Merge branch 'workingHans' into 'master'

Working hans

See merge request !9

Classes/Species.py

+import pandas as pd
+import os
+import pathlib
+
+import sys
+sys.path.append('..')
+
+class TabularSpecies:
+    """
+    Class holding pandas data frame and helper dicts on all MNP species
+    """
+
+    def __init__(self):
+        filepath = pathlib.Path(__file__)
+
+        # De volledige Species tabel als Pandas dataframe
+        benb_dir = os.path.dirname(os.path.dirname(filepath))
+        self.df = pd.read_csv(os.path.join(benb_dir, r'resources\mnp_species.csv'), sep=',', comment='#')
+
+        # Dictionaries tussen code, lokale naam, wetenschappelijke naam
+        self.code2local = dict(zip(self.df.Species_code, self.df.Local_name))
+        self.local2code = dict(zip(self.df.Local_name, self.df.Species_code))
+
+        self.code2scientific = dict(zip(self.df.Species_code, self.df.Scientific_name))
+        self.scientific2code = dict(zip(self.df.Scientific_name, self.df.Species_code))
+
+        self.local2scientific = dict(zip(self.df.Local_name, self.df.Scientific_name))
+        self.scientific2local = dict(zip(self.df.Scientific_name, self.df.Local_name))
+
+        self.code2taxon = dict(zip(self.df.Species_code, self.df.taxon))
+
+        # Dictionaries to self, is usefull sometimes. Trust me...
+        self.local2local = dict(zip(self.df.Local_name, self.df.Local_name))
+        self.code2code = dict(zip(self.df.Species_code, self.df.Species_code))
+        self.scientific2scientific = dict(zip(self.df.Scientific_name, self.df.Scientific_name))
+
+        # Dict between species code and boolean species list
+        self.code2sel468 = dict(zip(self.df.Species_code, self.df.sel468.map({1: True,  0: False})))
+        self.code2selall = dict(zip(self.df.Species_code, self.df.selall.map({1: True,  0: False})))
+        self.code2sel281 = dict(zip(self.df.Species_code, self.df.sel281.map({1: True,  0: False})))
+        self.code2sel146 = dict(zip(self.df.Species_code, self.df.sel146.map({1: True,  0: False})))
+
+
+class IndividualSpecies:
+    """
+    Class for holding properties of a single species instance.
+    Hans Roelofsen, WEnR, 12 jan 2022
+    """
+
+    def __init__(self, x):
+        """
+        Initiate for a species.
+        :param x: species code, local name or scientific name
+        """
+
+        species_tab = TabularSpecies()
+
+        species_identifiers_full = ['Species_code', 'Local_name', 'Scientific_name']
+        species_identifiers_brief = ['code', 'local', 'scientific']
+
+        try:
+            # Determine if X is a species code, local name, scientific name or not-existing
+            isin = [x in getattr(species_tab.df, col).values for col
+                    in species_identifiers_full].index(True)
+            typer = species_identifiers_brief[isin]
+        except ValueError:
+            print('{} is not a recognized species'.format(x))
+            raise
+
+        self.taxondict = {'S02': 'V', 'S06': 'E', 'S09': 'P'}
+
+        # Set all relevant attributes
+        self.code = getattr(species_tab, '{}2code'.format(typer))[x]  # Species code
+        self.local = getattr(species_tab, '{}2local'.format(typer))[x]  # Species local name
+        self.scientific = getattr(species_tab, '{}2scientific'.format(typer))[x]  # Species Scientific name
+        self.taxon = self.taxondict[self.code[:3]]
+        self.sel281 = species_tab.code2sel281[self.code]  # boolean, species is part of 281 selection?
+        self.sel468 = species_tab.code2sel468[self.code]  # idem for 468 selection
+        self.sel146 = species_tab.code2sel146[self.code]  # idem foo 146 selection
+        self.selall = species_tab.code2selall[self.code]  # catch all
+
+        self.groupinfo = '146:{0} - 281:{1} - 468:{2}'.format(self.sel146, self.sel281, self.sel468)
\ No newline at end of file

