Commit bbc5a9c7 authored by Jasper Koehorst's avatar Jasper Koehorst
Browse files

SDKMAN path added

parent ef00a80a
......@@ -71,10 +71,11 @@ ENV GTDBTK_DATA_PATH=/unlock/references/databases/GTDBTK/release202/
RUN sudo ln -s /usr/lib/x86_64-linux-gnu/libpng16.so.16.34.0 /usr/lib/x86_64-linux-gnu/libpng12.so.0
## SET PATH ##
ENV SDKMAN=/root/.sdkman/candidates/maven/current/bin:/root/.sdkman/candidates/java/current/bin:/root/.sdkman/candidates/gradle/current/bin
ENV CHECKM=/unlock/infrastructure/binaries/hmmer/hmmer-3.3.2/bin:/unlock/infrastructure/binaries/pplacer/pplacer-Linux-v1.1.alpha17/bin:/unlock/infrastructure/binaries/prodigal/v2.6.3
# note: CheckM and GTDB-Tk overlap with hmmer,prodigal and are not added to GTDBTK
ENV GTDBTK=/unlock/infrastructure/binaries/Mash/mash-Linux64-v2.3:/unlock/infrastructure/binaries/FastTree/FastTree_v2.1.11:/unlock/infrastructure/binaries/Mash/mash-Linux64-v2.3:/unlock/infrastructure/binaries/fastANI/fastANI_v1.33
ENV PATH=$PATH:$CHECKM:$GTDBTK
ENV PATH=$PATH:$SDKMAN:$CHECKM:$GTDBTK
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