From c4257a925832e5bebb14e285bab530c61e66c895 Mon Sep 17 00:00:00 2001 From: "Heuer, Hannelore" <hannelore.heuer@wur.nl> Date: Tue, 27 Sep 2022 07:43:32 +0000 Subject: [PATCH] Delete goslim_pir.ttl --- goslim_pir.ttl | 13212 ----------------------------------------------- 1 file changed, 13212 deletions(-) delete mode 100644 goslim_pir.ttl diff --git a/goslim_pir.ttl b/goslim_pir.ttl deleted file mode 100644 index 5569a6f..0000000 --- a/goslim_pir.ttl +++ /dev/null @@ -1,13212 +0,0 @@ -# baseURI: http://purl.obolibrary.org/obo/go/subsets/goslim_pir.owl - -@prefix : <http://purl.obolibrary.org/obo/go/subsets/goslim_pir.owl#> . -@prefix go: <http://purl.obolibrary.org/obo/go#> . -@prefix obo: <http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/> . -@prefix obo1: <http://purl.obolibrary.org/obo/> . -@prefix oboInOwl: <http://www.geneontology.org/formats/oboInOwl#> . -@prefix owl: <http://www.w3.org/2002/07/owl#> . -@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . -@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . -@prefix terms: <http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/> . -@prefix xsd: <http://www.w3.org/2001/XMLSchema#> . - -obo1:BFO_0000050 - a owl:ObjectProperty ; - a owl:TransitiveProperty ; - oboInOwl:hasDbXref "BFO:0000050" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "part_of" ; - oboInOwl:shorthand "part_of" ; - rdfs:label "part of" ; - owl:inverseOf obo1:BFO_0000051 ; -. -obo1:BFO_0000051 - a owl:ObjectProperty ; - a owl:TransitiveProperty ; - oboInOwl:hasDbXref "BFO:0000051" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_part" ; - oboInOwl:shorthand "has_part" ; - rdfs:label "has part" ; -. -obo1:BFO_0000062 - oboInOwl:hasDbXref "BFO:0000062" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "preceded_by" ; - oboInOwl:shorthand "preceded_by" ; - rdfs:label "preceded by" ; -. -obo1:BFO_0000063 - oboInOwl:hasDbXref "BFO:0000063" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "precedes" ; - oboInOwl:shorthand "precedes" ; - rdfs:label "precedes" ; -. -obo1:BFO_0000066 - a owl:ObjectProperty ; - oboInOwl:hasDbXref "BFO:0000066" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "occurs_in" ; - oboInOwl:shorthand "occurs_in" ; - rdfs:label "occurs in" ; - owl:propertyChainAxiom ( - obo1:BFO_0000066 - obo1:BFO_0000050 - ) ; -. -obo1:GOREL_0000040 - oboInOwl:created_by "cjm" ; - oboInOwl:creation_date "2012-03-14T10:35:44Z" ; - oboInOwl:hasDbXref "GOREL:0000040" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in" ; - oboInOwl:shorthand "results_in" ; - rdfs:comment "This relation is currently used to connect two regulation processes p1 and p2, such that if r1 regulates p1 and r2 regulates p2, and r1 results_in r2 then the regulation of p1 is required for the regulation of p2. For an example of use, see GO:0035958 'regulation of glyoxylate cycle by regulation of transcription from RNA polymerase II promoter'. Note that a precise definition of this relation is under discussion. After it has been formalized it will be added to RO, where it will have a RO ID. Note that the existing identifier and label are subject to change." ; - rdfs:label "results_in" ; -. -obo1:GOREL_0001019 - oboInOwl:hasDbXref "GOREL:0001019" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_division_of" ; - oboInOwl:shorthand "results_in_division_of" ; - rdfs:comment "use occurs_in" ; - rdfs:label "results_in_division_of" ; -. -obo1:GOREL_0002003 - oboInOwl:hasDbXref "GOREL:0002003" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_distribution_of" ; - oboInOwl:shorthand "results_in_distribution_of" ; - rdfs:label "results_in_distribution_of" ; -. -obo1:GOREL_0002004 - oboInOwl:hasDbXref "GOREL:0002004" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_fission_of" ; - oboInOwl:shorthand "results_in_fission_of" ; - rdfs:label "results_in_fission_of" ; -. -obo1:GOREL_0012006 - oboInOwl:hasDbXref "GOREL:0012006" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_maintenance_of" ; - oboInOwl:shorthand "results_in_maintenance_of" ; - rdfs:label "results_in_maintenance_of" ; -. -obo1:GO_0000003 - a owl:Class ; - obo1:IAO_0000115 "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms." ; - oboInOwl:hasAlternativeId "GO:0019952" ; - oboInOwl:hasAlternativeId "GO:0050876" ; - oboInOwl:hasDbXref "Wikipedia:Reproduction" ; - oboInOwl:hasExactSynonym "reproductive physiological process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0000003" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "reproduction" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0000109 - a owl:Class ; - obo1:IAO_0000115 "Any complex formed of proteins that act in nucleotide-excision repair." ; - oboInOwl:hasNarrowSynonym "UvrB-UvrC complex" ; - oboInOwl:hasNarrowSynonym "UvrBC complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000109" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that process information is included in the term and definition for the purpose of describing and distinguishing the complex." ; - rdfs:label "nucleotide-excision repair complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0000128 - a owl:Class ; - obo1:IAO_0000115 "The reversible, non-sexual aggregation of single-celled organisms in suspension to form aggregates of many cells known as flocs." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/18785"^^xsd:anyURI ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/20192"^^xsd:anyURI ; - oboInOwl:created_by "bf" ; - oboInOwl:creation_date "2012-07-11T01:30:40Z" ; - oboInOwl:hasAlternativeId "GO:0000501" ; - oboInOwl:hasAlternativeId "GO:0032128" ; - oboInOwl:hasAlternativeId "GO:0036281" ; - oboInOwl:hasAlternativeId "GO:0036282" ; - oboInOwl:hasAlternativeId "GO:0043689" ; - oboInOwl:hasAlternativeId "GO:0043690" ; - oboInOwl:hasDbXref "Wikipedia:Flocculation" ; - oboInOwl:hasExactSynonym "cell-cell adhesion involved in flocculation" ; - oboInOwl:hasNarrowSynonym "cell-cell adhesion involved in flocculation via cell wall protein-carbohydrate interaction" ; - oboInOwl:hasNarrowSynonym "co-flocculation" ; - oboInOwl:hasNarrowSynonym "coflocculation via lectin-mannose interaction" ; - oboInOwl:hasNarrowSynonym "coflocculation via protein-carbohydrate interaction" ; - oboInOwl:hasNarrowSynonym "coflocculation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "flocculation via cell wall protein-carbohydrate interaction" ; - oboInOwl:hasRelatedSynonym "flocculation via extracellular polymer" ; - oboInOwl:id "GO:0000128" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "The word floc derives from the Latin word floccus, which means a tuft of wool." ; - rdfs:label "flocculation" ; - rdfs:subClassOf obo1:GO_0007155 ; - rdfs:subClassOf obo1:GO_0051703 ; -. -obo1:GO_0000133 - a owl:Class ; - obo1:IAO_0000115 "Protein complex that plays a role in determining cell polarity by directing the localized assembly of actin filaments at polarization sites; in Saccharomyces the polarisome includes Bni1p, Spa2p, Pea2p, and Bud6p." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000133" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "polarisome" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0030427 ; - ] ; -. -obo1:GO_0000151 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000151" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ubiquitin ligase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0000166 - a owl:Class ; - obo1:IAO_0000115 "Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0000166" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "nucleotide binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0000178 - a owl:Class ; - obo1:IAO_0000115 "A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured." ; - oboInOwl:hasExactSynonym "exosome (ribonucleasease complex)" ; - oboInOwl:hasExactSynonym "exosome multienzyme ribonuclease complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000178" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term should not be confused with 'exosome' used in the context of vesicles released from multivesicular bodies." ; - rdfs:label "exosome (RNase complex)" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0000280 - a owl:Class ; - obo1:IAO_0000115 "The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "karyokinesis" ; - oboInOwl:id "GO:0000280" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nuclear division" ; - rdfs:subClassOf obo1:GO_0048285 ; -. -obo1:GO_0000307 - a owl:Class ; - obo1:IAO_0000115 "Cyclin-dependent protein kinases (CDKs) are enzyme complexes that contain a kinase catalytic subunit associated with a regulatory cyclin partner." ; - oboInOwl:hasExactSynonym "CDK holoenzyme" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000307" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cyclin-dependent protein kinase holoenzyme complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0000346 - a owl:Class ; - obo1:IAO_0000115 "The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans." ; - oboInOwl:hasExactSynonym "TREX complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000346" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transcription export complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0000347 - a owl:Class ; - obo1:IAO_0000115 "The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1p, Tho2p, Thp1p, and Mft1p, while the human complex is composed of 7 subunits." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000347" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "THO complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0000375 - a owl:Class ; - obo1:IAO_0000115 "Splicing of RNA via a series of two transesterification reactions." ; - oboInOwl:hasAlternativeId "GO:0000385" ; - oboInOwl:hasAlternativeId "GO:0031202" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "RNA splicing factor activity, transesterification mechanism" ; - oboInOwl:hasRelatedSynonym "pre-mRNA splicing factor activity" ; - oboInOwl:hasRelatedSynonym "spliceosomal catalysis" ; - oboInOwl:id "GO:0000375" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that nuclear mRNA, Group I, Group II, and Group III introns are all spliced by a series of two transesterification reactions that occur within the RNA itself, or between two RNAs in trans splicing. Some of these require one or more proteins to stabilize the catalytic conformation, while others are autocatalytic. Note that tRNA introns are spliced by a different catalytic mechanism." ; - rdfs:label "RNA splicing, via transesterification reactions" ; - rdfs:subClassOf obo1:GO_0006396 ; -. -obo1:GO_0000439 - a owl:Class ; - obo1:IAO_0000115 "The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD." ; - oboInOwl:hasAlternativeId "GO:0000441" ; - oboInOwl:hasExactSynonym "SSL2-core TFIIH complex" ; - oboInOwl:hasExactSynonym "core TFIIH complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000439" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transcription factor TFIIH core complex" ; - rdfs:subClassOf obo1:GO_0005667 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0000502 - a owl:Class ; - obo1:IAO_0000115 "A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core." ; - oboInOwl:hasExactSynonym "proteasome" ; - oboInOwl:hasNarrowSynonym "26S proteasome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000502" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "proteasome complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0000746 - a owl:Class ; - obo1:IAO_0000115 "The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms." ; - oboInOwl:hasDbXref "Wikipedia:Conjugation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0000746" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "conjugation" ; - rdfs:subClassOf obo1:GO_0051704 ; -. -obo1:GO_0000776 - a owl:Class ; - obo1:IAO_0000115 "A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21126"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0000777" ; - oboInOwl:hasAlternativeId "GO:0000778" ; - oboInOwl:hasAlternativeId "GO:0005699" ; - oboInOwl:hasDbXref "Wikipedia:Kinetochore" ; - oboInOwl:hasExactSynonym "condensed chromosome kinetochore" ; - oboInOwl:hasExactSynonym "condensed nuclear chromosome kinetochore" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000776" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that the kinetochore overlaps the centromeric DNA, but centromeric DNA is not part of the kinetochore." ; - rdfs:label "kinetochore" ; - rdfs:subClassOf obo1:GO_0043232 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0000782 - a owl:Class ; - obo1:IAO_0000115 "A complex of DNA and protein located at the end of a linear chromosome that protects and stabilizes a linear chromosome." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000782" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term can be used in place of the obsolete cellular component term 'telomere ; GO:0005696'. Use with caution because this term refers to a specific protein complex and not a region of the chromosome." ; - rdfs:label "telomere cap complex" ; - rdfs:subClassOf obo1:GO_0032993 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0000786 - a owl:Class ; - obo1:IAO_0000115 "A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures." ; - oboInOwl:hasAlternativeId "GO:0000787" ; - oboInOwl:hasAlternativeId "GO:0000788" ; - oboInOwl:hasAlternativeId "GO:0005718" ; - oboInOwl:hasDbXref "Wikipedia:Nucleosome" ; - oboInOwl:hasNarrowSynonym "cytoplasmic nucleosome" ; - oboInOwl:hasNarrowSynonym "nuclear nucleosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000786" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleosome" ; - rdfs:subClassOf obo1:GO_0032993 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0000796 - a owl:Class ; - obo1:IAO_0000115 "A multisubunit protein complex that plays a central role in chromosome condensation in meiosis and mitosis." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/12832"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0000797" ; - oboInOwl:hasAlternativeId "GO:0000799" ; - oboInOwl:hasAlternativeId "GO:0005676" ; - oboInOwl:hasAlternativeId "GO:0008620" ; - oboInOwl:hasAlternativeId "GO:0008621" ; - oboInOwl:hasAlternativeId "GO:0061814" ; - oboInOwl:hasNarrowSynonym "13S condensin complex" ; - oboInOwl:hasNarrowSynonym "8S condensin complex" ; - oboInOwl:hasNarrowSynonym "Smc2-Smc4 complex" ; - oboInOwl:hasNarrowSynonym "condensin I complex" ; - oboInOwl:hasNarrowSynonym "condensin core heterodimer" ; - oboInOwl:hasNarrowSynonym "nuclear condensin complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "SMC complex" ; - oboInOwl:id "GO:0000796" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "condensin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0000808 - a owl:Class ; - obo1:IAO_0000115 "A multisubunit complex that is located at the replication origins of a chromosome." ; - oboInOwl:hasDbXref "Wikipedia:Origin_recognition_complex" ; - oboInOwl:hasExactSynonym "ORC" ; - oboInOwl:hasExactSynonym "origin of replication recognition complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000808" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "origin recognition complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0000930 - a owl:Class ; - obo1:IAO_0000115 "A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0000930" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "gamma-tubulin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005856 ; - ] ; -. -obo1:GO_0001534 - a owl:Class ; - obo1:IAO_0000115 "Protein complex that links the outer microtubule doublet of the ciliary or flagellum axoneme with the sheath that surrounds the central pair of microtubules. Composed of a stalk that attaches to each doublet microtubule and a globular structure (spoke head) that projects toward the central pair of microtubules." ; - oboInOwl:hasDbXref "Wikipedia:Radial_spoke" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0001534" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "radial spoke" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005930 ; - ] ; -. -obo1:GO_0001775 - a owl:Class ; - obo1:IAO_0000115 "A change in the morphology or behavior of a cell resulting from exposure to an activating factor such as a cellular or soluble ligand." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0001775" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell activation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0001816 - a owl:Class ; - obo1:IAO_0000115 "The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/19116"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0042032" ; - oboInOwl:hasAlternativeId "GO:0042089" ; - oboInOwl:hasAlternativeId "GO:0042107" ; - oboInOwl:hasAlternativeId "GO:0050663" ; - oboInOwl:hasNarrowSynonym "cytokine biosynthetic process" ; - oboInOwl:hasNarrowSynonym "cytokine metabolic process" ; - oboInOwl:hasNarrowSynonym "cytokine secretion" ; - oboInOwl:hasNarrowSynonym "interferon production" ; - oboInOwl:hasNarrowSynonym "interferon secretion" ; - oboInOwl:hasNarrowSynonym "interleukin production" ; - oboInOwl:hasNarrowSynonym "interleukin secretion" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0001816" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is intended for use when a gene product is seen to cause apparent increases in intracellular or extracellular cytokine levels, without specific regard as to whether the increase is due to increased biosynthesis, increased secretion of preexisting cytokine molecules, or increased conversion from precursor molecules." ; - rdfs:label "cytokine production" ; - rdfs:subClassOf obo1:GO_0032501 ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0001882 - a owl:Class ; - obo1:IAO_0000115 "Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0001882" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleoside binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0001906 - a owl:Class ; - obo1:IAO_0000115 "Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "necrosis" ; - oboInOwl:id "GO:0001906" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell killing" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0001917 - a owl:Class ; - obo1:IAO_0000115 "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0001917" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "photoreceptor inner segment" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0002054 - a owl:Class ; - obo1:IAO_0000115 "Binding to a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0002054" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleobase binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0002376 - a owl:Class ; - obo1:IAO_0000115 "Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasDbXref "Wikipedia:Immune_system" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0002376" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501)." ; - rdfs:label "immune system process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0003674 - a owl:Class ; - obo1:IAO_0000115 "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." ; - oboInOwl:hasAlternativeId "GO:0005554" ; - oboInOwl:hasExactSynonym "molecular function" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0003674" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that, in addition to forming the root of the molecular function ontology, this term is recommended for use for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex." ; - rdfs:label "molecular_function" ; -. -obo1:GO_0003676 - a owl:Class ; - obo1:IAO_0000115 "Binding to a nucleic acid." ; - oboInOwl:hasAlternativeId "GO:0000496" ; - oboInOwl:hasNarrowSynonym "base pairing" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0003676" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "nucleic acid binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0003682 - a owl:Class ; - obo1:IAO_0000115 "Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase." ; - oboInOwl:hasNarrowSynonym "lamin/chromatin binding" ; - oboInOwl:hasNarrowSynonym "microtubule/chromatin interaction" ; - oboInOwl:hasNarrowSynonym "nuclear membrane vesicle binding to chromatin" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0003682" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "chromatin binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0003774 - a owl:Class ; - obo1:IAO_0000115 "Generation of force resulting in movement, for example along a microfilament or microtubule, or in torque resulting in membrane scission or rotation of a flagellum. The energy required is obtained either from the hydrolysis of a nucleoside triphosphate or by an electrochemical proton gradient (proton-motive force)." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/19590"^^xsd:anyURI ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21756"^^xsd:anyURI ; - oboInOwl:hasBroadSynonym "motor activity" ; - oboInOwl:hasDbXref "Reactome:R-HSA-1861595" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0003774" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cytoskeletal motor activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0003823 - a owl:Class ; - obo1:IAO_0000115 "Binding to an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "B cell receptor activity" ; - oboInOwl:hasRelatedSynonym "antibody" ; - oboInOwl:hasRelatedSynonym "immunoglobulin" ; - oboInOwl:hasRelatedSynonym "opsonin activity" ; - oboInOwl:id "GO:0003823" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "antigen binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0003824 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." ; - oboInOwl:hasDbXref "Wikipedia:Enzyme" ; - oboInOwl:hasExactSynonym "enzyme activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0003824" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "catalytic activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0004133 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the cleavage of branch points in branched glycogen polymers." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0004133" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycogen debranching enzyme activity" ; - rdfs:subClassOf obo1:GO_0003824 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005976 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0006112 ; - ] ; -. -obo1:GO_0004386 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21393"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0008026" ; - oboInOwl:hasDbXref "Reactome:R-HSA-169461" ; - oboInOwl:hasDbXref "Reactome:R-HSA-169468" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5686410" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5690996" ; - oboInOwl:hasExactSynonym "ATP-dependent helicase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0004386" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that most helicases catalyze processive duplex unwinding." ; - rdfs:label "helicase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016787 ; - ] ; -. -obo1:GO_0004497 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water." ; - oboInOwl:hasDbXref "Reactome:R-HSA-143468" ; - oboInOwl:hasDbXref "Reactome:R-HSA-156526" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211882" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211904" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211910" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211919" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211924" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211929" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211948" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211951" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211959" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211960" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211962" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211968" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211988" ; - oboInOwl:hasDbXref "Reactome:R-HSA-211991" ; - oboInOwl:hasDbXref "Reactome:R-HSA-212004" ; - oboInOwl:hasDbXref "Reactome:R-HSA-212005" ; - oboInOwl:hasDbXref "Reactome:R-HSA-213175" ; - oboInOwl:hasDbXref "Reactome:R-HSA-215526" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2161795" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2161814" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2161890" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2161899" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2161940" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2162191" ; - oboInOwl:hasDbXref "Reactome:R-HSA-217258" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5423647" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5423664" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5423672" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5423678" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5602242" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5602272" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5602295" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5605147" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5662662" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5662692" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5663050" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6786239" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76354" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76373" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76386" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76397" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76416" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76426" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76434" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76456" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76466" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76472" ; - oboInOwl:hasDbXref "Reactome:R-HSA-76475" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8865107" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9018874" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027042" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027043" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027044" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027302" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027321" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9037761" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "hydroxylase activity" ; - oboInOwl:id "GO:0004497" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "monooxygenase activity" ; - rdfs:subClassOf obo1:GO_0016491 ; -. -obo1:GO_0004803 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element." ; - oboInOwl:hasAlternativeId "GO:0004804" ; - oboInOwl:hasNarrowSynonym "P-element encoded transposase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0004803" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transposase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0005198 - a owl:Class ; - obo1:IAO_0000115 "The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0005198" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "structural molecule activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0005215 - a owl:Class ; - obo1:IAO_0000115 "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." ; - oboInOwl:hasAlternativeId "GO:0005478" ; - oboInOwl:hasDbXref "EC:7.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-168313" ; - oboInOwl:hasDbXref "Reactome:R-HSA-178215" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "carrier" ; - oboInOwl:id "GO:0005215" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "Some transporters, such as certain members of the SLC family, are referred to as 'carriers'; however GO uses carrier with a different meaning: a carrier binds to and transports the substance (see GO:0140104 molecular carrier activity), whereas a transporter forms some pore that allows the passing of molecules." ; - rdfs:label "transporter activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0005488 - a owl:Class ; - obo1:IAO_0000115 "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." ; - oboInOwl:hasDbXref "Wikipedia:Binding_(molecular)" ; - oboInOwl:hasNarrowSynonym "ligand" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0005488" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "Note that this term is in the subset of terms that should not be used for direct, manual gene product annotation. Please choose a more specific child term, or request a new one if no suitable term is available. For ligands that bind to signal transducing receptors, consider the molecular function term 'receptor binding ; GO:0005102' and its children." ; - rdfs:label "binding" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0005496 - a owl:Class ; - obo1:IAO_0000115 "Binding to a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0005496" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "steroid binding" ; - rdfs:subClassOf obo1:GO_0008289 ; -. -obo1:GO_0005515 - a owl:Class ; - obo1:IAO_0000115 "Binding to a protein." ; - oboInOwl:hasAlternativeId "GO:0001948" ; - oboInOwl:hasAlternativeId "GO:0045308" ; - oboInOwl:hasExactSynonym "protein amino acid binding" ; - oboInOwl:hasNarrowSynonym "glycoprotein binding" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0005515" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "protein binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0005549 - a owl:Class ; - obo1:IAO_0000115 "Binding to an odorant, any substance capable of stimulating the sense of smell." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0005549" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "odorant binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0005575 - a owl:Class ; - obo1:IAO_0000115 "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." ; - oboInOwl:hasAlternativeId "GO:0008372" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1337158144" ; - oboInOwl:hasExactSynonym "cell or subcellular entity" ; - oboInOwl:hasExactSynonym "cellular component" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "subcellular entity" ; - oboInOwl:id "GO:0005575" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ; - rdfs:label "cellular_component" ; -. -obo1:GO_0005576 - a owl:Class ; - obo1:IAO_0000115 "The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite." ; - oboInOwl:hasDbXref "Wikipedia:Extracellular" ; - oboInOwl:hasExactSynonym "extracellular" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005576" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular space ; GO:0005615'." ; - rdfs:label "extracellular region" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0005618 - a owl:Class ; - obo1:IAO_0000115 "The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21669"^^xsd:anyURI ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - oboInOwl:hasDbXref "Wikipedia:Cell_wall" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005618" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment """Not to be used for manual annotation. Please choose a more specific term: for bacteria, annotate to GO:0009274; peptidoglycan-based cell wall, for -plants: annotate to GO:0009505 ; plant-type cell wall, for fungi: GO:0009277 ; fungal-type cell wall, and for archae, use GO:0030115 S-layer (see PMID:31214995).""" ; - rdfs:label "cell wall" ; - rdfs:subClassOf obo1:GO_0030312 ; -. -obo1:GO_0005634 - a owl:Class ; - obo1:IAO_0000115 "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1702920020" ; - oboInOwl:hasDbXref "Wikipedia:Cell_nucleus" ; - oboInOwl:hasExactSynonym "cell nucleus" ; - oboInOwl:hasNarrowSynonym "horsetail nucleus" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005634" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "nucleus" ; - rdfs:subClassOf obo1:GO_0043231 ; -. -obo1:GO_0005643 - a owl:Class ; - obo1:IAO_0000115 "A protein complex providing a discrete opening in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined." ; - oboInOwl:hasAlternativeId "GO:0005644" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao220861693" ; - oboInOwl:hasDbXref "Wikipedia:Nuclear_pore" ; - oboInOwl:hasExactSynonym "NPC" ; - oboInOwl:hasExactSynonym "nuclear pore complex" ; - oboInOwl:hasExactSynonym "nucleopore" ; - oboInOwl:hasNarrowSynonym "nuclear pore membrane protein" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005643" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nuclear pore" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0005663 - a owl:Class ; - obo1:IAO_0000115 "A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides." ; - obo1:RO_0002161 obo1:NCBITaxon_2 ; - oboInOwl:hasExactSynonym "RFC complex" ; - oboInOwl:hasExactSynonym "activator 1 complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005663" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA replication factor C complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0005667 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2013-08-28T12:11:37Z" ; - oboInOwl:hasAlternativeId "GO:0044797" ; - oboInOwl:hasAlternativeId "GO:0044798" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "cytoplasmic transcription factor complex" ; - oboInOwl:hasRelatedSynonym "nuclear transcription factor complex" ; - oboInOwl:hasRelatedSynonym "transcription factor complex" ; - oboInOwl:id "GO:0005667" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transcription regulator complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0005681 - a owl:Class ; - obo1:IAO_0000115 "Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA." ; - oboInOwl:hasBroadSynonym "spliceosome" ; - oboInOwl:hasDbXref "Wikipedia:Spliceosome" ; - oboInOwl:hasExactSynonym "spliceosome complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005681" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "spliceosomal complex" ; - rdfs:subClassOf obo1:GO_1990904 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0005694 - a owl:Class ; - obo1:IAO_0000115 "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information." ; - oboInOwl:hasDbXref "Wikipedia:Chromosome" ; - oboInOwl:hasNarrowSynonym "interphase chromosome" ; - oboInOwl:hasNarrowSynonym "prophase chromosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "chromatid" ; - oboInOwl:id "GO:0005694" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore." ; - rdfs:label "chromosome" ; - rdfs:subClassOf obo1:GO_0043232 ; -. -obo1:GO_0005697 - a owl:Class ; - obo1:IAO_0000115 "Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005697" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "telomerase holoenzyme complex" ; - rdfs:subClassOf obo1:GO_1990904 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0005730 - a owl:Class ; - obo1:IAO_0000115 "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1820400233" ; - oboInOwl:hasDbXref "Wikipedia:Nucleolus" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005730" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "nucleolus" ; - rdfs:subClassOf obo1:GO_0043232 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0005732 - a owl:Class ; - obo1:IAO_0000115 "A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/20416"^^xsd:anyURI ; - oboInOwl:hasNarrowSynonym "sRNP" ; - oboInOwl:hasNarrowSynonym "small nucleolar ribonucleoprotein complex" ; - oboInOwl:hasNarrowSynonym "small nucleolar ribonucleoprotein" ; - oboInOwl:hasNarrowSynonym "small ribonucleoprotein protein complex" ; - oboInOwl:hasNarrowSynonym "small ribonucleoprotein" ; - oboInOwl:hasNarrowSynonym "snoRNP" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005732" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that 'nucleolar' in the name acronym 'snoRNA' is part of the RNA family designation 'small nucleolar', and does not reflect the location of the complex. Both box C/D type and box H/ACA RNAs are found in Archaea (where they are referred to as sRNAs) as well as in Eukaryota. In eukaryotes, box H/ACA RNAs are found in both nucleolar-localized snoRNP complexes and in Cajal body-localized scaRNP complexes." ; - rdfs:label "sno(s)RNA-containing ribonucleoprotein complex" ; - rdfs:subClassOf obo1:GO_1990904 ; -. -obo1:GO_0005737 - a owl:Class ; - obo1:IAO_0000115 "The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." ; - oboInOwl:hasDbXref "Wikipedia:Cytoplasm" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005737" ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "cytoplasm" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0005739 - a owl:Class ; - obo1:IAO_0000115 "A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1860313010" ; - oboInOwl:hasDbXref "Wikipedia:Mitochondrion" ; - oboInOwl:hasExactSynonym "mitochondria" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005739" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Some anaerobic or microaerophilic organisms (e.g. Entamoeba histolytica, Giardia intestinalis and several Microsporidia species) do not have mitochondria, and contain mitochondrion-related organelles (MROs) instead, called mitosomes or hydrogenosomes, very likely derived from mitochondria. To annotate gene products located in these mitochondrial relics in species such as Entamoeba histolytica, Giardia intestinalis or others, please use GO:0032047 'mitosome' or GO:0042566 'hydrogenosome'. (See PMID:24316280 for a list of species currently known to contain mitochondrion-related organelles.)" ; - rdfs:label "mitochondrion" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005744 - a owl:Class ; - obo1:IAO_0000115 "The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor." ; - oboInOwl:hasBroadSynonym "mitochondrial inner membrane translocase complex" ; - oboInOwl:hasExactSynonym "Tim23 complex" ; - oboInOwl:hasExactSynonym "mitochondrial inner membrane pre-sequence translocase complex" ; - oboInOwl:hasExactSynonym "mitochondrial inner membrane presequence translocase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005744" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'." ; - rdfs:label "TIM23 mitochondrial import inner membrane translocase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005739 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0005768 - a owl:Class ; - obo1:IAO_0000115 "A vacuole to which materials ingested by endocytosis are delivered." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1720343330" ; - oboInOwl:hasDbXref "Wikipedia:Endosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005768" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "endosome" ; - rdfs:subClassOf obo1:GO_0031982 ; - rdfs:subClassOf obo1:GO_0043231 ; -. -obo1:GO_0005773 - a owl:Class ; - obo1:IAO_0000115 "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." ; - oboInOwl:hasDbXref "Wikipedia:Vacuole" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "vacuolar carboxypeptidase Y" ; - oboInOwl:id "GO:0005773" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "vacuole" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005783 - a owl:Class ; - obo1:IAO_0000115 "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1036339110" ; - oboInOwl:hasDbXref "Wikipedia:Endoplasmic_reticulum" ; - oboInOwl:hasExactSynonym "ER" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005783" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "endoplasmic reticulum" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005794 - a owl:Class ; - obo1:IAO_0000115 "A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways." ; - oboInOwl:hasBroadSynonym "Golgi" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao451912436" ; - oboInOwl:hasDbXref "Wikipedia:Golgi_apparatus" ; - oboInOwl:hasExactSynonym "Golgi complex" ; - oboInOwl:hasNarrowSynonym "Golgi ribbon" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005794" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that the Golgi apparatus can be located in various places in the cytoplasm. In plants and lower animal cells, the Golgi apparatus exists as many copies of discrete stacks dispersed throughout the cytoplasm, while the Golgi apparatus of interphase mammalian cells is a juxtanuclear, often pericentriolar reticulum, where the discrete Golgi stacks are stitched together to form a compact and interconnected ribbon, sometimes called the Golgi ribbon." ; - rdfs:label "Golgi apparatus" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005813 - a owl:Class ; - obo1:IAO_0000115 "A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle." ; - obo1:RO_0002161 obo1:NCBITaxon_27896 ; - obo1:RO_0002161 obo1:NCBITaxon_33090 ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - oboInOwl:hasDbXref "Wikipedia:Centrosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005813" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "centrosome" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005856 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0043232 ; - ] ; -. -obo1:GO_0005835 - a owl:Class ; - obo1:IAO_0000115 "A multienzyme complex that catalyses the synthesis of fatty acids from acetyl CoA." ; - oboInOwl:hasAlternativeId "GO:0031373" ; - oboInOwl:hasAlternativeId "GO:0031374" ; - oboInOwl:hasDbXref "Wikipedia:Fatty_acid_synthetase_complex" ; - oboInOwl:hasExactSynonym "FAS complex" ; - oboInOwl:hasExactSynonym "cytosolic FAS complex" ; - oboInOwl:hasExactSynonym "cytosolic fatty acid synthase complex" ; - oboInOwl:hasExactSynonym "cytosolic type I FAS complex" ; - oboInOwl:hasExactSynonym "cytosolic type I fatty acid synthase complex" ; - oboInOwl:hasExactSynonym "fatty acid synthetase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "holo-[acyl-carrier-protein] synthase complex" ; - oboInOwl:id "GO:0005835" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "fatty acid synthase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005840 - a owl:Class ; - obo1:IAO_0000115 "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." ; - oboInOwl:hasAlternativeId "GO:0033279" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1429207766" ; - oboInOwl:hasDbXref "Wikipedia:Ribosome" ; - oboInOwl:hasNarrowSynonym "free ribosome" ; - oboInOwl:hasNarrowSynonym "membrane bound ribosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "ribosomal RNA" ; - oboInOwl:id "GO:0005840" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "ribosome" ; - rdfs:subClassOf obo1:GO_0043232 ; -. -obo1:GO_0005844 - a owl:Class ; - obo1:IAO_0000115 "A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1038025871" ; - oboInOwl:hasDbXref "Wikipedia:Polysome" ; - oboInOwl:hasExactSynonym "polyribosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005844" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "polysome" ; - rdfs:subClassOf obo1:GO_1990904 ; -. -obo1:GO_0005849 - a owl:Class ; - obo1:IAO_0000115 "Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005849" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mRNA cleavage factor complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0005856 - a owl:Class ; - obo1:IAO_0000115 "Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles." ; - oboInOwl:hasDbXref "Wikipedia:Cytoskeleton" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005856" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "cytoskeleton" ; - rdfs:subClassOf obo1:GO_0043232 ; -. -obo1:GO_0005891 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential." ; - oboInOwl:hasExactSynonym "voltage gated calcium channel complex" ; - oboInOwl:hasExactSynonym "voltage-dependent calcium channel complex" ; - oboInOwl:hasExactSynonym "voltage-sensitive calcium channel complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005891" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "voltage-gated calcium channel complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0005902 - a owl:Class ; - obo1:IAO_0000115 "Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao671419673" ; - oboInOwl:hasDbXref "Wikipedia:Microvillus" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "microvilli" ; - oboInOwl:id "GO:0005902" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term refers to a projection from a single cell, and should not be confused with 'microvillus' as used to refer to a multicellular structure such as that found in the placenta." ; - rdfs:label "microvillus" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0005903 - a owl:Class ; - obo1:IAO_0000115 "The dense covering of microvilli on the apical surface of an epithelial cell in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell." ; - oboInOwl:hasDbXref "Wikipedia:Brush_border" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005903" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "brush border" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0005902 ; - ] ; -. -obo1:GO_0005929 - a owl:Class ; - obo1:IAO_0000115 "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body." ; - obo1:RO_0002161 obo1:NCBITaxon_3176 ; - obo1:RO_0002161 obo1:NCBITaxon_3312 ; - obo1:RO_0002161 obo1:NCBITaxon_3378 ; - obo1:RO_0002161 obo1:NCBITaxon_3398 ; - obo1:RO_0002161 obo1:NCBITaxon_4890 ; - obo1:RO_0002161 obo1:NCBITaxon_5782 ; - oboInOwl:hasAlternativeId "GO:0072372" ; - oboInOwl:hasDbXref "FMA:67181" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao787716553" ; - oboInOwl:hasDbXref "Wikipedia:Cilium" ; - oboInOwl:hasExactSynonym "eukaryotic flagellum" ; - oboInOwl:hasExactSynonym "microtubule-based flagellum" ; - oboInOwl:hasNarrowSynonym "primary cilium" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "flagellum" ; - oboInOwl:id "GO:0005929" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that we deem cilium and microtubule-based flagellum to be equivalent. In most eukaryotic species, intracellular sub-components of the cilium, such as the ciliary base and rootlet, are located near the plasma membrane. In Diplomonads such as Giardia, instead, the same ciliary parts are located further intracellularly. Also, 'cilium' may be used when axonemal structure and/or motility are unknown, or when axonemal structure is unusual. For all other cases, please refer to children of 'cilium'. Finally, note that any role of ciliary proteins in sensory events should be captured by annotating to relevant biological process terms." ; - rdfs:label "cilium" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf obo1:GO_0043226 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0030990 ; - ] ; -. -obo1:GO_0005930 - a owl:Class ; - obo1:IAO_0000115 "The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements." ; - oboInOwl:hasAlternativeId "GO:0035085" ; - oboInOwl:hasAlternativeId "GO:0035086" ; - oboInOwl:hasDbXref "Wikipedia:Axoneme" ; - oboInOwl:hasExactSynonym "ciliary axoneme" ; - oboInOwl:hasExactSynonym "cilium axoneme" ; - oboInOwl:hasExactSynonym "flagellar axoneme" ; - oboInOwl:hasExactSynonym "flagellum axoneme" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005930" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that cilia and eukaryotic flagella are deemed to be equivalent. In diplomonad species, such as Giardia, the axoneme may extend intracellularly up to 5um away from the plane of the plasma membrane." ; - rdfs:label "axoneme" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005856 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005929 ; - ] ; -. -obo1:GO_0005933 - a owl:Class ; - obo1:IAO_0000115 "A protuberance from a cell of an organism that reproduces by budding, which will grow larger and become a separate daughter cell after nuclear division, cytokinesis, and cell wall formation (when appropriate). The daughter cell may completely separate from the mother cell, or the mother and daughter cells may remain associated." ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005933" ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "cellular bud" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0005937 - a owl:Class ; - obo1:IAO_0000115 "The projection formed by unicellular fungi in response to mating pheromone." ; - oboInOwl:hasNarrowSynonym "conjugation tube" ; - oboInOwl:hasNarrowSynonym "shmoo" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005937" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mating projection" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0005942 - a owl:Class ; - obo1:IAO_0000115 "A protein complex capable of phosphatidylinositol 3-kinase activity and containing subunits of any phosphatidylinositol 3-kinase (PI3K) enzyme. These complexes are divided in three classes (called I, II and III) that differ for their presence across taxonomic groups and for the type of their constituents. Catalytic subunits of phosphatidylinositol 3-kinase enzymes are present in all 3 classes; regulatory subunits of phosphatidylinositol 3-kinase enzymes are present in classes I and III; adaptor proteins have been observed in class II complexes and may be present in other classes too." ; - oboInOwl:hasExactSynonym "1-phosphatidylinositol 3-kinase complex" ; - oboInOwl:hasExactSynonym "PI3K complex" ; - oboInOwl:hasExactSynonym "phosphoinositide 3-kinase complex" ; - oboInOwl:hasNarrowSynonym "PI3-kinase p85-subunit alpha- PI3-kinase p110 complex" ; - oboInOwl:hasNarrowSynonym "PIK3C3-PIK3R4 complex" ; - oboInOwl:hasNarrowSynonym "PIK3CA-PIK3R1 complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0005942" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "For discussion of membrane association, please see https://sourceforge.net/p/geneontology/ontology-requests/11559/" ; - rdfs:label "phosphatidylinositol 3-kinase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0005960 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T." ; - oboInOwl:hasAlternativeId "GO:0005961" ; - oboInOwl:hasAlternativeId "GO:0070015" ; - oboInOwl:hasDbXref "Wikipedia:Glycine_decarboxylase_complex" ; - oboInOwl:hasExactSynonym "glycine cleavage system" ; - oboInOwl:hasExactSynonym "glycine decarboxylase complex" ; - oboInOwl:hasExactSynonym "glycine dehydrogenase (decarboxylating) complex" ; - oboInOwl:hasExactSynonym "glycine synthase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "glycine dehydrogenase complex (decarboxylating)" ; - oboInOwl:id "GO:0005960" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycine cleavage complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0005975 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-10-23T15:40:34Z" ; - oboInOwl:hasAlternativeId "GO:0044261" ; - oboInOwl:hasAlternativeId "GO:0044723" ; - oboInOwl:hasDbXref "Wikipedia:Carbohydrate_metabolism" ; - oboInOwl:hasExactSynonym "carbohydrate metabolism" ; - oboInOwl:hasNarrowSynonym "multicellular organismal carbohydrate metabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-organism carbohydrate metabolic process" ; - oboInOwl:id "GO:0005975" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "carbohydrate metabolic process" ; - rdfs:subClassOf obo1:GO_0044238 ; -. -obo1:GO_0005976 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically." ; - oboInOwl:hasAlternativeId "GO:0044263" ; - oboInOwl:hasExactSynonym "polysaccharide metabolism" ; - oboInOwl:hasNarrowSynonym "glycan metabolic process" ; - oboInOwl:hasNarrowSynonym "glycan metabolism" ; - oboInOwl:hasNarrowSynonym "multicellular organismal polysaccharide metabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0005976" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "polysaccharide metabolic process" ; - rdfs:subClassOf obo1:GO_0005975 ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0006066 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom." ; - oboInOwl:hasExactSynonym "alcohol metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006066" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "alcohol metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006081 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "aldehyde metabolism" ; - oboInOwl:hasExactSynonym "alkanal metabolic process" ; - oboInOwl:hasExactSynonym "alkanal metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006081" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular aldehyde metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006082 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage." ; - oboInOwl:hasExactSynonym "organic acid metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006082" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organic acid metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006091 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances." ; - oboInOwl:hasBroadSynonym "energy pathways" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "intermediary metabolism" ; - oboInOwl:hasRelatedSynonym "metabolic energy generation" ; - oboInOwl:id "GO:0006091" ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "generation of precursor metabolites and energy" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006112 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways by which a cell derives energy from stored compounds such as fats or glycogen." ; - oboInOwl:hasExactSynonym "energy reserve metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006112" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "energy reserve metabolic process" ; - rdfs:subClassOf obo1:GO_0006091 ; -. -obo1:GO_0006113 - a owl:Class ; - obo1:IAO_0000115 "The anaerobic enzymatic conversion of organic compounds, especially carbohydrates, coupling the oxidation and reduction of NAD/H and the generation of adenosine triphosphate (ATP)." ; - oboInOwl:hasDbXref "MetaCyc:FERMENTATION-PWY" ; - oboInOwl:hasDbXref "Wikipedia:Fermentation_(biochemistry)" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006113" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "fermentation" ; - rdfs:subClassOf obo1:GO_0006091 ; -. -obo1:GO_0006119 - a owl:Class ; - obo1:IAO_0000115 "The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis." ; - oboInOwl:hasDbXref "Wikipedia:Oxidative_phosphorylation" ; - oboInOwl:hasExactSynonym "respiratory-chain phosphorylation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006119" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "oxidative phosphorylation" ; - rdfs:subClassOf obo1:GO_0045333 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0009117 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_1902600 ; - ] ; -. -obo1:GO_0006139 - a owl:Class ; - obo1:IAO_0000115 "Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." ; - oboInOwl:hasAlternativeId "GO:0055134" ; - oboInOwl:hasExactSynonym "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" ; - oboInOwl:hasExactSynonym "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism" ; - oboInOwl:hasExactSynonym "nucleobase, nucleoside, nucleotide and nucleic acid metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "nucleobase, nucleoside and nucleotide metabolic process" ; - oboInOwl:hasRelatedSynonym "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" ; - oboInOwl:id "GO:0006139" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "nucleobase-containing compound metabolic process" ; - rdfs:subClassOf obo1:GO_0006725 ; - rdfs:subClassOf obo1:GO_0006807 ; - rdfs:subClassOf obo1:GO_0044238 ; - rdfs:subClassOf obo1:GO_0046483 ; -. -obo1:GO_0006259 - a owl:Class ; - obo1:IAO_0000115 "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." ; - oboInOwl:hasAlternativeId "GO:0055132" ; - oboInOwl:hasExactSynonym "DNA metabolism" ; - oboInOwl:hasExactSynonym "cellular DNA metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006259" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "DNA metabolic process" ; - rdfs:subClassOf obo1:GO_0006139 ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0006260 - a owl:Class ; - obo1:IAO_0000115 "The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA." ; - oboInOwl:hasAlternativeId "GO:0055133" ; - oboInOwl:hasDbXref "Wikipedia:DNA_replication" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006260" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "DNA biosynthesis is only part of this process. See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'." ; - rdfs:label "DNA replication" ; - rdfs:subClassOf obo1:GO_0009059 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0006259 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0009059 ; - ] ; -. -obo1:GO_0006266 - a owl:Class ; - obo1:IAO_0000115 "The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006266" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA ligation" ; - rdfs:subClassOf obo1:GO_0006259 ; -. -obo1:GO_0006276 - a owl:Class ; - obo1:IAO_0000115 "The maintenance of the integrity of extrachromosomal plasmid DNA; includes processes that ensure plasmids are retained in the daughter cells after cell division." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006276" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "plasmid maintenance" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0006281 - a owl:Class ; - obo1:IAO_0000115 "The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway." ; - oboInOwl:hasDbXref "Wikipedia:DNA_repair" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006281" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "DNA repair" ; - rdfs:subClassOf obo1:GO_0006259 ; - rdfs:subClassOf obo1:GO_0050896 ; -. -obo1:GO_0006304 - a owl:Class ; - obo1:IAO_0000115 "The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006304" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA modification" ; - rdfs:subClassOf obo1:GO_0006259 ; - rdfs:subClassOf obo1:GO_0043412 ; -. -obo1:GO_0006323 - a owl:Class ; - obo1:IAO_0000115 "Any process in which DNA and associated proteins are formed into a compact, orderly structure." ; - oboInOwl:hasExactSynonym "DNA condensation" ; - oboInOwl:hasExactSynonym "DNA organisation" ; - oboInOwl:hasExactSynonym "DNA organization" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006323" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA packaging" ; - rdfs:subClassOf obo1:GO_0051276 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0003676 ; - ] ; -. -obo1:GO_0006351 - a owl:Class ; - obo1:IAO_0000115 "The cellular synthesis of RNA on a template of DNA." ; - oboInOwl:hasAlternativeId "GO:0006350" ; - oboInOwl:hasAlternativeId "GO:0061018" ; - oboInOwl:hasAlternativeId "GO:0061022" ; - oboInOwl:hasBroadSynonym "cellular transcription" ; - oboInOwl:hasBroadSynonym "transcription" ; - oboInOwl:hasDbXref "Wikipedia:Transcription_(genetics)" ; - oboInOwl:hasExactSynonym "DNA-dependent transcription" ; - oboInOwl:hasExactSynonym "cellular transcription, DNA-dependent" ; - oboInOwl:hasExactSynonym "transcription, DNA-dependent" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "transcription regulator activity" ; - oboInOwl:id "GO:0006351" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "transcription, DNA-templated" ; - rdfs:subClassOf obo1:GO_0009059 ; - rdfs:subClassOf obo1:GO_0016070 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; -. -obo1:GO_0006354 - a owl:Class ; - obo1:IAO_0000115 "The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase." ; - oboInOwl:hasBroadSynonym "RNA elongation" ; - oboInOwl:hasExactSynonym "DNA-dependent transcription, elongation" ; - oboInOwl:hasExactSynonym "transcription elongation, DNA-dependent" ; - oboInOwl:hasExactSynonym "transcriptional elongation, DNA-dependent" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006354" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "DNA-templated transcription, elongation" ; - rdfs:subClassOf obo1:GO_0009059 ; - rdfs:subClassOf obo1:GO_0016070 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0006351 ; - ] ; -. -obo1:GO_0006396 - a owl:Class ; - obo1:IAO_0000115 "Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules." ; - oboInOwl:hasAlternativeId "GO:0006394" ; - oboInOwl:hasDbXref "Wikipedia:Post-transcriptional_modification" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006396" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "RNA processing" ; - rdfs:subClassOf obo1:GO_0016070 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; -. -obo1:GO_0006412 - a owl:Class ; - obo1:IAO_0000115 "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome." ; - oboInOwl:hasAlternativeId "GO:0006416" ; - oboInOwl:hasAlternativeId "GO:0006453" ; - oboInOwl:hasAlternativeId "GO:0043037" ; - oboInOwl:hasDbXref "Wikipedia:Translation_(genetics)" ; - oboInOwl:hasExactSynonym "protein anabolism" ; - oboInOwl:hasExactSynonym "protein biosynthesis" ; - oboInOwl:hasExactSynonym "protein biosynthetic process" ; - oboInOwl:hasExactSynonym "protein formation" ; - oboInOwl:hasExactSynonym "protein synthesis" ; - oboInOwl:hasExactSynonym "protein translation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006412" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "translation" ; - rdfs:subClassOf obo1:GO_0006518 ; - rdfs:subClassOf obo1:GO_0009059 ; - rdfs:subClassOf obo1:GO_0019538 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0009059 ; - ] ; -. -obo1:GO_0006457 - a owl:Class ; - obo1:IAO_0000115 "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure." ; - oboInOwl:hasAlternativeId "GO:0007022" ; - oboInOwl:hasAlternativeId "GO:0007024" ; - oboInOwl:hasAlternativeId "GO:0007025" ; - oboInOwl:hasDbXref "Wikipedia:Protein_folding" ; - oboInOwl:hasNarrowSynonym "alpha-tubulin folding" ; - oboInOwl:hasNarrowSynonym "beta-tubulin folding" ; - oboInOwl:hasNarrowSynonym "chaperonin-mediated tubulin folding" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "chaperone activity" ; - oboInOwl:hasRelatedSynonym "chaperonin ATPase activity" ; - oboInOwl:hasRelatedSynonym "co-chaperone activity" ; - oboInOwl:hasRelatedSynonym "co-chaperonin activity" ; - oboInOwl:hasRelatedSynonym "glycoprotein-specific chaperone activity" ; - oboInOwl:hasRelatedSynonym "non-chaperonin molecular chaperone ATPase activity" ; - oboInOwl:hasRelatedSynonym "protein complex assembly, multichaperone pathway" ; - oboInOwl:id "GO:0006457" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "protein folding" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0006464 - a owl:Class ; - obo1:IAO_0000115 "The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification)." ; - oboInOwl:hasBroadSynonym "protein modification process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "process resulting in protein modification" ; - oboInOwl:hasRelatedSynonym "protein tagging activity" ; - oboInOwl:id "GO:0006464" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cellular protein modification process" ; - rdfs:subClassOf obo1:GO_0019538 ; - rdfs:subClassOf obo1:GO_0043412 ; -. -obo1:GO_0006508 - a owl:Class ; - obo1:IAO_0000115 "The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds." ; - oboInOwl:hasDbXref "Wikipedia:Proteolysis" ; - oboInOwl:hasExactSynonym "peptidolysis" ; - oboInOwl:hasNarrowSynonym "ATP-dependent proteolysis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006508" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "This term was intentionally placed under 'protein metabolic process ; GO:0019538' rather than 'protein catabolic process ; GO:0030163' to cover all processes centered on breaking peptide bonds, including those involved in protein processing." ; - rdfs:label "proteolysis" ; - rdfs:subClassOf obo1:GO_0019538 ; -. -obo1:GO_0006518 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." ; - oboInOwl:hasExactSynonym "peptide metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006518" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "peptide metabolic process" ; - rdfs:subClassOf obo1:GO_0043603 ; -. -obo1:GO_0006520 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells." ; - oboInOwl:hasAlternativeId "GO:0006519" ; - oboInOwl:hasExactSynonym "amino acid and derivative metabolism" ; - oboInOwl:hasExactSynonym "amino acid metabolic process" ; - oboInOwl:hasExactSynonym "cellular amino acid and derivative metabolic process" ; - oboInOwl:hasExactSynonym "cellular amino acid metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006520" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "cellular amino acid metabolic process" ; - rdfs:subClassOf obo1:GO_0006082 ; - rdfs:subClassOf obo1:GO_0006807 ; - rdfs:subClassOf obo1:GO_0044238 ; -. -obo1:GO_0006629 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids." ; - oboInOwl:hasDbXref "Wikipedia:Lipid_metabolism" ; - oboInOwl:hasExactSynonym "lipid metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006629" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "lipid metabolic process" ; - rdfs:subClassOf obo1:GO_0044238 ; -. -obo1:GO_0006662 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol." ; - oboInOwl:hasExactSynonym "glycerol ether metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006662" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycerol ether metabolic process" ; - rdfs:subClassOf obo1:GO_0018904 ; -. -obo1:GO_0006725 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "aromatic compound metabolism" ; - oboInOwl:hasNarrowSynonym "aromatic hydrocarbon metabolic process" ; - oboInOwl:hasNarrowSynonym "aromatic hydrocarbon metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006725" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular aromatic compound metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006730 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states." ; - oboInOwl:hasAlternativeId "GO:0019753" ; - oboInOwl:hasAlternativeId "GO:0019754" ; - oboInOwl:hasDbXref "UM-BBD_pathwayID:C1cyc" ; - oboInOwl:hasExactSynonym "one carbon metabolic process" ; - oboInOwl:hasExactSynonym "one carbon metabolism" ; - oboInOwl:hasExactSynonym "one-carbon metabolism" ; - oboInOwl:hasExactSynonym "one-carbon transfer metabolic process" ; - oboInOwl:hasExactSynonym "one-carbon transfer metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006730" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "one-carbon metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006766 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems." ; - oboInOwl:hasExactSynonym "vitamin metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006766" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "vitamin metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006790 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." ; - oboInOwl:hasDbXref "Wikipedia:Sulfur_metabolism" ; - oboInOwl:hasExactSynonym "sulfur metabolism" ; - oboInOwl:hasExactSynonym "sulphur metabolic process" ; - oboInOwl:hasExactSynonym "sulphur metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006790" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "sulfur compound metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006793 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." ; - oboInOwl:hasExactSynonym "phosphorus metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006793" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "phosphorus metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006805 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide." ; - oboInOwl:hasDbXref "Wikipedia:Xenobiotic_metabolism" ; - oboInOwl:hasExactSynonym "xenobiotic metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006805" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "xenobiotic metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050896 ; - ] ; -. -obo1:GO_0006807 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen." ; - oboInOwl:hasExactSynonym "nitrogen compound metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006807" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nitrogen compound metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006810 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-12-13T16:25:32Z" ; - oboInOwl:hasAlternativeId "GO:0015457" ; - oboInOwl:hasAlternativeId "GO:0015460" ; - oboInOwl:hasAlternativeId "GO:0044765" ; - oboInOwl:hasNarrowSynonym "small molecule transport" ; - oboInOwl:hasNarrowSynonym "solute:solute exchange" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-organism transport" ; - oboInOwl:id "GO:0006810" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "Note that this term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term, for e.g. to transmembrane transport, to microtubule-based transport or to vesicle-mediated transport." ; - rdfs:label "transport" ; - rdfs:subClassOf obo1:GO_0051234 ; -. -obo1:GO_0006811 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006811" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "ion transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0006836 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell." ; - oboInOwl:hasNarrowSynonym "sodium:neurotransmitter transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006836" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "neurotransmitter transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0006865 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasAlternativeId "GO:0006866" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006865" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "amino acid transport" ; - rdfs:subClassOf obo1:GO_0015849 ; -. -obo1:GO_0006869 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006869" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "lipid transport" ; - rdfs:subClassOf obo1:GO_0006810 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0051179 ; - ] ; -. -obo1:GO_0006914 - a owl:Class ; - obo1:IAO_0000115 "The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation." ; - oboInOwl:hasAlternativeId "GO:0016238" ; - oboInOwl:hasDbXref "Wikipedia:Autophagy_(cellular)" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006914" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "autophagy" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0006928 - a owl:Class ; - obo1:IAO_0000115 "The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore." ; - oboInOwl:hasExactSynonym "cellular component motion" ; - oboInOwl:hasExactSynonym "cellular component movement" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell movement" ; - oboInOwl:id "GO:0006928" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that in GO cellular components include whole cells (cell is_a cellular component)." ; - rdfs:label "movement of cell or subcellular component" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0006936 - a owl:Class ; - obo1:IAO_0000115 "A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis." ; - oboInOwl:hasDbXref "Wikipedia:Muscle_contraction" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006936" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "muscle contraction" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0006949 - a owl:Class ; - obo1:IAO_0000115 "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0006949" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "syncytium formation" ; - rdfs:subClassOf obo1:GO_0032502 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0032502 ; - ] ; -. -obo1:GO_0006996 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2013-12-19T15:25:51Z" ; - oboInOwl:hasAlternativeId "GO:1902589" ; - oboInOwl:hasExactSynonym "organelle organisation" ; - oboInOwl:hasExactSynonym "single organism organelle organization" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "organelle organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "single-organism organelle organization" ; - oboInOwl:id "GO:0006996" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organelle organization" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0006997 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus." ; - oboInOwl:hasAlternativeId "GO:0048287" ; - oboInOwl:hasExactSynonym "nuclear organisation" ; - oboInOwl:hasExactSynonym "nuclear organization" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "nuclear morphology" ; - oboInOwl:hasRelatedSynonym "nuclear organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "nucleus organization and biogenesis" ; - oboInOwl:id "GO:0006997" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "nucleus organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0007005 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components." ; - oboInOwl:hasExactSynonym "mitochondria organization" ; - oboInOwl:hasExactSynonym "mitochondrion organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "mitochondrion organization and biogenesis" ; - oboInOwl:id "GO:0007005" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "mitochondrion organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0007028 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." ; - oboInOwl:hasExactSynonym "cytoplasm organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cytoplasm organization and biogenesis" ; - oboInOwl:id "GO:0007028" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cytoplasm organization" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0007029 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum." ; - oboInOwl:hasExactSynonym "ER organisation" ; - oboInOwl:hasExactSynonym "endoplasmic reticulum organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "ER organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "endoplasmic reticulum morphology" ; - oboInOwl:hasRelatedSynonym "endoplasmic reticulum organization and biogenesis" ; - oboInOwl:id "GO:0007029" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endoplasmic reticulum organization" ; - rdfs:subClassOf obo1:GO_0006996 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016043 ; - ] ; -. -obo1:GO_0007030 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus." ; - oboInOwl:hasExactSynonym "Golgi organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "Golgi organization and biogenesis" ; - oboInOwl:id "GO:0007030" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "Golgi organization" ; - rdfs:subClassOf obo1:GO_0006996 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016043 ; - ] ; -. -obo1:GO_0007031 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules." ; - oboInOwl:hasExactSynonym "peroxisome organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "peroxisome organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "peroxisome-assembly ATPase activity" ; - oboInOwl:id "GO:0007031" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "peroxisome organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0007032 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes." ; - oboInOwl:hasExactSynonym "endosome organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "endosome organization and biogenesis" ; - oboInOwl:id "GO:0007032" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endosome organization" ; - rdfs:subClassOf obo1:GO_0016050 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016043 ; - ] ; -. -obo1:GO_0007033 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole." ; - oboInOwl:hasAlternativeId "GO:0044086" ; - oboInOwl:hasExactSynonym "vacuole organisation" ; - oboInOwl:hasNarrowSynonym "vacuolar assembly" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "vacuole biogenesis" ; - oboInOwl:hasRelatedSynonym "vacuole organization and biogenesis" ; - oboInOwl:id "GO:0007033" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "vacuole organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0007049 - a owl:Class ; - obo1:IAO_0000115 "The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division." ; - oboInOwl:hasDbXref "Wikipedia:Cell_cycle" ; - oboInOwl:hasExactSynonym "cell-division cycle" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0007049" ; - oboInOwl:inSubset go:gocheck_do_not_manually_annotate ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cell cycle" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0007059 - a owl:Class ; - obo1:IAO_0000115 "The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles." ; - oboInOwl:hasDbXref "Wikipedia:Chromosome_segregation" ; - oboInOwl:hasExactSynonym "chromosome division" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "chromosome transmission" ; - oboInOwl:id "GO:0007059" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "chromosome segregation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0007154 - a owl:Class ; - obo1:IAO_0000115 "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." ; - oboInOwl:hasDbXref "Wikipedia:Cell_signaling" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0007154" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cell communication" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0007155 - a owl:Class ; - obo1:IAO_0000115 "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules." ; - oboInOwl:created_by "dos" ; - oboInOwl:creation_date "2014-04-15T15:59:10Z" ; - oboInOwl:hasAlternativeId "GO:0098602" ; - oboInOwl:hasDbXref "Wikipedia:Cell_adhesion" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell adhesion molecule activity" ; - oboInOwl:hasRelatedSynonym "single organism cell adhesion" ; - oboInOwl:id "GO:0007155" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "cell adhesion" ; - rdfs:subClassOf obo1:GO_0022610 ; -. -obo1:GO_0007586 - a owl:Class ; - obo1:IAO_0000115 "The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." ; - oboInOwl:hasDbXref "Wikipedia:Digestion" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0007586" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "digestion" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0007588 - a owl:Class ; - obo1:IAO_0000115 "The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." ; - oboInOwl:hasDbXref "Wikipedia:Excretion" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0007588" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "excretion" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0008015 - a owl:Class ; - obo1:IAO_0000115 "The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products." ; - oboInOwl:hasAlternativeId "GO:0070261" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "hemolymph circulation" ; - oboInOwl:id "GO:0008015" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "blood circulation" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0008023 - a owl:Class ; - obo1:IAO_0000115 "Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0008023" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transcription elongation factor complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0008037 - a owl:Class ; - obo1:IAO_0000115 "The process in which a cell in an organism interprets its surroundings." ; - oboInOwl:hasExactSynonym "recognition of surroundings by cell" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0008037" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell recognition" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0008144 - a owl:Class ; - obo1:IAO_0000115 "Binding to a drug, a naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism;typically used in the diagnosis, prevention, or treatment of disease." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0008144" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "drug binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0008150 - a owl:Class ; - obo1:IAO_0000115 "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-09-19T15:05:24Z" ; - oboInOwl:hasAlternativeId "GO:0000004" ; - oboInOwl:hasAlternativeId "GO:0007582" ; - oboInOwl:hasAlternativeId "GO:0044699" ; - oboInOwl:hasDbXref "Wikipedia:Biological_process" ; - oboInOwl:hasExactSynonym "biological process" ; - oboInOwl:hasExactSynonym "physiological process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single organism process" ; - oboInOwl:hasRelatedSynonym "single-organism process" ; - oboInOwl:id "GO:0008150" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this." ; - rdfs:label "biological_process" ; -. -obo1:GO_0008152 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-10-17T15:46:40Z" ; - oboInOwl:hasAlternativeId "GO:0044236" ; - oboInOwl:hasAlternativeId "GO:0044710" ; - oboInOwl:hasDbXref "Wikipedia:Metabolism" ; - oboInOwl:hasExactSynonym "metabolism" ; - oboInOwl:hasNarrowSynonym "metabolic process resulting in cell growth" ; - oboInOwl:hasNarrowSynonym "metabolism resulting in cell growth" ; - oboInOwl:hasNarrowSynonym "multicellular organism metabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-organism metabolic process" ; - oboInOwl:id "GO:0008152" ; - oboInOwl:inSubset go:gocheck_do_not_manually_annotate ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions." ; - rdfs:label "metabolic process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0008233 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid." ; - oboInOwl:hasAlternativeId "GO:0070010" ; - oboInOwl:hasAlternativeId "GO:0070011" ; - oboInOwl:hasDbXref "EC:3.4.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-205112" ; - oboInOwl:hasDbXref "Reactome:R-HSA-3000243" ; - oboInOwl:hasDbXref "Reactome:R-HSA-3065958" ; - oboInOwl:hasDbXref "Reactome:R-HSA-3065959" ; - oboInOwl:hasDbXref "Reactome:R-HSA-3139027" ; - oboInOwl:hasDbXref "Reactome:R-HSA-376149" ; - oboInOwl:hasDbXref "Reactome:R-HSA-4167501" ; - oboInOwl:hasDbXref "Reactome:R-HSA-448678" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5655483" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5684864" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5685902" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5693319" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6803060" ; - oboInOwl:hasExactSynonym "hydrolase, acting on peptide bonds" ; - oboInOwl:hasExactSynonym "peptide hydrolase activity" ; - oboInOwl:hasExactSynonym "protease activity" ; - oboInOwl:hasNarrowSynonym "peptidase activity, acting on D-amino acid peptides" ; - oboInOwl:hasNarrowSynonym "peptidase activity, acting on L-amino acid peptides" ; - oboInOwl:hasNarrowSynonym "proteinase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0008233" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "peptidase activity" ; - rdfs:subClassOf obo1:GO_0016787 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0006508 ; - ] ; -. -obo1:GO_0008278 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3)." ; - oboInOwl:hasAlternativeId "GO:0008279" ; - oboInOwl:hasAlternativeId "GO:0008280" ; - oboInOwl:hasAlternativeId "GO:0043222" ; - oboInOwl:hasExactSynonym "SMC/kleisin ring complex" ; - oboInOwl:hasNarrowSynonym "14S cohesin" ; - oboInOwl:hasNarrowSynonym "9S cohesin" ; - oboInOwl:hasNarrowSynonym "Smc1-Smc3 complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "SMC complex" ; - oboInOwl:hasRelatedSynonym "cohesin core heterodimer" ; - oboInOwl:id "GO:0008278" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cohesin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0008283 - a owl:Class ; - obo1:IAO_0000115 "The multiplication or reproduction of cells, resulting in the expansion of a cell population." ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell proliferation" ; - oboInOwl:id "GO:0008283" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "This term was moved out from being a child of 'cellular process' because it is a cell population-level process, and cellular processes are restricted to those processes that involve individual cells. Also note that this term is intended to be used for the proliferation of cells within a multicellular organism, not for the expansion of a population of single-celled organisms." ; - rdfs:label "cell population proliferation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0008287 - a owl:Class ; - obo1:IAO_0000115 "A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0008287" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "protein serine/threonine phosphatase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0008289 - a owl:Class ; - obo1:IAO_0000115 "Binding to a lipid." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0008289" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "lipid binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0008290 - a owl:Class ; - obo1:IAO_0000115 "A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0008290" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "F-actin capping protein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005856 ; - ] ; -. -obo1:GO_0008641 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/14208"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0008642" ; - oboInOwl:hasNarrowSynonym "small protein activating enzyme activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0008641" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ubiquitin-like modifier activating enzyme activity" ; - rdfs:subClassOf obo1:GO_0016874 ; -. -obo1:GO_0008643 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are a group of organic compounds based of the general formula Cx(H2O)y." ; - oboInOwl:hasAlternativeId "GO:0006861" ; - oboInOwl:hasAlternativeId "GO:0008644" ; - oboInOwl:hasNarrowSynonym "sugar transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0008643" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "carbohydrate transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0008655 - a owl:Class ; - obo1:IAO_0000115 "Any process that generates a pyrimidine-containing compound, a nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "pyrimidine salvage" ; - oboInOwl:id "GO:0008655" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pyrimidine-containing compound salvage" ; - rdfs:subClassOf obo1:GO_0006139 ; - rdfs:subClassOf obo1:GO_0043094 ; -. -obo1:GO_0008907 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the integration of one DNA segment into another." ; - oboInOwl:hasDbXref "Reactome:R-HSA-164523" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0008907" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "integrase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0015074 ; - ] ; -. -obo1:GO_0009009 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the formation of new phosphodiester bonds between a pair of short, unique target DNA sequences." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/3917"^^xsd:anyURI ; - oboInOwl:hasExactSynonym "RecA-family recombinase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0009009" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is not a child of 'recombinase activity ; GO:0000150' because the latter represents activities that do not break or form phosphodiester bonds." ; - rdfs:label "site-specific recombinase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0009055 - a owl:Class ; - obo1:IAO_0000115 "Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21334"^^xsd:anyURI ; - oboInOwl:hasAlternativeId "GO:0009053" ; - oboInOwl:hasAlternativeId "GO:0009054" ; - oboInOwl:hasDbXref "Reactome:R-HSA-169260" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2564826" ; - oboInOwl:hasNarrowSynonym "electron acceptor activity" ; - oboInOwl:hasNarrowSynonym "electron donor activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "electron carrier" ; - oboInOwl:hasRelatedSynonym "electron transporter activity" ; - oboInOwl:id "GO:0009055" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term should only be be used for electron transfer that generates a transmembrane electrochemical gradient, e.g. components of the respiratory or photosynthetic electron transport chain." ; - rdfs:label "electron transfer activity" ; - rdfs:subClassOf obo1:GO_0016491 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0022900 ; - ] ; - owl:equivalentClass [ - a owl:Class ; - owl:intersectionOf ( - obo1:GO_0016491 - [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0022900 ; - ] - ) ; - ] ; -. -obo1:GO_0009057 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways resulting in the breakdown of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; - oboInOwl:hasAlternativeId "GO:0043285" ; - oboInOwl:hasAlternativeId "GO:0044266" ; - oboInOwl:hasExactSynonym "biopolymer catabolic process" ; - oboInOwl:hasExactSynonym "macromolecule breakdown" ; - oboInOwl:hasExactSynonym "macromolecule catabolism" ; - oboInOwl:hasExactSynonym "macromolecule degradation" ; - oboInOwl:hasNarrowSynonym "multicellular organismal macromolecule catabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009057" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "macromolecule catabolic process" ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0009059 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; - oboInOwl:hasAlternativeId "GO:0043284" ; - oboInOwl:hasExactSynonym "biopolymer biosynthetic process" ; - oboInOwl:hasExactSynonym "macromolecule anabolism" ; - oboInOwl:hasExactSynonym "macromolecule biosynthesis" ; - oboInOwl:hasExactSynonym "macromolecule formation" ; - oboInOwl:hasExactSynonym "macromolecule synthesis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009059" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "macromolecule biosynthetic process" ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0009116 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)." ; - oboInOwl:hasExactSynonym "nucleoside metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009116" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleoside metabolic process" ; - rdfs:subClassOf obo1:GO_0006139 ; -. -obo1:GO_0009117 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." ; - oboInOwl:hasExactSynonym "nucleotide metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009117" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleotide metabolic process" ; - rdfs:subClassOf obo1:GO_0006139 ; - rdfs:subClassOf obo1:GO_0006793 ; -. -obo1:GO_0009225 - a owl:Class ; - obo1:IAO_0000115 "The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/14587"^^xsd:anyURI ; - oboInOwl:hasExactSynonym "nucleotide-sugar metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009225" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleotide-sugar metabolic process" ; - rdfs:subClassOf obo1:GO_0006139 ; -. -obo1:GO_0009288 - a owl:Class ; - obo1:IAO_0000115 "A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope." ; - oboInOwl:hasExactSynonym "flagellin-based flagellum" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009288" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "bacterial-type flagellum" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf obo1:GO_0043226 ; -. -obo1:GO_0009289 - a owl:Class ; - obo1:IAO_0000115 "A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter." ; - oboInOwl:hasDbXref "Wikipedia:Pilus" ; - oboInOwl:hasExactSynonym "fimbria" ; - oboInOwl:hasExactSynonym "fimbriae" ; - oboInOwl:hasExactSynonym "fimbrium" ; - oboInOwl:hasExactSynonym "pili" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009289" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pilus" ; - rdfs:subClassOf obo1:GO_0042995 ; -. -obo1:GO_0009292 - a owl:Class ; - obo1:IAO_0000115 "In the absence of a sexual life cycle, the process involved in the introduction of genetic information to create a genetically different individual." ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - oboInOwl:hasBroadSynonym "genetic exchange" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009292" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "GO:0009292 should not be used for annotation of phage lysogeny (integration of the bacteriophage nucleic acid into the host bacterium's genome)." ; - rdfs:label "genetic transfer" ; - rdfs:subClassOf obo1:GO_0051704 ; -. -obo1:GO_0009308 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom." ; - oboInOwl:hasExactSynonym "amine metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009308" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amine metabolic process" ; - rdfs:subClassOf obo1:GO_0006807 ; -. -obo1:GO_0009317 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex." ; - oboInOwl:hasExactSynonym "ACCase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009317" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "acetyl-CoA carboxylase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0009368 - a owl:Class ; - obo1:IAO_0000115 "A protein complex comprised of members of the ClpX, ClpC, ClpD, ClpP or ClpR protein families. ClpPs are the proteolytic subunit of active complexes, and ClpA and ClpX form the regulatory subunits. Enzymatically active and inactive complexes can form." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009368" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endopeptidase Clp complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0009372 - a owl:Class ; - obo1:IAO_0000115 "The cell-cell signaling process in which single-celled organisms carry out coordinated responses by monitoring their own population density, and often also that of other microbes, by producing small, diffusible, signal molecules, detecting the concentration of these molecules, and triggering a signal transduction pathway when a certain threshold is reached. Quorum sensing can occur amongst microbial communities in the environment or within host organisms." ; - oboInOwl:hasAlternativeId "GO:0010699" ; - oboInOwl:hasAlternativeId "GO:0060247" ; - oboInOwl:hasDbXref "Wikipedia:Quorum_sensing" ; - oboInOwl:hasExactSynonym "quorum sensing system" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell-cell signaling involved in quorum sensing" ; - oboInOwl:hasRelatedSynonym "detection of cell density by secreted molecule" ; - oboInOwl:id "GO:0009372" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "quorum sensing" ; - rdfs:subClassOf obo1:GO_0007154 ; - rdfs:subClassOf obo1:GO_0051606 ; - rdfs:subClassOf obo1:GO_0051704 ; -. -obo1:GO_0009404 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism." ; - oboInOwl:hasExactSynonym "toxin metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009404" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "toxin metabolic process" ; - rdfs:subClassOf obo1:GO_0019748 ; -. -obo1:GO_0009521 - a owl:Class ; - obo1:IAO_0000115 "A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species." ; - oboInOwl:hasAlternativeId "GO:0030090" ; - oboInOwl:hasDbXref "Wikipedia:Photosystem" ; - oboInOwl:hasNarrowSynonym "reaction center" ; - oboInOwl:hasNarrowSynonym "reaction centre" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009521" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "photosystem" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0009579 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0009536 - a owl:Class ; - obo1:IAO_0000115 "Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." ; - obo1:RO_0002161 obo1:NCBITaxon_2 ; - obo1:RO_0002161 obo1:NCBITaxon_2157 ; - obo1:RO_0002161 obo1:NCBITaxon_28009 ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - obo1:RO_0002161 obo1:NCBITaxon_554915 ; - oboInOwl:hasDbXref "Wikipedia:Plastid" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009536" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "plastid" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0009579 - a owl:Class ; - obo1:IAO_0000115 "A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation." ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - oboInOwl:hasDbXref "Wikipedia:Thylakoid" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "photosynthetic membrane" ; - oboInOwl:id "GO:0009579" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "A thylakoid is not considered an organelle, but some thylakoids are part of organelles." ; - rdfs:label "thylakoid" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0009657 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid." ; - obo1:RO_0002161 obo1:NCBITaxon_28009 ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - obo1:RO_0002161 obo1:NCBITaxon_554915 ; - oboInOwl:hasExactSynonym "plastid organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "plastid organization and biogenesis" ; - oboInOwl:id "GO:0009657" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "plastid organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0009914 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0009914" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "hormone transport" ; - rdfs:subClassOf obo1:GO_0006810 ; - rdfs:subClassOf obo1:GO_0065008 ; -. -obo1:GO_0009975 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of a ring closure reaction." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0009975" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cyclase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0009986 - a owl:Class ; - obo1:IAO_0000115 "The external part of the cell wall and/or plasma membrane." ; - oboInOwl:hasAlternativeId "GO:0009928" ; - oboInOwl:hasAlternativeId "GO:0009929" ; - oboInOwl:hasExactSynonym "cell associated" ; - oboInOwl:hasExactSynonym "cell bound" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0009986" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is intended to annotate gene products that are attached (integrated or loosely bound) to the plasma membrane or cell wall." ; - rdfs:label "cell surface" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0010118 - a owl:Class ; - obo1:IAO_0000115 "The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata)." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0010118" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "stomatal movement" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0010191 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving mucilage, a gelatinous substance secreted by plants." ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasExactSynonym "mucilage metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0010191" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mucilage metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0010316 - a owl:Class ; - obo1:IAO_0000115 "Heterodimeric complex that catalyzes the pyrophosphate-dependent phosphorylation of D-fructose 6-phosphate into D-fructose 1,6-bisphosphate." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "PFK complex" ; - oboInOwl:id "GO:0010316" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pyrophosphate-dependent phosphofructokinase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0015031 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasAlternativeId "GO:0015831" ; - oboInOwl:hasNarrowSynonym "enzyme transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015031" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "protein transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015074 - a owl:Class ; - obo1:IAO_0000115 "The process in which a DNA segment is incorporated into another, usually larger, DNA molecule such as a chromosome." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015074" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA integration" ; - rdfs:subClassOf obo1:GO_0006259 ; -. -obo1:GO_0015669 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of substances that are gaseous in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015669" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "gas transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015791 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of polyols, any polyhydric alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015791" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "polyol transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015833 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015833" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "peptide transport" ; - rdfs:subClassOf obo1:GO_0042886 ; -. -obo1:GO_0015835 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of peptidoglycans, a class of glycoconjugates found in bacterial cell walls, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasExactSynonym "murein transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015835" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "peptidoglycan transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015837 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "amine/polyamine transport" ; - oboInOwl:id "GO:0015837" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amine transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015849 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015849" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organic acid transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015891 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasAlternativeId "GO:0015892" ; - oboInOwl:hasExactSynonym "iron-siderophore transport" ; - oboInOwl:hasExactSynonym "siderophore-iron transport" ; - oboInOwl:hasNarrowSynonym "iron-siderochrome transport" ; - oboInOwl:hasNarrowSynonym "siderochrome transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015891" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "siderophore transport" ; - rdfs:subClassOf obo1:GO_0006811 ; -. -obo1:GO_0015893 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015893" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "drug transport" ; - rdfs:subClassOf obo1:GO_0006810 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050896 ; - ] ; -. -obo1:GO_0015920 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of lipopolysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide." ; - oboInOwl:hasExactSynonym "LPS transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015920" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "lipopolysaccharide transport" ; - rdfs:subClassOf obo1:GO_0006869 ; -. -obo1:GO_0015931 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "nucleobase, nucleoside, nucleotide and nucleic acid transport" ; - oboInOwl:id "GO:0015931" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "nucleobase-containing compound transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0015935 - a owl:Class ; - obo1:IAO_0000115 "The smaller of the two subunits of a ribosome." ; - oboInOwl:hasExactSynonym "ribosomal small subunit" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0015935" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "small ribosomal subunit" ; - rdfs:subClassOf obo1:GO_1990904 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005840 ; - ] ; -. -obo1:GO_0015948 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes." ; - oboInOwl:hasDbXref "UM-BBD_pathwayID:meth" ; - oboInOwl:hasDbXref "Wikipedia:Methanogenesis" ; - oboInOwl:hasExactSynonym "methane biosynthesis" ; - oboInOwl:hasExactSynonym "methane biosynthetic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015948" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "methanogenesis" ; - rdfs:subClassOf obo1:GO_0043446 ; - rdfs:subClassOf obo1:GO_0045333 ; -. -obo1:GO_0015949 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule." ; - oboInOwl:hasDbXref "MetaCyc:P1-PWY" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015949" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleobase-containing small molecule interconversion" ; - rdfs:subClassOf obo1:GO_0006139 ; -. -obo1:GO_0015976 - a owl:Class ; - obo1:IAO_0000115 "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism." ; - oboInOwl:hasAlternativeId "GO:0015978" ; - oboInOwl:hasDbXref "Wikipedia:Heterotroph" ; - oboInOwl:hasExactSynonym "carbon utilization by utilization of organic compounds" ; - oboInOwl:hasExactSynonym "heterotrophy" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015976" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "carbon utilization" ; - rdfs:subClassOf obo1:GO_0008150 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0006810 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0008152 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0051606 ; - ] ; -. -obo1:GO_0015979 - a owl:Class ; - obo1:IAO_0000115 "The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds." ; - obo1:RO_0002161 obo1:NCBITaxon_33208 ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasDbXref "Wikipedia:Photosynthesis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0015979" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "photosynthesis" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0016010 - a owl:Class ; - obo1:IAO_0000115 "A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase." ; - oboInOwl:hasExactSynonym "DGC" ; - oboInOwl:hasExactSynonym "dystrophin glycoprotein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016010" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "dystrophin-associated glycoprotein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0016020 - a owl:Class ; - obo1:IAO_0000115 "A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it." ; - oboInOwl:creation_date "2014-03-06T11:37:54Z" ; - oboInOwl:hasAlternativeId "GO:0098589" ; - oboInOwl:hasAlternativeId "GO:0098805" ; - oboInOwl:hasDbXref "Wikipedia:Biological_membrane" ; - oboInOwl:hasNarrowSynonym "membrane region" ; - oboInOwl:hasNarrowSynonym "region of membrane" ; - oboInOwl:hasNarrowSynonym "whole membrane" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016020" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "membrane" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0016028 - a owl:Class ; - obo1:IAO_0000115 "The specialized microvilli-containing organelle on the apical surfaces of a photoreceptor cell containing the visual pigment rhodopsin and most of the proteins involved in phototransduction." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016028" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "rhabdomere" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0016032 - a owl:Class ; - obo1:IAO_0000115 "A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle." ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - oboInOwl:hasAlternativeId "GO:0022415" ; - oboInOwl:hasDbXref "Wikipedia:Viral_life_cycle" ; - oboInOwl:hasExactSynonym "virus process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "viral infection" ; - oboInOwl:hasRelatedSynonym "virulence" ; - oboInOwl:id "GO:0016032" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "See also the biological process terms 'viral infectious cycle ; GO:0019058' and 'lysogeny ; GO:0030069'." ; - rdfs:label "viral process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0016043 - a owl:Class ; - obo1:IAO_0000115 "A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." ; - oboInOwl:hasAlternativeId "GO:0044235" ; - oboInOwl:hasAlternativeId "GO:0071842" ; - oboInOwl:hasExactSynonym "cell organisation" ; - oboInOwl:hasExactSynonym "cellular component organisation at cellular level" ; - oboInOwl:hasExactSynonym "cellular component organisation in other organism" ; - oboInOwl:hasExactSynonym "cellular component organization at cellular level" ; - oboInOwl:hasExactSynonym "cellular component organization in other organism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell organization and biogenesis" ; - oboInOwl:id "GO:0016043" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cellular component organization" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0016049 - a owl:Class ; - obo1:IAO_0000115 "The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present." ; - oboInOwl:hasAlternativeId "GO:0048591" ; - oboInOwl:hasExactSynonym "cellular growth" ; - oboInOwl:hasExactSynonym "growth of cell" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell expansion" ; - oboInOwl:hasRelatedSynonym "metabolic process resulting in cell growth" ; - oboInOwl:hasRelatedSynonym "metabolism resulting in cell growth" ; - oboInOwl:hasRelatedSynonym "non-developmental cell growth" ; - oboInOwl:hasRelatedSynonym "non-developmental growth of a unicellular organism" ; - oboInOwl:id "GO:0016049" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "cell growth" ; - rdfs:subClassOf obo1:GO_0040007 ; -. -obo1:GO_0016050 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle." ; - oboInOwl:hasExactSynonym "vesicle organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "vesicle organization and biogenesis" ; - oboInOwl:id "GO:0016050" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "vesicle organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0016070 - a owl:Class ; - obo1:IAO_0000115 "The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage." ; - oboInOwl:hasExactSynonym "RNA metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0016070" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "RNA metabolic process" ; - rdfs:subClassOf obo1:GO_0006139 ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0016192 - a owl:Class ; - obo1:IAO_0000115 "A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane." ; - oboInOwl:hasAlternativeId "GO:0006899" ; - oboInOwl:hasExactSynonym "vesicle transport" ; - oboInOwl:hasExactSynonym "vesicular transport" ; - oboInOwl:hasNarrowSynonym "nonselective vesicle transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "protein sorting along secretory pathway" ; - oboInOwl:hasRelatedSynonym "vesicle trafficking" ; - oboInOwl:id "GO:0016192" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "vesicle-mediated transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0016209 - a owl:Class ; - obo1:IAO_0000115 "Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016209" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "antioxidant activity" ; - rdfs:subClassOf obo1:GO_0003674 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050896 ; - ] ; -. -obo1:GO_0016458 - a owl:Class ; - obo1:IAO_0000115 "Any process carried out at the cellular level that results in either long-term transcriptional repression via action on chromatin structure or RNA mediated, post-transcriptional repression of gene expression." ; - oboInOwl:hasDbXref "Wikipedia:Gene_silencing" ; - oboInOwl:hasNarrowSynonym "long-term maintenance of gene inactivation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0016458" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "This is a rather broad grouping term. While it was originally defined for long-term, heritable, epigenetic effects, short term effects on expression mediated by RNA are also frequently referred to as gene silencing, and are grouped under this class." ; - rdfs:label "gene silencing" ; - rdfs:subClassOf obo1:GO_0050789 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002212 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; -. -obo1:GO_0016469 - a owl:Class ; - obo1:IAO_0000115 "A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible." ; - oboInOwl:hasExactSynonym "hydrogen-transporting two-sector ATPase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "vacuolar hydrogen-transporting ATPase" ; - oboInOwl:id "GO:0016469" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "proton-transporting two-sector ATPase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0016472 - a owl:Class ; - obo1:IAO_0000115 "A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of sodium ions across a membrane. The complex comprises a membrane sector (F0 or V0) that carries out ion transport and a cytoplasmic compartment sector (F1 or V1) that catalyzes ATP synthesis or hydrolysis." ; - oboInOwl:hasExactSynonym "sodium-transporting two-sector ATPase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016472" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "sodium ion-transporting two-sector ATPase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0016491 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced." ; - oboInOwl:hasDbXref "EC:1.