netCDF website: http://www.unidata.ucar.edu/software/netcdf/.
+.sp
+.SH "LIBRARY VERSION"
+.LP
+This document describes versions 3 and 4
+of Unidata netCDF data-access interface
+for the FORTRAN programming language.
+.HP
+\fBcharacter*80 nf_inq_libvers(void)\fR
+.sp
+Returns a string identifying the version of the netCDF library, and
+when it was built, like: "3.1a of Aug 22 1996 12:57:47 $".
+.LP
+The RCS \fBident(1)\fP command will find a string like
+"$\|Id: @\|(#) netcdf library version 3.1a of Sep 6 1996 15:56:26 $"
+in the library. The SCCS \fBwhat(1)\fP command will find a string like
+"netcdf library version 3.1a of Aug 23 1996 16:07:40 $".
+.SH "RETURN VALUES"
+.LP
+All netCDF functions (except
+\fBnf_inq_libvers(\|)\fR and \fBnf_strerror(\|)\fR) return an integer status.
+
+If this returned status value is not equal to
+\fBNF_NOERR\fR (zero), it
+indicates that an error occurred. The possible status values are defined in
+netcdf.inc.
+.HP
+\fBcharacter*80 nf_strerror(integer \fIstatus\fP)\fR
+.sp
+Returns a string textual translation of the \fIstatus\fP
+value, like "Attribute or variable name contains illegal characters"
+or "No such file or directory".
+.sp
+.SH "FILE OPERATIONS"
+.LP
+.HP
+\fBinteger function nf_create(character*(*) \fIpath\fP, integer \fIcmode\fP, integer \fIncid\fP)\fR
+.sp
+Creates a new netCDF dataset at \fIpath\fP,
+returning a netCDF ID in \fIncid\fP.
+The argument \fIcmode\fP may include the bitwise-or
+of the following flags:
+\fBNF_NOCLOBBER\fR
+to protect existing datasets (default
+silently blows them away),
+\fBNF_SHARE\fR
+for synchronous dataset updates for classic format files
+(default is to buffer accesses),
+.sp
+When a netCDF dataset is created, is is opened
+\fBNF_WRITE\fR.
+The new netCDF dataset is in define mode.
+\fBNF_64BIT_OFFSET\fR.
+to create a file in the 64-bit offset format
+(as opposed to classic format, the default).
+\fBNF_TRUE\fR to create a netCDF-4/HDF5 file,
+and \fBNF_CLASSIC_MODEL\fR to guarantee that netCDF-4/HDF5 files maintain compatibility
+with the netCDF classic data model.
+.HP
+\fBinteger function nf__create(character*(*) \fIpath\fP, integer \fIcmode\fP, integer \fIinitialsize\fP, integer \fIchunksize\fP, integer \fIncid\fP)\fR
+.sp
+Like \fBnf_create(\|)\fR but has additional performance tuning parameters.
+.sp
+The argument \fIinitialsize\fP sets the initial size of the file at
+creation time.
+.sp
+See \fBnf__open(\|)\fR below for an explanation of the \fIchunksize\fP
+parameter.
+.HP
+\fBinteger function nf_open(character*(*) \fIpath\fP, integer \fImode\fP, integer \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncopn(\|)\fR in version 2)
+.sp
+Opens a existing netCDF dataset at \fIpath\fP
+returning a netCDF ID
+in \fIncid\fP.
+The type of access is described by the \fImode\fP parameter,
+which may include the bitwise-or
+of the following flags:
+\fBNF_WRITE\fR
+for read-write access (default
+read-only),
+\fBNF_SHARE\fR
+for synchronous dataset updates (default is
+to buffer accesses), and
+\fBNF_LOCK\fR
+(not yet implemented).
+.sp
+As of NetCDF version 4.1, and if TRUE support was enabled
+when the NetCDF library was built, the path parameter
+may specify a TRUE URL. In this case, the access mode is
+forced to be read-only.
+.HP
+\fBinteger function nf__open(character*(*) \fIpath\fP, integer \fImode\fP, integer \fIchunksize\fP, integer \fIncid\fP)\fR
+.sp
+Like \fBnf_open(\|)\fR but has an additional performance tuning parameter.
+.sp
+The argument referenced by \fIchunksize\fP controls a space versus time
+tradeoff, memory allocated in the netcdf library versus number of system
+calls.
+Because of internal requirements, the value may not be set to exactly
+the value requested.
+The actual value chosen is returned by reference.
+Using the value \fBNF_SIZEHINT_DEFAULT\fR causes the library to choose a
+default.
+How the system choses the default depends on the system.
+On many systems, the "preferred I/O block size" is available from the
+\fBstat()\fR system call, \fBstruct stat\fR member \fBst_blksize\fR.
+If this is available it is used. Lacking that, twice the system pagesize
+is used.
+Lacking a call to discover the system pagesize, we just set default
+chunksize to 8192.
+.sp
+The chunksize is a property of a given open netcdf descriptor
+\fIncid\fP, it is not a persistent property of the netcdf dataset.
+.sp
+As with \fBnf__open(\|)\fR, the path parameter
+may specify a TRUE URL, but the tuning parameters are ignored.
+.HP
+\fBinteger function nf_redef(integer \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncredf(\|)\fR in version 2)
+.sp
+Puts an open netCDF dataset into define mode,
+so dimensions, variables, and attributes can be added or renamed and
+attributes can be deleted.
+.HP
+\fBinteger function nf_enddef(integer \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncendf(\|)\fR in version 2)
+.sp
+Takes an open netCDF dataset out of define mode.
+The changes made to the netCDF dataset
+while it was in define mode are checked and committed to disk if no
+problems occurred. Some data values may be written as well,
+see "VARIABLE PREFILLING" below.
+After a successful call, variable data can be read or written to the dataset.
+.HP
+\fBinteger function nf__enddef(integer \fIncid\fP, integer \fIh_minfree\fP, integer \fIv_align\fP, integer \fIv_minfree\fP, integer \fIr_align\fP)\fR
+.sp
+Like \fBnf_enddef(\|)\fR but has additional performance tuning parameters.
+.sp
+Caution: this function exposes internals of the netcdf version 1 file
+format.
+It may not be available on future netcdf implementations.
+.sp
+The current netcdf file format has three sections,
+the "header" section, the data section for fixed size variables, and
+the data section for variables which have an unlimited dimension (record
+variables).
+The header begins at the beginning of the file. The index
+(offset) of the beginning of the other two sections is contained in the
+header. Typically, there is no space between the sections. This causes
+copying overhead to accrue if one wishes to change the size of the
+sections,
+as may happen when changing names of things, text attribute values,
+adding
+attributes or adding variables. Also, for buffered i/o, there may be
+advantages
+to aligning sections in certain ways.
+.sp
+The minfree parameters allow one to control costs of future calls
+to \fBnf_redef(\|)\fR, \fBnf_enddef(\|)\fR by requesting that \fIminfree\fP bytes be
+available at the end of the section.
+The \fIh_minfree\fP parameter sets the pad
+at the end of the "header" section. The \fIv_minfree\fP parameter sets
+the pad at the end of the data section for fixed size variables.
+.sp
+The align parameters allow one to set the alignment of the beginning of
+the corresponding sections. The beginning of the section is rounded up
+to an index which is a multiple of the align parameter. The flag value
+\fBNF_ALIGN_CHUNK\fR tells the library to use the chunksize (see above)
+as the align parameter.
+The \fIv_align\fP parameter controls the alignment of the beginning of
+the data section for fixed size variables.
+The \fIr_align\fP parameter controls the alignment of the beginning of
+the data section for variables which have an unlimited dimension (record
+variables).
