A B C D E F G H I L M N O P Q R S T U V W X misc
| active | MaskCollection objects |
| active-method | Collection of Filter Rules |
| active-method | MaskCollection objects |
| active<- | MaskCollection objects |
| active<--method | Collection of Filter Rules |
| active<--method | MaskCollection objects |
| aggregate-method | External Data Frame |
| aggregate-method | The DataTable API |
| aggregate-method | Rle objects |
| aggregate-method | Simple and Compressed List Classes |
| aggregate-method | Vector objects |
| Annotated | Annotated class |
| Annotated-class | Annotated class |
| append-method | Collection of Filter Rules |
| append-method | MaskCollection objects |
| append-method | Vector objects |
| applyFun | Applying over spaces |
| applyFun-method | Applying over spaces |
| applyFun<- | Applying over spaces |
| applyFun<--method | Applying over spaces |
| applyParams | Applying over spaces |
| applyParams-method | Applying over spaces |
| applyParams<- | Applying over spaces |
| applyParams<--method | Applying over spaces |
| as.character-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.character-method | Rle objects |
| as.complex-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.complex-method | Rle objects |
| as.data.frame-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.data.frame-method | External Data Frame |
| as.data.frame-method | List of DataFrames |
| as.data.frame-method | GappedRanges objects |
| as.data.frame-method | Data on ranges |
| as.data.frame-method | Ranges objects |
| as.data.frame-method | List of Ranges |
| as.data.frame-method | Rle objects |
| as.data.frame-method | XVectorList objects |
| as.env | List objects |
| as.env-method | The DataTable API |
| as.env-method | List objects |
| as.env-method | Data on ranges |
| as.factor-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.factor-method | Rle objects |
| as.integer-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.integer-method | Ranges objects |
| as.integer-method | Rle objects |
| as.integer-method | XVector objects |
| as.list-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.list-method | List of IRanges and NormalIRanges |
| as.list-method | List objects |
| as.list-method | Matchings between Ranges |
| as.list-method | Simple and Compressed List Classes |
| as.logical-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.logical-method | Rle objects |
| as.matrix-method | Ranges objects |
| as.matrix-method | Matchings between Ranges |
| as.matrix-method | List of Matchings between Ranges |
| as.matrix-method | Views objects |
| as.numeric-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.numeric-method | Rle objects |
| as.numeric-method | XVector objects |
| as.raw-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.raw-method | Rle objects |
| as.raw-method | XVector objects |
| as.table-method | Matchings between Ranges |
| as.table-method | List of Matchings between Ranges |
| as.vector-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.vector-method | Rle objects |
| as.vector-method | XVector objects |
| as.vectorORfactor | Rle objects |
| as.vectorORfactor-method | Lists of Atomic Vectors in Natural and Rle Form |
| as.vectorORfactor-method | Rle objects |
| asNormalIRanges | IRanges utility functions |
| AtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
| Binning | Grouping objects |
| Binning-class | Grouping objects |
| breakInChunks | IRanges utility functions |
| by-method | The DataTable API |
| c-method | Collection of Filter Rules |
| c-method | GappedRanges objects |
| c-method | IRanges and NormalIRanges objects |
| c-method | Data on ranges |
| c-method | Rle objects |
| c-method | Simple and Compressed List Classes |
| c-method | Vector objects |
| c-method | XVector objects |
| c-method | XVectorList objects |
| cbind | The DataTable API |
| cbind-method | External Data Frame |
| cbind-method | List of DataFrames |
| cbind-method | The DataTable API |
| CharacterList | Lists of Atomic Vectors in Natural and Rle Form |
| CharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
| chartr-method | Lists of Atomic Vectors in Natural and Rle Form |
| chartr-method | Rle objects |
| class:Binning | Grouping objects |
| class:CompressedIRangesList | List of IRanges and NormalIRanges |
| class:CompressedNormalIRangesList | List of IRanges and NormalIRanges |
| class:DataFrame | External Data Frame |
| class:DataTable | The DataTable API |
| class:DataTableORNULL | The DataTable API |
| class:Dups | Grouping objects |
| class:GappedRanges | GappedRanges objects |
| class:GroupedIRanges | XVectorList objects |
| class:Grouping | Grouping objects |
| class:H2LGrouping | Grouping objects |
| class:IRanges | IRanges and NormalIRanges objects |
| class:IRangesList | List of IRanges and NormalIRanges |
| class:List | List objects |
| class:MaskCollection | MaskCollection objects |
| class:NormalIRanges | IRanges and NormalIRanges objects |
| class:NormalIRangesList | List of IRanges and NormalIRanges |
| class:Partitioning | Grouping objects |
| class:PartitioningByEnd | Grouping objects |
| class:PartitioningByWidth | Grouping objects |
| class:RangedData | Data on ranges |
| class:Ranges | Ranges objects |
| class:RangesList-class | List of Ranges |
| class:Rle | Rle objects |
| class:RleViews | The RleViews class |
| class:SimpleIRangesList | List of IRanges and NormalIRanges |
| class:SimpleNormalIRangesList | List of IRanges and NormalIRanges |
| class:SimpleRangesList-class | List of Ranges |
| class:SimpleViewsList | List of Views |
| class:Vector | Vector objects |
| class:Views | Views objects |
| class:ViewsList | List of Views |
| class:XDouble | XVector objects |
