diff --git a/notebooks/samsa2-prepare.ipynb b/notebooks/samsa2-prepare.ipynb index f6f2188799a63fb722cd85f5328b0dd51ef55222..a58ec621d9b39e5f510e943f67baaf4a7fa33ec4 100644 --- a/notebooks/samsa2-prepare.ipynb +++ b/notebooks/samsa2-prepare.ipynb @@ -1,34 +1,9 @@ { "cells": [ - { - "cell_type": "markdown", - "id": "seven-dairy", - "metadata": {}, - "source": [ - "# Retrieve SAMSA2 Output Files" - ] - }, - { - "cell_type": "code", - "execution_count": 20, - "id": "lasting-asset", - "metadata": {}, - "outputs": [], - "source": [ - "# Dependencies\n", - "import os\n", - "import logging\n", - "from irods.models import DataObject, DataObjectMeta, Collection, CollectionMeta\n", - "from irods.column import Criterion\n", - "import getpass\n", - "from shutil import copyfileobj\n", - "import pathlib\n" - ] - }, { "cell_type": "code", "execution_count": 21, - "id": "private-proposal", + "id": "unique-creek", "metadata": {}, "outputs": [], "source": [ @@ -47,7 +22,7 @@ { "cell_type": "code", "execution_count": null, - "id": "informal-albert", + "id": "shaped-perry", "metadata": {}, "outputs": [], "source": [ @@ -56,25 +31,10 @@ }, { "cell_type": "code", - "execution_count": 3, - "id": "pacific-peter", + "execution_count": null, + "id": "formed-parliament", "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Username\n" - ] - }, - { - "name": "stdin", - "output_type": "stream", - "text": [ - " nijsse\n" - ] - } - ], + "outputs": [], "source": [ "print(\"Username\")\n", "username=input()" @@ -82,25 +42,10 @@ }, { "cell_type": "code", - "execution_count": 4, - "id": "minus-stuff", + "execution_count": null, + "id": "turkish-probe", "metadata": {}, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Password\n" - ] - }, - { - "name": "stdin", - "output_type": "stream", - "text": [ - " ············\n" - ] - } - ], + "outputs": [], "source": [ "print(\"Password\")\n", "password = getpass.getpass()" @@ -109,7 +54,7 @@ { "cell_type": "code", "execution_count": 22, - "id": "functioning-climb", + "id": "standing-shannon", "metadata": {}, "outputs": [], "source": [ @@ -142,15 +87,15 @@ { "cell_type": "code", "execution_count": 23, - "id": "tested-detector", + "id": "analyzed-wheat", "metadata": {}, "outputs": [], "source": [ "# Set the study\n", "\n", - "project = \"P_Deltares\"\n", - "investigation = \"I_vitens\"\n", - "study = \"S_ground_surface_water\"\n", + "project = \"P_UNLOCK\"\n", + "investigation = \"I_INVESTIGATION_TEST\"\n", + "study = \"S_TEST_STUDY\"\n", "\n", "studyPath = \"/unlock/projects/\"+project+\"/\"+investigation+\"/\"+study" ] @@ -158,7 +103,7 @@ { "cell_type": "code", "execution_count": 42, - "id": "excessive-injury", + "id": "overall-possibility", "metadata": {}, "outputs": [ {