+.sp
+The file format requires mod 4 alignment, so the align parameters
+are silently rounded up to multiples of 4. The usual call,
+\fBnf_enddef(\fIncid\fP)\fR
+is equivalent to
+\fBnf__enddef(\fIncid\fP, 0, 4, 0, 4)\fR.
+.sp
+The file format does not contain a "record size" value, this is
+calculated from the sizes of the record variables. This unfortunate fact
+prevents us from providing minfree and alignment control of the
+"records"
+in a netcdf file. If you add a variable which has an unlimited
+dimension,
+the third section will always be copied with the new variable added.
+.HP
+\fBinteger function nf_sync(integer \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncsnc(\|)\fR in version 2)
+.sp
+Unless the
+\fBNF_SHARE\fR
+bit is set in
+\fBnf_open(\|)\fR or \fBnf_create(\|)\fR,
+accesses to the underlying netCDF dataset are
+buffered by the library. This function synchronizes the state of
+the underlying dataset and the library.
+This is done automatically by
+\fBnf_close(\|)\fR and \fBnf_enddef(\|)\fR.
+.HP
+\fBinteger function nf_abort(integer \fIncid\fP)\fR
+.sp
+(Corresponds to \fBncabor(\|)\fR in version 2)
+.sp
+You don't need to call this function.
+This function is called automatically by
+\fBnf_close(\|)\fR
+if the netCDF was in define mode and something goes wrong with the commit.
+If the netCDF dataset isn't in define mode, then this function is equivalent to
+\fBnf_close(\|)\fR.
+If it is called after
+\fBnf_redef(\|)\fR,
+but before
+\fBnf_enddef(\|)\fR,
+the new definitions are not committed and the dataset is closed.
+If it is called after
+\fBnf_create(\|)\fR
+but before
+\fBnf_enddef(\|)\fR,
+the dataset disappears.
+.HP
+\fBinteger function nf_close(integer \fIncid\fP)\fR
+.sp
+(Corresponds to
+\fBncclos(\|)\fR in version 2)
+.sp
+Closes an open netCDF dataset.
+If the dataset is in define mode,
+\fBnf_enddef(\|)\fR
+will be called before closing.
+After a dataset is closed, its ID may be reassigned to another dataset.
+.HP
+\fBinteger function nf_inq(integer \fIncid\fP, integer \fIndims\fP, integer \fInvars\fP,
+integer \fInatts\fP, integer \fIunlimdimid\fP)\fR
+.HP
+\fBinteger function nf_inq_ndims(integer \fIncid\fP, integer \fIndims\fP)\fR
+.HP
+\fBinteger function nf_inq_nvars(integer \fIncid\fP, integer \fInvars\fP)\fR
+.HP
+\fBinteger function nf_inq_natts(integer \fIncid\fP, integer \fInatts\fP)\fR
+.HP
+\fBinteger function nf_inq_unlimdim(integer \fIncid\fP, integer \fIunlimdimid\fP)\fR
+.HP
+\fBinteger function nf_inq_format(integer \fIncid\fP, integer \fIformatn\fP)\fR
+.sp
+Use these functions to find out what is in a netCDF dataset.
+Upon successful return,
+\fIndims\fP will contain the
+number of dimensions defined for this netCDF dataset,
+\fInvars\fP will contain the number of variables,
+\fInatts\fP will contain the number of attributes, and
+\fIunlimdimid\fP will contain the
+dimension ID of the unlimited dimension if one exists, or
+0 otherwise.
+\fIformatn\fP will contain the version number of the dataset <format>, one of
+\fBNF_FORMAT_CLASSIC\fR, \fBNF_FORMAT_64BIT\fR, \fBNF_FORMAT_NETCDF4\fR, or
+\fBNF_FORMAT_NETCDF4_CLASSIC\fR.
+
+.HP
+\fBinteger function nf_def_dim(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIlen\fP, integer \fIdimid\fP)\fR
+.sp
+(Corresponds to \fBncddef(\|)\fR in version 2)
+.sp
+Adds a new dimension to an open netCDF dataset, which must be
+in define mode.
+\fIname\fP is the dimension name.
+\fIdimid\fP will contain the dimension ID of the newly created dimension.
+
+.SH "USER DEFINED TYPES"
+.LP
+Users many define types for a netCDF-4/HDF5 file (unless the
+\fBNF_CLASSIC_MODEL\fR was used when the file was creates). Users may
+define compound types, variable length arrays, enumeration types, and
+opaque types.
+.sp
+
+.HP
+\fBinteger function nf_def_compound(integer \fIncid\fP, integer \fIsize\fP, character*(*) \fIname\fP, integer \fItypeidp\fP)\fR
+.sp
+Define a compound type.
+.HP
+\fBinteger function nf_insert_compound(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIoffset\fP, integer \fIfield_typeid\fP)\fR
+.sp
+Insert an element into a compound type. May not be done after type has been used, or after the type has been written by an enddef.
+.HP
+\fBinteger function nf_insert_array_compound(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIoffset\fP, integer \fIfield_typeid\fP, integer \fIndims\fP, integer \fIdim_sizes\fP(1))\fR
+.sp
+Insert an array into a compound type.
+.HP
+\fBinteger function nf_inq_type(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIsizep\fP)\fR
+.sp
+Learn about a type.
+.HP
+\fBinteger function nf_inq_compound(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIsizep\fP, integer \fInfieldsp\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_name(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_size(integer \fIncid\fP, integer \fI\fP, integer \fIsizep\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_nfields(integer \fIncid\fP, integer \fI\fP, integer \fInfieldsp\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fieldname(integer \fIncid\fP, integer \fI\fP, integer \fIfieldid\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fieldindex(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIfieldidp\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fieldoffset(integer \fIncid\fP, integer \fI\fP, integer \fIfieldid\fP, integer \fIoffsetp\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fieldtype(integer \fIncid\fP, integer \fI\fP, integer \fIfieldid\fP, integer \fIfield_typeid\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fieldndims(integer \fIncid\fP, integer \fI\fP, integer \fIfieldid\fP, integer \fIndims\fP)\fR
+.HP
+\fBinteger function nf_inq_compound_fielddim_sizes(integer \fIncid\fP, integer \fI\fP, integer \fIfieldid\fP, integer \fIdim_sizes\fP(1))\fR
+.sp
+Learn about a compound type.
+.HP
+\fBinteger function nf_def_vlen(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIbase_typeid\fP, integer \fIxtypep\fP)\fR
+.sp
+Create a varaible length array type.
+.HP
+\fBinteger function nf_inq_vlen(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fIdatum_sizep\fP, integer \fIbase_nc_typep\fP)\fR
+.sp
+Learn about a varaible length array type.
+.HP
+\fBinteger function nf_free_vlen(nc_vlen_t *vl)\fR
+.sp
+Free memory comsumed by reading data of a varaible length array type.
+.HP
+\fBinteger function nf_put_vlen_element(integer \fIncid\fP, integer \fI\fP, void * \fIvlen_element\fP, integer \fIlen\fP, void * \fIdata\fP)\fR
+.sp
+Write one VLEN.
+.HP
+\fBinteger function nf_get_vlen_element(integer \fIncid\fP, integer \fI\fP, void * \fIvlen_element\fP, integer \fIlen\fP, void * \fIdata\fP)\fR
+.sp
+Read one VLEN.
+.HP
+\fBinteger function nf_free_string(integer \fIlen\fP, char **data)\fR
+.sp
+Free memory comsumed by reading data of a string type.
+.HP
+\fBinteger function nf_inq_user_type(integer \fIncid\fP, integer \fI\fP, character*(*) \fIname\fP, integer \fI\fP, integer \fI\fP, integer \fI\fP, integer \fI\fP)\fR
+.sp
+Learn about a user define type.