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-1614362" ; - oboInOwl:hasDbXref "Reactome:R-HSA-209921" ; - oboInOwl:hasDbXref "Reactome:R-HSA-209960" ; - oboInOwl:hasDbXref "Reactome:R-HSA-3095889" ; - oboInOwl:hasDbXref "Reactome:R-HSA-390425" ; - oboInOwl:hasDbXref "Reactome:R-HSA-390438" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5662660" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8878581" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8936442" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9020249" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9020260" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9024624" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9024630" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9025007" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9026001" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9026917" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9027033" ; - oboInOwl:hasDbXref "Reactome:R-HSA-9693722" ; - oboInOwl:hasExactSynonym "redox activity" ; - oboInOwl:hasNarrowSynonym "oxidoreductase activity, acting on other substrates" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016491" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "oxidoreductase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016530 - a owl:Class ; - obo1:IAO_0000115 "Binding to and delivering metal ions to a target protein." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016530" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "metallochaperone activity" ; - rdfs:subClassOf obo1:GO_0003674 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0043167 ; - ] ; -. -obo1:GO_0016591 - a owl:Class ; - obo1:IAO_0000115 "A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters." ; - oboInOwl:hasExactSynonym "DNA-directed RNA polymerase II, holoenzyme" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016591" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "RNA polymerase II, holoenzyme" ; - rdfs:subClassOf obo1:GO_0030880 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0016597 - a owl:Class ; - obo1:IAO_0000115 "Binding to an amino acid, organic acids containing one or more amino substituents." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016597" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amino acid binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0016610 - a owl:Class ; - obo1:IAO_0000115 "An enzyme complex composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase is tetrameric with an alpha2-beta2 structure and nitrogenase reductase is a homodimer, and both are associated with metal ions, which differ between species. Both proteins are required for the enzyme activity of the complex, the formation of oxidized ferredoxin and ammonia from reduced ferredoxin and nitrogen." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016610" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nitrogenase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0016740 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." ; - oboInOwl:hasDbXref "EC:2.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-1483089" ; - oboInOwl:hasDbXref "Reactome:R-HSA-1483186" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5668414" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8868783" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016740" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "transferase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016787 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3." ; - oboInOwl:hasDbXref "EC:3.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-1236938" ; - oboInOwl:hasDbXref "Reactome:R-HSA-2029475" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5694583" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5695964" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6786190" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6788295" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8938314" ; - oboInOwl:hasDbXref "Reactome:R-HSA-8952137" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016787" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "hydrolase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016829 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring." ; - oboInOwl:hasDbXref "EC:4.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5696408" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6782895" ; - oboInOwl:hasNarrowSynonym "other lyase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016829" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "lyase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016853 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5." ; - oboInOwl:hasDbXref "EC:5.-.-.-" ; - oboInOwl:hasDbXref "Reactome:R-HSA-6787623" ; - oboInOwl:hasNarrowSynonym "other isomerase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016853" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "isomerase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016874 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/19380"^^xsd:anyURI ; - oboInOwl:hasDbXref "EC:6.-.-.-" ; - oboInOwl:hasExactSynonym "synthetase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0016874" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "ligase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; -. -obo1:GO_0016942 - a owl:Class ; - obo1:IAO_0000115 "A complex of proteins which includes the insulin-like growth factor (IGF) and a number of IGF-binding proteins. The complex plays a role in growth and development." ; - oboInOwl:hasExactSynonym "IGF binding protein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0016942" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "insulin-like growth factor binding protein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005576 ; - ] ; -. -obo1:GO_0017053 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that possesses activity that prevents or downregulates transcription." ; - oboInOwl:created_by "tb" ; - oboInOwl:creation_date "2014-05-09T13:23:51Z" ; - oboInOwl:hasAlternativeId "GO:0090568" ; - oboInOwl:hasAlternativeId "GO:0090569" ; - oboInOwl:hasExactSynonym "transcription factor inhibitor complex" ; - oboInOwl:hasExactSynonym "transcriptional repressor complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "cytoplasmic transcriptional repressor complex" ; - oboInOwl:hasRelatedSynonym "nuclear transcriptional repressor complex" ; - oboInOwl:id "GO:0017053" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transcription repressor complex" ; - rdfs:subClassOf obo1:GO_0005667 ; -. -obo1:GO_0017144 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice." ; - oboInOwl:hasDbXref "Wikipedia:Drug_metabolism" ; - oboInOwl:hasExactSynonym "drug metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0017144" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "drug metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0018904 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving organic ethers, any anhydride of the general formula R1-O-R2, formed between two identical or nonidentical organic hydroxy compounds." ; - oboInOwl:hasExactSynonym "ether metabolism" ; - oboInOwl:hasExactSynonym "organic ether metabolic process" ; - oboInOwl:hasExactSynonym "organic ether metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0018904" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ether metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0018942 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving organometals, any metal-containing organic compound, especially one in which the metal atom is linked directly to one of more carbon atoms." ; - oboInOwl:hasExactSynonym "organometal metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0018942" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organometal metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0019213 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule." ; - oboInOwl:hasDbXref "Reactome:R-HSA-5689000" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0019213" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "deacetylase activity" ; - rdfs:subClassOf obo1:GO_0016787 ; -. -obo1:GO_0019239 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the removal of an amino group from a substrate, producing a substituted or nonsubstituted ammonia (NH3/NH2R)." ; - oboInOwl:hasDbXref "Reactome:R-HSA-9014641" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0019239" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "deaminase activity" ; - rdfs:subClassOf obo1:GO_0016787 ; -. -obo1:GO_0019538 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a protein. Includes protein modification." ; - oboInOwl:hasAlternativeId "GO:0006411" ; - oboInOwl:hasAlternativeId "GO:0044268" ; - oboInOwl:hasDbXref "Wikipedia:Protein_metabolism" ; - oboInOwl:hasExactSynonym "protein metabolic process and modification" ; - oboInOwl:hasExactSynonym "protein metabolism and modification" ; - oboInOwl:hasExactSynonym "protein metabolism" ; - oboInOwl:hasNarrowSynonym "multicellular organismal protein metabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0019538" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "protein metabolic process" ; - rdfs:subClassOf obo1:GO_0006807 ; - rdfs:subClassOf obo1:GO_0043170 ; - rdfs:subClassOf obo1:GO_0044238 ; -. -obo1:GO_0019748 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients." ; - oboInOwl:hasDbXref "Wikipedia:Secondary_metabolism" ; - oboInOwl:hasExactSynonym "secondary metabolism" ; - oboInOwl:hasExactSynonym "secondary metabolite metabolic process" ; - oboInOwl:hasExactSynonym "secondary metabolite metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0019748" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "secondary metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0019787 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." ; - oboInOwl:hasAlternativeId "GO:0008639" ; - oboInOwl:hasAlternativeId "GO:0008640" ; - oboInOwl:hasDbXref "Reactome:R-HSA-5678490" ; - oboInOwl:hasDbXref "Reactome:R-HSA-688137" ; - oboInOwl:hasExactSynonym "small conjugating protein transferase activity" ; - oboInOwl:hasNarrowSynonym "small conjugating protein ligase activity" ; - oboInOwl:hasNarrowSynonym "small protein conjugating enzyme activity" ; - oboInOwl:hasNarrowSynonym "ubiquitin-like conjugating enzyme activity" ; - oboInOwl:hasNarrowSynonym "ubiquitin-like-protein ligase activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "E2" ; - oboInOwl:hasRelatedSynonym "E3" ; - oboInOwl:id "GO:0019787" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ubiquitin-like protein transferase activity" ; - rdfs:subClassOf obo1:GO_0016740 ; -. -obo1:GO_0019814 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." ; - oboInOwl:hasNarrowSynonym "antibody" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0019814" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that an immunoglobulin complex has the function of antigen binding if a suitable antigen is available." ; - rdfs:label "immunoglobulin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0019825 - a owl:Class ; - obo1:IAO_0000115 "Binding to oxygen (O2)." ; - oboInOwl:hasNarrowSynonym "cytochrome P450" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "cytochrome P450 activity" ; - oboInOwl:id "GO:0019825" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "oxygen binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0019840 - a owl:Class ; - obo1:IAO_0000115 "Binding to an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0019840" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "isoprenoid binding" ; - rdfs:subClassOf obo1:GO_0008289 ; -. -obo1:GO_0019842 - a owl:Class ; - obo1:IAO_0000115 "Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0019842" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "vitamin binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0020015 - a owl:Class ; - obo1:IAO_0000115 "A membrane-bounded organelle found in organisms from the order Kinetoplastida that houses the enzymes of glycolysis." ; - oboInOwl:hasDbXref "Wikipedia:Glycosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0020015" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycosome" ; - rdfs:subClassOf obo1:GO_0042579 ; -. -obo1:GO_0020022 - a owl:Class ; - obo1:IAO_0000115 "An electron-dense acidic membrane-bounded organelle which contains a matrix of pyrophosphate and polyphosphates with bound calcium and other cations." ; - oboInOwl:hasExactSynonym "metachromatic granule" ; - oboInOwl:hasExactSynonym "volutin granule" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "polyphosphate vacuole" ; - oboInOwl:id "GO:0020022" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "acidocalcisome" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0022406 - a owl:Class ; - obo1:IAO_0000115 "The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere." ; - oboInOwl:hasExactSynonym "membrane docking" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0022406" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "membrane docking" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0022411 - a owl:Class ; - obo1:IAO_0000115 "A cellular process that results in the breakdown of a cellular component." ; - oboInOwl:hasAlternativeId "GO:0071845" ; - oboInOwl:hasExactSynonym "cell structure disassembly" ; - oboInOwl:hasExactSynonym "cellular component disassembly at cellular level" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0022411" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular component disassembly" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0022607 - a owl:Class ; - obo1:IAO_0000115 "The aggregation, arrangement and bonding together of a cellular component." ; - oboInOwl:hasAlternativeId "GO:0071844" ; - oboInOwl:hasExactSynonym "cell structure assembly" ; - oboInOwl:hasExactSynonym "cellular component assembly at cellular level" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0022607" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular component assembly" ; - rdfs:subClassOf obo1:GO_0016043 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0044085 ; - ] ; -. -obo1:GO_0022610 - a owl:Class ; - obo1:IAO_0000115 "The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0022610" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "biological adhesion" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0022900 - a owl:Class ; - obo1:IAO_0000115 "A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21455"^^xsd:anyURI ; - oboInOwl:hasDbXref "Wikipedia:Electron_transport_chain" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0022900" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "electron transport chain" ; - rdfs:subClassOf obo1:GO_0006091 ; -. -obo1:GO_0030076 - a owl:Class ; - obo1:IAO_0000115 "A protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center." ; - oboInOwl:hasDbXref "Wikipedia:Light-harvesting_complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "antenna complex" ; - oboInOwl:id "GO:0030076" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "light-harvesting complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0030112 - a owl:Class ; - obo1:IAO_0000115 "A carbohydrate rich layer at the outermost periphery of a cell." ; - oboInOwl:hasDbXref "Wikipedia:Glycocalyx" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030112" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycocalyx" ; - rdfs:subClassOf obo1:GO_0030312 ; -. -obo1:GO_0030115 - a owl:Class ; - obo1:IAO_0000115 "A crystalline protein layer surrounding some bacteria." ; - oboInOwl:hasDbXref "Wikipedia:S-layer" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030115" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "S-layer" ; - rdfs:subClassOf obo1:GO_0030312 ; -. -obo1:GO_0030119 - a owl:Class ; - obo1:IAO_0000115 "Any of several heterotetrameric complexes that link clathrin (or another coat-forming molecule, as hypothesized for AP-3 and AP-4) to a membrane surface; they are found on coated pits and coated vesicles, and mediate sorting of cargo proteins into vesicles. Each AP complex contains two large (a beta and one of either an alpha, gamma, delta, or epsilon) subunits (110-130 kDa), a medium (mu) subunit (approximately 50 kDa), and a small (sigma) subunit (15-20 kDa)." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "clathrin adaptor" ; - oboInOwl:id "GO:0030119" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "AP-type membrane coat adaptor complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0032991 ; - ] ; -. -obo1:GO_0030175 - a owl:Class ; - obo1:IAO_0000115 "Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft." ; - oboInOwl:hasAlternativeId "GO:0030028" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1046371754" ; - oboInOwl:hasDbXref "Wikipedia:Filopodia" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030175" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "A filopodium may be approximately 0.1 um wide, 5-10 um long, and up to 50 um long in axon growth cones; contain a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward. Note that filopodia on dendritic shafts are distinct from other types of filopodia (even those found in dendritic growth cones) and may react differently to stimuli, as shown in PMID:12904473." ; - rdfs:label "filopodium" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0030234 - a owl:Class ; - obo1:IAO_0000115 "Binds to and modulates the activity of an enzyme." ; - oboInOwl:hasAlternativeId "GO:0010576" ; - oboInOwl:hasExactSynonym "catalytic regulator activity" ; - oboInOwl:hasExactSynonym "enzyme modulator" ; - oboInOwl:hasNarrowSynonym "metalloenzyme regulator activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0030234" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:comment "This term should only be used in cases when the regulator directly interacts with the enzyme." ; - rdfs:label "enzyme regulator activity" ; - rdfs:subClassOf obo1:GO_0003674 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0065009 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0005515 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0003824 ; - ] ; -. -obo1:GO_0030246 - a owl:Class ; - obo1:IAO_0000115 "Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." ; - oboInOwl:hasAlternativeId "GO:0005529" ; - oboInOwl:hasExactSynonym "sugar binding" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "selectin" ; - oboInOwl:id "GO:0030246" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "carbohydrate binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0030312 - a owl:Class ; - obo1:IAO_0000115 "A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030312" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "The outer membrane (of gram negative bacteria) or cell wall (of yeast or Gram positive bacteria) are defined as parts of this structure, see 'external encapsulating structure part'." ; - rdfs:label "external encapsulating structure" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0030313 - a owl:Class ; - obo1:IAO_0000115 "An envelope that surrounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present." ; - oboInOwl:hasDbXref "Wikipedia:Cell_envelope" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030313" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell envelope" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0030427 - a owl:Class ; - obo1:IAO_0000115 "Any part of a cell where non-isotropic growth takes place." ; - oboInOwl:hasAlternativeId "GO:0000134" ; - oboInOwl:hasAlternativeId "GO:0030483" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030427" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "site of polarized growth" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0030428 - a owl:Class ; - obo1:IAO_0000115 "A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells." ; - oboInOwl:hasBroadSynonym "septum" ; - oboInOwl:hasExactSynonym "cross wall" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030428" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell septum" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0030431 - a owl:Class ; - obo1:IAO_0000115 "Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain." ; - oboInOwl:hasDbXref "Wikipedia:Sleep" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "diapause" ; - oboInOwl:hasRelatedSynonym "dormancy" ; - oboInOwl:hasRelatedSynonym "lethargus" ; - oboInOwl:id "GO:0030431" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "sleep" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0030496 - a owl:Class ; - obo1:IAO_0000115 "A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis." ; - oboInOwl:hasDbXref "Wikipedia:Midbody_(cell_biology)" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030496" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "midbody" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0030532 - a owl:Class ; - obo1:IAO_0000115 "A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs." ; - oboInOwl:hasDbXref "Wikipedia:SnRNP" ; - oboInOwl:hasExactSynonym "small nuclear ribonucleoprotein" ; - oboInOwl:hasExactSynonym "snRNP" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030532" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "small nuclear ribonucleoprotein complex" ; - rdfs:subClassOf obo1:GO_1990904 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0030677 - a owl:Class ; - obo1:IAO_0000115 "A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs." ; - oboInOwl:hasExactSynonym "RNase P complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030677" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that chloroplasts possess a complex that is called 'RNase P' because it catalyzes pre-tRNA cleavage, but the chloroplast complex appears not to contain RNA." ; - rdfs:label "ribonuclease P complex" ; - rdfs:subClassOf obo1:GO_1990904 ; -. -obo1:GO_0030684 - a owl:Class ; - obo1:IAO_0000115 "Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030684" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "preribosome" ; - rdfs:subClassOf obo1:GO_1990904 ; -. -obo1:GO_0030689 - a owl:Class ; - obo1:IAO_0000115 "Any of several heterodimers containing one or two Noc proteins, associated with preribosomal complexes; involved in ribosome biogenesis." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030689" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Noc complexes exhibit a dynamic intranuclear location; consider also annotating to 'nucleolus ; GO:0005730' and/or 'nucleoplasm ; GO:0005654'. Note that the definition uses Saccharomyces gene product names because this complex has only been described in Saccharomyces cerevisiae and no other names have yet arisen; the term nevertheless can be used for analogous complexes in other eukaryotes, and the definition can be changed if better wording is found." ; - rdfs:label "Noc complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0030880 - a owl:Class ; - obo1:IAO_0000115 "Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits." ; - oboInOwl:hasExactSynonym "multisubunit RNA polymerase" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030880" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "RNA polymerase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0030894 - a owl:Class ; - obo1:IAO_0000115 "A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins." ; - oboInOwl:hasDbXref "Wikipedia:Replisome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "DNA synthesome complex" ; - oboInOwl:hasRelatedSynonym "RC complex" ; - oboInOwl:hasRelatedSynonym "replication-competent complex" ; - oboInOwl:id "GO:0030894" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "replisome" ; - rdfs:subClassOf obo1:GO_0032993 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0033202 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0042575 ; - ] ; -. -obo1:GO_0030904 - a owl:Class ; - obo1:IAO_0000115 "A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030904" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "retromer complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0030929 - a owl:Class ; - obo1:IAO_0000115 "Complex that possesses ADPG pyrophosphorylase activity. In all organisms where it has been found, the complex is a tetramer. In bacteria, it is a homotetramer. In plants, the complex is a heterotetramer composed small and large subunits." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030929" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ADPG pyrophosphorylase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0030964 - a owl:Class ; - obo1:IAO_0000115 "An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. It catalyzes the transfer of a pair of electrons from NADH to a quinone." ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - oboInOwl:hasAlternativeId "GO:0030025" ; - oboInOwl:hasAlternativeId "GO:0030966" ; - oboInOwl:hasAlternativeId "GO:0031675" ; - oboInOwl:hasAlternativeId "GO:0031677" ; - oboInOwl:hasAlternativeId "GO:0031678" ; - oboInOwl:hasAlternativeId "GO:0045280" ; - oboInOwl:hasDbXref "Wikipedia:NADH_dehydrogenase" ; - oboInOwl:hasExactSynonym "Complex I" ; - oboInOwl:hasNarrowSynonym "NADH dehydrogenase complex (plastoquinone)" ; - oboInOwl:hasNarrowSynonym "NADH dehydrogenase complex (quinone)" ; - oboInOwl:hasNarrowSynonym "NADH dehydrogenase complex (ubiquinone)" ; - oboInOwl:hasNarrowSynonym "NADH:plastoquinone reductase complex" ; - oboInOwl:hasNarrowSynonym "plastid NADH dehydrogenase complex (plastoquinone)" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0030964" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The function possessed by this complex is represented by the molecular function term 'NADH dehydrogenase (quinone) activity ; GO:0050136'." ; - rdfs:label "NADH dehydrogenase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0030990 - a owl:Class ; - obo1:IAO_0000115 "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules." ; - oboInOwl:hasExactSynonym "intraflagellar transport complex" ; - oboInOwl:hasExactSynonym "intraflagellar transport particle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "IFT complex" ; - oboInOwl:id "GO:0030990" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that we deem cilia and microtubule-based flagella to be equivalent." ; - rdfs:label "intraciliary transport particle" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031012 - a owl:Class ; - obo1:IAO_0000115 "A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues." ; - oboInOwl:hasAlternativeId "GO:0005578" ; - oboInOwl:hasDbXref "NIF_Subcellular:nlx_subcell_20090513" ; - oboInOwl:hasDbXref "Wikipedia:Extracellular_matrix" ; - oboInOwl:hasExactSynonym "proteinaceous extracellular matrix" ; - oboInOwl:hasNarrowSynonym "matrisome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031012" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "extracellular matrix" ; - rdfs:subClassOf obo1:GO_0030312 ; -. -obo1:GO_0031023 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow." ; - oboInOwl:hasExactSynonym "microtubule organising center organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "microtubule organizing center organization and biogenesis" ; - oboInOwl:id "GO:0031023" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "microtubule organizing center organization" ; - rdfs:subClassOf obo1:GO_0016043 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0006996 ; - ] ; -. -obo1:GO_0031026 - a owl:Class ; - obo1:IAO_0000115 "A complex that possesses glutamate synthase activity." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031026" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glutamate synthase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031049 - a owl:Class ; - obo1:IAO_0000115 "The DNA metabolic process in which micronuclear-limited sequences, internal eliminated sequences (IES) and breakage eliminated sequences (BES) are removed from the developing macronucleus (anlage) of a ciliate." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0031049" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "programmed DNA elimination" ; - rdfs:subClassOf obo1:GO_0006259 ; -. -obo1:GO_0031074 - a owl:Class ; - obo1:IAO_0000115 "Any complex that acts to move proteins or RNAs into or out of the nucleus through nuclear pores." ; - oboInOwl:hasNarrowSynonym "nucleocytoplasmic shuttling complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031074" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nucleocytoplasmic transport complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031082 - a owl:Class ; - obo1:IAO_0000115 "Any of several protein complexes required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes, platelet dense granules, and other related organelles; acronym for biogenesis of lysosomal-related organelles complex." ; - oboInOwl:hasExactSynonym "BLOC-1 related complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031082" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "BLOC complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0031094 - a owl:Class ; - obo1:IAO_0000115 "A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031094" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "platelet dense tubular network" ; - rdfs:subClassOf obo1:GO_0043231 ; -. -obo1:GO_0031105 - a owl:Class ; - obo1:IAO_0000115 "A protein complex containing septins. Typically, these complexes contain multiple septins and are oligomeric." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031105" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "septin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005856 ; - ] ; -. -obo1:GO_0031143 - a owl:Class ; - obo1:IAO_0000115 "A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21139"^^xsd:anyURI ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/21141"^^xsd:anyURI ; - oboInOwl:hasDbXref "Wikipedia:Pseudopod" ; - oboInOwl:hasExactSynonym "pseudopod" ; - oboInOwl:hasExactSynonym "pseudopodial protrusion" ; - oboInOwl:hasNarrowSynonym "axopodium" ; - oboInOwl:hasNarrowSynonym "lobopodium" ; - oboInOwl:hasNarrowSynonym "reticulopodium" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031143" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pseudopodium" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0031205 - a owl:Class ; - obo1:IAO_0000115 "An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031205" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endoplasmic reticulum Sec complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0071256 ; - ] ; -. -obo1:GO_0031248 - a owl:Class ; - obo1:IAO_0000115 "A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031248" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "protein acetyltransferase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031252 - a owl:Class ; - obo1:IAO_0000115 "The area of a motile cell closest to the direction of movement." ; - oboInOwl:hasExactSynonym "front of cell" ; - oboInOwl:hasExactSynonym "leading edge of cell" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031252" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell leading edge" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0031254 - a owl:Class ; - obo1:IAO_0000115 "The area of a motile cell opposite to the direction of movement." ; - oboInOwl:hasExactSynonym "back of cell" ; - oboInOwl:hasExactSynonym "trailing edge" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031254" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell trailing edge" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0031264 - a owl:Class ; - obo1:IAO_0000115 "A protein complex formed by the association of signaling proteins with a death receptor upon ligand binding. The complex includes procaspases and death domain-containing proteins in addition to the ligand-bound receptor, and may control the activation of caspases 8 and 10." ; - oboInOwl:hasDbXref "Wikipedia:Death-inducing_signaling_complex" ; - oboInOwl:hasExactSynonym "DISC protein complex" ; - oboInOwl:hasExactSynonym "DISC" ; - oboInOwl:hasExactSynonym "death receptor-induced signaling complex" ; - oboInOwl:hasExactSynonym "death receptor-induced signalling complex" ; - oboInOwl:hasExactSynonym "death-inducing signalling complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031264" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Gene products that may be annotated to this term include: 1) ligand-bound receptors such as FAS/CD95 (though care should be taken because FAS can also act as a non-apoptotic signal transducer); 2) signaling molecules such as FADD (FAS-associated protein with a death domain), cIAPs (cellular inhibitor of apoptosis proteins), c-FLIPs and caspases 8 and 10." ; - rdfs:label "death-inducing signaling complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0031332 - a owl:Class ; - obo1:IAO_0000115 "Any protein complex that mediates the effects of small interfering RNAs on gene expression. Most known examples contain one or more members of the Argonaute family of proteins." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031332" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "RNAi effector complex" ; - rdfs:subClassOf obo1:GO_1990904 ; -. -obo1:GO_0031371 - a owl:Class ; - obo1:IAO_0000115 "Any complex that possesses ubiquitin conjugating enzyme activity." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "E2 complex" ; - oboInOwl:id "GO:0031371" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ubiquitin conjugating enzyme complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031386 - a owl:Class ; - obo1:IAO_0000115 "A molecular function exhibited by a protein that is covalently attached (AKA tagged or conjugated) to another protein where it acts as a marker, recognized by the cellular apparatus to target the tagged protein for some cellular process such as modification, sequestration, transport or degradation." ; - oboInOwl:hasExactSynonym "ubiquitin-like protein modifier" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "covalent modifier" ; - oboInOwl:hasRelatedSynonym "protein tagging activity" ; - oboInOwl:hasRelatedSynonym "ubiquitin" ; - oboInOwl:id "GO:0031386" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Use this term to annotate conjugated tags, not for conjugating enzymes. At the time of writing, all known gene products with this activity are ubiquitin-like, either based on overall sequence similarity or the presence of common motifs and structures." ; - rdfs:label "protein tag" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0031406 - a owl:Class ; - obo1:IAO_0000115 "Binding to a carboxylic acid, an organic acid containing one or more carboxyl (COOH) groups or anions (COO-)." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0031406" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "carboxylic acid binding" ; - rdfs:subClassOf obo1:GO_0043167 ; -. -obo1:GO_0031409 - a owl:Class ; - obo1:IAO_0000115 "Binding to a pigment, a general or particular coloring matter in living organisms, e.g. melanin." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0031409" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pigment binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0031469 - a owl:Class ; - obo1:IAO_0000115 "An organelle found in bacteria consisting of a proteinaceous coat containing metabolic enzymes whose purpose is the sequestration or concentration of metabolites and which has the appearance of a polygonal granule by electron microscopy." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/16852"^^xsd:anyURI ; - oboInOwl:hasBroadSynonym "BAC" ; - oboInOwl:hasExactSynonym "bacterial microcompartment" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031469" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "polyhedral organelle" ; - rdfs:subClassOf obo1:GO_0043232 ; -. -obo1:GO_0031501 - a owl:Class ; - obo1:IAO_0000115 "A complex that posseses mannosyltransferase activity." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031501" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mannosyltransferase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0031519 - a owl:Class ; - obo1:IAO_0000115 "A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure." ; - oboInOwl:hasExactSynonym "Polycomb Group protein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0031519" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "PcG protein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0031640 - a owl:Class ; - obo1:IAO_0000115 "Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." ; - oboInOwl:hasAlternativeId "GO:0001908" ; - oboInOwl:hasExactSynonym "killing of cells of another organism" ; - oboInOwl:hasNarrowSynonym "killing of cells of another, non-host, organism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0031640" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "killing of cells of other organism" ; - rdfs:subClassOf obo1:GO_0001906 ; - rdfs:subClassOf obo1:GO_0044419 ; -. -obo1:GO_0031647 - a owl:Class ; - obo1:IAO_0000115 "Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0031647" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "regulation of protein stability" ; - rdfs:subClassOf obo1:GO_0065008 ; -. -obo1:GO_0031982 - a owl:Class ; - obo1:IAO_0000115 "Any small, fluid-filled, spherical organelle enclosed by membrane." ; - oboInOwl:hasAlternativeId "GO:0031988" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao221389602" ; - oboInOwl:hasDbXref "Wikipedia:Vesicle_(biology)" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "membrane-bounded vesicle" ; - oboInOwl:hasRelatedSynonym "membrane-enclosed vesicle" ; - oboInOwl:id "GO:0031982" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "vesicle" ; - rdfs:subClassOf obo1:GO_0043226 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0031992 - a owl:Class ; - obo1:IAO_0000115 "The biological transducer activity that accepts energy and converts it to another form, often by transfer to another molecule within the cell." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "light harvesting activity" ; - oboInOwl:hasRelatedSynonym "photon capture" ; - oboInOwl:id "GO:0031992" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "energy transducer activity" ; - rdfs:subClassOf obo1:GO_0060089 ; -. -obo1:GO_0032059 - a owl:Class ; - obo1:IAO_0000115 "A cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Blebs are formed during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses." ; - oboInOwl:hasDbXref "Wikipedia:Bleb_(cell_biology)" ; - oboInOwl:hasExactSynonym "plasma membrane bleb" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032059" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "bleb" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0032153 - a owl:Class ; - obo1:IAO_0000115 "The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles." ; - oboInOwl:hasExactSynonym "cell division plane" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032153" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term refers to the future site of division in a cell that has not yet divided." ; - rdfs:label "cell division site" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0032179 - a owl:Class ; - obo1:IAO_0000115 "The slender tubular outgrowth first produced by most spores in germination." ; - oboInOwl:hasDbXref "Wikipedia:Germ_tube" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032179" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "germ tube" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0032196 - a owl:Class ; - obo1:IAO_0000115 "Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites." ; - oboInOwl:hasDbXref "Wikipedia:Transposon" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0032196" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "transposition" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0032300 - a owl:Class ; - obo1:IAO_0000115 "Any complex formed of proteins that act in mismatch repair." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032300" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mismatch repair complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0032392 - a owl:Class ; - obo1:IAO_0000115 "The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0032392" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that DNA geometric change and DNA topological change (GO:0006265) are distinct, but are usually coupled in vivo." ; - rdfs:label "DNA geometric change" ; - rdfs:subClassOf obo1:GO_0051276 ; -. -obo1:GO_0032421 - a owl:Class ; - obo1:IAO_0000115 "A bundle of cross-linked stereocilia, arranged around a kinocilium on the apical surface of a sensory hair cell (e.g. a neuromast, auditory or vestibular hair cell). Stereocilium bundles act as mechanosensory organelles by responding to fluid motion or fluid pressure changes." ; - oboInOwl:hasExactSynonym "stereocilia bundle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032421" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "stereocilium bundle" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0043005 ; - ] ; -. -obo1:GO_0032451 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of the removal of a methyl group from a substrate." