From 2adca259fa6fc9f00a95f957fe4c34d4a349de44 Mon Sep 17 00:00:00 2001 From: "Nijsse, Bart" <bart.nijsse@wur.nl> Date: Mon, 22 Feb 2021 13:09:36 +0100 Subject: [PATCH] Update docs/Metadata/Procedure.md --- docs/Metadata/Procedure.md | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/docs/Metadata/Procedure.md b/docs/Metadata/Procedure.md index d67a773..57968c3 100644 --- a/docs/Metadata/Procedure.md +++ b/docs/Metadata/Procedure.md @@ -10,9 +10,9 @@ To get access to the **UNLOCK E-Infrastructure** users are asked to provide info This information will initially be captured off-line using a **specific preformatted Excel sheet**. This excel is empty except for Project level meta-data and a number of the predefined **Headers** for data specific meta-data. These headers should not be changed as they are part of the UNLOCK infrastructure ontology. -As not every project is the same requiring the same headers we made a Metadata Registration Web-Form that will generate the Excel template for specific Project, envisioned experiments and generated data. Project related information (metadata) should be entered iin this web-form. This includes: Project information, research questions, experimental setup and how the the data is or will be generated. Users are encouraged to capture as much information (metadata) as possible. +As not every project, we made a Metadata Registration Web-Form that will generate the Excel template for specific Project/investigation, envisioned experiments and generated data. Project related information (metadata) should be entered in this web-form. This includes: Project information, research questions, experimental setup and how the the data is or will be generated. Users are encouraged to capture as much information (metadata) as possible. -After Web-form completion users download their custom **project specific template Excel sheet** and start registering specific meta-data of their samples and assays. The filled in Excel sheet is subsequently uploaded to the Unlock website and automatically checked for common mistakes and followed by a final manual check by the data stewrd after which following the ISA-tab structure the data-related Project specific meta-data is automatically extracted and used to set up the data/meta-data folder structure +After Web-form completion users download their custom **project specific template Excel sheet** and start registering specific meta-data of their samples and assays. The filled in Excel sheet is subsequently uploaded to the Unlock website and automatically checked for common mistakes and followed by a final manual check by the data steward. After which following the Unlock structure and the data-related project specific meta-data is automatically extracted and used to set up the data/meta-data folder structure <br/><br/> ##### **The Unlock Project data management structure** @@ -28,13 +28,12 @@ More information about the **Unlock Ontology** see [Ontology page](../../Ontolog ### **Submitting metadata and (raw) assay data** - -Submittiion of generated (raw) assay data such as sequencing data in this environment can be done via multiple ways and will be discussed with the data steward. +Submittion of generated (raw) assay data such as sequencing data in this environment can be done via multiple ways and will be discussed with the data steward. <br /><br /> ### **Getting access to the infrastructure and your data** -under Project, users are asked to add other persons involved. Each listed person will get an account with have **read only access** to the files and (meta)data generated within the project and investigation. +For each project and it's investigations users are asked who is involved in the project/investigation and who needs access to the data. For each given person who requires access to the data will get an account with **read only access** to the files and (meta)data generated within the project its investigation(s). The data and metadata will be stored in a secure iRODS instance and can be accessed via different ways (e.g. file explorer and web browser and ). See [iRODS](../../iRODS/irods/) for more information and [Tutorials](../../Tutorials/Tutorials) (under development) -- GitLab