+.HP
+\fBinteger function nf_def_enum(integer \fIncid\fP, integer \fIbase_typeid\fP, character*(*) \fIname\fP, integer \fItypeidp\fP)\fR
+.sp
+Define an enumeration type.
+.HP
+\fBinteger function nf_insert_enum(integer \fIncid\fP, integer \fIbase_typeid\fP, character*(*) \fIname\fP, const void *value)\fR
+.sp
+Insert a name-value pair into enumeration type.
+.HP
+\fBinteger function nf_inq_enum_member(integer \fIncid\fP, integer \fIxtype\fP, integer \fIidx\fP, character*(*) \fIname\fP, void *value)\fR
+.HP
+\fBinteger function nf_inq_enum_ident(integer \fIncid\fP, integer \fIxtype\fP, integer \fIidx\fP, integer*8 \fIvalue\fP, character*(*) \fIidentifier\fP)\fR
+.sp
+Learn about a name-value pair into enumeration type.
+.HP
+\fBinteger function nf_def_opaque(integer \fIncid\fP, integer \fIsize\fP, character*(*) \fIname\fP, integer \fIxtypep\fP)\fR
+.sp
+Create an opaque type.
+.HP
+\fBinteger function nf_inq_opaque(integer \fIncid\fP, integer \fIxtype\fP, character*(*) \fIname\fP, integer \fIsizep\fP)\fR
+.sp
+Learn about opaque type.
+.HP
+.SH "GROUPS"
+.sp
+Users may organize data into hierarchical groups in netCDF-4/HDF5 files (unless \fBNF_CLASSIC_MODEL\fR was used when creating the file).
+.HP
+\fBinteger function nf_inq_grps(integer \fIncid\fP, integer \fInumgrps\fP, integer \fIncids\fP(1))\fR
+.sp
+Learn how many groups (and their ncids) are available from the group represented by ncid.
+.HP
+\fBinteger function nf_inq_grpname(integer \fIncid\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_grpname_full(integer \fIncid\fP, integer \fIlen\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_grpname_len(integer \fIncid\fP, integer \fIlen\fP)\fR
+.HP
+\fBinteger function nf_inq_grp_parent(integer \fIncid\fP, integer \fIncid\fP)\fR
+.HP
+\fBinteger function nf_inq_grp_ncid(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIncid\fP)\fR
+.HP
+\fBinteger function nf_inq_full_ncid(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIncid\fP)\fR
+.sp
+Learn about a group.
+.HP
+\fBinteger function nf_inq_varids(integer \fIncid\fP, integer \fInvars\fP, integer \fI\fP)\fR
+.sp
+Get the varids in a group.
+.HP
+\fBinteger function nf_inq_dimids(integer \fIncid\fP, integer \fIndims\fP, integer \fIdimids\fP, integer \fIinclude_parents\fP)\fR
+.sp
+Get the dimids in a group and (potentially) its parents.
+.HP
+\fBinteger function nf_inq_typeids(integer \fIncid\fP, integer \fIntypes\fP, integer \fItypeids\fP(1))\fR
+.sp
+Get the typeids of user-defined types in a group.
+.HP
+\fBinteger function nf_def_grp(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIncid\fP)\fR
+.sp
+Create a group.
+.LP
+
+.SH "DIMENSIONS"
+.LP
+.HP
+\fBinteger function nf_inq_dimid(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIdimid\fP)\fR
+.sp
+(Corresponds to \fBncdid(\|)\fR in version 2)
+.sp
+Given a dimension name, returns the ID of a netCDF dimension in \fIdimid\fP.
+.HP
+\fBinteger function nf_inq_dim(integer \fIncid\fP, integer \fIdimid\fP, character*(*) \fIname\fP, integer \fIlen\fP)\fR
+.HP
+\fBinteger function nf_inq_dimname(integer \fIncid\fP, integer \fIdimid\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_dimlen(integer \fIncid\fP, integer \fIdimid\fP, integer \fIlen\fP)\fR
+.sp
+Use these functions to find out about a dimension.
+
+\fIname\fP should be big enough (\fBNF_MAX_NAME\fR)
+to hold the dimension name as the name will be copied into your storage.
+The length return parameter, \fIlen\fP
+will contain the size of the dimension.
+For the unlimited dimension, the returned length is the current
+maximum value used for writing into any of the variables which use
+the dimension.
+.HP
+\fBinteger function nf_rename_dim(integer \fIncid\fP, integer \fIdimid\fP, character*(*) \fIname\fP)\fR
+.sp
+(Corresponds to \fBncdren(\|)\fR in version 2)
+.sp
+Renames an existing dimension in an open netCDF dataset.
+If the new name is longer than the old name, the netCDF dataset must be in
+define mode.
+You cannot rename a dimension to have the same name as another dimension.
+.SH "VARIABLES"
+.LP
+.HP
+\fBinteger function nf_def_var(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIndims\fP, integer \fIdimids\fP(1), integer \fIvarid\fP)\fR
+.sp
+(Corresponds to \fBncvdef(\|)\fR in version 2)
+.sp
+Adds a new variable to a netCDF dataset. The netCDF must be in define mode.
+\fIvarid\fP will be set to the netCDF variable ID.
+.HP
+\fBinteger function nf_inq_varid(integer \fIncid\fP, character*(*) \fIname\fP, integer \fIvarid\fP)\fR
+.sp
+(Corresponds to \fBncvid(\|)\fR in version 2)
+.sp
+Returns the ID of a netCDF variable in \fIvarid\fP given its name.
+.HP
+\fBinteger function nf_inq_var(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIndims\fP, integer \fIdimids\fP(1),
+integer \fInatts\fP)\fR
+.HP
+\fBinteger function nf_inq_varname(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP)\fR
+.HP
+\fBinteger function nf_inq_vartype(integer \fIncid\fP, integer \fIvarid\fP, integer \fIxtype\fP)\fR
+.HP
+\fBinteger function nf_inq_varndims(integer \fIncid\fP, integer \fIvarid\fP, integer \fIndims\fP)\fR
+.HP
+\fBinteger function nf_inq_vardimid(integer \fIncid\fP, integer \fIvarid\fP, integer \fIdimids\fP(1))\fR
+.HP
+\fBinteger function nf_inq_varnatts(integer \fIncid\fP, integer \fIvarid\fP, integer \fInatts\fP)\fR
+.sp
+Returns information about a netCDF variable, given its ID.
+
+.HP
+\fBinteger function nf_rename_var(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP)\fR
+.sp
+(Corresponds to \fBncvren(\|)\fR in version 2)
+.sp
+Changes the name of a netCDF variable.
+If the new name is longer than the old name, the netCDF must be in define mode.
+You cannot rename a variable to have the name of any existing variable.
+
+.SH "VARIABLES \fIin\fP NETCDF-4 FILES"
+.LP
+The following functions may only be used on variables in a
+netCDF-4/HDF5 data file. These functions must be called after the
+variable is defined, but before an enddef call.
+.sp
+\fBinteger function nf_def_var_deflate(integer \fIncid\fP, integer \fIvarid\fP, integer \fIshuffle\fP, integer \fIdeflate\fP, integer \fIdeflate_level\fP)\fR
+.sp
+Turn on compression and/or shuffle filter. (Shuffle filter is only useful for integer data.)
+.HP
+\fBinteger function nf_inq_var_deflate(integer \fIncid\fP, integer \fIvarid\fP, integer \fIshufflep\fP, integer \fIdeflatep\fP, integer \fIdeflate_levelp\fP)\fR
+.sp
+Learn about a variable's deflate settings.
+.HP
+\fBinteger function nf_def_var_fletcher32(integer \fIncid\fP, integer \fIvarid\fP, integer \fIfletcher32\fP)\fR
+.sp
+Turn on checksumming for a variable.
