Commit 70d826b0 authored by martijnlandman's avatar martijnlandman
Browse files

NCBI bioprojects RUNSET

parent 23706450
Pipeline #38014 failed with stage
in 1 minute and 25 seconds
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class BASECALL {
@JsonProperty("match_edge")
public String getMatch_edge() {
return this.match_edge; }
public void setMatch_edge(String match_edge) {
this.match_edge = match_edge; }
String match_edge;
@JsonProperty("content")
public String getContent() {
return this.content; }
public void setContent(String content) {
this.content = content; }
String content;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class EXPECTEDBASECALLTABLE {
@JsonProperty("BASECALL")
public BASECALL getBASECALL() {
return this.bASECALL; }
public void setBASECALL(BASECALL bASECALL) {
this.bASECALL = bASECALL; }
BASECALL bASECALL;
}
......@@ -21,12 +21,15 @@ public class EXPERIMENT{
public void setCenter_name(String center_name) {
this.center_name = center_name; }
String center_name;
@JsonProperty("PROCESSING")
public String getPROCESSING() {
return this.pROCESSING; }
public void setPROCESSING(String pROCESSING) {
this.pROCESSING = pROCESSING; }
String pROCESSING;
//String or Object needed
@JsonProperty("PROCESSING")
public Object getPROCESSING() {
return this.pROCESSING; }
public void setPROCESSING(Object pROCESSING) {
this.pROCESSING = pROCESSING; }
Object pROCESSING;
@JsonProperty("alias")
public String getAlias() {
return this.alias; }
......@@ -57,4 +60,10 @@ public class EXPERIMENT{
public void setSTUDY_REF(STUDYREF sTUDY_REF) {
this.sTUDY_REF = sTUDY_REF; }
STUDYREF sTUDY_REF;
@JsonProperty("EXPERIMENT_LINKS")
public EXPERIMENTLINKS getEXPERIMENT_LINKS() {
return this.eXPERIMENT_LINKS; }
public void setEXPERIMENT_LINKS(EXPERIMENTLINKS eXPERIMENT_LINKS) {
this.eXPERIMENT_LINKS = eXPERIMENT_LINKS; }
EXPERIMENTLINKS eXPERIMENT_LINKS;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class EXPERIMENTLINK {
@JsonProperty("URL_LINK")
public URLLINK getURL_LINK() {
return this.uRL_LINK; }
public void setURL_LINK(URLLINK uRL_LINK) {
this.uRL_LINK = uRL_LINK; }
URLLINK uRL_LINK;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class EXPERIMENTLINKS {
@JsonProperty("EXPERIMENT_LINK")
public EXPERIMENTLINK getEXPERIMENT_LINK() {
return this.eXPERIMENT_LINK; }
public void setEXPERIMENT_LINK(EXPERIMENTLINK eXPERIMENT_LINK) {
this.eXPERIMENT_LINK = eXPERIMENT_LINK; }
EXPERIMENTLINK eXPERIMENT_LINK;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class PIPELINE {
@JsonProperty("PIPE_SECTION")
public PIPESECTION getPIPE_SECTION() {
return this.pIPE_SECTION; }
public void setPIPE_SECTION(PIPESECTION pIPE_SECTION) {
this.pIPE_SECTION = pIPE_SECTION; }
PIPESECTION pIPE_SECTION;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class PIPESECTION {
@JsonProperty("STEP_INDEX")
public int getSTEP_INDEX() {
return this.sTEP_INDEX; }
public void setSTEP_INDEX(int sTEP_INDEX) {
this.sTEP_INDEX = sTEP_INDEX; }
int sTEP_INDEX;
@JsonProperty("VERSION")
public String getVERSION() {
return this.vERSION; }
public void setVERSION(String vERSION) {
