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BC sensitivity with 4 parameters

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da/stilt/stilt.BC.footprint.year.v2.1.4bcs.normalize.r 0 → 100755
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#------------------------------------------------------------------------------------------------
# Calculation for BC sensitivity for CarbonTracker-Lagrange
# including general case (lat/lon/alt/time) and normalized case, which is a try for solving
# the problem of relative small values
# created by W.He on Feb 20, 2015
#------------------------------------------------------------------------------------------------
source("/Users/wei/co2simu/Rcode/lpdm/rsource/load.ncdf4.r")
source("/Users/wei/co2simu/Rcode/empirical_boundary/src/id2info.r")
source("/Users/wei/co2simu/Rcode/empirical_boundary/src/julian.r")
source("/Users/wei/co2simu/Rcode/rsource/time.r")
source("/Users/wei/co2simu/Rcode/rsource/ddate.r")
source("/Users/wei/co2simu/Rcode/rsource/datelist.r")
source("/Users/wei/co2simu/Rcode/stilt-cvs-20090417/stiltR/sourceall.r")
source("/Users/wei/co2simu/Rcode/stilt-cvs-20090417/stiltR/Trajecfoot.r")
source("/Users/wei/co2simu/Rcode/stilt-cvs-20090417/stiltR/getgridp.r")
source("/Users/wei/co2simu/Rcode/rsource/assignr.r")
# constants for level-height transfrom
levelhgt=c(34.5,111.9,256.9,490.4,826.4,1274.1,1839.0,2524.0,3329.9,4255.6,5298.5,6453.8,7715.4,9076.6,
+ 10533.3,12108.3,13874.2,15860.1,18093.2,20590.0,24247.3,29859.6,35695.0,42551.5,80000.0)
#data from http://www.esrl.noaa.gov/gmd/ccgg/carbontracker-ch4/documentation_tm5.html
library(ncdf4)
library(futile.logger)
logfile = "stilt_BC_footprint.log"
flog.appender(appender.file(logfile), name='logger.b')
flog.info("======Launch BC footprints calculations======", name='logger.b')
newfile=T
datadir="/Storage/ctdas-wrfstilt/new_stilt_footprints/flask/2010/"
eidfilebase="/Storage/ctdas-wrfstilt/stilt_footprints/receptor_info/receptor_info.2010-"
for(n in 1:12)
{
if(n<10)
mon=paste("0",n,sep="")
else
mon=n
pfbpath=paste(datadir,mon,"/",sep="")
pfbfns=list.files(pfbpath,pattern="nc", all=T)
for(mm in 1:length(pfbfns))
{
#--------------------------------------------
# STEP 1: Read footprints
#--------------------------------------------
fn=paste(pfbpath,pfbfns[mm],sep="")
footp=load.ncdf(fn)
# get info form path srings
ident=substring(pfbfns[mm],6,46)
eventid=substring(pfbfns[mm],48,53)
height=as.numeric(substring(pfbfns[mm],42,46))
print(ident)
flog.info(" %s",ident, name='logger.b')
#info=id2info(ident)
#print(info)
#if(length(foot)>100)
#{
inityr=as.numeric(substring(ident,1,4))
initmo=as.numeric(substring(ident,6,7))
initdy=as.numeric(substring(ident,9,10))
inithr=as.numeric(substring(ident,12,13))
initmi=as.numeric(substring(ident,15,16))
inihgt=as.numeric(substring(ident,39,41)) #bug, height 38,41
inihgt=as.numeric(substring(ident,37,41))
# get the time stamp for each foot step, going back time given by "endtime"
xx=ISOdatetime(inityr,initmo,initdy,inithr,initmi,0,tz="UTC")
# get endpoints
endpts=footp$endpts
endptna=footp$endptsnames
#endpts=ncvar_get(footnc,"endpts")
#endptna=ncvar_get(footnc,"endptsnames")
colnames(endpts)=endptna #=c("time","index","lat","lon","agl","grdht","temp","pres")
endptsdate=footp$endptsdate #2010-08-04 20:18:00 UTC
#endptsdate=ncvar_get(footnc,"endptsdate")
#diff = as.numeric(difftime(xx,endptsdate,units='hours'))
#flog.info("time difference = %s", diff, name='logger.b')
latarr=endpts[,3]
lonarr=endpts[,4]
hgtarr=endpts[,5] + endpts[,6] #agl+grdht
#The domain we want to consider is a box around North America, with boundaries at
#125W, 55W, 20N, 75N, and 3km altitude