+.HP
+\fBinteger function nf_inq_var_fletcher32(integer \fIncid\fP, integer \fIvarid\fP, integer \fIfletcher32\fP)\fR
+.sp
+Learn about checksumming for a variable.
+.HP
+\fBinteger function nf_def_var_chunking(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstorage\fP, integer \fIchunksizesp\fP(1))\fR
+.sp
+Set chunksizes for a variable.
+.HP
+\fBinteger function nf_inq_var_chunking(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstoragep\fP, integer \fIchunksizesp\fP(1))\fR
+.sp
+Learn about chunksizes for a variable.
+.HP
+\fBinteger function nf_def_var_fill(integer \fIncid\fP, integer \fIvarid\fP, integer \fIno_fill\fP, integer \fIchunksizesp\fP(1))\fR
+.sp
+Set a fill value for a variable.
+.HP
+\fBinteger function nf_inq_var_fill(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstoragep\fP, integer \fIchunksizesp\fP(1))\fR
+.sp
+Learn the fill value for a variable.
+.HP
+\fBinteger function nf_def_var_endian(integer \fIncid\fP, integer \fIvarid\fP, integer \fIendian\fP)\fR
+.sp
+Set endianness of variable.
+.HP
+\fBinteger function nf_inq_var_endian(integer \fIncid\fP, integer \fIvarid\fP, integer \fIendianp\fP)\fR
+.sp
+Learn the endianness of a variable.
+.HP
+
+.SH "WRITING AND READING WHOLE VARIABLES"
+.LP
+.HP
+\fBinteger function nf_put_var_text(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIout\fP)\fR
+
+.HP
+\fBinteger function nf_put_var_int1(integer \fIncid\fP, integer \fIvarid\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_int2(integer \fIncid\fP, integer \fIvarid\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIout\fP(1))\fR
+
+.HP
+\fBinteger function nf_put_var_real(integer \fIncid\fP, integer \fIvarid\fP, real \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_double(integer \fIncid\fP, integer \fIvarid\fP, doubleprecision \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_uint(integer \fIncid\fP, integer \fIvarid\fP, integer*4 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_(integer \fIncid\fP, integer \fIvarid\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_var_string(integer \fIncid\fP, integer \fIvarid\fP, character* \fIout\fP(1))\fR
+
+
+.sp
+Writes an entire netCDF variable (i.e. all the values). The netCDF
+dataset must be open and in data mode. The type of the data is
+specified in the function name, and it is converted to the external
+type of the specified variable, if possible, otherwise an
+\fBNF_ERANGE\fR error is returned. Note that rounding is not performed
+during the conversion. Floating point numbers are truncated when
+converted to integers.
+.HP
+\fBinteger function nf_get_var_text(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_var_int1(integer \fIncid\fP, integer \fIvarid\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_int2(integer \fIncid\fP, integer \fIvarid\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIin\fP(1))\fR
+
+.HP
+\fBinteger function nf_get_var_real(integer \fIncid\fP, integer \fIvarid\fP, real \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_double(integer \fIncid\fP, integer \fIvarid\fP, doubleprecision \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_uint(integer \fIncid\fP, integer \fIvarid\fP, integer*4 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_(integer \fIncid\fP, integer \fIvarid\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_var_string(integer \fIncid\fP, integer \fIvarid\fP, character* \fIin\fP(1))\fR
+
+
+.sp
+Reads an entire netCDF variable (i.e. all the values).
+The netCDF dataset must be open and in data mode.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNF_ERANGE\fR error is returned.
+.SH "WRITING AND READING ONE DATUM"
+.LP
+.HP
+\fBinteger function nf_put_var1_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), character*1 \fI*out\fP)\fR
+
+.HP
+\fBinteger function nf_put_var1_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*1 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*2 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer \fI*out\fP)\fR
+
+.HP
+\fBinteger function nf_put_var1_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), real \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), doubleprecision \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*1 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*2 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*4 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*8 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*8 \fI*out\fP)\fR
+.HP
+\fBinteger function nf_put_var1_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), character* \fI*out\fP)\fR
+
+
+.sp
+Puts a single data value into a variable at the position \fIindex\fP of an
+open netCDF dataset that is in data mode. The type of the data is
+specified in the function name, and it is converted to the external type
+of the specified variable, if possible, otherwise an \fBNF_ERANGE\fR
+error is returned.
+.HP
+\fBinteger function nf_get_var1_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), character*1 \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_var1_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*1 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*2 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_var1_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), real \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), doubleprecision \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*1 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*2 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*4 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*8 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), integer*8 \fIin\fP)\fR
+.HP
+\fBinteger function nf_get_var1_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIindex\fP(1), character* \fIin\fP)\fR
+
+
+.sp
+Gets a single data value from a variable at the position \fIindex\fP
+of an open netCDF dataset that is in data mode.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNF_ERANGE\fR error is returned.
+.SH "WRITING AND READING AN ARRAY"
+.LP
+.HP
+\fBinteger function nf_put_vara_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), character*(*) \fIout\fP)\fR
+
+.HP
+\fBinteger function nf_put_vara_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIout\fP(1))\fR
+
+.HP
+\fBinteger function nf_put_vara_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), real \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), doubleprecision \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*4 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vara_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), character* \fIout\fP(1))\fR
+
+
+.sp
+Writes an array section of values into a netCDF variable of an open
+netCDF dataset, which must be in data mode. The array section is specified
+by the \fIstart\fP and \fIcount\fP vectors, which give the starting index
+and count of values along each dimension of the specified variable.
+The type of the data is
+specified in the function name and is converted to the external type
+of the specified variable, if possible, otherwise an \fBNF_ERANGE\fR
+error is returned.
+.HP
+\fBinteger function nf_get_vara_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), character*(*) \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_vara_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIin\fP(1))\fR
+
+.HP
+\fBinteger function nf_get_vara_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), real \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), doubleprecision \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*4 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vara_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), character* \fIin\fP(1))\fR
+
+
+.sp
+Reads an array section of values from a netCDF variable of an open
+netCDF dataset, which must be in data mode. The array section is specified
+by the \fIstart\fP and \fIcount\fP vectors, which give the starting index
+and count of values along each dimension of the specified variable.
+The data is converted from the external type of the specified variable,
+if necessary, to the type specified in the function name. If conversion is
+not possible, an \fBNF_ERANGE\fR error is returned.
+.SH "WRITING AND READING A SLICED ARRAY"
+.LP
+.HP
+\fBinteger function nf_put_vars_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), character*(*) \fIout\fP)\fR
+
+.HP
+\fBinteger function nf_put_vars_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer \fIout\fP(1))\fR
+
+.HP
+\fBinteger function nf_put_vars_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), real \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), doubleprecision \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*4 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_vars_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), character* \fIout\fP(1))\fR
+
+
+.sp
+These functions are used for \fIstrided output\fP, which is like the
+array section output described above, except that
+the sampling stride (the interval between accessed values) is
+specified for each dimension.
+For an explanation of the sampling stride
+vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.HP
+\fBinteger function nf_get_vars_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), character*(*) \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_vars_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer \fIin\fP(1))\fR
+
+.HP
+\fBinteger function nf_get_vars_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), real \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), doubleprecision \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*4 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_vars_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), character* \fIin\fP(1))\fR
+
+
+.sp
+These functions are used for \fIstrided input\fP, which is like the
+array section input described above, except that
+the sampling stride (the interval between accessed values) is
+specified for each dimension.
+For an explanation of the sampling stride
+vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.SH "WRITING AND READING A MAPPED ARRAY"
+.LP
+.HP
+\fBinteger function nf_put_varm_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, character*(*) \fIout\fP)\fR
+
+.HP
+\fBinteger function nf_put_varm_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer \fIout\fP(1))\fR
+
+.HP
+\fBinteger function nf_put_varm_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, real \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, doubleprecision \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*4 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_varm_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, character* \fIout\fP(1))\fR
+
+
+.sp
+These functions are used for \fImapped output\fP, which is like
+strided output described above, except that an additional index mapping
+vector is provided to specify the in-memory arrangement of the data
+values.