dkq.py

+"""
+python program for quering MNP draagkracht file
+Hans Roelofsen, jan 2022
+"""
+
+import pandas as pd
+import os
+
+from fix_bt import fix_bt
+from snl_beheertypen import get_snl_beheertypen_list
+from snl_beheertypen import btcode2description
+from Classes import Species as species
+# from Classes.Species import TabSpeciesInstance as mnps
+
+species_table = species.TabularSpecies()
+
+class DraagKracht:
+
+    def __init__(self):
+        self.dkdir = r'W:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v05_2021_04_08'
+        self.defaultdk = r'03_MNP_versie5_par_density_factors_BT2021_v3.csv'
+        self.snl_bt = get_snl_beheertypen_list(of='full')
+        self.use_default = True
+        self.bt_column = 'Land_type_code'
+        self.dk = None
+
+    def read_dk(self, dk_file='default', bt_column=None):
+        """
+        Read a draagkrachten file
+        :param dk_file: name of a draagrkachten file
+        :param bt_column: name of column in non-default file with BT codes
+        :return: pd dataframe
+        """
+
+        if dk_file != 'default':
+            self.use_default = False
+            self.bt_column = bt_column
+            target = dk_file
+        else:
+            target = self.defaultdk
+        setattr(self, "dk", pd.read_csv(os.path.join(self.dkdir, target)))
+
+    def query4bt(self, bt_lst: list, of, sp_sel='281'):
+        """
+        query the draagkrachten for a specific beheertype
+        :param bt_lst: beheertype code
+        :param of: output format
+        :param sp_sel: use which species list? 1018, 468 or 281?
+        :return: str to stdout
+        """
+
+        for bt in bt_lst:
+            query = '({0} in {1}) and selection == True'.format(self.bt_column, [fix_bt(bt, as_mnp=True)])
+            sel = self.dk.assign(selection=self.dk.Species_code.map(getattr(species_table, 'code2sel{}'.format(sp_sel)))) \
+                      .query(query)
+            counts = sel.Species_code.map(species_table.code2taxon).value_counts()
+            print('{0}-{1}: {2} vogel, {3} vlinder {4} plant. {5} total (out of {6}).'\
+                  .format(bt, btcode2description(bt), counts.get('V', 0), counts.get('E', 0), counts.get('P', 0),
+                          sel.shape[0], sp_sel if sp_sel != 'all' else '1081'))
+
+            if of == 'full':
+                print(sel.assign(local=sel.Species_code.map(species_table.code2local),
+                                 taxon=sel.Species_code.map(species_table.code2taxon))\
+                         .sort_values(by=['taxon', 'local']) \
+                         .loc[:, ['Species_code', 'taxon', 'Land_type_quality', 'local']] \
+                         .to_csv(sep='\t', index=False, header=False))
+
+    def query4species(self, species_lst: list, of):
+        """
+        query draagkrachten for one or more species
+        :param species_lst:
+        :param of:
+        :return:
+        """
+
+        for x in species_lst:
+            sp = species.IndividualSpecies(x)
+            query = 'Species_code in ["{0}"]'.format(sp.code)
+            sel = self.dk.query(query)
+            print("{0} ({1}-{2}. Listed in: {3}): {4} beheertypen".format(sp.local, sp.scientific, sp.code,
+                                                                          sp.groupinfo, sel.shape[0]))
+            if of == 'full':
+                print(sel.assign(desc=getattr(sel, self.bt_column).map(btcode2description)) \
+                         .loc[:, ['Land_type_quality', self.bt_column, 'desc']] \
+                         .sort_values(by=self.bt_column) \
+                         .to_csv(sep='\t', index=False, header=False))
+
+
+if __name__ == '__main__':
+    import argparse
+
+    parser = argparse.ArgumentParser()
+    parser.add_argument('--qbt', nargs='+', type=str)
+    parser.add_argument('--qsp', nargs='+', type=str)
+    parser.add_argument('--of', choices=['full', 'sparse'], default='full')
+    parser.add_argument('--sp_list', choices=['281', '468', '146', 'all'], default='281', type=str)
+    args = parser.parse_args()
+
+    hans = DraagKracht()
+    hans.read_dk()
+    if args.qbt:
+        hans.query4bt(bt_lst=args.qbt, of=args.of, sp_sel=args.sp_list)
+    if args.qsp:
+        hans.query4species(species_lst=args.qsp, of=args.of)
+
+
+
+d = {'S02': 'V',
+     'S06': 'E',
+     'S09': 'P'}
+full = pd.read_csv(r'w:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\01_Base_species_name.csv', sep=',', comment='#')
+full.set_index(keys='Species_code', drop=False, inplace=True)
+full['taxon'] = full.index.str.slice(0,3).map(d)
+sel468 = pd.read_csv(r'W:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v05_2021_04_08\09_MNP_versie4_Group_Species_valid model_468.csv', sep=',', index_col='Species_code')
+sel281 = pd.read_csv(r'W:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v05_2021_04_08\09_MNP_versie4_Species_group_valid_model_280.csv', sep=',', index_col='Species_code')
+sel146 = pd.read_csv(r'W:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\09_MNP_versie4_Species_group_valid_model_typisch_146.csv', sep=',', index_col='Species_code')
+in468 = full.index.intersection(sel468.index)
+in281 = full.index.intersection(sel281.index)
+in146 = full.index.intersection(sel146.index)
+full.loc[:, 'sel468'] = 0
+full.loc[in468, 'sel468'] = 1
+full.loc[:, 'sel281'] = 0
+full.loc[in281, 'sel281'] = 1
+full.loc[:, 'sel146'] = 0
+full.loc[in146, 'sel146'] = 1
+full.loc[:, 'sel1018'] = 1
+full.loc[:, 'selall'] = 1
+full.to_clipboard(sep=',', index=False)

fix_bt.py

 import numbers
 
-def fix_bt(code_in, as_mnp=False):
+
+def fix_bt(code_in, as_mnp=False, verbose=False, strict=True):
     """
     Parser for Beheertype codes to repair abbreviated codes and/or MNP extension
     eg. 02.01     --> N02.01 if as_mnp==False
@@ -17,44 +18,61 @@ def fix_bt(code_in, as_mnp=False):
     N04.02.00 is equivalent to N04.02
     :param code_in: beheertypecode in any format
     :param as_mnp: return MNP style beheertypecode, default=False
+    :param verbose: verbose feedback
+    :param strict: raise error if bt code is unexpected
     :return: beheertypecode
     """
+
+    if verbose:
+        print('from {}'.format(code_in), end=' ')
+
     if isinstance(code_in, numbers.Number):
         code_in = str(code_in)
 
