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medema-group
BiG-SCAPE
Commits
c1003168
Commit
c1003168
authored
Jun 07, 2019
by
Jorge Navarro Muñoz
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Small update to classification rules
- Added transAT-PKS-like to the set of rules (PKSother)
parent
36fb0b23
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functions.py
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functions.py
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c1003168
...
...
@@ -470,7 +470,8 @@ def sort_bgc(product):
pks1_products
=
{
't1pks'
,
'T1PKS'
}
pksother_products
=
{
'transatpks'
,
't2pks'
,
't3pks'
,
'otherks'
,
'hglks'
,
'transAT-PKS'
,
'T2PKS'
,
'T3PKS'
,
'PKS-like'
,
'hglE-KS'
}
'transAT-PKS'
,
'transAT-PKS-like'
,
'T2PKS'
,
'T3PKS'
,
'PKS-like'
,
'hglE-KS'
}
nrps_products
=
{
'nrps'
,
'NRPS'
,
'NRPS-like'
,
'thioamide-NRP'
}
ripps_products
=
{
'lantipeptide'
,
'thiopeptide'
,
'bacteriocin'
,
'linaridin'
,
'cyanobactin'
,
'glycocin'
,
'LAP'
,
'lassopeptide'
,
...
...
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