Commits · direct_align · Kautsar, Satria / BiG-SCAPE · GitLab

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Nov 24, 2016
- mibig pfam domains and sequences formatted in a way that distance can read it · 2db6c823
  Emzo de los Santos authored 8 years ago
  
  2db6c823
- experimental module for comparing a new cluster to mibig database, seems to be... · 487a05f9
  Emzo de los Santos authored 8 years ago
  487a05f9
Nov 23, 2016
- changed parse fasta to fix bug in big-scape to accept non-standard amino acids · ba57fb79
  Emzo de los Santos authored 8 years ago
  
  ba57fb79
Nov 18, 2016
- ** bigscape.py · 5f8e7033
  Emzo de los Santos authored 8 years ago
  5f8e7033
- Bugfix in DDS sub-component weighting logic · 26a3c5a2
  Jorge Navarro Muñoz authored 8 years ago
  26a3c5a2
Nov 04, 2016
- Important changes to DDS index · 85ca13b8
  Jorge Navarro Muñoz authored 8 years ago
  85ca13b8
Nov 02, 2016
- Fixed a badly resolved conflict from the merging · 67f17d5d
  Jorge Navarro Muñoz authored 8 years ago
  
  67f17d5d
- minor update to README · f1f55621
  Jorge Navarro Muñoz authored 8 years ago
  
  f1f55621
- --force_hmmscan will also force BiG-SCAPE to re-process domtable files · 12dc97d6
  Jorge Navarro Muñoz authored 8 years ago
  12dc97d6
- Updated README file · b79820ba
  Jorge Navarro Muñoz authored 8 years ago
  
  b79820ba
- Merge branch 'mp-hmm' into 'master' · f4165c1e
  Jorge Navarro Muñoz authored 8 years ago
  f4165c1e
- Merge branch 'master' into 'mp-hmm' · 5511cb25
  Jorge Navarro Muñoz authored 8 years ago
  5511cb25
Nov 01, 2016
- Make Emzo's workflow default · 07feda76
  Jorge Navarro Muñoz authored 8 years ago
  07feda76
- Try to catch problems in calc_perc_identity due to sequences' lengths mismatch · 8fef3741
  Jorge Navarro Muñoz authored 8 years ago
  8fef3741
Oct 31, 2016
- More preparations in order to integrate new workflow with Emzo's ideas · 6b8fc78d
  Jorge Navarro Muñoz authored 8 years ago
  6b8fc78d
Oct 10, 2016
- Preparing for branch merging. · 30fc9235
  Jorge Navarro Muñoz authored 8 years ago
  30fc9235
Oct 05, 2016
- Be more clear if there is a problem calculating seq. identity · b12bfb7d
  Jorge Navarro Muñoz authored 8 years ago
  b12bfb7d
Oct 03, 2016
- fixed bugs from duplicate genbanks issue by reformatting samples/cluster data... · 9a2e5492
  Emzo authored 8 years ago
  9a2e5492
Sep 14, 2016
- fixed bug that would cause index error if there were duplicate cluster names in multiple folders · 029241ff
  Emzo authored 8 years ago
  
  029241ff
- Catch an AssertionError exception in the initial validation of input files · 5f144ba6
  Jorge Navarro Muñoz authored 8 years ago
  
  5f144ba6
Sep 12, 2016
- wrote code for split process · 79699349
  Emzo authored 8 years ago
  
  79699349
Aug 16, 2016
- Merge branch 'master' of https://git.wageningenur.nl/medema-group/BiG-SCAPE · 311ac8dc
  Jorge Navarro Muñoz authored 8 years ago
  
  311ac8dc
- Cleaned up distance calculation. Also added basic check for anchorweight parameter · 6255ed77
  Jorge Navarro Muñoz authored 8 years ago
  
  6255ed77
- Fixed some typos in README · 0749ae3d
  Jorge Navarro Muñoz authored 8 years ago
  
  0749ae3d
Aug 04, 2016
- Forgot to add functions.py to the last commit · 0327fcfd
  Jorge Navarro Muñoz authored 8 years ago
  
  0327fcfd
- Bug fix in GK calculation: · 890f405f
  Jorge Navarro Muñoz authored 8 years ago
  890f405f
Aug 01, 2016
- Fix the calculation of sequence identity used in DDS: · 64acd729
  Jorge Navarro Muñoz authored 8 years ago
  64acd729
Jul 27, 2016
- Small optimization when calculating DMS dictionary: · b366f65a
  Jorge Navarro Muñoz authored 8 years ago
  b366f65a
Jul 26, 2016
- Don't delete domains folder if using skip_mafft. Plus, some comments in the parallelization part · bc8ba673
  Jorge Navarro Muñoz authored 8 years ago
  
  bc8ba673
Jul 19, 2016
- Slight update in README · 3fd6d850
  Jorge Navarro Muñoz authored 8 years ago
  
  3fd6d850
- Fixed some bugs in the GK calculation: · 69bbc420
  Jorge Navarro Muñoz authored 8 years ago
  69bbc420
- Specify location of Pfam files: · 858cdf27
  Jorge Navarro Muñoz authored 8 years ago
  858cdf27
Jul 12, 2016
- Small fixes in README's formatting · 483ccfb9
  Jorge Navarro Muñoz authored 8 years ago
  
  483ccfb9
Jul 11, 2016
- Updated README · d129fa41
  Jorge Navarro Muñoz authored 8 years ago
  
  d129fa41
- Added parameter --skip_mafft and a few other things: · 10e83013
  Jorge Navarro Muñoz authored 8 years ago
  10e83013
Jul 01, 2016
- Re-running with --skip_all was re-appending the last 2 columns to the network files · 7fcd5d83
  Jorge Navarro Muñoz authored 8 years ago
  
  7fcd5d83
Jun 30, 2016
- Fixed a crash when reporting networks with --include_dist_nodes parameter · af8578fc
  Jorge Navarro Muñoz authored 8 years ago
  af8578fc
Jun 29, 2016
- Handle case when .domtable file cannot be found · 6cd3db82
  Jorge Navarro Muñoz authored 8 years ago
  
  6cd3db82
- Filter gene clusters without domains. · 7fcbd484
  Jorge Navarro Muñoz authored 8 years ago
  7fcbd484
Jun 24, 2016
- Be more clear when getting gbk files fails · 364eccc9
  Jorge Navarro Muñoz authored 8 years ago
  
  364eccc9