this.vERSION = vERSION; }
String vERSION;
@JsonProperty("PREV_STEP_INDEX")
public String getPREV_STEP_INDEX() {
return this.pREV_STEP_INDEX; }
public void setPREV_STEP_INDEX(String pREV_STEP_INDEX) {
this.pREV_STEP_INDEX = pREV_STEP_INDEX; }
String pREV_STEP_INDEX;
@JsonProperty("PROGRAM")
public String getPROGRAM() {
return this.pROGRAM; }
public void setPROGRAM(String pROGRAM) {
this.pROGRAM = pROGRAM; }
String pROGRAM;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class PROCESSING {
@JsonProperty("PIPELINE")
public PIPELINE getPIPELINE() {
return this.pIPELINE; }
public void setPIPELINE(PIPELINE pIPELINE) {
this.pIPELINE = pIPELINE; }
PIPELINE pIPELINE;
}
......@@ -27,4 +27,16 @@ public class READSPEC{
public void setREAD_TYPE(String rEAD_TYPE) {
this.rEAD_TYPE = rEAD_TYPE; }
String rEAD_TYPE;
@JsonProperty("EXPECTED_BASECALL_TABLE")
public EXPECTEDBASECALLTABLE getEXPECTED_BASECALL_TABLE() {
return this.eXPECTED_BASECALL_TABLE; }
public void setEXPECTED_BASECALL_TABLE(EXPECTEDBASECALLTABLE eXPECTED_BASECALL_TABLE) {
this.eXPECTED_BASECALL_TABLE = eXPECTED_BASECALL_TABLE; }
EXPECTEDBASECALLTABLE eXPECTED_BASECALL_TABLE;
@JsonProperty("RELATIVE_ORDER")
public RELATIVEORDER getRELATIVE_ORDER() {
return this.rELATIVE_ORDER; }
public void setRELATIVE_ORDER(RELATIVEORDER rELATIVE_ORDER) {
this.rELATIVE_ORDER = rELATIVE_ORDER; }
RELATIVEORDER rELATIVE_ORDER;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class RELATIVEORDER {
@JsonProperty("follows_read_index")
public int getFollows_read_index() {
return this.follows_read_index; }
public void setFollows_read_index(int follows_read_index) {
this.follows_read_index = follows_read_index; }
int follows_read_index;
}
......@@ -137,6 +137,13 @@ public class RUN {
Bases bases;
@JsonProperty("xmlns")
public String getXmlns() {
return this.xmlns; }
public void setXmlns(String xmlns) {
this.xmlns = xmlns; }
String xmlns;
@JsonProperty("center_name")
public String getCenter_name() {
return this.center_name;
......
......@@ -15,4 +15,10 @@ public class RUNATTRIBUTE{
public void setVALUE(String vALUE) {
this.vALUE = vALUE; }
String vALUE;
@JsonProperty("UNITS")
public String getUNITS() {
return this.uNITS; }
public void setUNITS(String uNITS) {
this.uNITS = uNITS; }
String uNITS;
}
package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonCreator;
import com.fasterxml.jackson.annotation.JsonProperty;
public class RUNSET{
@JsonProperty("RUN")
public RUN getRUN() {
return this.rUN; }
public void setRUN(RUN rUN) {
this.rUN = rUN; }
return this.rUN; }
public void setRUN(RUN rUN) {
this.rUN = rUN; }
RUN rUN;
}
}
......@@ -3,91 +3,66 @@ package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
public class SAMPLE {
@JsonProperty("center_name")
public String getCenter_name() {
return this.center_name; }
public void setCenter_name(String center_name) {
this.center_name = center_name; }
String center_name;
@JsonProperty("SAMPLE_NAME")
public SAMPLENAME getSAMPLE_NAME() {
return this.sAMPLE_NAME;
}
return this.sAMPLE_NAME; }
public void setSAMPLE_NAME(SAMPLENAME sAMPLE_NAME) {
