Commit 07b7a2e4 authored by Nijsse, Bart's avatar Nijsse, Bart
Browse files

added miniconda and conda picrust2

parent ef00a80a
......@@ -51,6 +51,11 @@ RUN apt-get update && apt-get install -y software-properties-common && \
apt update && \
apt install -y r-base
# Miniconda
RUN apt-get update && apt-get install -y python3.8 && \
wget -q https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash /Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda
######################################
####### ANALYSIS TOOLS SECTION #######
......@@ -67,6 +72,12 @@ RUN pip3 install pysam numpy matplotlib checkm-genome && \
RUN python3 -m pip install gtdbtk
ENV GTDBTK_DATA_PATH=/unlock/references/databases/GTDBTK/release202/
## picrust2 (conda)
RUN source /root/miniconda/bin/activate && \
conda create -n picrust2 -c bioconda -c conda-forge picrust2=2.4.1 && \
conda deactivate
## Needed for faTools
RUN sudo ln -s /usr/lib/x86_64-linux-gnu/libpng16.so.16.34.0 /usr/lib/x86_64-linux-gnu/libpng12.so.0
......
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