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Aflitos, Saulo Alves / LRSIM
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Several data files associated with the analysis of SMILES strings from the MIBiG database
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Scripts and resources used for my MSc Thesis at the Bioinformatics chair group.
The goal this project is to create a pipeline that automates the secondary metabolite phylogenetic analysis of fungi to a certain extent.
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Calculate the diversity of your gene clusters! Using hmmscan to find the pfam domains. Jaccard, DDS, GK as distance metrics including sequence similarity as a modifier. It outputs tab delimited network files that can be visualized in Cytoscape.
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Visualize genes in a GenBank file as arrows in SVG format.
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Gebretsadkan, Samuel / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
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Lokhorst, Wouter / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)
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Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.
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Find SNPs in putative TFBS that change the expression of the nearby gene
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Here, we can share our common plans and thoughts
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