     # Identify parts of code
     parts = code_in.split(".")
     if len(parts) == 1:
-        raise AssertionError("Unexpected BT code: {}".format(code_in))
+        if strict:
+            raise AssertionError("1. Unexpected BT code: {}".format(code_in))
+        else:
+            return None
     elif len(parts) == 2:
         top, sub = parts
         neer = None
     elif len(parts) == 3:
         top, sub, neer = parts
     else:
-        raise AssertionError("Unexpected BT code: {}".format(code_in))
+        if strict:
+            raise AssertionError("2. Unexpected BT code: {}".format(code_in))
+        else:
+            return None
 
     # Verify TOP and add "N" is required
-    if top.isdigit():
-        top = "N{0}".format(top.zfill(2))
-    else:
-        assert top[0].isupper(), "Unexpected BT Code format: {}".format(code_in)
+    assert top[0].upper() in ['N', 'W', 'S', 'T', 'A', 'L'], "3. Unexpected BT Code: {}".format(code_in)
+    if top[0].islower():
+        top = top.capitalize()
+    assert top[1].isdigit(), '3. Unexpected BT code: {}'.format(code_in)
+    assert top[2].isdigit(), '3. Unexpected BT code: {}'.format(code_in)
+    assert len(top) == 3, "3. Unexpected BT Code: {}".format(code_in)
 
     # Verify SUB
-    assert sub.isdigit and len(sub) == 2, "Unexpected BT Code format: {}".format(code_in)
+    assert sub.isdigit and len(sub) == 2, "4. Unexpected BT Code: {}".format(code_in)
 
     # Verify NEER and check if it is neergeschaald or not
     keep_neer = False
     if neer:
-        assert neer.isdigit and len(neer) == 2, "Unexpected BT Code format: {}".format(code_in)
+        assert neer.isdigit and len(neer) == 2, "5. Unexpected BT Code: {}".format(code_in)
         if int(neer) > 0:
             keep_neer = True
 
     # Construct output
     head = "{}.{}".format(top, sub)
     if keep_neer:
-        return "{}.{}".format(head, neer)
+        output = "{}.{}".format(head, neer)
     elif as_mnp:
-        return "{}.00".format(head)
+        output = "{}.00".format(head)
     else:
-        return head
+        output = head
+    if verbose:
+        print('to {}'.format(output))
+    return output
\ No newline at end of file

mnp_species.py

+"""
+Module to read MNP species CSV tab and provide several helper dictionaries
+"""
+
+import pandas as pd
+import os
+import pathlib
+
+filepath = pathlib.Path(__file__)
+
+# De volledige Species tabel als Pandas dataframe
+species_tab = pd.read_csv(os.path.join(os.path.dirname(filepath), r'resources\mnp_species.csv'), sep=',', comment='#')
+
+# Dictionaries tussen code, lokale naam, wetenschappelijke naam
+code2local = dict(zip(species_tab.Species_code, species_tab.Local_name))
+local2code = dict(zip(species_tab.Local_name, species_tab.Species_code))
+
+code2scientific = dict(zip(species_tab.Species_code, species_tab.Scientific_name))
+scientific2code = dict(zip(species_tab.Scientific_name, species_tab.Species_code))
+
+local2scientific = dict(zip(species_tab.Local_name, species_tab.Scientific_name))
+scientific2local = dict(zip(species_tab.Scientific_name, species_tab.Local_name))
+
+code2taxon = dict(zip(species_tab.Species_code, species_tab.taxon))
+
+# Dictionaries to self, is usefull sometimes. Trust me...
+local2local = dict(zip(species_tab.Local_name, species_tab.Local_name))
+code2code = dict(zip(species_tab.Species_code, species_tab.Species_code))
+scientific2scientific = dict(zip(species_tab.Scientific_name, species_tab.Scientific_name))
+
+# Dict between species code and boolean species list
+code2sel468 = dict(zip(species_tab.Species_code, species_tab.sel468.map({1: True,  0: False})))
+code2sel281 = dict(zip(species_tab.Species_code, species_tab.sel281.map({1: True,  0: False})))
+code2sel146 = dict(zip(species_tab.Species_code, species_tab.sel146.map({1: True,  0: False})))
+code2selall = dict(zip(species_tab.Species_code, species_tab.selall.map({1: True,  0: False})))

resources/mnp_species.csv

-# MNP Species tabel. Gebaseerd op w:\PROJECTS\qmar\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\08_MNP_versie4_par_taxonomic_group.csv en w:\PROJECTS\qmar\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\09_MNP_versie4_Group_Species_valid model_468.csv
-# Door: Hans  Roelofsen, 18-May-2021 10:36
-Species_code,Scientific_name,Local_name,tax_group
-S02000070,Tachybaptus ruficollis,Dodaars,Vertebraten
-S02000120,Podiceps nigricollis,Geoorde fuut,Vertebraten
-S02000950,Botaurus stellaris,Roerdomp,Vertebraten
-S02000980,Ixobrychus minutus,Woudaap,Vertebraten
-S02001040,Nycticorax nycticorax,Kwak,Vertebraten
-S02001210,Casmerodius albus,Grote zilverreiger,Vertebraten
-S02001240,Ardea purpurea,Purperreiger,Vertebraten
-S02001340,Ciconia ciconia ssp. ciconia,Ooievaar,Vertebraten
-S02001440,Platalea leucorodia,Lepelaar,Vertebraten
-S02001730,Tadorna tadorna,Bergeend,Vertebraten
-S02001820,Anas strepera,Krakeend,Vertebraten
-S02001840,Anas crecca,Wintertaling,Vertebraten
-S02001890,Anas acuta ssp. acuta,Pijlstaart,Vertebraten
-S02001910,Anas querquedula,Zomertaling,Vertebraten
-S02001940,Anas clypeata,Slobeend,Vertebraten
-S02001960,Netta rufina,Krooneend,Vertebraten
-S02002030,Aythya fuligula,Kuifeend,Vertebraten
-S02002060,Somateria mollissima,Eider,Vertebraten
-S02002310,Pernis apivorus,Wespendief,Vertebraten
-S02002600,Circus aeruginosus,Bruine kiekendief,Vertebraten
-S02002610,Circus cyaneus,Blauwe kiekendief,Vertebraten
-S02002630,Circus pygargus,Grauwe kiekendief,Vertebraten
-S02002670,Accipiter gentilis ssp. gentilis,Havik,Vertebraten
-S02002870,Buteo buteo ssp. buteo,Buizerd,Vertebraten
-S02003040,Falco tinnunculus ssp. tinnunculus,Torenvalk,Vertebraten
-S02003320,Tetrao tetrix,Korhoen,Vertebraten
-S02003670,Perdix perdix,Patrijs,Vertebraten
-S02003700,Coturnix coturnix,Kwartel,Vertebraten
-S02004070,Rallus aquaticus,Waterral,Vertebraten
-S02004080,Porzana porzana,Porseleinhoen,Vertebraten
-S02004100,Porzana parva,Klein waterhoen,Vertebraten
-S02004110,Porzana pusilla,Kleinst waterhoen,Vertebraten
-S02004210,Crex crex,Kwartelkoning,Vertebraten
-S02004330,Grus grus,Kraanvogel,Vertebraten
-S02004500,Haematopus ostralegus,Scholekster,Vertebraten
-S02004560,Recurvirostra avosetta,Kluut,Vertebraten
-S02004590,Burhinus oedicnemus ssp. oedicnemus,Griel,Vertebraten
-S02004690,Charadrius dubius,Kleine plevier,Vertebraten
-S02004700,Charadrius hiaticula,Bontbekplevier,Vertebraten
-S02004770,Charadrius alexandrinus,Strandplevier,Vertebraten
-S02005170,Philomachus pugnax,Kemphaan,Vertebraten
-S02005190,Gallinago gallinago,Watersnip,Vertebraten
-S02005320,Limosa limosa,Grutto,Vertebraten
-S02005410,Numenius arquata,Wulp,Vertebraten
-S02005460,Tringa totanus,Tureluur,Vertebraten
-S02005750,Larus melanocephalus,Zwartkopmeeuw,Vertebraten
-S02006110,Sterna sandvicensis,Grote stern,Vertebraten
-S02006150,Sterna hirundo,Visdief,Vertebraten
-S02006160,Sterna paradisaea,Noordse stern,Vertebraten
-S02006240,Sterna albifrons,Dwergstern,Vertebraten
-S02006270,Chlidonias niger ssp. niger,Zwarte stern,Vertebraten
-S02007680,Asio flammeus,Velduil,Vertebraten
-S02007780,Caprimulgus europaeus ssp. europaeus,Nachtzwaluw,Vertebraten
-S02008310,Alcedo atthis ssp. ispida,IJsvogel,Vertebraten
-S02008480,Jynx torquilla,Draaihals,Vertebraten
