From 1f04f859c96d9c155e1f1aaf424700790c688505 Mon Sep 17 00:00:00 2001
From: worku005 <dirk-jan.vanworkum@wur.nl>
Date: Wed, 8 Jan 2025 16:03:13 +0100
Subject: [PATCH] also show when node does not exist
---
src/main/java/nl/wur/bif/pantools/utils/Utils.java | 11 ++++++++---
1 file changed, 8 insertions(+), 3 deletions(-)
diff --git a/src/main/java/nl/wur/bif/pantools/utils/Utils.java b/src/main/java/nl/wur/bif/pantools/utils/Utils.java
index 0af62a900..0447200c7 100644
--- a/src/main/java/nl/wur/bif/pantools/utils/Utils.java
+++ b/src/main/java/nl/wur/bif/pantools/utils/Utils.java
@@ -1813,9 +1813,14 @@ public final class Utils {
} else {
Pantools.logger.info("Using homology groups provided by user.");
for (Long hmGroup : hmGroups) {
- Node hmNode = GRAPH_DB.getNodeById(hmGroup);
- test_if_correct_label(hmNode, HOMOLOGY_GROUP_LABEL, true);
- hmList.add(hmNode);
+ try {
+ Node hmNode = GRAPH_DB.getNodeById(hmGroup);
+ test_if_correct_label(hmNode, HOMOLOGY_GROUP_LABEL, true);
+ hmList.add(hmNode);
+ } catch (NotFoundException nfe) {
+ Pantools.logger.error("Homology group {} was not found.", hmGroup);
+ throw new RuntimeException(nfe);
+ }
}
}
return hmList;
--
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