diff --git a/whokaryote_scripts/size_filter.py b/whokaryote_scripts/size_filter.py index 6e9cecf92a35ea35c4e22cc1630c2bbfa0ee388f..3145d0b37924d3556624dca91c1e7e80ed7b1d02 100644 --- a/whokaryote_scripts/size_filter.py +++ b/whokaryote_scripts/size_filter.py @@ -48,13 +48,8 @@ def split_fasta_taxonomy(fasta_file, outdir): prok_headers_list = prok_headers.split("\n") # list of all prokaryote headers prok_file.close() - counter = 0 with open(fasta_file, "r") as f: for title, seq in SimpleFastaParser(f): - if counter > 10: - print("breaking") - break - counter += 1 title_id = title.split(" ")[0] if title_id in euk_headers_list: with open(os.path.join(outdir, "eukaryotes.fasta"), "a") as euk: