Commit e7dbd818 authored by sauloal's avatar sauloal
Browse files

2012-10-25_13_00_01_02_00 :: 1 :: M => 1

parent 451a84ac
......@@ -132,7 +132,7 @@ if False:
# RULES TO CONVERT FROM NUCLEOTIDE TO BINARY AND BACK
tb = { 'A' : '00', 'C' : '01', 'G' : '10', 'T' : '11' }
bt = { '00': 'A', '01': 'C', '10': 'G', '11': 'T' }
bt = { '00': 'A' , '01': 'C' , '10': 'G' , '11': 'T' }
hashKeys = {}
......@@ -281,7 +281,7 @@ def loadSppIndex():
sys.stderr.write(" ERROR IN LINE: '"+line+"'\n")
sys.exit()
#sys.stderr.write(" SPP: "+vals[0]+" ID:"+vals[1]+"\n")
sppIndex[vals[0]] = vals[1]
sppIndex[ vals[0]] = vals[1]
sppRevIndex[vals[1]] = vals[0]
f.close()
......
rm -rf merger/*; ln spp.idx merger/; pbzip2 -dc sym.sort.bz2 | head | ./kmerDb.py put; find merger/db -type f | ./kmerDb.py get; pbzip2 -dc sym.sort.bz2 | head -30 | ./kmerDb.py put; find merger/db -type f | ./kmerDb.py get; pbzip2 -dc sym.sort.bz2 | head | ./kmerDb.py put;find merger/db -type f | ./kmerDb.py get;
find merger/db -type f | ./kmerDb.py get
rm -rf merger/*;
ln spp.idx merger/;
pbzip2 -dc sym.sort.bz2 | head | ./kmerDb.py put;
find merger/db -type f | ./kmerDb.py get;
pbzip2 -dc sym.sort.bz2 | head -30 | ./kmerDb.py put;
find merger/db -type f | ./kmerDb.py get;
pbzip2 -dc sym.sort.bz2 | head | ./kmerDb.py put;
find merger/db -type f | ./kmerDb.py get;
find merger/db -type f | ./kmerDb.py get
reset; ./threader.pl 2 dna './kmerDb.py put' sampleinput.sort.bz2
./kmerDb.py get merger/db/000/25d
echo merger/db/000/25d | ./kmerDb.py get
reset; time ./threader.pl 2 dna './kmerDb.py put' sampleinput.sort.bz2
reset; time ./threader.pl 2 dna './kmerDb.py put' /home/aflit001/nobackup/Data_0_mer/Heinz_Illumina.jf.sort.gz
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