-S02008560,Picus viridis,Groene specht,Vertebraten
-S02008630,Dryocopus martius,Zwarte specht,Vertebraten
-S02008760,Dendrocopos major,Grote bonte specht,Vertebraten
-S02008830,Dendrocopos medius,Middelste bonte specht,Vertebraten
-S02008870,Dendrocopos minor,Kleine bonte specht,Vertebraten
-S02009740,Lullula arborea,Boomleeuwerik,Vertebraten
-S02009760,Alauda arvensis,Veldleeuwerik,Vertebraten
-S02009810,Riparia riparia ssp. riparia,Oeverzwaluw,Vertebraten
-S02010050,Anthus campestris,Duinpieper,Vertebraten
-S02010090,Anthus trivialis,Boompieper,Vertebraten
-S02010110,Anthus pratensis,Graspieper,Vertebraten
-S02010171,Motacilla flava,Gele kwikstaart,Vertebraten
-S02010190,Motacilla cinerea ssp. cinerea,Grote gele kwikstaart,Vertebraten
-S02011040,Luscinia megarhynchos,Nachtegaal,Vertebraten
-S02011060,Luscinia svecica,Blauwborst,Vertebraten
-S02011220,Phoenicurus phoenicurus,Gekraagde roodstaart,Vertebraten
-S02011370,Saxicola rubetra,Paapje,Vertebraten
-S02011390,Saxicola rubicola,Roodborsttapuit,Vertebraten
-S02011460,Oenanthe oenanthe,Tapuit,Vertebraten
-S02012000,Turdus philomelos,Zanglijster,Vertebraten
-S02012200,Cettia cetti,Cetti's zanger,Vertebraten
-S02012360,Locustella naevia,Sprinkhaanzanger,Vertebraten
-S02012380,Locustella luscinioides,Snor,Vertebraten
-S02012430,Acrocephalus schoenobaenus,Rietzanger,Vertebraten
-S02012530,Acrocephalus arundinaceus,Grote karekiet,Vertebraten
-S02012590,Hippolais icterina,Spotvogel,Vertebraten
-S02012740,Sylvia curruca,Braamsluiper,Vertebraten
-S02013080,Phylloscopus sibilatrix,Fluiter,Vertebraten
-S02013150,Regulus ignicapilla,Vuurgoudhaan,Vertebraten
-S02013350,Muscicapa striata,Grauwe vliegenvanger,Vertebraten
-S02013490,Ficedula hypoleuca ssp. hypoleuca,Bonte vliegenvanger,Vertebraten
-S02013640,Panurus biarmicus,Baardman,Vertebraten
-S02014400,Parus palustris ssp. palustris,Glanskop,Vertebraten
-S02014420,Parus montanus,Matkop,Vertebraten
-S02014790,Sitta europaea,Boomklever,Vertebraten
-S02014870,Certhia brachydactyla,Boomkruiper,Vertebraten
-S02014900,Remiz pendulinus,Buidelmees,Vertebraten
-S02015080,Oriolus oriolus,Wielewaal,Vertebraten
-S02015150,Lanius collurio,Grauwe klauwier,Vertebraten
-S02015200,Lanius excubitor,Klapekster,Vertebraten
-S02015720,Corvus corax,Raaf,Vertebraten
-S02016380,Fringilla montifringilla,Keep,Vertebraten
-S02016490,Chloris chloris,Groenling,Vertebraten
-S02016530,Carduelis carduelis,Putter,Vertebraten
-S02016540,Carduelis spinus,Sijs,Vertebraten
-S02016600,Carduelis cannabina,Kneu,Vertebraten
-S02016634,Carduelis cabaret,Kleine barmsijs,Vertebraten
-S02017100,Pyrrhula pyrrhula ssp. europoea,Midden-Europese goudvink,Vertebraten
-S02017170,Coccothraustes coccothraustes,Appelvink,Vertebraten
-S02018570,Emberiza citrinella,Geelgors,Vertebraten
-S02018660,Emberiza hortulana,Ortolaan,Vertebraten
-S02018820,Emberiza calandra,Grauwe gors,Vertebraten
-S06000002,Carterocephalus palaemon,Bont dikkopje,Evertebraten
-S06000003,Thymelicus sylvestris,Geelsprietdikkopje,Evertebraten
-S06000004,Thymelicus lineola,Zwartsprietdikkopje,Evertebraten
-S06000006,Hesperia comma,Kommavlinder,Evertebraten
-S06000007,Ochlodes faunus,Groot dikkopje,Evertebraten
-S06000008,Erynnis tages,Bruin dikkopje,Evertebraten
-S06000012,Pyrgus malvae,Aardbeivlinder,Evertebraten