this.sAMPLE_NAME = sAMPLE_NAME;
}
this.sAMPLE_NAME = sAMPLE_NAME; }
SAMPLENAME sAMPLE_NAME;
@JsonProperty("alias")
public String getAlias() {
return this.alias;
}
return this.alias; }
public void setAlias(String alias) {
this.alias = alias;
}
this.alias = alias; }
String alias;
@JsonProperty("IDENTIFIERS")
public IDENTIFIERS getIDENTIFIERS() {
return this.iDENTIFIERS;
}
return this.iDENTIFIERS; }
public void setIDENTIFIERS(IDENTIFIERS iDENTIFIERS) {
this.iDENTIFIERS = iDENTIFIERS;
}
this.iDENTIFIERS = iDENTIFIERS; }
IDENTIFIERS iDENTIFIERS;
@JsonProperty("accession")
public String getAccession() {
return this.accession;
}
return this.accession; }
public void setAccession(String accession) {
this.accession = accession;
}
this.accession = accession; }
String accession;
@JsonProperty("SAMPLE_ATTRIBUTES")
public SAMPLEATTRIBUTES getSAMPLE_ATTRIBUTES() {
return this.sAMPLE_ATTRIBUTES;
}
return this.sAMPLE_ATTRIBUTES; }
public void setSAMPLE_ATTRIBUTES(SAMPLEATTRIBUTES sAMPLE_ATTRIBUTES) {
this.sAMPLE_ATTRIBUTES = sAMPLE_ATTRIBUTES;
}
this.sAMPLE_ATTRIBUTES = sAMPLE_ATTRIBUTES; }
SAMPLEATTRIBUTES sAMPLE_ATTRIBUTES;
@JsonProperty("SAMPLE_LINKS")
public SAMPLELINKS getSAMPLE_LINKS() {
return this.sAMPLE_LINKS;
}
return this.sAMPLE_LINKS; }
public void setSAMPLE_LINKS(SAMPLELINKS sAMPLE_LINKS) {
this.sAMPLE_LINKS = sAMPLE_LINKS;
}
this.sAMPLE_LINKS = sAMPLE_LINKS; }
SAMPLELINKS sAMPLE_LINKS;
@JsonProperty("TITLE")
public String getTITLE() {
return this.tITLE;
}
return this.tITLE; }
public void setTITLE(String tITLE) {
this.tITLE = tITLE;
}
this.tITLE = tITLE; }
String tITLE;
@JsonProperty("DESCRIPTION")
public String getDESCRIPTION() {
return this.dESCRIPTION;
}
return this.dESCRIPTION; }
public void setDESCRIPTION(String dESCRIPTION) {
this.dESCRIPTION = dESCRIPTION;
}
this.dESCRIPTION = dESCRIPTION; }
String dESCRIPTION;
}
......@@ -9,4 +9,10 @@ public class SAMPLELINK{
public void setXREF_LINK(XREFLINK xREF_LINK) {
this.xREF_LINK = xREF_LINK; }
XREFLINK xREF_LINK;
@JsonProperty("URL_LINK")
public URLLINK getURL_LINK() {
return this.uRL_LINK; }
public void setURL_LINK(URLLINK uRL_LINK) {
this.uRL_LINK = uRL_LINK; }
URLLINK uRL_LINK;
}
......@@ -2,13 +2,27 @@ package nl.fairbydesign.backend.ncbi.objects.esample;
import com.fasterxml.jackson.annotation.JsonProperty;
import java.util.Date;
public class SUBMISSION{
@JsonProperty("submission_date")
public Date getSubmission_date() {
return this.submission_date; }
public void setSubmission_date(Date submission_date) {
this.submission_date = submission_date; }
Date submission_date;
@JsonProperty("center_name")
public String getCenter_name() {
return this.center_name; }
public void setCenter_name(String center_name) {
this.center_name = center_name; }
String center_name;
@JsonProperty("broker_name")
public String getBroker_name() {
return this.broker_name; }
public void setBroker_name(String broker_name) {
this.broker_name = broker_name; }
String broker_name;
@JsonProperty("alias")
public String getAlias() {
return this.alias; }
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment