Commit 83c59cbc authored by Aflitos, Saulo Alves's avatar Aflitos, Saulo Alves
Browse files

Added the other genomes

parent ddea8893
...@@ -32,13 +32,19 @@ ASSEMBLY=/home/assembly/dev_150/assemblies/allpaths_lg_sample_heinz_raw/sl/data/ ...@@ -32,13 +32,19 @@ ASSEMBLY=/home/assembly/dev_150/assemblies/allpaths_lg_sample_heinz_raw/sl/data/
PREFIX=allpaths_lg PREFIX=allpaths_lg
ASSEMBLY=/home/assembly/dev_150/assemblies/clc-default/clc_contigs.fa ASSEMBLY=/home/assembly/dev_150/assemblies/clc-default/clc_contigs.fa
PREFIX=clc PREFIX=clc
ASSEMBLY=/home/assembly/dev_150/assemblies/allpaths_lg_sample_heinz_raw_with454/sl/data/run/ASSEMBLIES/test/final.assembly.fasta
PREFIX=allpaths_lg_454
ASSEMBLY=/home/assembly/dev_150/assemblies/S_lycopersicum_scaffolds.2.40.fa
PREFIX=heinz
#ASSEMBLY=/home/assembly/progs/fermi/heinz/fmdef.p4.fa
#PREFIX=fermi
MIN_PE_INS=320 MIN_PE_INS=320
MAX_PE_INS=430 MAX_PE_INS=430
MIN_MP_INS=2435 MIN_MP_INS=2435
MAX_MP_INS=3555 MAX_MP_INS=3555
ESTIMATED_GENOME_SIZE=760000000 ESTIMATED_GENOME_SIZE=760000000
OUTPUT_HEADER=${PREFIX}.FRC. OUTPUT_HEADER=${PREFIX}.FRC.
# Map reads against assembly with BWA # Map reads against assembly with BWA
# Create index # Create index
if [ ! -f ${PREFIX}.bwt ] if [ ! -f ${PREFIX}.bwt ]
......
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