| class:XDoubleViews | The XDoubleViews class |
| class:XInteger | XVector objects |
| class:XIntegerViews | The XIntegerViews class |
| class:XRaw | XVector objects |
| class:XRawList | XRawList objects |
| class:XVector | XVector objects |
| class:XVectorList | XVectorList objects |
| coerce-method | Lists of Atomic Vectors in Natural and Rle Form |
| coerce-method | External Data Frame |
| coerce-method | List of DataFrames |
| coerce-method | GappedRanges objects |
| coerce-method | Grouping objects |
| coerce-method | IRanges and NormalIRanges objects |
| coerce-method | IRanges utility functions |
| coerce-method | List of IRanges and NormalIRanges |
| coerce-method | Interval Search Trees |
| coerce-method | List objects |
| coerce-method | MaskCollection objects |
| coerce-method | Data on ranges |
| coerce-method | Selection of ranges and columns |
| coerce-method | List of Ranges |
| coerce-method | Matchings between Ranges |
| coerce-method | Rle objects |
| coerce-method | The RleViews class |
| coerce-method | List of RleViews |
| coerce-method | Views objects |
| coerce-method | XVector objects |
| collapse | MaskCollection objects |
| collapse-method | MaskCollection objects |
| colnames-method | External Data Frame |
| colnames-method | List of DataFrames |
| colnames-method | Data on ranges |
| colnames-method | Selection of ranges and columns |
| colnames<--method | External Data Frame |
| colnames<--method | List of DataFrames |
| colnames<--method | Data on ranges |
| colnames<--method | Selection of ranges and columns |
| columnMetadata | List of DataFrames |
| columnMetadata-method | List of DataFrames |
| columnMetadata-method | Data on ranges |
| columnMetadata<- | List of DataFrames |
| columnMetadata<--method | List of DataFrames |
| columnMetadata<--method | Data on ranges |
| compact | Object compaction |
| compact-method | Object compaction |
| complete.cases-method | The DataTable API |
| Complex-method | Lists of Atomic Vectors in Natural and Rle Form |
| Complex-method | Rle objects |
| ComplexList | Lists of Atomic Vectors in Natural and Rle Form |
| ComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedComplexList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedIRangesList | List of IRanges and NormalIRanges |
| CompressedIRangesList-class | List of IRanges and NormalIRanges |
| CompressedList | Simple and Compressed List Classes |
| CompressedList-class | Simple and Compressed List Classes |
| CompressedLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedNormalIRangesList | List of IRanges and NormalIRanges |
| CompressedNormalIRangesList-class | List of IRanges and NormalIRanges |
| CompressedNumericList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedRawList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedRleList | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
| CompressedSplitDataFrameList-class | List of DataFrames |
| cor-method | Lists of Atomic Vectors in Natural and Rle Form |
| cor-method | Rle objects |
| countOverlaps | Interval Search Trees |
| countOverlaps-method | Interval Search Trees |
| countOverlaps-method | Views objects |
| countOverlaps-method | List of Views |
| cov-method | Lists of Atomic Vectors in Natural and Rle Form |
| cov-method | Rle objects |
| coverage | Coverage across a set of ranges |
| coverage-method | Coverage across a set of ranges |
| cummax-method | Lists of Atomic Vectors in Natural and Rle Form |
| cummin-method | Lists of Atomic Vectors in Natural and Rle Form |
| cumprod-method | Lists of Atomic Vectors in Natural and Rle Form |
| cumsum-method | Lists of Atomic Vectors in Natural and Rle Form |
| DataFrame | External Data Frame |
| DataFrame-class | External Data Frame |
| DataFrameList | List of DataFrames |
| DataFrameList-class | List of DataFrames |
| DataTable | The DataTable API |
| DataTable-API | The DataTable API |
| DataTable-class | The DataTable API |
| DataTable-stats | Statistical modeling with DataTable |
| DataTableORNULL | The DataTable API |
| DataTableORNULL-class | The DataTable API |
| desc | MaskCollection objects |
| desc-method | MaskCollection objects |
| desc<- | MaskCollection objects |
| desc<--method | MaskCollection objects |
| diff-method | Lists of Atomic Vectors in Natural and Rle Form |
| diff-method | Rle objects |
| dim-method | List of DataFrames |
| dim-method | The DataTable API |
| dim-method | Matchings between Ranges |
| dimnames-method | List of DataFrames |
| dimnames-method | The DataTable API |
| dimnames<--method | List of DataFrames |
| dimnames<--method | The DataTable API |
| disjoin | Making Ranges disjoint |
| disjoin-method | RangesList utility functions |
| disjoin-method | Making Ranges disjoint |
| disjointBins | Making Ranges disjoint |
| disjointBins-method | Making Ranges disjoint |
| distance | Ranges utility functions |
| distance-method | Ranges utility functions |
| distanceToNearest | Nearest neighbor finding |
| distanceToNearest-method | Nearest neighbor finding |
| duplicated-method | Grouping objects |
| duplicated-method | Ranges comparison |
| Dups | Grouping objects |
| Dups-class | Grouping objects |
| elementLengths | List objects |
| elementLengths-method | GappedRanges objects |
| elementLengths-method | List objects |
| elementLengths-method | Data on ranges |
| elementLengths-method | Ranges objects |
| elementLengths-method | Views objects |
| elementMetadata | Vector objects |
| elementMetadata-method | Vector objects |
| elementMetadata<- | Vector objects |
| elementMetadata<--method | Vector objects |
| elementType | List objects |
| elementType-method | List objects |
| end-method | GappedRanges objects |
