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da/cosmo/observationoperator.py

@@ -58,6 +58,9 @@ class ObservationOperator(object):
     def run(self,lag,dacycle):
 
         absolute_start_time = str((to_datetime(dacycle['abs.time.start'])).strftime('%Y-%m-%d'))
+        starth = abs((to_datetime(dacycle['abs.time.start'])-dacycle['time.start']).days)*24
+        endh = abs((to_datetime(dacycle['abs.time.start'])-dacycle['time.finish']).days)*24
+
         f = io.CT_CDF(self.simulated_file, method='create')
         logging.debug('Creating new simulated observation file in ObservationOperator (%s)' % self.simulated_file)
 	
@@ -131,17 +134,17 @@ class ObservationOperator(object):
 
         os.chdir(dacycle['da.obsoperator.home'])
 
-        if os.path.exists("/scratch/snx3000/parsenov/ctdas/"+dacycle['time.start'].strftime('%Y%m%d%H')+"_"+str(168*lag)+"_"+str(168*lag+168)+"/cosmo/output/"):
-            os.rename("/scratch/snx3000/parsenov/ctdas/"+dacycle['time.start'].strftime('%Y%m%d%H')+"_"+str(168*lag)+"_"+str(168*lag+168), "/scratch/snx3000/parsenov/ctdas/non_opt_"+dacycle['time.start'].strftime('%Y%m%d%H')+"_"+str(168*lag)+"_"+str(168*lag+168))
+        if os.path.exists("/scratch/snx3000/parsenov/ctdas/"+absolute_start_time+"_"+str(starth+lag*168)+"_"+str(endh+lag*168)+"/cosmo/output/"):
+            os.rename("/scratch/snx3000/parsenov/ctdas/"+absolute_start_time+"_"+str(starth+lag*168)+"_"+str(endh+lag*168), "/scratch/snx3000/parsenov/ctdas/non_opt_"+dacycle['time.start'].strftime('%Y%m%d%H')+"_"+str(starth+lag*168)+"_"+str(endh+lag*168))
 
-        os.system('python run_chain.py ctdas '+absolute_start_time+' '+str(lag*168)+' '+str(lag*168+168)+' -j meteo icbc emissions biofluxes int2lm post_int2lm cosmo')
+        os.system('python run_chain.py ctdas '+absolute_start_time+' '+str(starth+lag*168)+' '+str(endh+lag*168)+' -j meteo icbc emissions biofluxes int2lm post_int2lm cosmo')
         os.chdir(dacycle['dir.da_run'])
 
         args = [
             (dacycle, hstart, hstop, self.forecast_nmembers)
             for dacycle, (hstart, hstop), self.forecast_nmembers
             in zip(repeat(dacycle),
-                [(168*lag,168*lag+167)],
+                [(starth+168*lag,endh+168*lag-1)],
                 repeat(self.forecast_nmembers))
         ]
 
@@ -172,17 +175,18 @@ class ObservationOperator(object):
 
         self.dacycle = dacycle
         time_stamp = str((dacycle['time.start']+timedelta(hours=hstart)).strftime('%Y%m%d%H'))+'_'+str((dacycle['time.start']+timedelta(hours=hstop)).strftime('%Y%m%d%H'))
+        abs_start_time = str((to_datetime(dacycle['abs.time.start'])).strftime('%Y%m%d%H'))
 
-        cosmo_start = dacycle['time.start'].strftime('%Y%m%d%H') #+timedelta(hours=168)
-        cosmo_out = "/scratch/snx3000/parsenov/ctdas/"+cosmo_start+"_"+str(hstart)+"_"+str(hstop+1)+"/cosmo/output/"
+        cosmo_out = "/scratch/snx3000/parsenov/ctdas/"+abs_start_time+"_"+str(hstart)+"_"+str(hstop+1)+"/cosmo/output/"
+        hhl_cosmo_out = "/scratch/snx3000/parsenov/ctdas/"+abs_start_time+"_0_168/cosmo/output/"
         cosmo_save = "/store/empa/em05/parsenov/cosmo_data/"
-        hhl_fn = cosmo_out+'lffd'+dacycle['time.start'].strftime('%Y%m%d%H')+'c.nc'
+        hhl_fn = hhl_cosmo_out+'lffd'+abs_start_time+'c.nc'
         cdo.selname("HHL", input = hhl_fn, output = cosmo_out+"hhl.nc")
 
         for ens in range(0,ensnum):
             ens = str(ens).zfill(3)
             files2cat=[]
-            for dt in rrule.rrule(rrule.HOURLY, dtstart=dacycle['time.start']+timedelta(hours=hstart), until=dacycle['time.start']+timedelta(hours=hstop)):
+            for dt in rrule.rrule(rrule.HOURLY, dtstart=to_datetime(dacycle['abs.time.start'])+timedelta(hours=hstart), until=to_datetime(dacycle['abs.time.start'])+timedelta(hours=hstop)):
                 dt=dt.strftime('%Y%m%d%H')
                 logging.info('Extracting output for ens %s, time %s' % (str(ens),str(dt)))
                 co2_in_fn = cosmo_out+'lffd'+dt+'.nc'

template.rc

@@ -28,15 +28,20 @@
 !
 ! The time for which to start and end the data assimilation experiment in format YYYY-MM-DD HH:MM:SS
 
-time.start          : 2013-04-01 00:00:00
-time.finish         : 2013-04-07 23:00:00
-time.end            : 2013-04-07 23:00:00
+! the following 3 lines are for initial start
+!time.start          : 2013-04-01 00:00:00
+!time.finish         : 2013-04-07 23:00:00
+!time.end            : 2013-04-07 23:00:00
+
+time.start          : 2013-04-08 00:00:00
+time.finish         : 2013-04-14 23:00:00
+time.end            : 2013-04-14 23:00:00
 
 abs.time.start          : 2013-04-01 00:00:00
 
 ! Whether to restart the CTDAS system from a previous cycle, or to start the sequence fresh. Valid entries are T/F/True/False/TRUE/FALSE
 
-time.restart        : F
+time.restart        : T
 da.restart.tstamp   : 2013-04-01 00:00:00
 
 ! The length of a cycle is given in days, such that the integer 7 denotes the typically used weekly cycle. Valid entries are integers > 1