Commits · master · UNLOCK / docker

22 Sep, 2021 1 commit
- removed - from tar command due to issues with f vs -f · 21ab1712
  Jasper Koehorst authored Sep 22, 2021
  
  21ab1712
16 Sep, 2021 3 commits
- provenance tarring path fixed · 64e83dd6
  Nijsse, Bart authored Sep 16, 2021
  
  64e83dd6
- Merge branch 'master' of git.wur.nl:unlock/docker · aefc5bd3
  Nijsse, Bart authored Sep 16, 2021
  
  aefc5bd3
- cwl provenance ttl fix · 75c4e207
  Nijsse, Bart authored Sep 16, 2021
  
  75c4e207
02 Sep, 2021 3 commits
- docker update · 678428a1
  Jasper Koehorst authored Sep 02, 2021
  
  678428a1
- import rdflib test · 0cad1841
  Jasper Koehorst authored Sep 02, 2021
  
  0cad1841
- dockerfile replaced and formatting fixes · da79312d
  Jasper Koehorst authored Sep 02, 2021
  
  da79312d
01 Sep, 2021 3 commits
- build improvements and conda deactivation added · a2ed31da
  Jasper Koehorst authored Sep 01, 2021
  
  a2ed31da
- Merge branch 'master' of https://git.wur.nl/unlock/docker · b5abb1b7
  Jasper Koehorst authored Sep 01, 2021
  
  b5abb1b7
- docker build file cleaning and run.sh upgrade for provenance compression · e7a7aa2f
  Jasper Koehorst authored Sep 01, 2021
  
  e7a7aa2f
31 Aug, 2021 1 commit
- added HUMAnN meta-omics tools · 07d084e3
  Nijsse, Bart authored Aug 31, 2021
  
  07d084e3
30 Aug, 2021 3 commits
- ignore update for graph database binaries · 0ba677aa
  Jasper Koehorst authored Aug 30, 2021
  
  0ba677aa
- issue with - in folder path · 59e26cc5
  Jasper Koehorst authored Aug 30, 2021
  
  59e26cc5
- biom format added as pip install · 36e0417a
  Jasper Koehorst authored Aug 30, 2021
  
  36e0417a
25 Aug, 2021 11 commits
- typo in docker build line · 39c45b74
  Jasper Koehorst authored Aug 25, 2021
  
  39c45b74
- test with requirements · 6b68e7b9
  Jasper Koehorst authored Aug 25, 2021
  
  6b68e7b9
- merge pip installs · 36078d1b
  Jasper Koehorst authored Aug 25, 2021
  
  36078d1b
- rdf hdt fixed · 4a7e9692
  Jasper Koehorst authored Aug 25, 2021
  
  4a7e9692
- rdflib-hdt added as dependency · 97ce5bd0
  Jasper Koehorst authored Aug 25, 2021
  
  97ce5bd0
- gcc added and simplified building · 27c225f5
  Jasper Koehorst authored Aug 25, 2021
  
  27c225f5
- pandas added · abf5a2db
  Jasper Koehorst authored Aug 25, 2021
  
  abf5a2db
- graphdb version bump · 9c230da8
  Jasper Koehorst authored Aug 25, 2021
  
  9c230da8
- changed docker push location · 27c1f747
  Jasper Koehorst authored Aug 25, 2021
  
  27c1f747
- removed genome properties from build · b387a1de
  Jasper Koehorst authored Aug 25, 2021
  
  b387a1de
- folders created for sub groups of kubernetes docker for exeuction and docker for notebooks · 216a8142
  Jasper Koehorst authored Aug 25, 2021
  
  216a8142
18 Aug, 2021 1 commit
- fixed wrong variable name called.. · c365e758
  Nijsse, Bart authored Aug 18, 2021
  
  c365e758
17 Aug, 2021 2 commits
- Merge branch 'master' of https://git.wur.nl/unlock/docker · e0b0d8ab
  Jasper Koehorst authored Aug 17, 2021
```
# Conflicts:
#	Dockerfile
```
  e0b0d8ab
- ensure root /scripts to be used · 3beb0268
  Jasper Koehorst authored Aug 17, 2021
  
  3beb0268
23 Jul, 2021 2 commits
- needed for ngtax2_to_picrust2.py conversion run · 59558626
  Nijsse, Bart authored Jul 23, 2021
  
  59558626
- picrust2 conda env extensions · ba57aedf
  Nijsse, Bart authored Jul 23, 2021
  
  ba57aedf
21 Jul, 2021 1 commit
- activate specific conda env when present in yaml file · 790dba35
  Nijsse, Bart authored Jul 21, 2021
  
  790dba35
20 Jul, 2021 4 commits
- Merge branch 'master' of https://git.wur.nl/unlock/docker · 83284963
  Jasper Koehorst authored Jul 20, 2021
  
  83284963
- ncbi toolkit in progress · 61857721
  Jasper Koehorst authored Jul 20, 2021
  
  61857721
- SDKMAN path added · bbc5a9c7
  Jasper Koehorst authored Jul 20, 2021
  
  bbc5a9c7
- added miniconda and conda picrust2 · 07b7a2e4
  Nijsse, Bart authored Jul 20, 2021
  
  07b7a2e4
17 Jun, 2021 1 commit
- version bump and run cwltool update · ef00a80a
  Jasper Koehorst authored Jun 17, 2021
  
  ef00a80a
28 May, 2021 2 commits
- changed ADD to COPY · 41c8de6a
  Nijsse, Bart authored May 28, 2021
  
  41c8de6a
- cleanup and added gtdbtk · b9de66b0
  Nijsse, Bart authored May 28, 2021
  
  b9de66b0
25 May, 2021 1 commit
- CheckM tool added · 830a04a9
  Nijsse, Bart authored May 25, 2021
  
  830a04a9
12 May, 2021 1 commit
- upload script added · 5ee54f1d
  Koehorst, Jasper authored May 12, 2021
  
  5ee54f1d