+For an explanation of the index
+mapping vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.HP
+\fBinteger function nf_get_varm_text(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, character*(*) \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_varm_int1(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_int2(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_int(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer \fIin\fP(1))\fR
+
+.HP
+\fBinteger function nf_get_varm_real(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, real \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_double(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, doubleprecision \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_ubyte(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_ushort(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_uint(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*4 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_uint64(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_varm_string(integer \fIncid\fP, integer \fIvarid\fP, integer \fIstart\fP(1), integer \fIcount\fP(1), integer \fIstride\fP(1), \fIimap\fP, character* \fIin\fP(1))\fR
+
+
+.sp
+These functions are used for \fImapped input\fP, which is like
+strided input described above, except that an additional index mapping
+vector is provided to specify the in-memory arrangement of the data
+values.
+For an explanation of the index
+mapping vector, see COMMON ARGUMENTS DESCRIPTIONS below.
+.SH "ATTRIBUTES"
+.LP
+.HP
+\fBinteger function nf_put_att_text(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, character*(*) \fIout\fP)\fR
+
+.HP
+\fBinteger function nf_put_att_int1(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_int2(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_int(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer \fIout\fP(1))\fR
+
+.HP
+\fBinteger function nf_put_att_real(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, real \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_double(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, doubleprecision \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_ubyte(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*1 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_ushort(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*2 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_uint(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*4 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_uint64(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, integer*8 \fIout\fP(1))\fR
+.HP
+\fBinteger function nf_put_att_string(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, character* \fIout\fP(1))\fR
+
+
+.HP
+\fBinteger function nf_put_att(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP, void * \fIip\fP)\fR
+.HP
+\fBinteger function nf_get_att(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, void * \fIip\fP)\fR
+.sp
+Unlike variables, attributes do not have
+separate functions for defining and writing values.
+This family of functions defines a new attribute with a value or changes
+the value of an existing attribute.
+If the attribute is new, or if the space required to
+store the attribute value is greater than before,
+the netCDF dataset must be in define mode.
+The parameter \fIlen\fP is the number of values from \fIout\fP to transfer.
+It is often one, except that for
+\fBnf_put_att_text(\|)\fR it will usually be
+\fBlen_trim(\fIout\fP)\fR.
+.sp
+For these functions, the type component of the function name refers to
+the in-memory type of the value, whereas the \fIxtype\fP argument refers to the
+external type for storing the value. An \fBNF_ERANGE\fR
+error results if
+a conversion between these types is not possible. In this case the value
+is represented with the appropriate fill-value for the associated
+external type.
+.HP
+\fBinteger function nf_inq_attname(integer \fIncid\fP, integer \fIvarid\fP, integer \fIattnum\fP, character*(*) \fIname\fP)\fR
+.sp
+Gets the
+name of an attribute, given its variable ID and attribute number.
+This function is useful in generic applications that
+need to get the names of all the attributes associated with a variable,
+since attributes are accessed by name rather than number in all other
+attribute functions. The number of an attribute is more volatile than
+the name, since it can change when other attributes of the same variable
+are deleted. The attributes for each variable are numbered
+from 1 (the first attribute) to
+\fInvatts\fP,
+where \fInvatts\fP is
+the number of attributes for the variable, as returned from a call to
+\fBnf_inq_varnatts(\|)\fR.
+
+.HP
+\fBinteger function nf_inq_att(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP, integer \fIlen\fP)\fR
+.HP
+\fBinteger function nf_inq_attid(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIattnum\fP)\fR
+.HP
+\fBinteger function nf_inq_atttype(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIxtype\fP)\fR
+.HP
+\fBinteger function nf_inq_attlen(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIlen\fP)\fR
+.sp
+These functions return information about a netCDF attribute,
+given its variable ID and name. The information returned is the
+external type in \fIxtype\fP
+and the number of elements in the attribute as \fIlen\fP.
+
+.HP
+\fBinteger function nf_copy_att(integer \fIncid\fP, integer \fIvarid_in\fP, character*(*) \fIname\fP, integer \fIncid_out\fP, integer \fIvarid_out\fP)\fR
+.sp
+Copies an
+attribute from one netCDF dataset to another. It can also be used to
+copy an attribute from one variable to another within the same netCDF.
+\fIncid_in\fP is the netCDF ID of an input netCDF dataset from which the
+attribute will be copied.
+\fIvarid_in\fP
+is the ID of the variable in the input netCDF dataset from which the
+attribute will be copied, or \fBNF_GLOBAL\fR
+for a global attribute.
+\fIname\fP
+is the name of the attribute in the input netCDF dataset to be copied.
+\fIncid_out\fP
+is the netCDF ID of the output netCDF dataset to which the attribute will be
+copied.
+It is permissible for the input and output netCDF ID's to be the same. The
+output netCDF dataset should be in define mode if the attribute to be
+copied does not already exist for the target variable, or if it would
+cause an existing target attribute to grow.
+\fIvarid_out\fP
+is the ID of the variable in the output netCDF dataset to which the attribute will
+be copied, or \fBNF_GLOBAL\fR to copy to a global attribute.
+.HP
+\fBinteger function nf_rename_att(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, character*(*) \fInewname\fP)\fR
+.sp
+Changes the
+name of an attribute. If the new name is longer than the original name,
+the netCDF must be in define mode. You cannot rename an attribute to
+have the same name as another attribute of the same variable.
+\fIname\fP is the original attribute name.
+\fInewname\fP
+is the new name to be assigned to the specified attribute. If the new name
+is longer than the old name, the netCDF dataset must be in define mode.
+.HP
+\fBinteger function nf_del_att(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP)\fR
+.sp
+Deletes an attribute from a netCDF dataset. The dataset must be in
+define mode.
+.HP
+\fBinteger function nf_get_att_text(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, character*(*) \fIin\fP)\fR
+
+.HP
+\fBinteger function nf_get_att_int1(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_int2(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_int(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer \fIin\fP(1))\fR
+
+.HP
+\fBinteger function nf_get_att_real(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, real \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_double(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, doubleprecision \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_ubyte(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*1 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_ushort(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*2 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_uint(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*4 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_uint64(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, integer*8 \fIin\fP(1))\fR
+.HP
+\fBinteger function nf_get_att_string(integer \fIncid\fP, integer \fIvarid\fP, character*(*) \fIname\fP, character* \fIin\fP(1))\fR
+
+
+.sp
+Gets the value(s) of a netCDF attribute, given its
+variable ID and name. Converts from the external type to the type
+specified in
+the function name, if possible, otherwise returns an \fBNF_ERANGE\fR
+error.
+All elements of the vector of attribute
+values are returned, so you must allocate enough space to hold
+them. If you don't know how much space to reserve, call
+\fBnf_inq_attlen(\|)\fR
+first to find out the length of the attribute.
+.SH "COMMON ARGUMENT DESCRIPTIONS"
+.LP
+In this section we define some common arguments which are used in the
+"FUNCTION DESCRIPTIONS" section.
+.TP
+integer \fIncid\fP
+is the netCDF ID returned from a previous, successful call to
+\fBnf_open(\|)\fR or \fBnf_create(\|)\fR
+.TP
+character*(*) \fIname\fP
+is the name of a dimension, variable, or attribute. The names of
+dimensions, variables and attributes consist of arbitrary
+sequences of alphanumeric characters (as well as underscore '_',
+period '.' and hyphen '-'), beginning with a letter or
+underscore. (However names commencing with underscore are reserved for
+system use.) Case is significant in netCDF names. A zero-length name
+is not allowed.
