Commits · master · Lannoy, Carlos de / baseLess

03 May, 2022 1 commit
- additional args for inference · 42c439e1
  Carlos de Lannoy authored May 03, 2022
  
  42c439e1
10 Apr, 2022 3 commits
- remove coa detection directory · a0ad25a4
  Lannoy, Carlos de authored Apr 11, 2022
  
  a0ad25a4
- add script for conversion h5 to trt · 055b870b
  Lannoy, Carlos de authored Apr 11, 2022
  
  055b870b
- inference memory and batch size are arguments · b359af78
  Lannoy, Carlos de authored Apr 10, 2022
  
  b359af78
04 Apr, 2022 1 commit
- refactoring for jetson compatability · 8bdad70b
  Lannoy, Carlos de authored Apr 04, 2022
  
  8bdad70b
28 Mar, 2022 1 commit
- refactor path parsing functions · a8049062
  Lannoy, Carlos de authored Mar 28, 2022
  
  a8049062
14 Feb, 2022 1 commit
- bug fixes · 74fa6cb8
  Lannoy, Carlos de authored Feb 14, 2022
  
  74fa6cb8
02 Feb, 2022 1 commit
- misc · ba83bc11
  Carlos de Lannoy authored Feb 02, 2022
  
  ba83bc11
30 Jan, 2022 1 commit
- bug fixes abundance analysis · afad78e4
  Lannoy, Carlos de authored Jan 30, 2022
  
  afad78e4
27 Jan, 2022 1 commit
- abundance validation: allow multiple samples per species · 5911a83d
  Lannoy, Carlos de authored Jan 27, 2022
  
  5911a83d
26 Jan, 2022 1 commit
- kmer size as option · e06ba693
  Carlos de Lannoy authored Jan 26, 2022
  
  e06ba693
21 Jan, 2022 20 commits
- hacky solution to memory issues with long squiggles, small stuff · 7267e0f8
  Lannoy, Carlos de authored Jan 22, 2022
  
  7267e0f8
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · a9a2f738
  Carlos de Lannoy authored Jan 21, 2022
  
  a9a2f738
- fixes · c7f8551e
  Carlos de Lannoy authored Jan 21, 2022
  
  c7f8551e
- Complete wrapper to generate in silico squiggles · 4a3dcb4e
  Noordijk, Ben authored Jan 21, 2022
  
  4a3dcb4e
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 2bd98cc8
  Noordijk, Ben authored Jan 21, 2022
  
  2bd98cc8
- In silico mixtures can now be made · c9b50ef2
  Noordijk, Ben authored Jan 21, 2022
  
  c9b50ef2
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 39b2a868
  Carlos de Lannoy authored Jan 21, 2022
  
  39b2a868
- coa training works · bf13b447
  Carlos de Lannoy authored Jan 21, 2022
  
  bf13b447
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · 9eda77b2
  Noordijk, Ben authored Jan 21, 2022
```
# Conflicts:
#	coa_detection/AbfData.py
```
  9eda77b2
- Started script to make in silico mixtures · b33e799f
  Noordijk, Ben authored Jan 21, 2022
  
  b33e799f
- Added support for unfiltered examples · 259a7cc8
  Noordijk, Ben authored Jan 21, 2022
  
  259a7cc8
- allow randomly drawing 1 example · 214a9635
  Carlos de Lannoy authored Jan 21, 2022
  
  214a9635
- Merge branch 'coa_analysis' of git.wur.nl:lanno001/baseless into coa_analysis · f8bb3c9e
  Carlos de Lannoy authored Jan 21, 2022
```
 Conflicts:
	coa_detection/AbfData.py
```
  f8bb3c9e
- db building works · b29decf4
  Carlos de Lannoy authored Jan 21, 2022
  
  b29decf4
- Added ability to extract unfiltered data · 2bf73b7d
  Noordijk, Ben authored Jan 21, 2022
  
  2bf73b7d
- Test test · 21539ecb
  Noordijk, Ben authored Jan 21, 2022
  
  21539ecb
- Merge remote-tracking branch 'origin/coa_analysis' into coa_analysis · b032b870
  Noordijk, Ben authored Jan 21, 2022
```
# Conflicts:
#	coa_detection/AbfData.py
```
  b032b870
- Added get_pos and get_neg methods · 77b82102
  Noordijk, Ben authored Jan 21, 2022
  
  77b82102
- ABF parsing, plotting, and filtering · b9d3f152
  Noordijk, Ben authored Jan 21, 2022
  
  b9d3f152
- cOA detection general code structure · aa447c3e
  Carlos de Lannoy authored Jan 21, 2022
  
  aa447c3e
20 Jan, 2022 1 commit
- start abf reading functionality · 201ec87f
  Lannoy, Carlos de authored Jan 20, 2022
  
  201ec87f
18 Jan, 2022 1 commit
- update abundance estimation benchmark · b2ff940a
  Carlos de Lannoy authored Jan 18, 2022
  
  b2ff940a
16 Jan, 2022 1 commit
- abundance result analysis · c358f375
  Lannoy, Carlos de authored Jan 16, 2022
  
  c358f375
12 Jan, 2022 2 commits
- multiple samping abundance estimation benchmark · 81a92966
  Carlos de Lannoy authored Jan 12, 2022
  
  81a92966
- multiple samping abundance estimation benchmark · fd6276e3
  Carlos de Lannoy authored Jan 12, 2022
  
  fd6276e3
07 Jan, 2022 1 commit
- model accuracy filtering · 36125033
  Lannoy, Carlos de authored Jan 07, 2022
  
  36125033
28 Dec, 2021 1 commit
- small fixes abundance estimation · 22b33bab
  Lannoy, Carlos de authored Dec 29, 2021
  
  22b33bab
27 Dec, 2021 1 commit
- add abundance estimation mode · 3f6cd45b
  Lannoy, Carlos de authored Dec 28, 2021
  
  3f6cd45b
21 Dec, 2021 1 commit
- batch processing · a1aa952f
  Lannoy, Carlos de authored Dec 22, 2021
  
  a1aa952f