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medema-group
BiG-SCAPE
Commits
ee829441
Commit
ee829441
authored
Jun 03, 2021
by
Jorge Navarro Muñoz
Browse files
Build Docker image using latest Pfam 34
Bump version to 1.1.2
parent
a55f3693
Changes
3
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Dockerfile
View file @
ee829441
...
@@ -15,7 +15,7 @@ ENV PATH /usr/local/envs/bigscape/bin:$PATH
...
@@ -15,7 +15,7 @@ ENV PATH /usr/local/envs/bigscape/bin:$PATH
ENV
PATH /usr/src/BiG-SCAPE:$PATH
ENV
PATH /usr/src/BiG-SCAPE:$PATH
RUN
cd
BiG-SCAPE
\
RUN
cd
BiG-SCAPE
\
&&
wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam3
2
.0/Pfam-A.hmm.gz
\
&&
wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/releases/Pfam3
4
.0/Pfam-A.hmm.gz
\
&&
gunzip
Pfam-A.hmm.gz
\
&&
gunzip
Pfam-A.hmm.gz
\
&&
source
activate bigscape
\
&&
source
activate bigscape
\
&&
hmmpress Pfam-A.hmm
\
&&
hmmpress Pfam-A.hmm
\
...
...
bigscape.py
View file @
ee829441
...
@@ -2104,7 +2104,7 @@ def CMD_parser():
...
@@ -2104,7 +2104,7 @@ def CMD_parser():
domain_includelist.txt file"
,
default
=
False
,
domain_includelist.txt file"
,
default
=
False
,
action
=
"store_true"
)
action
=
"store_true"
)
parser
.
add_argument
(
"--version"
,
action
=
"version"
,
version
=
"%(prog)s 1.1 (2021-0
5-25
)"
)
parser
.
add_argument
(
"--version"
,
action
=
"version"
,
version
=
"%(prog)s 1.1
.2
(2021-0
6-03
)"
)
return
parser
.
parse_args
()
return
parser
.
parse_args
()
...
...
run_bigscape
View file @
ee829441
...
@@ -5,7 +5,7 @@ if [[ $# -eq 0 || $1 == "-h" || $1 == "--help" || $1 == "--version" ]]; then
...
@@ -5,7 +5,7 @@ if [[ $# -eq 0 || $1 == "-h" || $1 == "--help" || $1 == "--version" ]]; then
--detach
=
false
\
--detach
=
false
\
--rm
\
--rm
\
--user
=
$(
id
-u
)
:
$(
id
-g
)
\
--user
=
$(
id
-u
)
:
$(
id
-g
)
\
docker-registry.wur.nl/medema-group/big-scape:v1.
0.1
\
docker-registry.wur.nl/medema-group/big-scape:v1.
1.2
\
$@
$@
else
else
set
-o
errexit
set
-o
errexit
...
...
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