-S06000019,Anthocharis cardamines,Koninginnenpage,Evertebraten
-S06000035,Callophrys rubi,Groentje,Evertebraten
-S06000042,Lycaena dispar,Grote vuurvlinder,Evertebraten
-S06000044,Lycaena tityrus,Bruine vuurvlinder,Evertebraten
-S06000049,Plebeius argus,Heideblauwtje,Evertebraten
-S06000050,Plebeius idas ssp. idas,Vals heideblauwtje,Evertebraten
-S06000051,Plebeius optilete,Veenbesblauwtje,Evertebraten
-S06000052,Aricia agestis,Bruin blauwtje,Evertebraten
-S06000057,Maculinea alcon,Gentiaanblauwtje,Evertebraten
-S06000061,Maculinea teleius,Pimpernelblauwtje,Evertebraten
-S06000062,Maculinea nausithous,Donker pimpernelblauwtje,Evertebraten
-S06000064,Limenitis camilla,Kleine ijsvogelvlinder,Evertebraten
-S06000065,Limenitis populi,Grote ijsvogelvlinder,Evertebraten
-S06000066,Apatura iris,Grote weerschijnvlinder,Evertebraten
-S06000076,Boloria aquilonaris,Veenbesparelmoervlinder,Evertebraten
-S06000077,Boloria selene,Zilveren maan,Evertebraten
-S06000080,Brenthis ino,Purperstreepparelmoervlinder,Evertebraten
-S06000081,Issoria lathonia,Kleine parelmoervlinder,Evertebraten
-S06000082,Argynnis niobe,Duinparelmoervlinder,Evertebraten
-S06000084,Argynnis aglaja,Grote parelmoervlinder,Evertebraten
-S06000088,Melitaea cinxia,Veldparelmoervlinder,Evertebraten
-S06000092,Lasiommata megera,Argusvlinder,Evertebraten
-S06000097,Coenonympha arcania,Tweekleurig hooibeestje,Evertebraten
-S06000098,Coenonympha pamphilus,Hooibeestje,Evertebraten
-S06000099,Coenonympha tullia ssp. tullia,Veenhooibeestje,Evertebraten
-S06000101,Maniola jurtina,Bruin zandoogje,Evertebraten
-S06000106,Hipparchia semele,Heivlinder,Evertebraten
-S06000107,Hipparchia statilinus,Kleine heivlinder,Evertebraten
+# MNP Species tabel. Gebaseerd op w:\PROJECTS\qmar\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\08_MNP_versie4_par_taxonomic_group.csv en W:\PROJECTS\QMAR\MNP-SNL-ParameterSet\Parameters_v06_2019_12_09\01_Base_species_name.csv
+# Door: Hans  Roelofsen, 12/Jan/2022 12:00
+Species_code,Scientific_name,Local_name,taxon,sel468,sel281,sel146,sel1018,selall
+S02000020,Gavia stellata,Roodkeelduiker,V,0,0,0,1,1
+S02000030,Gavia arctica ssp. arctica,Parelduiker,V,0,0,0,1,1
+S02000070,Tachybaptus ruficollis,Dodaars,V,1,0,0,1,1
+S02000110,Podiceps auritus,Kuifduiker,V,0,0,0,1,1
+S02000120,Podiceps nigricollis,Geoorde fuut,V,1,1,1,1,1
+S02000550,Oceanodroma leucorhoa ssp. leucorhoa,Vaal stormvogeltje,V,0,0,0,1,1
+S02000720,Phalacrocorax carbo,Aalscholver,V,0,0,0,1,1
+S02000950,Botaurus stellaris,Roerdomp,V,1,1,0,1,1
+S02000980,Ixobrychus minutus,Woudaap,V,1,1,0,1,1
+S02001040,Nycticorax nycticorax,Kwak,V,1,1,1,1,1
+S02001190,Egretta garzetta,Kleine zilverreiger,V,0,0,0,1,1
+S02001210,Casmerodius albus,Grote zilverreiger,V,1,1,0,1,1
+S02001240,Ardea purpurea,Purperreiger,V,1,1,0,1,1
+S02001310,Ciconia nigra,Zwarte ooievaar,V,0,0,0,1,1
+S02001340,Ciconia ciconia ssp. ciconia,Ooievaar,V,1,1,0,1,1
+S02001440,Platalea leucorodia,Lepelaar,V,1,1,0,1,1
+S02001730,Tadorna tadorna,Bergeend,V,1,1,1,1,1
+S02001820,Anas strepera,Krakeend,V,1,1,0,1,1
+S02001840,Anas crecca,Wintertaling,V,1,1,1,1,1
+S02001890,Anas acuta ssp. acuta,Pijlstaart,V,1,0,0,1,1
+S02001910,Anas querquedula,Zomertaling,V,1,1,0,1,1
+S02001940,Anas clypeata,Slobeend,V,1,1,0,1,1