| end-method | Grouping objects |
| end-method | List of IRanges and NormalIRanges |
| end-method | Interval Search Trees |
| end-method | Data on ranges |
| end-method | Ranges objects |
| end-method | List of Ranges |
| end-method | Rle objects |
| end-method | Views objects |
| end-method | List of Views |
| end<- | Ranges objects |
| end<--method | IRanges and NormalIRanges objects |
| end<--method | Data on ranges |
| end<--method | List of Ranges |
| end<--method | Views objects |
| endoapply | Endomorphisms via application of a function over an object's elements |
| endoapply-method | List objects |
| endoapply-method | Data on ranges |
| endoapply-method | Simple and Compressed List Classes |
| endoapply-method | Endomorphisms via application of a function over an object's elements |
| eval | List objects |
| eval-method | Collection of Filter Rules |
| eval-method | List objects |
| evalSeparately | Collection of Filter Rules |
| evalSeparately-method | Collection of Filter Rules |
| Filter-method | List objects |
| FilterRules | Collection of Filter Rules |
| filterRules | Applying over spaces |
| FilterRules-class | Collection of Filter Rules |
| filterRules-method | Applying over spaces |
| filterRules<- | Applying over spaces |
| filterRules<--method | Applying over spaces |
| Find-method | List objects |
| findOverlaps | Interval Search Trees |
| findOverlaps-method | Interval Search Trees |
| findOverlaps-method | Views objects |
| findOverlaps-method | List of Views |
| findRange | Rle objects |
| findRange-method | Rle objects |
| findRun | Rle objects |
| findRun-method | Rle objects |
| first | Ranges objects |
| first-method | Ranges objects |
| flank | Ranges utility functions |
| flank-method | Ranges utility functions |
| flank-method | RangesList utility functions |
| follow | Nearest neighbor finding |
| follow-method | Nearest neighbor finding |
| GappedRanges | GappedRanges objects |
| GappedRanges-class | GappedRanges objects |
| gaps | Set operations on IRanges objects |
| gaps-method | Set operations on IRanges objects |
| gaps-method | MaskCollection objects |
| gaps-method | RangesList utility functions |
| gaps-method | Views objects |
| GroupedIRanges | XVectorList objects |
| GroupedIRanges-class | XVectorList objects |
| Grouping | Grouping objects |
| Grouping-class | Grouping objects |
| grouplength | Grouping objects |
| grouplength-method | Grouping objects |
| grouprank | Grouping objects |
| grouprank-method | Grouping objects |
| gsub-method | Lists of Atomic Vectors in Natural and Rle Form |
| gsub-method | Rle objects |
| H2LGrouping | Grouping objects |
| H2LGrouping-class | Grouping objects |
| head-method | The DataTable API |
| head-method | Vector objects |
| high2low | Grouping objects |
| high2low-method | Grouping objects |
| ifelse-method | Rle objects |
| IntegerList | Lists of Atomic Vectors in Natural and Rle Form |
| IntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
| intersect | Set operations on IRanges objects |
| intersect-method | Set operations on IRanges objects |
| intersect-method | RangesList utility functions |
| IntervalTree | Interval Search Trees |
| IntervalTree-class | Interval Search Trees |
| IQR-method | Lists of Atomic Vectors in Natural and Rle Form |
| IQR-method | Rle objects |
| IRanges | The IRanges constructor and supporting functions |
| IRanges-class | IRanges and NormalIRanges objects |
| IRanges-constructor | The IRanges constructor and supporting functions |
| IRanges-setops | Set operations on IRanges objects |
| IRanges-utils | IRanges utility functions |
| IRangesList | List of IRanges and NormalIRanges |
| IRangesList-class | List of IRanges and NormalIRanges |
| is.na-method | Lists of Atomic Vectors in Natural and Rle Form |
| is.na-method | The DataTable API |
| is.na-method | Rle objects |
| is.unsorted-method | Rle objects |
| isConstant | Test if an atomic vector or array is constant |
| isConstant-method | Test if an atomic vector or array is constant |
| isDisjoint | Ranges objects |
| isDisjoint-method | List of IRanges and NormalIRanges |
| isDisjoint-method | Ranges objects |
| isEmpty | List objects |
| isEmpty-method | IRanges and NormalIRanges objects |
| isEmpty-method | List objects |
| isEmpty-method | Ranges objects |
| isEmpty-method | Simple and Compressed List Classes |
| isNormal | Ranges objects |
| isNormal-method | IRanges and NormalIRanges objects |
| isNormal-method | List of IRanges and NormalIRanges |
| isNormal-method | Ranges objects |
| iteratorFun | Applying over spaces |
| iteratorFun-method | Applying over spaces |
| iteratorFun<- | Applying over spaces |
| iteratorFun<--method | Applying over spaces |
| lapply-method | Lists of Atomic Vectors in Natural and Rle Form |
| lapply-method | List objects |
| lapply-method | Data on ranges |
| lapply-method | Simple and Compressed List Classes |
| last | Ranges objects |
| last-method | Ranges objects |
| length-method | GappedRanges objects |
| length-method | Grouping objects |
| length-method | Interval Search Trees |
| length-method | MaskCollection objects |
| length-method | Data on ranges |
| length-method | Ranges objects |
| length-method | Matchings between Ranges |
| length-method | Rle objects |
| length-method | Simple and Compressed List Classes |
| length-method | Views objects |
| length-method | XVector objects |
| length-method | XVectorList objects |
| length<--method | Grouping objects |
| levels-method | Rle objects |
| levels<--method | Rle objects |
| List | List objects |
| List-class | List objects |
| LogicalList | Lists of Atomic Vectors in Natural and Rle Form |
| LogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
