diff --git a/clone_ctdas.sh b/clone_ctdas.sh
index 69ca08c5c965a660eb39f93593c62e98d6b59cea..c8df8c0f1ea9b2e69b0a8af8ccfe195fa9895eeb 100755
--- a/clone_ctdas.sh
+++ b/clone_ctdas.sh
@@ -49,6 +49,7 @@ fi
 
 mkdir -p ${rundir}
 rsync -ru --cvs-exclude --exclude=*nc ${sourcedir}/* ${rundir}/
+rsync -ru --cvs-exclude ${sourcedir}/da/analysis/*nc ${rundir}/da/analysis/
 cd ${rundir}
 
 echo "Modifying jb file, py file, and rc-file"