+S02001960,Netta rufina,Krooneend,V,1,1,0,1,1
+S02002030,Aythya fuligula,Kuifeend,V,1,1,0,1,1
+S02002040,Aythya marila,Topper,V,0,0,0,1,1
+S02002060,Somateria mollissima,Eider,V,1,1,1,1,1
+S02002200,Mergellus albellus,Nonnetje,V,0,0,0,1,1
+S02002210,Mergus serrator,Middelste zaagbek,V,0,0,0,1,1
+S02002230,Mergus merganser ssp. merganser,Grote zaagbek,V,0,0,0,1,1
+S02002310,Pernis apivorus,Wespendief,V,1,1,1,1,1
+S02002380,Milvus migrans ssp. migrans,Zwarte wouw,V,0,0,0,1,1
+S02002390,Milvus milvus ssp. milvus,Rode wouw,V,0,0,0,1,1
+S02002430,Haliaeetus albicilla,Zeearend,V,0,0,0,1,1
+S02002600,Circus aeruginosus,Bruine kiekendief,V,1,0,0,1,1
+S02002610,Circus cyaneus,Blauwe kiekendief,V,1,1,0,1,1
+S02002630,Circus pygargus,Grauwe kiekendief,V,1,1,0,1,1
+S02002670,Accipiter gentilis ssp. gentilis,Havik,V,1,1,0,1,1
+S02002870,Buteo buteo ssp. buteo,Buizerd,V,1,1,0,1,1
+S02003010,Pandion haliaetus,Visarend,V,0,0,0,1,1
+S02003040,Falco tinnunculus ssp. tinnunculus,Torenvalk,V,1,1,0,1,1
+S02003090,Falco columbarius ssp. aesalon,Smelleken,V,0,0,0,1,1
+S02003200,Falco peregrinus ssp. peregrinus,Slechtvalk,V,0,0,0,1,1
+S02003320,Tetrao tetrix,Korhoen,V,1,1,0,1,1
+S02003670,Perdix perdix,Patrijs,V,1,0,0,1,1
+S02003700,Coturnix coturnix,Kwartel,V,1,0,0,1,1
+S02004070,Rallus aquaticus,Waterral,V,1,1,0,1,1
+S02004080,Porzana porzana,Porseleinhoen,V,1,1,0,1,1
+S02004100,Porzana parva,Klein waterhoen,V,1,1,0,1,1
+S02004110,Porzana pusilla,Kleinst waterhoen,V,1,1,0,1,1
+S02004210,Crex crex,Kwartelkoning,V,1,1,0,1,1
+S02004330,Grus grus,Kraanvogel,V,1,1,0,1,1
+S02004500,Haematopus ostralegus,Scholekster,V,1,1,0,1,1
+S02004560,Recurvirostra avosetta,Kluut,V,1,1,1,1,1
+S02004590,Burhinus oedicnemus ssp. oedicnemus,Griel,V,1,1,0,1,1
+S02004690,Charadrius dubius,Kleine plevier,V,1,1,0,1,1
+S02004700,Charadrius hiaticula,Bontbekplevier,V,1,1,0,1,1
+S02004770,Charadrius alexandrinus,Strandplevier,V,1,1,1,1,1
+S02004820,Charadrius morinellus,Morinelplevier,V,0,0,0,1,1
+S02004850,Pluvialis apricaria,Goudplevier,V,0,0,0,1,1
+S02004860,Pluvialis squatarola,Zilverplevier,V,0,0,0,1,1
+S02004930,Vanellus vanellus,Kievit,V,0,0,0,1,1
+S02004960,Calidris canutus ssp. islandica,Groenlandse kanoet,V,0,0,0,1,1
+S02005120,Calidris alpina ssp. alpina,Bonte strandloper,V,0,0,0,1,1
+S02005170,Philomachus pugnax,Kemphaan,V,1,1,0,1,1
+S02005190,Gallinago gallinago,Watersnip,V,1,1,1,1,1
+S02005290,Scolopax rusticola,Houtsnip,V,0,0,0,1,1
+S02005320,Limosa limosa,Grutto,V,1,1,0,1,1
+S02005340,Limosa lapponica ssp. lapponica,Rosse grutto,V,0,0,0,1,1
+S02005410,Numenius arquata,Wulp,V,1,1,1,1,1
+S02005460,Tringa totanus,Tureluur,V,1,1,1,1,1
+S02005540,Tringa glareola,Bosruiter,V,0,0,0,1,1
+S02005640,Phalaropus lobatus,Grauwe franjepoot,V,0,0,0,1,1
+S02005750,Larus melanocephalus,Zwartkopmeeuw,V,1,0,0,1,1
+S02005780,Larus minutus,Dwergmeeuw,V,0,0,0,1,1
+S02005900,Larus canus ssp. canus,Stormmeeuw,V,0,0,0,1,1
+S02005912,Larus fuscus ssp. intermedius,Kleine mantelmeeuw,V,0,0,0,1,1
+S02006060,Sterna caspia,Reuzenstern,V,0,0,0,1,1
+S02006110,Sterna sandvicensis,Grote stern,V,1,1,0,1,1
+S02006150,Sterna hirundo,Visdief,V,1,1,0,1,1
+S02006160,Sterna paradisaea,Noordse stern,V,1,1,0,1,1
+S02006240,Sterna albifrons,Dwergstern,V,1,1,0,1,1
+S02006270,Chlidonias niger ssp. niger,Zwarte stern,V,1,0,0,1,1