+
+The maximum allowable number of characters
+ is \fBNF_MAX_NAME\fR.
+.TP
+integer \fIxtype\fP
+specifies the external data type of a netCDF variable or attribute and
+is one of the following:
+\fBNF_BYTE\fR, \fBNF_CHAR\fR, \fBNF_SHORT\fR, \fBNF_INT\fR,
+\fBNF_FLOAT\fR, or \fBNF_DOUBLE\fR.
+These are used to specify 8-bit integers,
+characters, 16-bit integers, 32-bit integers, 32-bit IEEE floating point
+numbers, and 64-bit IEEE floating-point numbers, respectively.
+
+.TP
+integer \fIdimids\fP(1)
+is a vector of dimension ID's and defines the shape of a netCDF variable.
+The size of the vector shall be greater than or equal to the
+rank (i.e. the number of dimensions) of the variable (\fIndims\fP).
+The vector shall be ordered by the speed with which a dimension varies:
+\fIdimids\fP(1)
+shall be the dimension ID of the most rapidly
+varying dimension and
+\fIdimids\fP(\fIndims\fP)
+shall be the dimension ID of the most slowly
+varying dimension.
+The maximum possible number of
+dimensions for a variable is given by the symbolic constant
+\fBNF_MAX_VAR_DIMS\fR.
+.TP
+integer \fIdimid\fP
+is the ID of a netCDF dimension.
+netCDF dimension ID's are allocated sequentially from the
+positive
+integers beginning with 1.
+.TP
+integer \fIndims\fP
+is either the total number of dimensions in a netCDF dataset or the rank
+(i.e. the number of dimensions) of a netCDF variable.
+The value shall not be negative or greater than the symbolic constant
+\fBNF_MAX_VAR_DIMS\fR.
+.TP
+integer \fIvarid\fP
+is the ID of a netCDF variable or (for the attribute-access functions)
+the symbolic constant
+\fBNF_GLOBAL\fR,
+which is used to reference global attributes.
+netCDF variable ID's are allocated sequentially from the
+positive
+integers beginning with 1.
+.TP
+integer \fInatts\fP
+is the number of global attributes in a netCDF dataset for the
+\fBnf_inquire(\|)\fR
+function or the number
+of attributes associated with a netCDF variable for the
+\fBnf_varinq(\|)\fR
+function.
+.TP
+integer \fIindex\fP(1)
+specifies the indicial coordinates of the netCDF data value to be accessed.
+The indices start at 1;
+thus, for example, the first data value of a
+two-dimensional variable is (1,1).
+The size of the vector shall be at least the rank of the associated
+netCDF variable and its elements shall correspond, in order, to the
+variable's dimensions.
+.TP
+integer \fIstart\fP(1)
+specifies the starting point
+for accessing a netCDF variable's data values
+in terms of the indicial coordinates of
+the corner of the array section.
+The indices start at 1;
+thus, the first data
+value of a variable is (1, 1, ..., 1).
+The size of the vector shall be at least the rank of the associated
+netCDF variable and its elements shall correspond, in order, to the
+variable's dimensions.
+.TP
+integer \fIcount\fP(1)
+specifies the number of indices selected along each dimension of the
+array section.
+Thus, to access a single value, for example, specify \fIcount\fP as
+(1, 1, ..., 1).
+Note that, for strided I/O, this argument must be adjusted
+to be compatible with the \fIstride\fP and \fIstart\fP arguments so that
+the interaction of the
+three does not attempt to access an invalid data co-ordinate.
+The elements of the
+\fIcount\fP vector correspond, in order, to the variable's dimensions.
+.TP
+integer \fIstride\fP(1)
+specifies the sampling interval along each dimension of the netCDF
+variable. The elements of the stride vector correspond, in order,
+to the netCDF variable's dimensions (\fIstride\fP(1))
+gives the sampling interval along the most rapidly
+varying dimension of the netCDF variable). Sampling intervals are
+specified in type-independent units of elements (a value of 1 selects
+consecutive elements of the netCDF variable along the corresponding
+dimension, a value of 2 selects every other element, etc.).
+
+.TP
+\fIimap\fP
+specifies the mapping between the dimensions of a netCDF variable and
+the in-memory structure of the internal data array. The elements of
+the index mapping vector correspond, in order, to the netCDF variable's
+dimensions (\fIimap\fP(1) gives the distance
+between elements of the internal array corresponding to the most
+rapidly varying dimension of the netCDF variable).
+Distances between elements are specified in type-independent units of
+elements (the distance between internal elements that occupy adjacent
+memory locations is 1 and not the element's byte-length as in netCDF 2).
+
+.SH "VARIABLE PREFILLING"
+.LP
+By default, the netCDF interface sets the values of
+all newly-defined variables of finite length (i.e. those that do not have
+an unlimited, dimension) to the type-dependent fill-value associated with each
+variable. This is done when \fBnf_enddef(\|)\fR
+is called. The
+fill-value for a variable may be changed from the default value by
+defining the attribute `\fB_FillValue\fR' for the variable. This
+attribute must have the same type as the variable and be of length one.
+.LP
+Variables with an unlimited dimension are also prefilled, but on
+an `as needed' basis. For example, if the first write of such a
+variable is to position 5, then
+positions
+1 through 4
+(and no others)
+would be set to the fill-value at the same time.
+.LP
+This default prefilling of data values may be disabled by
+or'ing the
+\fBNF_NOFILL\fR
+flag into the mode parameter of \fBnf_open(\|)\fR or \fBnf_create(\|)\fR,
+or, by calling the function \fBnf_set_fill(\|)\fR
+with the argument \fBNF_NOFILL\fR.
+For variables that do not use the unlimited dimension,
+this call must
+be made before
+\fBnf_enddef(\|)\fR.
+For variables that
+use the unlimited dimension, this call
+may be made at any time.
+.LP
+One can obtain increased performance of the netCDF interface by using
+this feature, but only at the expense of requiring the application to set
+every single data value. The performance
+enhancing behavior of this function is dependent on the particulars of
+the implementation and dataset format.
+The flag value controlled by \fBnf_set_fill(\|)\fR
+is per netCDF ID,
+not per variable or per write.
+Allowing this to change affects the degree to which
+a program can be effectively parallelized.
+Given all of this, we state that the use
+of this feature may not be available (or even needed) in future
+releases. Programmers are cautioned against heavy reliance upon this
+feature.
+.HP
+\fBinteger function nf_setfill(integer \fIncid\fP, integer \fIfillmode\fP, integer \fIold_fillemode\fP)\fR
+
+.sp
+Determines whether or not variable prefilling will be done (see
+above).
+The netCDF dataset shall be writable.
+\fIfillmode\fP is either \fBNF_FILL\fR
+to enable prefilling (the
+default) or \fBNF_NOFILL\fR
+to disable prefilling.
+This function returns the previous setting in \fIold_fillmode\fP.
+
+.HP
+.SH "MPP FUNCTION DESCRIPTIONS"
+.LP
+Additional functions for use on SGI/Cray MPP machines (_CRAYMPP).
+These are used to set and inquire which PE is the base for MPP
+for a particular netCDF. These are only relevant when
+using the SGI/Cray ``global''
+Flexible File I/O layer and desire to have
+only a subset of PEs to open the specific netCDF file.
+For technical reasons, these functions are available on all platforms.
+On a platform other than SGI/Cray MPP, it is as if
+only processor available were processor 0.
+.LP
+To use this feature, you need to specify a communicator group and call
+\fBglio_group_mpi(\|)\fR or \fBglio_group_shmem(\|)\fR prior to the netCDF
+\fBnf_open(\|)\fR and \fBnf_create(\|)\fR calls.