num_in1=0
num_in2=0
num_in3=0
num_out1=0
num_out2=0
num_out3=0
t_weight1=0
counter_bc1=0
counter_bc2=0
counter_bc3=0
counter_bc4=0
for (i in 1:length(lonarr))
{
if (hgtarr[i]>3000)
{
counter_height = counter_height +1
if(latarr[i]<20 && lonarr[i]>= (-125) && lonarr[i] <= (-55))
counter_bc1 = counter_bc1 + 1
if(latarr[i]>75 && lonarr[i]>= (-125) && lonarr[i] <= (-55))
counter_bc2 = counter_bc2 + 1
if(lonarr[i]< (-125) && latarr[i] >= 20 && latarr[i] <= 75)
counter_bc3 = counter_bc3 + 1
if(lonarr[i]> (-55) && latarr[i] >= 20 && latarr[i] <= 75)
counter_bc4 = counter_bc4 + 1
}
if(latarr[i]<20 || latarr[i]>75 || lonarr[i]< -125 || lonarr[i]> -55) # && hgtarr[i]<=3000 )
{
if(hgtarr[i]>3000)
{
#print(c(latarr[i],lonarr[i],hgtarr[i]))
num_out3=num_out3+1
diff = as.numeric(difftime(xx,endptsdate[i],units='hours'))
flog.info("time difference = %s", diff, name='logger.b')
# linear
t_weight1 = t_weight1 + (1-diff/240)/500
}
}
if(height<500)
flag="T"
else
flag="A"
}
fnameout1=paste(pfbpath,"FP_BC_3km_time_spent_2.1.4bcs.prep01.norm.txt",sep="")
flog.info("Output to: ",fnameout1, name='logger.b')
outlist<-c(counter_bc1/500*t_weight1,counter_bc2/500*t_weight1,counter_bc3/500*t_weight1,counter_bc4/500*t_weight1)
out1<-c(ident,eventid,round(outlist,6),flag)
if(newfile)
write.table(t(out1), file=fnameout1, append=F, col.names=F, row.names=F, quote=F)
if(!newfile)
write.table(t(out1), file=fnameout1, append=T, col.names=F, row.names=F, quote=F)
newfile=F
#}# end if foot NA
}#end loop mm
# for every month, normalize
fnameout2=paste(pfbpath,"FP_BC_3km_time_spent_2.1.4bcs.prep02.norm.txt",sep="")
flog.info("Output to: ",fnameout2, name='logger.b')
footfile<-fnameout1
print(footfile)
footdata<-as.matrix(read.table(footfile,header=FALSE))
ident=footdata[,1]
evn1=footdata[,2]
bcf_1=footdata[,3]
bcf_2=footdata[,4]
bcf_3=footdata[,5]
bcf_4=footdata[,6]
d1=dim(footdata)
lin1=d1[1]
#sitenew=NULL
#airtowflag=NULL
# according to evn, find site name, and using these recorded infomation to normalize
eidfile<-paste(eidfilebase,mon,".txt",sep="")
eiddata<-as.matrix(read.table(eidfile,header=TRUE))
evn2=eiddata[,15]
site=eiddata[,11]
airtower=eiddata[,3]
d2=dim(eiddata)
lin2=d2[1]
#out2=NULL
newfile2=T
for (i in 1:lin1)
{
id1 = evn1[i]
sitenew=NULL
airtowflag=NULL
out2=NULL
for (j in 1:lin2)
{
id2 = evn2[j]
if(id1==id2)
{
sitenew=site[j]
airtowflag=airtower[j]
break
}
}
out2=c(ident[i],evn1[i],bcf_1[i],bcf_2[i],bcf_3[i],bcf_4[i],sitenew,airtowflag)
header=c("ident","eventid","bc1","bc2","bc3","bc4","site","type")
if(newfile2)
#write.table(t(header), file=fnameout2, append=F, col.names=F, row.names=F, quote=F)
write.table(t(out2), file=fnameout2, append=F, col.names=header, row.names=F, quote=F)
if(!newfile2)
write.table(t(out2), file=fnameout2, append=T, col.names=F, row.names=F, quote=F)
newfile2=F
}
footfile<-fnameout2
footdata<-as.matrix(read.table(footfile,header=TRUE))
ident=footdata[,1]
evn1=footdata[,2]
#bcf=footdata[,3]
site=footdata[,7]
type=footdata[,8]
d3=dim(footdata)
lin3=d3[1]
fnameout3=paste(pfbpath,"FP_BC_3km_time_spent_2.1.4bcs.after.norm.txt",sep="")
flog.info("Output to: ",fnameout3, name='logger.b')
for(kk in 1:4)
{
amtsum=0
baosum=0
lefssum=0
sctsum=0
strsum=0
wbisum=0
wgcsum=0
wktsum=0
carsum=0
etlsum=0
lefasum=0
nhasum=0
tgcsum=0
thdsum=0
amtcount=0
baocount=0
lefscount=0
sctcount=0
strcount=0
wbicount=0
wgccount=0
wktcount=0
carcount=0
etlcount=0
lefacount=0
nhacount=0
tgccount=0
thdcount=0
for(kk in 1:4)
{
bcf=footdata[,2+kk]
for (i in 1:lin3)
{
if(type[i]=="surface" && site[i]=="AMT")
{
amtsum=amtsum+as.numeric(bcf[i])
amtcount=amtcount+1
}
if(type[i]=="surface" && site[i]=="BAO")
{