| low2high | Grouping objects |
| low2high-method | Grouping objects |
| mad-method | Lists of Atomic Vectors in Natural and Rle Form |
| mad-method | Rle objects |
| Map | List objects |
| Map-method | List objects |
| mapply | List objects |
| mapply-method | List objects |
| Mask | MaskCollection objects |
| MaskCollection | MaskCollection objects |
| MaskCollection-class | MaskCollection objects |
| MaskCollection.show_frame | MaskCollection objects |
| maskedratio | MaskCollection objects |
| maskedratio-method | MaskCollection objects |
| maskedwidth | MaskCollection objects |
| maskedwidth-method | MaskCollection objects |
| match-method | Lists of Atomic Vectors in Natural and Rle Form |
| match-method | Interval Search Trees |
| match-method | Rle objects |
| match-method | Views objects |
| match-method | List of Views |
| matchMatrix | Matchings between Ranges |
| matchMatrix-method | Matchings between Ranges |
| Math-method | Lists of Atomic Vectors in Natural and Rle Form |
| Math-method | Rle objects |
| Math2-method | Lists of Atomic Vectors in Natural and Rle Form |
| Math2-method | Rle objects |
| max-method | IRanges and NormalIRanges objects |
| max-method | List of IRanges and NormalIRanges |
| max-method | MaskCollection objects |
| max-method | Utility functions and numeric summary of Views of numerics |
| mean-method | Lists of Atomic Vectors in Natural and Rle Form |
| mean-method | Rle objects |
| mean-method | Utility functions and numeric summary of Views of numerics |
| median-method | Lists of Atomic Vectors in Natural and Rle Form |
| median-method | Rle objects |
| members | Grouping objects |
| members-method | Grouping objects |
| mendoapply | Endomorphisms via application of a function over an object's elements |
| mendoapply-method | List objects |
| mendoapply-method | Simple and Compressed List Classes |
| mendoapply-method | Endomorphisms via application of a function over an object's elements |
| merge-method | RangesList utility functions |
| metadata | Annotated class |
| metadata-method | Annotated class |
| metadata<- | Annotated class |
| metadata<--method | Annotated class |
| mid | Ranges objects |
| mid-method | Ranges objects |
| min-method | IRanges and NormalIRanges objects |
| min-method | List of IRanges and NormalIRanges |
| min-method | MaskCollection objects |
| min-method | Utility functions and numeric summary of Views of numerics |
| mseqapply | Apply function and cast to Vector |
| na.exclude | The DataTable API |
| na.exclude-method | The DataTable API |
| na.omit | The DataTable API |
| na.omit-method | The DataTable API |
| names-method | GappedRanges objects |
| names-method | Grouping objects |
| names-method | IRanges and NormalIRanges objects |
| names-method | MaskCollection objects |
| names-method | Data on ranges |
| names-method | Simple and Compressed List Classes |
| names-method | Views objects |
| names-method | XVectorList objects |
| names<--method | GappedRanges objects |
| names<--method | Grouping objects |
| names<--method | IRanges and NormalIRanges objects |
| names<--method | MaskCollection objects |
| names<--method | Data on ranges |
| names<--method | Simple and Compressed List Classes |
| names<--method | Views objects |
| names<--method | XVectorList objects |
| narrow | Ranges utility functions |
| narrow-method | MaskCollection objects |
| narrow-method | Ranges utility functions |
| narrow-method | RangesList utility functions |
| narrow-method | Views objects |
| narrow-method | XVectorList objects |
| nchar-method | Lists of Atomic Vectors in Natural and Rle Form |
| nchar-method | Rle objects |
| NCOL-method | The DataTable API |
| ncol-method | External Data Frame |
| ncol-method | List of DataFrames |
| ncol-method | Data on ranges |
| nearest | Nearest neighbor finding |
| nearest-method | Nearest neighbor finding |
| newViews | Views objects |
| ngap | GappedRanges objects |
| ngap-method | GappedRanges objects |
| nir_list | MaskCollection objects |
| nir_list-method | MaskCollection objects |
| nlevels-method | Vector objects |
| nobj | Grouping objects |
| nobj-method | Grouping objects |
| NormalIRanges | IRanges and NormalIRanges objects |
| NormalIRanges-class | IRanges and NormalIRanges objects |
| NormalIRangesList | List of IRanges and NormalIRanges |
| NormalIRangesList-class | List of IRanges and NormalIRanges |
| NROW-method | The DataTable API |
| NROW-method | Vector objects |
| nrow-method | External Data Frame |
| nrow-method | List of DataFrames |
| nrow-method | Data on ranges |
| nrun | Rle objects |
| nrun-method | Rle objects |
| NumericList | Lists of Atomic Vectors in Natural and Rle Form |
| NumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
| Ops-method | Lists of Atomic Vectors in Natural and Rle Form |
| Ops-method | Ranges objects |
| Ops-method | List of Ranges |
| Ops-method | Rle objects |
| order | Ranges comparison |
| order-method | Ranges comparison |
| Partitioning | Grouping objects |
| Partitioning-class | Grouping objects |
| PartitioningByEnd | Grouping objects |
| PartitioningByEnd-class | Grouping objects |
| PartitioningByWidth | Grouping objects |
| PartitioningByWidth-class | Grouping objects |
| paste | Rle objects |
| paste-method | Rle objects |
| pgap | Set operations on IRanges objects |
| pgap-method | Set operations on IRanges objects |
| pintersect | Set operations on IRanges objects |
| pintersect-method | Set operations on IRanges objects |
| pmax | Rle objects |
| pmax-method | Lists of Atomic Vectors in Natural and Rle Form |
| pmax-method | Rle objects |
| pmax.int | Rle objects |
| pmax.int-method | Lists of Atomic Vectors in Natural and Rle Form |
| pmax.int-method | Rle objects |
| pmin | Rle objects |
| pmin-method | Lists of Atomic Vectors in Natural and Rle Form |
| pmin-method | Rle objects |
| pmin.int | Rle objects |
| pmin.int-method | Lists of Atomic Vectors in Natural and Rle Form |
| pmin.int-method | Rle objects |
| Position-method | List objects |
| precede | Nearest neighbor finding |
| precede-method | Nearest neighbor finding |
| psetdiff | Set operations on IRanges objects |
| psetdiff-method | Set operations on IRanges objects |
| punion | Set operations on IRanges objects |
| punion-method | Set operations on IRanges objects |
| quantile-method | Lists of Atomic Vectors in Natural and Rle Form |
| quantile-method | Rle objects |
| queryHits | Matchings between Ranges |
| queryHits-method | Matchings between Ranges |
| queryHits-method | List of Matchings between Ranges |
| range-method | RangedData utility functions |
| range-method | Ranges utility functions |
| range-method | RangesList utility functions |
| RangedData | Data on ranges |
| rangedData | Applying over spaces |
| RangedData-class | Data on ranges |
| rangedData-method | Applying over spaces |
| RangedData-utils | RangedData utility functions |
| rangedData<- | Applying over spaces |
| rangedData<--method | Applying over spaces |
| RangedDataList | Lists of RangedData |
| RangedDataList-class | Lists of RangedData |
| RangedSelection | Selection of ranges and columns |
| RangedSelection-class | Selection of ranges and columns |
| Ranges | Ranges objects |
| ranges | Views objects |
| Ranges-class | Ranges objects |
| Ranges-comparison | Ranges comparison |
| ranges-method | Data on ranges |
| ranges-method | Selection of ranges and columns |
| ranges-method | Matchings between Ranges |
| ranges-method | List of Matchings between Ranges |
| ranges-method | Views objects |
| ranges-method | List of Views |
| Ranges-utils | Ranges utility functions |
| ranges<- | Views objects |
| ranges<--method | Data on ranges |
| ranges<--method | Selection of ranges and columns |
| ranges<--method | Views objects |
| RangesList | List of Ranges |
| RangesList-class | List of Ranges |
| RangesList-utils | RangesList utility functions |
| RangesMatching-class | Matchings between Ranges |
| RangesMatchingList-class | List of Matchings between Ranges |
| RangesORmissing-class | Ranges objects |
| rank-method | Ranges comparison |
| RawList | Lists of Atomic Vectors in Natural and Rle Form |
| RawList-class | Lists of Atomic Vectors in Natural and Rle Form |
| rbind | The DataTable API |
| rbind-method | External Data Frame |
| rbind-method | List of DataFrames |
| rbind-method | The DataTable API |
| rbind-method | Data on ranges |
| rdapply | Applying over spaces |
| rdapply-method | Applying over spaces |
| RDApplyParams | Applying over spaces |
| RDApplyParams-class | Applying over spaces |
| read.agpMask | Read a mask from a file |
| read.gapMask | Read a mask from a file |
| read.liftMask | Read a mask from a file |
| read.Mask | Read a mask from a file |
| read.rmMask | Read a mask from a file |
| read.trfMask | Read a mask from a file |
| reduce | Ranges utility functions |
| Reduce-method | List objects |
| reduce-method | Data on ranges |
| reduce-method | Ranges utility functions |
| reduce-method | RangesList utility functions |
| reduce-method | Views objects |
| reducerFun | Applying over spaces |
| reducerFun-method | Applying over spaces |
| reducerFun<- | Applying over spaces |
| reducerFun<--method | Applying over spaces |
| reducerParams | Applying over spaces |
| reducerParams-method | Applying over spaces |
| reducerParams<- | Applying over spaces |
| reducerParams<--method | Applying over spaces |
| reflect | Ranges utility functions |
| reflect-method | Ranges utility functions |
| relist-method | List objects |
| rep-method | Rle objects |
| rep-method | Vector objects |
| rep.int | Vector objects |
| rep.int-method | Rle objects |
| rep.int-method | Vector objects |
| resize | Ranges utility functions |
| resize-method | Ranges utility functions |
| resize-method | RangesList utility functions |
| restrict | Ranges utility functions |
| restrict-method | Ranges utility functions |
| restrict-method | RangesList utility functions |
| rev-method | Rle objects |
| rev-method | Vector objects |
| rev-method | reverse |
| reverse | reverse |
| reverse-method | reverse |
| Rle | Rle objects |
| Rle-class | Rle objects |
| Rle-method | Rle objects |
| RleList | Lists of Atomic Vectors in Natural and Rle Form |
| RleList-class | Lists of Atomic Vectors in Natural and Rle Form |
| RleViews | The RleViews class |
| RleViews-class | The RleViews class |
| RleViewsList | List of RleViews |
| RleViewsList-class | List of RleViews |
| rownames-method | External Data Frame |
| rownames-method | List of DataFrames |
| rownames-method | Data on ranges |
| rownames<--method | External Data Frame |
| rownames<--method | List of DataFrames |
| rownames<--method | Data on ranges |
| runLength | Rle objects |
| runLength-method | Rle objects |
| runLength<- | Rle objects |
| runLength<--method | Rle objects |
| runmean | Fixed width running window summaries across vector-like objects |
| runmean-method | Lists of Atomic Vectors in Natural and Rle Form |
| runmean-method | Rle objects |
| runmed-method | Lists of Atomic Vectors in Natural and Rle Form |
| runmed-method | Rle objects |
| runq | Fixed width running window summaries across vector-like objects |
| runq-method | Lists of Atomic Vectors in Natural and Rle Form |
| runq-method | Rle objects |
| runstat | Fixed width running window summaries across vector-like objects |
| runsum | Fixed width running window summaries across vector-like objects |
| runsum-method | Lists of Atomic Vectors in Natural and Rle Form |
| runsum-method | Rle objects |
| runValue | Rle objects |
| runValue-method | Rle objects |
| runValue<- | Rle objects |
| runValue<--method | Rle objects |
| runwtsum | Fixed width running window summaries across vector-like objects |
| runwtsum-method | Lists of Atomic Vectors in Natural and Rle Form |
| runwtsum-method | Rle objects |
| safeExplode | Low-level string utilities |
| sapply-method | List objects |
| score | Score accessor and setter |
| score-method | Data on ranges |
| score<- | Score accessor and setter |
| score<--method | Data on ranges |
| sd-method | Lists of Atomic Vectors in Natural and Rle Form |
| sd-method | Rle objects |
| seqapply | Apply function and cast to Vector |
| seqby | Apply function and cast to Vector |
| seqselect | Vector objects |
| seqselect-method | External Data Frame |
| seqselect-method | The DataTable API |
| seqselect-method | GappedRanges objects |
| seqselect-method | IRanges and NormalIRanges objects |
| seqselect-method | Data on ranges |
| seqselect-method | Rle objects |
| seqselect-method | Simple and Compressed List Classes |
| seqselect-method | Vector objects |
| seqselect-method | XVector objects |
| seqselect-method | XVectorList objects |
| seqselect<- | Vector objects |
| seqselect<--method | Lists of Atomic Vectors in Natural and Rle Form |
| seqselect<--method | The DataTable API |
| seqselect<--method | IRanges and NormalIRanges objects |
| seqselect<--method | Data on ranges |
| seqselect<--method | Rle objects |
| seqselect<--method | Simple and Compressed List Classes |
| seqselect<--method | Vector objects |
| seqsplit | Apply function and cast to Vector |
| setdiff | Set operations on IRanges objects |
| setdiff-method | Set operations on IRanges objects |
| setdiff-method | RangesList utility functions |
| shift | Ranges utility functions |
| shift-method | Ranges utility functions |
| shift-method | RangesList utility functions |
| shift-method | Views objects |
| shiftApply | Vector objects |
| shiftApply-method | Rle objects |
| shiftApply-method | Vector objects |
| show-method | Lists of Atomic Vectors in Natural and Rle Form |
| show-method | List of DataFrames |
| show-method | The DataTable API |
| show-method | GappedRanges objects |
| show-method | Grouping objects |
| show-method | List of IRanges and NormalIRanges |
| show-method | MaskCollection objects |
| show-method | Data on ranges |
| show-method | Ranges objects |
| show-method | List of Ranges |
| show-method | Rle objects |
| show-method | The RleViews class |
| show-method | Simple and Compressed List Classes |
| show-method | The XDoubleViews class |
| show-method | The XIntegerViews class |
| show-method | XVector objects |
| show-method | XVectorList objects |
| SimpleAtomicList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleCharacterList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleCharacterList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleComplexList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleComplexList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleDataFrameList-class | List of DataFrames |
| SimpleIntegerList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleIntegerList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleIRangesList | List of IRanges and NormalIRanges |
| SimpleIRangesList-class | List of IRanges and NormalIRanges |
| SimpleList | Simple and Compressed List Classes |
| SimpleList-class | Simple and Compressed List Classes |
| SimpleLogicalList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleLogicalList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleNormalIRangesList | List of IRanges and NormalIRanges |
| SimpleNormalIRangesList-class | List of IRanges and NormalIRanges |
| SimpleNumericList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleNumericList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleRangesList | List of Ranges |
| SimpleRangesList-class | List of Ranges |
| SimpleRawList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleRawList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleRleList | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleRleList-class | Lists of Atomic Vectors in Natural and Rle Form |
| SimpleRleViewsList-class | List of RleViews |
| SimpleSplitDataFrameList-class | List of DataFrames |
| SimpleViewsList | List of Views |
| SimpleViewsList-class | List of Views |
| simplify | Applying over spaces |
| simplify-method | Applying over spaces |
| simplify<- | Applying over spaces |
| simplify<--method | Applying over spaces |
| slice | Utility functions and numeric summary of Views of numerics |
| slice-method | Utility functions and numeric summary of Views of numerics |
| smoothEnds-method | Lists of Atomic Vectors in Natural and Rle Form |
| smoothEnds-method | Rle objects |
| solveUserSEW | The IRanges constructor and supporting functions |
| solveUserSEW0 | The IRanges constructor and supporting functions |
| sort-method | Lists of Atomic Vectors in Natural and Rle Form |
| sort-method | Ranges comparison |
| sort-method | Rle objects |
| space | List of Ranges |
| space-method | Data on ranges |
| space-method | List of Ranges |
| space-method | List of Matchings between Ranges |
| split-method | External Data Frame |
| split-method | List of IRanges and NormalIRanges |
| split-method | Data on ranges |
| split-method | List of Ranges |
| split-method | Rle objects |
| SplitDataFrameList | List of DataFrames |
| SplitDataFrameList-class | List of DataFrames |
| splitRanges | Rle objects |
| splitRanges-method | Rle objects |
| stack-method | List of DataFrames |
