Explore projects
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Aflitos, Saulo Alves / webmummer
MIT LicenseUpdated -
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Aflitos, Saulo Alves / kmasker2gff
MIT LicenseUpdated -
Visualize genes in a GenBank file as arrows in SVG format.
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Simulation pipeline for generation of artificial polyploid genomes, estimation of their haplotypes from Next Generation Sequencing data using HapTree, HapCompass and SDhap, and finally evaluation of the estimation accuracy.
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A concept for a BrAPI discovery node. Written in Python, Flask-based.
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Aflitos, Saulo Alves / LRSIM
MIT LicenseUpdated -
Kautsar, Satria / BiG-SCAPE
GNU Affero General Public License v3.0Biosynthetic Genes Similarity Clustering and Prospecting Engine.
Defines a distance metric between Gene Clusters using a combination of three indices (Jaccard index, a modified Domain Duplicate Score and the Goodman-Kruskal gamma function)
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Haplotype estimation tool for polyploids using NGS data of related individuals
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