+.HP
+\fBinteger function nf__create_mp(character*(*) \fIpath\fP, integer \fIcmode\fP, integer \fIinitialsize\fP, integer \fIpe\fP, integer \fIchunksize\fP, integer \fIncid\fP)\fR
+.sp
+Like \fBnf__create(\|)\fR but allows the base PE to be set.
+.sp
+The argument \fIpe\fP sets the base PE at creation time. In the MPP
+environment, \fBnf__create(\|)\fR and \fBnf_create(\|)\fR set the base PE to processor
+zero by default.
+.HP
+\fBinteger function nf__open_mp(character*(*) \fIpath\fP, integer \fImode\fP, integer \fIpe\fP, integer \fIchunksize\fP, integer \fIncid\fP)\fR
+.sp
+Like \fBnf__open(\|)\fR but allows the base PE to be set.
+The argument \fIpe\fP sets the base PE at creation time. In the MPP
+environment, \fBnf__open(\|)\fR and \fBnf_open(\|)\fR set the base PE to processor
+zero by default.
+.HP
+\fBinteger function nf_inq_base_pe(integer \fIncid\fP, integer \fIpe\fP)\fR
+.sp
+Inquires of the netCDF dataset which PE is being used as the base for MPP use.
+This is safe to use at any time.
+.HP
+\fBinteger function nf_set_base_pe(integer \fIncid\fP, integer \fIpe\fP)\fR
+.sp
+Resets the base PE for the netCDF dataset.
+Only perform this operation when the affected communicator group
+synchronizes before and after the call.
+This operation is very risky and should only be contemplated
+under only the most extreme cases.
+.SH "ENVIRONMENT VARIABLES"
+.TP 4
+.B NETCDF_FFIOSPEC
+Specifies the Flexible File I/O buffers for netCDF I/O when executing
+under the UNICOS operating system (the variable is ignored on other
+operating systems).
+An appropriate specification can greatly increase the efficiency of
+netCDF I/O -- to the extent that it can actually surpass FORTRAN binary
+I/O.
+This environment variable has been made a little more generalized,
+such that other FFIO option specifications can now be added.
+The default specification is \fBbufa:336:2\fP,
+unless a current FFIO specification is in operation,
+which will be honored.
+See UNICOS Flexible File I/O for more information.
+.SH "MAILING-LISTS"
+.LP
+Both a mailing list and a digest are available for
+discussion of the netCDF interface and announcements about netCDF bugs,
+fixes, and enhancements.
+To begin or change your subscription to either the mailing-list or the
+digest, send one of the following in the body (not
+the subject line) of an email message to "majordomo@unidata.ucar.edu".
+Use your email address in place of \fIjdoe@host.inst.domain\fP.
+.sp
+To subscribe to the netCDF mailing list:
+.RS
+\fBsubscribe netcdfgroup \fIjdoe@host.inst.domain\fR
+.RE
+To unsubscribe from the netCDF mailing list:
+.RS
+\fBunsubscribe netcdfgroup \fIjdoe@host.inst.domain\fR
+.RE
+To subscribe to the netCDF digest:
+.RS
+\fBsubscribe netcdfdigest \fIjdoe@host.inst.domain\fR
+.RE
+To unsubscribe from the netCDF digest:
+.RS
+\fBunsubscribe netcdfdigest \fIjdoe@host.inst.domain\fR
+.RE
+To retrieve the general introductory information for the mailing list:
+.RS
+\fBinfo netcdfgroup\fR
+.RE
+To get a synopsis of other majordomo commands:
+.RS
+\fBhelp\fR
+.RE
+.SH "SEE ALSO"
+.LP
+.BR ncdump (1),
+.BR ncgen (1),
+.BR netcdf (3f).
+.LP
+\fInetCDF User's Guide\fP, published
+by the Unidata Program Center, University Corporation for Atmospheric
+Research, located in Boulder, Colorado.
+
+NetCDF home page at http:/www.unidata.ucar.edu/netcdf.
diff --git a/privatemodules/nc4/share/man/man3/zlib.3 b/privatemodules/nc4/share/man/man3/zlib.3
new file mode 100644
index 0000000000000000000000000000000000000000..0160e62b69f419e1eb903cf1d323c07e1ec19936
--- /dev/null
+++ b/privatemodules/nc4/share/man/man3/zlib.3
@@ -0,0 +1,151 @@
+.TH ZLIB 3 "28 Apr 2013"
+.SH NAME
+zlib \- compression/decompression library
+.SH SYNOPSIS
+[see
+.I zlib.h
+for full description]
+.SH DESCRIPTION
+The
+.I zlib
+library is a general purpose data compression library.
+The code is thread safe, assuming that the standard library functions
+used are thread safe, such as memory allocation routines.
+It provides in-memory compression and decompression functions,
+including integrity checks of the uncompressed data.
+This version of the library supports only one compression method (deflation)
+but other algorithms may be added later
+with the same stream interface.
+.LP
+Compression can be done in a single step if the buffers are large enough
+or can be done by repeated calls of the compression function.
+In the latter case,
+the application must provide more input and/or consume the output
+(providing more output space) before each call.
+.LP
+The library also supports reading and writing files in
+.IR gzip (1)
+(.gz) format
+with an interface similar to that of stdio.
+.LP
+The library does not install any signal handler.
+The decoder checks the consistency of the compressed data,
+so the library should never crash even in the case of corrupted input.
+.LP
+All functions of the compression library are documented in the file
+.IR zlib.h .
+The distribution source includes examples of use of the library
+in the files
+.I test/example.c
+and
+.IR test/minigzip.c,
+as well as other examples in the
+.IR examples/
+directory.
+.LP
+Changes to this version are documented in the file
+.I ChangeLog
+that accompanies the source.
+.LP
+.I zlib
+is available in Java using the java.util.zip package:
+.IP
+http://java.sun.com/developer/technicalArticles/Programming/compression/
+.LP
+A Perl interface to
+.IR zlib ,
+written by Paul Marquess (pmqs@cpan.org),
+is available at CPAN (Comprehensive Perl Archive Network) sites,
+including:
+.IP
+http://search.cpan.org/~pmqs/IO-Compress-Zlib/
+.LP
+A Python interface to
+.IR zlib ,
+written by A.M. Kuchling (amk@magnet.com),
+is available in Python 1.5 and later versions:
+.IP
+http://docs.python.org/library/zlib.html
+.LP
+.I zlib
+is built into
+.IR tcl:
+.IP
+http://wiki.tcl.tk/4610
+.LP
+An experimental package to read and write files in .zip format,
+written on top of
+.I zlib
+by Gilles Vollant (info@winimage.com),
+is available at:
+.IP
+http://www.winimage.com/zLibDll/minizip.html
+and also in the
+.I contrib/minizip
+directory of the main
+.I zlib
+source distribution.
+.SH "SEE ALSO"
+The
+.I zlib
+web site can be found at:
+.IP
+http://zlib.net/
+.LP
+The data format used by the zlib library is described by RFC
+(Request for Comments) 1950 to 1952 in the files:
+.IP
+http://tools.ietf.org/html/rfc1950 (for the zlib header and trailer format)
+.br
+http://tools.ietf.org/html/rfc1951 (for the deflate compressed data format)
+.br
+http://tools.ietf.org/html/rfc1952 (for the gzip header and trailer format)
+.LP
+Mark Nelson wrote an article about
+.I zlib
+for the Jan. 1997 issue of Dr. Dobb's Journal;
+a copy of the article is available at:
+.IP
+http://marknelson.us/1997/01/01/zlib-engine/
+.SH "REPORTING PROBLEMS"
+Before reporting a problem,
+please check the
+.I zlib
+web site to verify that you have the latest version of
+.IR zlib ;
+otherwise,
+obtain the latest version and see if the problem still exists.