| stack-method | List objects |
| stack-method | Lists of RangedData |
| start-method | GappedRanges objects |
| start-method | Grouping objects |
| start-method | IRanges and NormalIRanges objects |
| start-method | List of IRanges and NormalIRanges |
| start-method | Interval Search Trees |
| start-method | Data on ranges |
| start-method | Ranges objects |
| start-method | List of Ranges |
| start-method | Rle objects |
| start-method | Views objects |
| start-method | List of Views |
| start<- | Ranges objects |
| start<--method | IRanges and NormalIRanges objects |
| start<--method | Data on ranges |
| start<--method | List of Ranges |
| start<--method | Views objects |
| strsplitAsListOfIntegerVectors | Low-level string utilities |
| sub-method | Lists of Atomic Vectors in Natural and Rle Form |
| sub-method | Rle objects |
| subject | Views objects |
| subject-method | List of RleViews |
| subject-method | Views objects |
| subjectHits | Matchings between Ranges |
| subjectHits-method | Matchings between Ranges |
| subjectHits-method | List of Matchings between Ranges |
| subseq | XVector objects |
| subseq-method | XVector objects |
| subseq-method | XVectorList objects |
| subseq<- | XVector objects |
| subseq<--method | XVector objects |
| subset-method | The DataTable API |
| subset-method | Vector objects |
| subsetByFilter | Collection of Filter Rules |
| subsetByFilter-method | Collection of Filter Rules |
| subsetByOverlaps | Interval Search Trees |
| subsetByOverlaps-method | Interval Search Trees |
| substr-method | Rle objects |
| substring-method | Rle objects |
| subviews | Views objects |
| subviews-method | Views objects |
| successiveIRanges | IRanges utility functions |
| successiveViews | Views objects |
| sum-method | Utility functions and numeric summary of Views of numerics |
| Summary-method | Lists of Atomic Vectors in Natural and Rle Form |
| Summary-method | Rle objects |
| Summary-method | Utility functions and numeric summary of Views of numerics |
| summary-method | Collection of Filter Rules |
| summary-method | List of IRanges and NormalIRanges |
| summary-method | Rle objects |
| svn.time | Low-level string utilities |
| t-method | Matchings between Ranges |
| t-method | List of Matchings between Ranges |
| table | Rle objects |
| table-method | Lists of Atomic Vectors in Natural and Rle Form |
| table-method | Rle objects |
| tail-method | The DataTable API |
| tail-method | Vector objects |
| tapply-method | Vector objects |
| threebands | Ranges utility functions |
| threebands-method | Ranges utility functions |
| threebands-method | XVectorList objects |
| togroup | Grouping objects |
| togroup-method | Grouping objects |
| togrouplength | Grouping objects |
| togrouplength-method | Grouping objects |
| togrouprank | Grouping objects |
| togrouprank-method | Grouping objects |
| tolower-method | Lists of Atomic Vectors in Natural and Rle Form |
| tolower-method | Rle objects |
| toupper-method | Lists of Atomic Vectors in Natural and Rle Form |
| toupper-method | Rle objects |
| trim | Views objects |
| trim-method | Views objects |
| tseqapply | Apply function and cast to Vector |
| union | Set operations on IRanges objects |
| union-method | Set operations on IRanges objects |
| union-method | RangesList utility functions |
| unique-method | Lists of Atomic Vectors in Natural and Rle Form |
| unique-method | Ranges comparison |
| unique-method | Rle objects |
| universe | List of Ranges |
| universe-method | Data on ranges |
| universe-method | List of Ranges |
| universe-method | List of Views |
| universe<- | List of Ranges |
| universe<--method | Data on ranges |
| universe<--method | List of Ranges |
| universe<--method | List of Views |
| unlist-method | List of IRanges and NormalIRanges |
| unlist-method | Lists of RangedData |
| unlist-method | Ranges objects |
| unlist-method | Simple and Compressed List Classes |
| unlist_list_of_XVectorList | XVectorList objects |
| unsplit_list_of_XVectorList | XVectorList objects |
| update-method | IRanges and NormalIRanges objects |
| update-method | Ranges objects |
| updateObject | Update an IRanges object from BioC 2.4 to current version |
| updateObject-method | Update an IRanges object from BioC 2.4 to current version |
| values | Vector objects |
| values-method | Data on ranges |
| values-method | Vector objects |
| values<- | Vector objects |
| values<--method | Data on ranges |
| values<--method | Vector objects |
| var-method | Lists of Atomic Vectors in Natural and Rle Form |
| var-method | Rle objects |
| Vector | Vector objects |
| Vector-class | Vector objects |
| viewApply | Utility functions and numeric summary of Views of numerics |
| viewApply-method | Utility functions and numeric summary of Views of numerics |
| viewMaxs | Utility functions and numeric summary of Views of numerics |
| viewMaxs-method | Utility functions and numeric summary of Views of numerics |
| viewMeans | Utility functions and numeric summary of Views of numerics |
| viewMeans-method | Utility functions and numeric summary of Views of numerics |
| viewMins | Utility functions and numeric summary of Views of numerics |
| viewMins-method | Utility functions and numeric summary of Views of numerics |
| viewRangeMaxs | Utility functions and numeric summary of Views of numerics |
| viewRangeMaxs-method | Utility functions and numeric summary of Views of numerics |
| viewRangeMins | Utility functions and numeric summary of Views of numerics |
| viewRangeMins-method | Utility functions and numeric summary of Views of numerics |
| Views | Views objects |
| Views-class | Views objects |
| Views-method | The RleViews class |
| Views-method | List of RleViews |
