Commits · master · Li, Yuze / BIF_minor_thesis

29 Jan, 2021 1 commit
- CLEAR redundent files, rearrange folders · a50e2e4a
  Li, Yuze authored Jan 29, 2021
  
  a50e2e4a
22 Jan, 2021 1 commit
- final update · a9559add
  Li, Yuze authored Jan 22, 2021
  
  a9559add
30 Nov, 2020 3 commits
- ADD script generate expanded regions · 242e933e
  Li, Yuze authored Nov 30, 2020
  
  242e933e
- UPDATE script generating DNA shape features · 50d95ecb
  Li, Yuze authored Nov 30, 2020
  
  50d95ecb
- ADD script generating gene function feature · 613e62a4
  Li, Yuze authored Nov 30, 2020
  
  613e62a4
18 Nov, 2020 2 commits
- UPDATE autocorrelation test results and visualization · b0bb24a4
  Li, Yuze authored Nov 18, 2020
  
  b0bb24a4
- ADD script preparing data for autocorrelation analysis · 318b0d54
  Li, Yuze authored Nov 18, 2020
  
  318b0d54
13 Nov, 2020 2 commits
- Merge branch 'master' of git.wur.nl:li286/bif_minor_thesis · 681cd6c4
  Li, Yuze authored Nov 14, 2020
  
  681cd6c4
- BUG FIX due to change of module function names · e4fa3465
  Li, Yuze authored Nov 14, 2020
  
  e4fa3465
11 Nov, 2020 1 commit
- UPDATE script generating epigenetic features · f9407b4b
  Li, Yuze authored Nov 11, 2020
  
  f9407b4b
10 Nov, 2020 4 commits
- UPDATE workflow chart · bc491e65
  Li, Yuze authored Nov 10, 2020
  
  bc491e65
- UPDATE workflow chart · 8805cbc3
  Li, Yuze authored Nov 10, 2020
  
  8805cbc3
- ADD draw.io workflow chart · b21a789f
  Li, Yuze authored Nov 10, 2020
  
  b21a789f
- ADD draft script for generating epigenetic features · a4e7e342
  Li, Yuze authored Nov 10, 2020
  
  a4e7e342
09 Nov, 2020 4 commits
- UPDATE fit for more versatile jobs · 2ad5873b
  Li, Yuze authored Nov 10, 2020
  
  2ad5873b
- ADD script to generate distances to TSS and TTS features · bd5bb4d6
  Li, Yuze authored Nov 09, 2020
  
  bd5bb4d6
- ADD script to generate genome annoation features · 9ed20f22
  Li, Yuze authored Nov 09, 2020
  
  9ed20f22
- ADD script to make DNA shape features · 83623cf9
  Li, Yuze authored Nov 09, 2020
  
  83623cf9
04 Nov, 2020 4 commits
- UPDATE split the dinucleotide counting script to two · b0cc425c
  Li, Yuze authored Nov 05, 2020
  
  b0cc425c
- ADD a small shell script the extract sampled recombination rates · b359eb5d
  Li, Yuze authored Nov 04, 2020
  
  b359eb5d
- ADD script for counting dinucleotide frequencies · 18c9f3f9
  Li, Yuze authored Nov 04, 2020
  
  18c9f3f9
- ADD script to generate continuous regions in a BED file · 5d3d3390
  Li, Yuze authored Nov 04, 2020
  
  5d3d3390
03 Nov, 2020 1 commit
- UPDATE finishing the script to sample regions with spacing · f1533b4c
  Li, Yuze authored Nov 03, 2020
  
  f1533b4c
02 Nov, 2020 4 commits
- ADD the key function for spaced sampling · 283ac3f3
  Li, Yuze authored Nov 03, 2020
  
  283ac3f3
- ADD partly developed script for sampling spaced regions · 186901fb
  Li, Yuze authored Nov 02, 2020
  
  186901fb
- ADD awk line to format TAIR10 genome fasta file · 144e10d9
  Li, Yuze authored Nov 02, 2020
  
  144e10d9
- UPDATE tuning and nested CV functions · 84fb927a
  Li, Yuze authored Nov 02, 2020
  
  84fb927a
25 Oct, 2020 2 commits
- FIX problem in sorting chromosome names · 2b8bf726
  Li, Yuze authored Oct 25, 2020
  
  2b8bf726
- UPDATE use a function to wrap up the data conversion · 0000af85
  Li, Yuze authored Oct 25, 2020
  
  0000af85
22 Oct, 2020 1 commit
- ADD script to train and validate RF model · 7adbdf8b
  Li, Yuze authored Oct 22, 2020
  
  7adbdf8b
20 Oct, 2020 1 commit
- DEBUG scripts · b5cd3d2a
  Li, Yuze authored Oct 20, 2020
  
  b5cd3d2a
19 Oct, 2020 2 commits
- ADD script for sample recombination rates at required regions, minor UPDATEs to previous scripts · 8c96f218
  Li, Yuze authored Oct 20, 2020
  
  8c96f218
- ADD script extracts window positions and used features from CO data · 53da6811
  Li, Yuze authored Oct 19, 2020
  
  53da6811
14 Oct, 2020 2 commits
- UPDATE resize figures · c9fe4f06
  Li, Yuze authored Oct 14, 2020
  
  c9fe4f06
- UPDATE resize figures · b02d73cd
  Li, Yuze authored Oct 14, 2020
  
  b02d73cd
13 Oct, 2020 2 commits
- UPDATE analysis for rice · 600fe5d7
  Li, Yuze authored Oct 14, 2020
  
  600fe5d7
- UPDATE analysis for rice · ac404fda
  Li, Yuze authored Oct 13, 2020
  
  ac404fda
12 Oct, 2020 3 commits
- UPDATE to better code format · ef29d66d
  Li, Yuze authored Oct 13, 2020
  
  ef29d66d
- UPDATE to better code format · 1b5afdd2
  Li, Yuze authored Oct 12, 2020
  
  1b5afdd2
- FIX problem in autocorrelation · 9ce4b6ad
  Li, Yuze authored Oct 12, 2020
  
  9ce4b6ad