A B C E F G I L N O P Q R S T U V misc
| activeView | Accessing the active view |
| activeView-method | Accessing the active view |
| activeView-methods | Accessing the active view |
| activeView<- | Accessing the active view |
| activeView<--methods | Accessing the active view |
| asBED | Coerce to BED structure |
| asBED-method | Coerce to BED structure |
| BasicTrackLine-class | Class "BasicTrackLine" |
| Bed15TrackLine-class | Class "Bed15TrackLine" |
| BigWigFile | BigWigFile objects |
| BigWigFile-class | BigWigFile objects |
| BigWigSelection | Selection of ranges and columns |
| BigWigSelection-class | Selection of ranges and columns |
| blocks | Get blocks/exons |
| blocks-method | Get blocks/exons |
| blocks-methods | Get blocks/exons |
| browseGenome | Browse a genome |
| browseGenome-method | Browse a genome |
| browserSession | Get a genome browser session |
| BrowserSession-class | Class "BrowserSession" |
| browserSession-method | Querying UCSC Tables |
| browserSession-method | Get a genome browser session |
| browserSession-methods | Get a genome browser session |
| browserSession<- | Querying UCSC Tables |
| browserSession<--method | Querying UCSC Tables |
| browserView | Getting browser views |
| BrowserView-class | Class "BrowserView" |
| browserView-method | Getting browser views |
| browserView-methods | Getting browser views |
| BrowserViewList | Lists of BrowserView |
| BrowserViewList-class | Lists of BrowserView |
| browserViews | Getting the browser views |
| browserViews-method | Getting the browser views |
| browserViews-methods | Getting the browser views |
| Chain-class | Chain objects |
| ChainBlock-class | Chain objects |
| chrom | Data on a Genome |
| chrom-method | Data on a Genome |
| chrom-method | Ranges on a Genome |
| chrom<- | Data on a Genome |
| chrom<--method | Data on a Genome |
| chrom<--method | Ranges on a Genome |
| class:BigWigFile | BigWigFile objects |
| class:Chain | Chain objects |
| class:ChainBlock | Chain objects |
| class:Quickload | Quickload Access |
| class:QuickloadGenome | Quickload Genome Access |
| class:RTLFile | RTLFile objects |
| class:TrackDb | Track Databases |
| class:TwoBitFile | 2bit Files |
| coerce-method | Class "Bed15TrackLine" |
| coerce-method | Selection of ranges and columns |
| coerce-method | Quickload Access |
| coerce-method | Class "UCSCData" |
| coerce-method | Class "BasicTrackLine" |
| coerce-method | Class "TrackLine" |
| coerce-method | Class "GraphTrackLine" |
| cpneTrack | CPNE1 SNP track |
| elementMetadata-method | Quickload Genome Access |
| export | Export objects to connections |
| export-method | Export objects to connections |
| export.2bit | 2bit Files |
| export.2bit-method | 2bit Files |
| export.bed | Export tracks |
| export.bed-method | Class "UCSCData" |
| export.bed-method | Export tracks |
| export.bed15 | Export tracks |
| export.bed15-method | Class "UCSCData" |
| export.bed15-method | Export tracks |
| export.bedGraph | Export tracks |
| export.bedGraph-method | Export tracks |
| export.bw | Export tracks |
| export.bw-method | Export tracks |
| export.gff | Export tracks |
| export.gff-method | Class "UCSCData" |
| export.gff-method | Export tracks |
| export.gff1 | Export tracks |
| export.gff1-method | Export tracks |
| export.gff2 | Export tracks |
| export.gff2-method | Export tracks |
| export.gff3 | Export tracks |
| export.gff3-method | Export tracks |
| export.ucsc | Export tracks |
| export.ucsc-method | Class "UCSCData" |
| export.ucsc-method | Export tracks |
| export.wig | Export tracks |
| export.wig-method | Export tracks |
| formatDescription | UCSC Schema |
| formatDescription-method | UCSC Schema |
| genome-method | Quickload Access |
| genome-method | Quickload Genome Access |
| genome-method | UCSC Schema |
| genome-method | Class "BrowserSession" |
| genome-method | Class "UCSCSession" |
| genome<--method | Class "BrowserSession" |
| genome<--method | Class "UCSCSession" |
| genomeBrowsers | Get available genome browsers |
| GenomicData | Data on a Genome |
| GenomicSelection | Genomic data selection |
| getTable | Querying UCSC Tables |
| getTable-method | Querying UCSC Tables |
| GRangesForBSGenome | GRanges for a Genome |
| GRangesForUCSCGenome | GRanges for a Genome |
| GraphTrackLine-class | Class "GraphTrackLine" |
| import | Importing objects |
| import-method | Importing objects |
| import.2bit | 2bit Files |
| import.2bit-method | 2bit Files |
| import.bed | Importing tracks |
| import.bed-method | Importing tracks |
| import.bed15 | Importing tracks |
| import.bed15-method | Importing tracks |
| import.bedGraph | Importing tracks |
| import.bedGraph-method | Importing tracks |
| import.bw | Importing tracks |
| import.bw-method | BigWigFile objects |
| import.bw-method | Importing tracks |
| import.chain | Chain objects |
| import.chain-method | Chain objects |
| import.gff | Importing tracks |
| import.gff-method | Importing tracks |
| import.gff1 | Importing tracks |
| import.gff1-method | Importing tracks |
| import.gff2 | Importing tracks |
| import.gff2-method | Importing tracks |
| import.gff3 | Importing tracks |
| import.gff3-method | Importing tracks |
| import.ucsc | Importing tracks |
| import.ucsc-method | Importing tracks |
