GitLab

Several data files associated with the analysis of SMILES strings from the MIBiG database

Biosynthetic Genes Similarity Clustering and Prospecting Engine.

Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard Index of domain types, Domain Sequence Similarity the Adjacency Index)

Visualize genes in a GenBank file as arrows in SVG format.

Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.

A concept for a BrAPI discovery node. Written in Python, Flask-based.

flow accumulation model made in R (and partly still in bash).

Spark standalone clusters on SLURM

AMOS is a collection of tools for genome assembly