+S02007350,Tyto alba ssp. guttata,Kerkuil,V,0,0,0,1,1
+S02007570,Athene noctua ssp. vidalii,Steenuil,V,0,0,0,1,1
+S02007610,Strix aluco,Bosuil,V,0,0,0,1,1
+S02007680,Asio flammeus,Velduil,V,1,1,1,1,1
+S02007780,Caprimulgus europaeus ssp. europaeus,Nachtzwaluw,V,1,1,0,1,1
+S02008310,Alcedo atthis ssp. ispida,IJsvogel,V,1,1,0,1,1
+S02008460,Upupa epops ssp. epops,Hop,V,0,0,0,1,1
+S02008480,Jynx torquilla,Draaihals,V,1,1,0,1,1
+S02008560,Picus viridis,Groene specht,V,1,1,0,1,1
+S02008630,Dryocopus martius,Zwarte specht,V,1,1,1,1,1
+S02008760,Dendrocopos major,Grote bonte specht,V,1,1,1,1,1
+S02008830,Dendrocopos medius,Middelste bonte specht,V,1,1,0,1,1
+S02008870,Dendrocopos minor,Kleine bonte specht,V,1,1,0,1,1
+S02009720,Galerida cristata ssp. cristata,Kuifleeuwerik,V,0,0,0,1,1
+S02009740,Lullula arborea,Boomleeuwerik,V,1,1,1,1,1
+S02009760,Alauda arvensis,Veldleeuwerik,V,1,1,1,1,1
+S02009810,Riparia riparia ssp. riparia,Oeverzwaluw,V,1,0,0,1,1
+S02009920,Hirundo rustica ssp. rustica,Boerenzwaluw,V,0,0,0,1,1
+S02010010,Delichon urbica ssp. urbica,Huiszwaluw,V,0,0,0,1,1
+S02010050,Anthus campestris,Duinpieper,V,1,1,1,1,1
+S02010090,Anthus trivialis,Boompieper,V,1,1,0,1,1
+S02010110,Anthus pratensis,Graspieper,V,1,1,1,1,1
+S02010171,Motacilla flava,Gele kwikstaart,V,1,0,0,1,1
+S02010190,Motacilla cinerea ssp. cinerea,Grote gele kwikstaart,V,1,0,0,1,1
+S02011040,Luscinia megarhynchos,Nachtegaal,V,1,1,1,1,1
+S02011060,Luscinia svecica,Blauwborst,V,1,1,1,1,1
+S02011220,Phoenicurus phoenicurus,Gekraagde roodstaart,V,1,1,0,1,1
+S02011370,Saxicola rubetra,Paapje,V,1,0,0,1,1
+S02011390,Saxicola rubicola,Roodborsttapuit,V,1,1,1,1,1
+S02011460,Oenanthe oenanthe,Tapuit,V,1,1,1,1,1
+S02012000,Turdus philomelos,Zanglijster,V,1,1,0,1,1
+S02012200,Cettia cetti,Cetti's zanger,V,1,0,0,1,1
+S02012360,Locustella naevia,Sprinkhaanzanger,V,1,1,1,1,1
+S02012380,Locustella luscinioides,Snor,V,1,1,0,1,1
+S02012430,Acrocephalus schoenobaenus,Rietzanger,V,1,0,0,1,1
+S02012500,Acrocephalus palustris,Bosrietzanger,V,0,0,0,1,1
+S02012530,Acrocephalus arundinaceus,Grote karekiet,V,1,1,0,1,1
+S02012590,Hippolais icterina,Spotvogel,V,1,1,0,1,1
+S02012740,Sylvia curruca,Braamsluiper,V,1,1,0,1,1
+S02012750,Sylvia communis,Grasmus,V,0,0,0,1,1
+S02012770,Sylvia atricapilla,Zwartkop,V,0,0,0,1,1
+S02013080,Phylloscopus sibilatrix,Fluiter,V,1,1,1,1,1
+S02013150,Regulus ignicapilla,Vuurgoudhaan,V,1,1,0,1,1
+S02013350,Muscicapa striata,Grauwe vliegenvanger,V,1,1,0,1,1
+S02013490,Ficedula hypoleuca ssp. hypoleuca,Bonte vliegenvanger,V,1,1,0,1,1
+S02013640,Panurus biarmicus,Baardman,V,1,0,0,1,1
+S02014400,Parus palustris ssp. palustris,Glanskop,V,1,1,0,1,1
+S02014420,Parus montanus,Matkop,V,1,1,1,1,1
+S02014790,Sitta europaea,Boomklever,V,1,1,1,1,1
+S02014870,Certhia brachydactyla,Boomkruiper,V,1,1,0,1,1
+S02014900,Remiz pendulinus,Buidelmees,V,1,1,0,1,1
+S02015080,Oriolus oriolus,Wielewaal,V,1,1,1,1,1
+S02015150,Lanius collurio,Grauwe klauwier,V,1,1,0,1,1
+S02015200,Lanius excubitor,Klapekster,V,1,1,1,1,1
+S02015230,Lanius senator ssp. senator,Roodkopklauwier,V,0,0,0,1,1
+S02015720,Corvus corax,Raaf,V,1,1,0,1,1
+S02016380,Fringilla montifringilla,Keep,V,1,1,0,1,1
+S02016400,Serinus serinus,Europese kanarie,V,0,0,0,1,1
+S02016490,Chloris chloris,Groenling,V,1,0,0,1,1