| import.wig | Importing tracks |
| import.wig-method | Importing tracks |
| initialize-method | Class "UCSCData" |
| initialize-method | Class "UCSCSession" |
| length-method | Quickload Access |
| length-method | Quickload Genome Access |
| liftOver | Lift intervals between genome builds |
| liftOver-method | Lift intervals between genome builds |
| names-method | Quickload Genome Access |
| names-method | Querying UCSC Tables |
| names-method | Class "BrowserSession" |
| names<--method | Querying UCSC Tables |
| nrow-method | UCSC Schema |
| offset-method | Chain objects |
| organism-method | Quickload Genome Access |
| path | RTLFile objects |
| path-method | RTLFile objects |
| Quickload | Quickload Access |
| quickload | Quickload Genome Access |
| Quickload-class | Quickload Access |
| QuickloadGenome | Quickload Genome Access |
| QuickloadGenome-class | Quickload Genome Access |
| range-method | Querying UCSC Tables |
| range-method | Class "BrowserSession" |
| range-method | Class "UCSCSession" |
| range-method | Class "UCSCView" |
| range<- | Class "UCSCSession" |
| range<--method | Querying UCSC Tables |
| range<--method | Class "UCSCSession" |
| range<--method | Class "UCSCView" |
| RangedData-methods | Data on a Genome |
| ranges-method | Chain objects |
| RangesList-methods | Ranges on a Genome |
| referenceSequence | Quickload Genome Access |
| referenceSequence-method | Quickload Genome Access |
| referenceSequence<- | Quickload Genome Access |
| referenceSequence<--method | Quickload Genome Access |
| releaseDate-method | Quickload Genome Access |
| reversed | Chain objects |
| reversed-method | Chain objects |
| RTLFile-class | RTLFile objects |
| score-method | Chain objects |
| score-method | Data on a Genome |
| seqinfo-method | BigWigFile objects |
| seqinfo-method | Quickload Genome Access |
| seqinfo-method | Data on a Genome |
| seqinfo-method | Ranges on a Genome |
| seqinfo-method | 2bit Files |
| seqinfo-method | Class "UCSCSession" |
| seqinfo<--method | Quickload Genome Access |
| seqinfo<--method | Data on a Genome |
| seqinfo<--method | Ranges on a Genome |
| sequence<- | Load a sequence |
| sequence<--methods | Load a sequence |
| show-method | Quickload Access |
| show-method | Quickload Genome Access |
| show-method | RTLFile objects |
| show-method | Class "UCSCData" |
| show-method | Querying UCSC Tables |
| show-method | Class "BrowserSession" |
| show-method | Class "BrowserView" |
| show-method | Class "TrackLine" |
| space-method | Chain objects |
| summary-method | BigWigFile objects |
| tableName | Querying UCSC Tables |
| tableName-method | UCSC Schema |
| tableName-method | Querying UCSC Tables |
| tableName<- | Querying UCSC Tables |
| tableName<--method | Querying UCSC Tables |
| tableNames | Querying UCSC Tables |
| tableNames-method | Querying UCSC Tables |
| targets | microRNA target sites |
| track | Querying UCSC Tables |
| track-method | Quickload Genome Access |
| track-method | Querying UCSC Tables |
| track-method | Class "UCSCSession" |
| track<- | Laying tracks |
| track<--method | Quickload Genome Access |
| track<--method | Track Databases |
| track<--method | Laying tracks |
| track<--methods | Laying tracks |
| TrackDb-class | Track Databases |
| TrackLine-class | Class "TrackLine" |
| trackName | Querying UCSC Tables |
| trackName-method | Querying UCSC Tables |
| trackName<- | Querying UCSC Tables |
| trackName<--method | Querying UCSC Tables |
| trackNames | Accessing track names |
| trackNames-method | Querying UCSC Tables |
| trackNames-method | Class "BrowserSession" |
| trackNames-method | Accessing track names |
| trackNames-methods | Accessing track names |
| trackNames<- | Accessing track names |
| trackNames<--method | Accessing track names |
| trackNames<--methods | Accessing track names |
| TwoBitFile | 2bit Files |
| TwoBitFile-class | 2bit Files |
| UCSCData-class | Class "UCSCData" |
| ucscGenomes | Get available genomes on UCSC |
| ucscSchema | Querying UCSC Tables |
| UCSCSchema-class | UCSC Schema |
| ucscSchema-method | UCSC Schema |
| ucscSchema-method | Querying UCSC Tables |
| UCSCSession-class | Class "UCSCSession" |
| ucscTableQuery | Querying UCSC Tables |
| UCSCTableQuery-class | Querying UCSC Tables |
| ucscTableQuery-method | Querying UCSC Tables |
| ucscTrackModes | Accessing UCSC track modes |
| UCSCTrackModes-class | Class "UCSCTrackModes" |
| ucscTrackModes-method | Accessing UCSC track modes |
| ucscTrackModes-methods | Accessing UCSC track modes |
| ucscTrackModes<- | Accessing UCSC track modes |
| ucscTrackModes<--method | Accessing UCSC track modes |
| ucscTrackModes<--methods | Accessing UCSC track modes |
| UCSCView-class | Class "UCSCView" |
| uri | Quickload Access |
| uri-method | Quickload Genome Access |
| visible | Class "BrowserView" |
| visible-method | Class "BrowserView" |
| visible-method | Class "UCSCView" |
| visible<- | Class "BrowserView" |
| visible<--method | Class "BrowserView" |
| visible<--method | Class "UCSCView" |
| $-method | Quickload Access |
| $-method | Track Databases |
| $<--method | Track Databases |
| [-method | Class "UCSCTrackModes" |
| [<--method | Class "UCSCTrackModes" |
| [[-method | Quickload Access |
| [[-method | Track Databases |
| [[<--method | Track Databases |