baosum=baosum+as.numeric(bcf[i])
baocount=baocount+1
}
if(type[i]=="surface" && site[i]=="LEF")
{
lefssum=lefssum+as.numeric(bcf[i])
lefscount=lefscount+1
}
if(type[i]=="surface" && site[i]=="SCT")
{
sctsum=sctsum+as.numeric(bcf[i])
sctcount=sctcount+1
}
if(type[i]=="surface" && site[i]=="STR")
{
strsum=strsum+as.numeric(bcf[i])
strcount=strcount+1
}
if(type[i]=="surface" && site[i]=="WBI")
{
wbisum=wbisum+as.numeric(bcf[i])
wbicount=wbicount+1
}
if(type[i]=="surface" && site[i]=="WGC")
{
wgcsum=wgcsum+as.numeric(bcf[i])
wgccount=wgccount+1
}
if(type[i]=="surface" && site[i]=="WKT")
{
wktsum=wktsum+as.numeric(bcf[i])
wktcount=wktcount+1
}
if(type[i]=="aircraft" && site[i]=="CAR")
{
carsum=carsum+as.numeric(bcf[i])
carcount=carcount+1
}
if(type[i]=="aircraft" && site[i]=="ETL")
{
etlsum=etlsum+as.numeric(bcf[i])
etlcount=etlcount+1
}
if(type[i]=="aircraft" && site[i]=="LEF")
{
lefasum=lefasum+as.numeric(bcf[i])
lefacount=lefacount+1
}
if(type[i]=="aircraft" && site[i]=="NHA")
{
nhasum=nhasum+as.numeric(bcf[i])
nhacount=nhacount+1
}
if(type[i]=="aircraft" && site[i]=="TGC")
{
tgcsum=tgcsum+as.numeric(bcf[i])
tgccount=tgccount+1
}
if(type[i]=="aircraft" && site[i]=="THD")
{
thdsum=thdsum+as.numeric(bcf[i])
thdcount=thdcount+1
}
}
newfile3=T
for (i in 1:lin3) # for the site AMT, lin3 should be replaced with amtcount
{
tmp=bcf[i] #footdata[,2+kk]
if(type[i]=="surface" && site[i]=="AMT")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(amtsum/amtcount)
if(type[i]=="surface" && site[i]=="BAO")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(baosum/baocount)
if(type[i]=="surface" && site[i]=="LEF")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(lefssum/lefscount)
if(type[i]=="surface" && site[i]=="SCT")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(sctsum/sctcount)
if(type[i]=="surface" && site[i]=="STR")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(strsum/strcount)
if(type[i]=="surface" && site[i]=="WBI")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(wbisum/wbicount)
if(type[i]=="surface" && site[i]=="WGC")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(wgcsum/wgccount)
if(type[i]=="surface" && site[i]=="WKT")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(wktsum/wktcount)
if(type[i]=="aircraft" && site[i]=="CAR")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(carsum/carcount)
if(type[i]=="aircraft" && site[i]=="ETL")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(etlsum/etlcount)
if(type[i]=="aircraft" && site[i]=="LEF")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(lefasum/lefacount)
if(type[i]=="aircraft" && site[i]=="NHA")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(nhasum/nhacount)
if(type[i]=="aircraft" && site[i]=="TGC")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(tgcsum/tgccount)
if(type[i]=="aircraft" && site[i]=="THD")
footdata[i,2+kk]=as.numeric(footdata[i,2+kk])/(thdsum/thdcount)
}
}
for (i in 1:lin3)
{
if(site[i]=="AMT"||site[i]=="BAO"||site[i]=="LEF"||site[i]=="SCT"||site[i]=="STR"||site[i]=="WBI"||site[i]=="WGC"
||site[i]=="WKT"||site[i]=="CAR"||site[i]=="ETL"||site[i]=="NHA"||site[i]=="TGC"||site[i]=="THD")
{
outlist=c(as.numeric(footdata[i,3]),as.numeric(footdata[i,4]),as.numeric(footdata[i,5]),as.numeric(footdata[i,6]))
out3=c(ident[i],evn1[i],tmp, round(outlist,6), site[i], type[i])
header=c("ident","eventid","bc1","bc2","bc3","bc4","site","type")
if(newfile3)
write.table(t(out3), file=fnameout3, append=F, col.names=header, row.names=F, quote=F)
if(!newfile3)
write.table(t(out3), file=fnameout3, append=T, col.names=F, row.names=F, quote=F)
newfile3=F
}
}
}
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