| Views-method | The XDoubleViews class |
| Views-method | The XIntegerViews class |
| Views-utils | Utility functions and numeric summary of Views of numerics |
| ViewsList | List of Views |
| ViewsList-class | List of Views |
| viewSums | Utility functions and numeric summary of Views of numerics |
| viewSums-method | Utility functions and numeric summary of Views of numerics |
| viewWhichMaxs | Utility functions and numeric summary of Views of numerics |
| viewWhichMaxs-method | Utility functions and numeric summary of Views of numerics |
| viewWhichMins | Utility functions and numeric summary of Views of numerics |
| viewWhichMins-method | Utility functions and numeric summary of Views of numerics |
| vmembers | Grouping objects |
| vmembers-method | Grouping objects |
| which-method | Lists of Atomic Vectors in Natural and Rle Form |
| which-method | Rle objects |
| which.max-method | Lists of Atomic Vectors in Natural and Rle Form |
| which.max-method | Utility functions and numeric summary of Views of numerics |
| which.min-method | Lists of Atomic Vectors in Natural and Rle Form |
| which.min-method | Utility functions and numeric summary of Views of numerics |
| whichAsIRanges | IRanges utility functions |
| whichFirstNotNormal | Ranges objects |
| whichFirstNotNormal-method | List of IRanges and NormalIRanges |
| whichFirstNotNormal-method | Ranges objects |
| width | Ranges objects |
| width-method | Grouping objects |
| width-method | IRanges and NormalIRanges objects |
| width-method | List of IRanges and NormalIRanges |
| width-method | MaskCollection objects |
| width-method | Data on ranges |
| width-method | Ranges objects |
| width-method | List of Ranges |
| width-method | Rle objects |
| width-method | Views objects |
| width-method | List of Views |
| width-method | XVectorList objects |
| width<- | Ranges objects |
| width<--method | IRanges and NormalIRanges objects |
| width<--method | Data on ranges |
| width<--method | List of Ranges |
| width<--method | Views objects |
| window-method | The DataTable API |
| window-method | GappedRanges objects |
| window-method | IRanges and NormalIRanges objects |
| window-method | Rle objects |
| window-method | Vector objects |
| window-method | XVector objects |
| window-method | XVectorList objects |
| window<--method | The DataTable API |
| window<--method | Data on ranges |
| window<--method | Vector objects |
| with-method | List objects |
| within-method | Data on ranges |
| XDouble | XVector objects |
| XDouble-class | XVector objects |
| XDoubleViews | The XDoubleViews class |
| XDoubleViews-class | The XDoubleViews class |
| XInteger | XVector objects |
| XInteger-class | XVector objects |
| XIntegerViews | The XIntegerViews class |
| XIntegerViews-class | The XIntegerViews class |
| XNumeric | XVector objects |
| XRaw | XVector objects |
| XRaw-class | XVector objects |
| XRawList | XRawList objects |
| XRawList-class | XRawList objects |
| xtabs-method | Statistical modeling with DataTable |
| xvcopy | Object compaction |
| xvcopy-method | Object compaction |
| XVector | XVector objects |
| XVector-class | XVector objects |
| XVectorList | XVectorList objects |
| XVectorList-class | XVectorList objects |
| !-method | Lists of Atomic Vectors in Natural and Rle Form |
| !-method | Rle objects |
| != | Vector objects |
| !=-method | Ranges comparison |
| !=-method | Vector objects |
| !=-method | The XDoubleViews class |
| !=-method | The XIntegerViews class |
| $-method | List objects |
| $<--method | Data on ranges |
| $<--method | Simple and Compressed List Classes |
| %in%-method | Lists of Atomic Vectors in Natural and Rle Form |
| %in%-method | Interval Search Trees |
| %in%-method | Rle objects |
| %in%-method | Views objects |
| %in%-method | List of Views |
| < | Ranges comparison |
| <-method | Ranges comparison |
| <= | Ranges comparison |
| <=-method | Ranges comparison |
| == | Ranges comparison |
| ==-method | Ranges comparison |
| ==-method | The XDoubleViews class |
| ==-method | The XIntegerViews class |
| ==-method | XVector objects |
| > | Ranges comparison |
| >-method | Ranges comparison |
| >= | Ranges comparison |
| >=-method | Ranges comparison |
| [-method | External Data Frame |
| [-method | List of DataFrames |
| [-method | Collection of Filter Rules |
| [-method | GappedRanges objects |
| [-method | IRanges and NormalIRanges objects |
| [-method | List of IRanges and NormalIRanges |
| [-method | MaskCollection objects |
| [-method | Data on ranges |
| [-method | Ranges objects |
| [-method | List of Ranges |
| [-method | Rle objects |
| [-method | Simple and Compressed List Classes |
| [-method | Vector objects |
| [-method | Views objects |
| [-method | XVector objects |
| [-method | XVectorList objects |
| [<--method | External Data Frame |
| [<--method | List of DataFrames |
| [<--method | IRanges and NormalIRanges objects |
| [<--method | Data on ranges |
| [<--method | Rle objects |
| [<--method | Simple and Compressed List Classes |
| [<--method | Vector objects |
| [<--method | XVectorList objects |
| [[-method | External Data Frame |
| [[-method | GappedRanges objects |
| [[-method | Grouping objects |
| [[-method | List of IRanges and NormalIRanges |
| [[-method | List objects |
| [[-method | MaskCollection objects |
| [[-method | Data on ranges |
| [[-method | Ranges objects |
| [[-method | Simple and Compressed List Classes |
| [[-method | Views objects |
| [[-method | XVectorList objects |
| [[<--method | External Data Frame |
| [[<--method | Collection of Filter Rules |
| [[<--method | Data on ranges |
| [[<--method | Simple and Compressed List Classes |
| [[<--method | XVectorList objects |