diff --git a/cwl/workflows/workflow_nanopore_assembly.cwl b/cwl/workflows/workflow_nanopore_assembly.cwl index d0fb1268567e93e06930602c61c308b0f656befc..e7b708c57b9deab6bf5f74ee70b09c87b0848b81 100644 --- a/cwl/workflows/workflow_nanopore_assembly.cwl +++ b/cwl/workflows/workflow_nanopore_assembly.cwl @@ -343,7 +343,7 @@ steps: threads: threads step: default: 1 - out: [metabat2_output,checkm_output,gtdbtk_output,busco_output] + out: [metabat2_output, checkm_output, gtdbtk_output, busco_output, bins_summary] ############################################# #### Move to folder if not part of a workflow @@ -486,6 +486,10 @@ steps: run: ../expressions/files_to_folder.cwl in: binning: binning + files: + source: [workflow_binning/bins_summary] + linkMerge: merge_flattened + pickValue: all_non_null folders: source: [workflow_binning/metabat2_output, workflow_binning/checkm_output, workflow_binning/gtdbtk_output, workflow_binning/busco_output] linkMerge: merge_flattened