minor changes to make initialize into setup calls

gridded/da/analysis/expand_fluxes.py

@@ -1024,7 +1024,7 @@ if __name__ == "__main__":
     logging.root.setLevel(logging.DEBUG)
 
     dacycle = CycleControl(args={'rc':'../../ctdas-od-gfed2-glb6x4-obspack-full.rc'})
-    dacycle.initialize()
+    dacycle.setup()
     dacycle.parse_times()
 
     dasystem = CO2DaSystem('../rc/carbontracker_ct09_opfnew.rc')
@@ -1032,7 +1032,7 @@ if __name__ == "__main__":
     dacycle.dasystem = dasystem
 
     statevector = CO2StateVector()
-    statevector.initialize(dacycle)
+    statevector.setup(dacycle)
 
     while dacycle['time.end'] < dacycle['time.finish']:
         save_weekly_avg_1x1_data(dacycle, statevector)

gridded/da/analysis/expand_mixingratios.py

@@ -324,7 +324,7 @@ if __name__ == "__main__":
     logging.root.setLevel(logging.DEBUG)
 
     dacycle = CycleControl(args={'rc':'../../ctdas-od-gfed2-glb6x4-obspack-full.rc'})
-    dacycle.initialize()
+    dacycle.setup()
     dacycle.parse_times()
 
     dasystem = CO2DaSystem('../rc/carbontracker_ct09_opfnew.rc')

gridded/da/analysis/summarize_obs.py

@@ -339,11 +339,11 @@ if __name__ == '__main__':    # started as script
     logging.root.setLevel(logging.DEBUG)
 
     dacycle = CycleControl(args={'rc':'../../ctdas-od-gfed2-glb6x4-obspack-full.rc'})
-    dacycle.initialize()
+    dacycle.setup()
     dacycle.parse_times()
 
     dasystem = CO2DaSystem('../rc/carbontracker_ct09_opf.rc')
-    dasystem.initialize()
+    dasystem.setup()
 
     dacycle.dasystem = dasystem