+Please read the
+.I zlib
+FAQ at:
+.IP
+http://zlib.net/zlib_faq.html
+.LP
+before asking for help.
+Send questions and/or comments to zlib@gzip.org,
+or (for the Windows DLL version) to Gilles Vollant (info@winimage.com).
+.SH AUTHORS
+Version 1.2.8
+Copyright (C) 1995-2013 Jean-loup Gailly (jloup@gzip.org)
+and Mark Adler (madler@alumni.caltech.edu).
+.LP
+This software is provided "as-is,"
+without any express or implied warranty.
+In no event will the authors be held liable for any damages
+arising from the use of this software.
+See the distribution directory with respect to requirements
+governing redistribution.
+The deflate format used by
+.I zlib
+was defined by Phil Katz.
+The deflate and
+.I zlib
+specifications were written by L. Peter Deutsch.
+Thanks to all the people who reported problems and suggested various
+improvements in
+.IR zlib ;
+who are too numerous to cite here.
+.LP
+UNIX manual page by R. P. C. Rodgers,
+U.S. National Library of Medicine (rodgers@nlm.nih.gov).
+.\" end of man page
diff --git a/privatemodules/null b/privatemodules/null
new file mode 100644
index 0000000000000000000000000000000000000000..892eb49719b9f0a176e75befb4a19dc56481077d
--- /dev/null
+++ b/privatemodules/null
@@ -0,0 +1,19 @@
+#%Module########################################################################
+##
+## null modulefile
+##
+proc ModulesHelp { } {
+ global version
+
+ puts stderr " This module does absolutely nothing."
+ puts stderr " It's meant simply as a place holder in your"
+ puts stderr " dot file initialization."
+ puts stderr "
+ Version $version
+"
+}
+
+module-whatis "does absolutely nothing"
+
+# for Tcl script use only
+set version 3.2.10
diff --git a/privatemodules/python/wp b/privatemodules/python/wp
new file mode 100644
index 0000000000000000000000000000000000000000..a6d8c8a98ca072762a9ecab66b18386ecbf7c6b9
--- /dev/null
+++ b/privatemodules/python/wp
@@ -0,0 +1,17 @@
+#%Module######################################
+# note that this is read by a Tcl interpretor
+#
+proc ModulesHelp { } {
+}
+
+module-whatis "loads the environment for python2.7"
+
+set pyver 2.7.5
+
+# These two conflict because MacPorts makes gcc libraries available for dynamic linking
+
+module load python/$pyver
+conflict python/2.7.8
+
+set-alias "ipy" "ipython --pylab"
+
diff --git a/privatemodules/tm5/mpi b/privatemodules/tm5/mpi
new file mode 100644
index 0000000000000000000000000000000000000000..eff9b2865a44ed257395e03477e1c93ebec6adbe
--- /dev/null
+++ b/privatemodules/tm5/mpi
@@ -0,0 +1,54 @@
+#%Module######################################
+# note that this is read by a Tcl interpretor
+#
+
+module-whatis "loads the Intel Compiler + MPI environment for use with TM5 parallel"
+
+set iccver [module-info version icc]
+set ifortver [module-info version ifort]
+
+set mod_intel fortran/intel/14.0.2
+set mod_hdf4 hdf4/intel/4.2.9
+set mod_szip szip/intel
+set mod_hdf5 hdf5/serial/intel/1.8.10-patch1
+set mod_cdf netcdf/impi/intel/4.1.3
+set mod_cdff netcdf-fortran/serial/intel
+set mod_hdf5_par hdf5/impi/intel/1.8.9
+#set mod_cdf_par netcdf-c/impi/intel/4.3.1.1
+#set mod_cdff_par netcdf-fortran/impi/intel
+setenv SURFSARA_NETCDFC_ROOT /hpc/sw/netcdf-4.1.3-intel-impi-par/
+setenv SURFSARA_NETCDFC_INCLUDE /hpc/sw/netcdf-4.1.3-intel-impi-par/include/
+setenv SURFSARA_NETCDFC_LIB /hpc/sw/netcdf-4.1.3-intel-impi-par/lib/
+setenv SURFSARA_NETCDFF_ROOT /hpc/sw/netcdf-4.1.3-intel-impi-par/
+setenv SURFSARA_NETCDFF_INCLUDE /hpc/sw/netcdf-4.1.3-intel-impi-par/include/
+setenv SURFSARA_NETCDFF_LIB /hpc/sw/netcdf-4.1.3-intel-impi-par/lib/
+
+if { [ expr [module-info mode load] || [module-info mode display] || [module-info mode switch] ] } {
+ module load $mod_intel
+ module load $mod_hdf4
+
+ if [ is-loaded $mod_cdf ] {
+ module unload $mod_cdf
+}
+
+ if [ is-loaded $mod_hdf5 ] {
+ module unload $mod_hdf5
+}
+
+module load $mod_szip
+module load $mod_hdf5_par
+#module load $mod_cdff_par
+#module load $mod_cdf_par
+setenv UDUNITS_PATH /home/ivdvelde/local/udunits/etc/udunits.dat
+prepend-path PATH /home/ivdvelde/local
+
+}
+
+if [ module-info mode remove ] {
+ module del $mod_intel
+ module del $mod_hdf4
+ module del $mod_szip
+ module del $mod_hdf5_par
+ #module del $mod_cdf_par
+ #module del $mod_cdff_par
+}
diff --git a/privatemodules/tm5/serial b/privatemodules/tm5/serial
new file mode 100644
index 0000000000000000000000000000000000000000..c57e98483abd80dd881404c63b37656fcbbeb341
--- /dev/null
+++ b/privatemodules/tm5/serial
@@ -0,0 +1,49 @@
+#%Module######################################
+# note that this is read by a Tcl interpretor
+#
+
+module-whatis "loads the Intel Compiler environment for use with TM5 in serial mode"
+
+set iccver [module-info version icc]
+set ifortver [module-info version ifort]
+
+set mod_intel fortran/intel/14.0.2
+set mod_hdf4 hdf4/intel/4.2.9
+set mod_szip szip/intel
+#set mod_hdf5 hdf5/serial/intel
+set mod_hdf5 hdf5/serial/intel/1.8.10-patch1
+set mod_cdf netcdf/serial/intel/4.1.3
+set mod_cdff netcdf-fortran/serial/intel
+#set mod_hdf5_par hdf5/impi/intel
+set mod_hdf5_par hdf5/impi/intel/1.8.10-patch1
+set mod_cdf_par netcdf/impi/intel
+
+if { [ expr [module-info mode load] || [module-info mode display] || [module-info mode switch] ] } {
+ module load $mod_intel
+ module load $mod_hdf4
+ if [ is-loaded $mod_cdf_par ] {
+ module unload $mod_cdf_par
+}
+
+ if [ is-loaded $mod_hdf5_par ] {
+ module unload $mod_hdf5_par
+}
+ module unload python
+ module load $mod_szip
+ module load $mod_hdf5
+ module load $mod_cdf
+ module load $mod_cdff
+ module load python/wp
+ setenv UDUNITS_PATH /home/ivdvelde/local/udunits/etc/udunits.dat
+ prepend-path PATH /home/ivdvelde/local
+}
+
+if [ module-info mode remove ] {
+ module del $mod_intel
+ module del $mod_cdf
+ module del $mod_cdff
+ module del $mod_hdf4
+ module del $mod_szip
+ module del $mod_hdf5
+ module del python/wp
+}
diff --git a/sib4v2 b/sib4v2
new file mode 160000
index 0000000000000000000000000000000000000000..ecdb7f22918de1252ae129e454781371110b9ac1
--- /dev/null
+++ b/sib4v2
@@ -0,0 +1 @@
+Subproject commit ecdb7f22918de1252ae129e454781371110b9ac1