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0032451" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "demethylase activity" ; - rdfs:subClassOf obo1:GO_0003824 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0008152 ; - ] ; -. -obo1:GO_0032476 - a owl:Class ; - obo1:IAO_0000115 "A complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032476" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "decaprenyl diphosphate synthase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0032501 - a owl:Class ; - obo1:IAO_0000115 "Any biological process, occurring at the level of a multicellular organism, pertinent to its function." ; - obo1:RO_0002161 obo1:NCBITaxon_4896 ; - obo1:RO_0002161 obo1:NCBITaxon_4932 ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-09-19T16:07:47Z" ; - oboInOwl:hasAlternativeId "GO:0044707" ; - oboInOwl:hasAlternativeId "GO:0050874" ; - oboInOwl:hasExactSynonym "organismal physiological process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-multicellular organism process" ; - oboInOwl:id "GO:0032501" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "multicellular organismal process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0032502 - a owl:Class ; - obo1:IAO_0000115 "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2012-12-19T12:21:31Z" ; - oboInOwl:hasAlternativeId "GO:0044767" ; - oboInOwl:hasNarrowSynonym "development" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-organism developmental process" ; - oboInOwl:id "GO:0032502" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "developmental process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0032989 - a owl:Class ; - obo1:IAO_0000115 "The process in which cellular structures, including whole cells or cell parts, are generated and organized." ; - oboInOwl:hasExactSynonym "cellular structure morphogenesis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0032989" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular component morphogenesis" ; - rdfs:subClassOf obo1:GO_0016043 ; - rdfs:subClassOf obo1:GO_0032502 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0032502 ; - ] ; -. -obo1:GO_0032991 - a owl:Class ; - obo1:IAO_0000115 "A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." ; - oboInOwl:hasAlternativeId "GO:0043234" ; - oboInOwl:hasExactSynonym "macromolecular complex" ; - oboInOwl:hasExactSynonym "macromolecule complex" ; - oboInOwl:hasExactSynonym "protein containing complex" ; - oboInOwl:hasNarrowSynonym "protein complex" ; - oboInOwl:hasNarrowSynonym "protein-protein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032991" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "A protein complex in this context is meant as a stable set of interacting proteins which can be co-purified by an acceptable method, and where the complex has been shown to exist as an isolated, functional unit in vivo. Acceptable experimental methods include stringent protein purification followed by detection of protein interaction. The following methods should be considered non-acceptable: simple immunoprecipitation, pull-down experiments from cell extracts without further purification, colocalization and 2-hybrid screening. Interactions that should not be captured as protein complexes include: 1) enzyme/substrate, receptor/ligand or any similar transient interactions, unless these are a critical part of the complex assembly or are required e.g. for the receptor to be functional; 2) proteins associated in a pull-down/co-immunoprecipitation assay with no functional link or any evidence that this is a defined biological entity rather than a loose-affinity complex; 3) any complex where the only evidence is based on genetic interaction data; 4) partial complexes, where some subunits (e.g. transmembrane ones) cannot be expressed as recombinant proteins and are excluded from experiments (in this case, independent evidence is necessary to find out the composition of the full complex, if known). Interactions that may be captured as protein complexes include: 1) enzyme/substrate or receptor/ligand if the complex can only assemble and become functional in the presence of both classes of subunits; 2) complexes where one of the members has not been shown to be physically linked to the other(s), but is a homologue of, and has the same functionality as, a protein that has been experimentally demonstrated to form a complex with the other member(s); 3) complexes whose existence is accepted based on localization and pharmacological studies, but for which experimental evidence is not yet available for the complex as a whole." ; - rdfs:label "protein-containing complex" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0032993 - a owl:Class ; - obo1:IAO_0000115 "A macromolecular complex containing both protein and DNA molecules." ; - oboInOwl:hasExactSynonym "DNA-protein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032993" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here." ; - rdfs:label "protein-DNA complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0032997 - a owl:Class ; - obo1:IAO_0000115 "A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin." ; - oboInOwl:hasBroadSynonym "immunoglobulin receptor complex" ; - oboInOwl:hasExactSynonym "Fc-receptor complex" ; - oboInOwl:hasExactSynonym "FcR complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0032997" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "Fc receptor complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0033061 - a owl:Class ; - obo1:IAO_0000115 "A protein complex containing accessory proteins which bind a recombinase (e.g. Rad51) and bind single-stranded DNA (ssDNA), and promote nucleation of the recombinase onto ssDNA through facilitating recombinase-RPA exchange." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0033061" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Many paralogs of Rad51 act as recombinase mediators. These paralogs dimerize (or occasionally form tetramers) amongst themselves to form complexes with ssDNA-binding activity, and which act as mediators of Rad51 presynaptic filament assembly." ; - rdfs:label "DNA recombinase mediator complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0033099 - a owl:Class ; - obo1:IAO_0000115 "A membrane-bounded extension of the cell, originally characterized in Mycoplasma species, that contains an electron-dense core that is part of the cytoskeleton and is oriented lengthwise and ends distally in a bulbous knob (terminal button). Required for adherence to host cells and involved in gliding motility and cell division." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0033099" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "attachment organelle" ; - rdfs:subClassOf obo1:GO_0043231 ; -. -obo1:GO_0033202 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that possesses DNA helicase activity." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0033202" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA helicase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0033218 - a owl:Class ; - obo1:IAO_0000115 "Binding to an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0033218" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amide binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0033256 - a owl:Class ; - obo1:IAO_0000115 "A protein complex containing an inhibitory-kappaB (I-kappaB/IKB) protein and one or more copies of an NF-kappaB protein. In the resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0033256" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "I-kappaB/NF-kappaB complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0035097 - a owl:Class ; - obo1:IAO_0000115 "A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0035097" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "histone methyltransferase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; -. -obo1:GO_0035230 - a owl:Class ; - obo1:IAO_0000115 "A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um." ; - oboInOwl:hasDbXref "Wikipedia:Membrane_nanotube" ; - oboInOwl:hasExactSynonym "membrane nanotube" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0035230" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cytoneme" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0035273 - a owl:Class ; - obo1:IAO_0000115 "Binding to a phthalate, any ester or salt of phthalic acid." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0035273" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "phthalate binding" ; - rdfs:subClassOf obo1:GO_0031406 ; -. -obo1:GO_0038023 - a owl:Class ; - obo1:IAO_0000115 "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." ; - oboInOwl:created_by "bf" ; - oboInOwl:creation_date "2011-08-01T02:45:27Z" ; - oboInOwl:hasAlternativeId "GO:0004872" ; - oboInOwl:hasAlternativeId "GO:0019041" ; - oboInOwl:hasBroadSynonym "receptor activity" ; - oboInOwl:hasExactSynonym "receptor activity involved in signal transduction" ; - oboInOwl:hasExactSynonym "signalling receptor activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0038023" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "signaling receptor activity" ; - rdfs:subClassOf obo1:GO_0060089 ; -. -obo1:GO_0040007 - a owl:Class ; - obo1:IAO_0000115 "The increase in size or mass of an entire organism, a part of an organism or a cell." ; - oboInOwl:hasAlternativeId "GO:0048590" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "growth pattern" ; - oboInOwl:hasRelatedSynonym "non-developmental growth" ; - oboInOwl:id "GO:0040007" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:comment "See also the biological process term 'cell growth ; GO:0016049'." ; - rdfs:label "growth" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0040011 - a owl:Class ; - obo1:IAO_0000115 "Self-propelled movement of a cell or organism from one location to another." ; - obo1:RO_0002161 obo1:NCBITaxon_451864 ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0040011" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "locomotion" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0042044 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042044" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "fluid transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0042056 - a owl:Class ; - obo1:IAO_0000115 "Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal." ; - oboInOwl:hasBroadSynonym "attractant" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0042056" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "chemoattractant activity" ; - rdfs:subClassOf obo1:GO_0005515 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0007154 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0040011 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050789 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050896 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0005515 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0038023 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002213 ; - owl:someValuesFrom obo1:GO_0038023 ; - ] ; -. -obo1:GO_0042133 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell." ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasExactSynonym "neurotransmitter metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042133" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "neurotransmitter metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; - rdfs:subClassOf obo1:GO_0065008 ; -. -obo1:GO_0042165 - a owl:Class ; - obo1:IAO_0000115 "Binding to a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0042165" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "neurotransmitter binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0042180 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups." ; - oboInOwl:hasExactSynonym "ketone metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042180" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular ketone metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0042254 - a owl:Class ; - obo1:IAO_0000115 "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis." ; - oboInOwl:hasAlternativeId "GO:0007046" ; - oboInOwl:hasExactSynonym "ribosome biogenesis and assembly" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042254" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "ribosome biogenesis" ; - rdfs:subClassOf obo1:GO_0044085 ; -. -obo1:GO_0042277 - a owl:Class ; - obo1:IAO_0000115 "Binding to a peptide, an organic compound comprising two or more amino acids linked by peptide bonds." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0042277" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "peptide binding" ; - rdfs:subClassOf obo1:GO_0033218 ; -. -obo1:GO_0042303 - a owl:Class ; - obo1:IAO_0000115 "The periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin, etc." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042303" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "molting cycle" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0042440 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin." ; - oboInOwl:hasExactSynonym "pigment metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042440" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pigment metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0042445 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone." ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasExactSynonym "hormone metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042445" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "hormone metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; - rdfs:subClassOf obo1:GO_0065008 ; -. -obo1:GO_0042562 - a owl:Class ; - obo1:IAO_0000115 "Binding to an hormone, a naturally occurring substance secreted by specialized cells that affect the metabolism or behavior of cells possessing functional receptors for the hormone. Hormones may be produced by the same, or different, cell as express the receptor." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0042562" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "hormone binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0042566 - a owl:Class ; - obo1:IAO_0000115 "A spherical, membrane-bounded organelle found in some anaerobic protozoa, which participates in ATP and molecular hydrogen formation." ; - oboInOwl:hasDbXref "Wikipedia:Hydrogenosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042566" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "hydrogenosome" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0042575 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that possesses DNA polymerase activity and is involved in template directed synthesis of DNA." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042575" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "DNA polymerase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0042579 - a owl:Class ; - obo1:IAO_0000115 "Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2)." ; - oboInOwl:hasDbXref "Wikipedia:Microbody" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042579" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "microbody" ; - rdfs:subClassOf obo1:GO_0043231 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0042597 - a owl:Class ; - obo1:IAO_0000115 "The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria)." ; - oboInOwl:hasAlternativeId "GO:0005620" ; - oboInOwl:hasExactSynonym "periplasm" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042597" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "periplasmic space" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0042600 - a owl:Class ; - obo1:IAO_0000115 "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042600" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term does not refer to the extraembryonic membrane surrounding the embryo of amniote vertebrates as this is an anatomical structure and is therefore not covered by GO." ; - rdfs:label "egg chorion" ; - rdfs:subClassOf obo1:GO_0030312 ; -. -obo1:GO_0042611 - a owl:Class ; - obo1:IAO_0000115 "A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042611" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "MHC protein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0042620 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria." ; - oboInOwl:hasBroadSynonym "PHA metabolic process" ; - oboInOwl:hasBroadSynonym "PHA metabolism" ; - oboInOwl:hasExactSynonym "poly(3-hydroxyalkanoate) metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042620" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "poly(3-hydroxyalkanoate) metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0042710 - a owl:Class ; - obo1:IAO_0000115 "A process in which planktonically growing microorganisms grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/17727"^^xsd:anyURI ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042710" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:gocheck_do_not_manually_annotate ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "biofilm formation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0042810 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process." ; - oboInOwl:hasExactSynonym "pheromone metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042810" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pheromone metabolic process" ; - rdfs:subClassOf obo1:GO_0019748 ; - rdfs:subClassOf obo1:GO_0042445 ; -. -obo1:GO_0042824 - a owl:Class ; - obo1:IAO_0000115 "A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules." ; - oboInOwl:hasExactSynonym "peptide-loading complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "PLC" ; - oboInOwl:id "GO:0042824" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that although this complex is located in the endoplasmic reticulum, there is some evidence that it may also be found in the Golgi." ; - rdfs:label "MHC class I peptide loading complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005783 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0042886 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042886" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amide transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0042908 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of a xenobiotic, a compound foreign to living organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0042908" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "xenobiotic transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0042995 - a owl:Class ; - obo1:IAO_0000115 "A prolongation or process extending from a cell, e.g. a flagellum or axon." ; - oboInOwl:hasBroadSynonym "cell process" ; - oboInOwl:hasBroadSynonym "cellular process" ; - oboInOwl:hasExactSynonym "cellular projection" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0042995" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell projection" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0043005 - a owl:Class ; - obo1:IAO_0000115 "A prolongation or process extending from a nerve cell, e.g. an axon or dendrite." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao867568886" ; - oboInOwl:hasExactSynonym "neuron process" ; - oboInOwl:hasExactSynonym "neuron protrusion" ; - oboInOwl:hasExactSynonym "neuronal cell projection" ; - oboInOwl:hasNarrowSynonym "neurite" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "nerve fiber" ; - oboInOwl:id "GO:0043005" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "neuron projection" ; - rdfs:subClassOf obo1:GO_0042995 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0043021 - a owl:Class ; - obo1:IAO_0000115 "Binding to a complex of RNA and protein." ; - oboInOwl:hasExactSynonym "RNP binding" ; - oboInOwl:hasExactSynonym "protein-RNA complex binding" ; - oboInOwl:hasExactSynonym "ribonucleoprotein binding" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0043021" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ribonucleoprotein complex binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0043025 - a owl:Class ; - obo1:IAO_0000115 "The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1044911821" ; - oboInOwl:hasDbXref "Wikipedia:Soma_(biology)" ; - oboInOwl:hasExactSynonym "neuron cell body" ; - oboInOwl:hasExactSynonym "neuronal cell soma" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043025" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections." ; - rdfs:label "neuronal cell body" ; - rdfs:subClassOf obo1:GO_0005575 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0043033 - a owl:Class ; - obo1:IAO_0000115 "A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram-negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages." ; - oboInOwl:hasBroadSynonym "debranching enzyme complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043033" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "isoamylase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0043062 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite." ; - oboInOwl:hasExactSynonym "extracellular structure organisation" ; - oboInOwl:hasExactSynonym "extracellular structure organization and biogenesis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043062" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "extracellular structure organization" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0043094 - a owl:Class ; - obo1:IAO_0000115 "Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043094" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular metabolic compound salvage" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0043101 - a owl:Class ; - obo1:IAO_0000115 "Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "purine salvage" ; - oboInOwl:id "GO:0043101" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "purine-containing compound salvage" ; - rdfs:subClassOf obo1:GO_0006139 ; - rdfs:subClassOf obo1:GO_0043094 ; -. -obo1:GO_0043163 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell envelope, everything external to, but not including, the cytoplasmic membrane of bacteria, encompassing the periplasmic space, cell wall, and outer membrane if present." ; - oboInOwl:hasExactSynonym "cell envelope organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell envelope organization and biogenesis" ; - oboInOwl:id "GO:0043163" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell envelope organization" ; - rdfs:subClassOf obo1:GO_0045229 ; -. -obo1:GO_0043167 - a owl:Class ; - obo1:IAO_0000115 "Binding to an ion, a charged atoms or groups of atoms." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "atom binding" ; - oboInOwl:id "GO:0043167" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "ion binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0043170 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; - oboInOwl:hasAlternativeId "GO:0043283" ; - oboInOwl:hasAlternativeId "GO:0044259" ; - oboInOwl:hasExactSynonym "biopolymer metabolic process" ; - oboInOwl:hasExactSynonym "macromolecule metabolism" ; - oboInOwl:hasExactSynonym "organismal macromolecule metabolism" ; - oboInOwl:hasNarrowSynonym "multicellular organismal macromolecule metabolic process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043170" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "macromolecule metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0043176 - a owl:Class ; - obo1:IAO_0000115 "Binding to an amine, a weakly basic organic compound that contains an amino or a substituted amino group." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0043176" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "amine binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0043178 - a owl:Class ; - obo1:IAO_0000115 "Binding to an alcohol, any of a class of alkyl compounds containing a hydroxyl group." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0043178" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "alcohol binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0043190 - a owl:Class ; - obo1:IAO_0000115 "A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter." ; - oboInOwl:hasAlternativeId "GO:0043191" ; - oboInOwl:hasAlternativeId "GO:0043192" ; - oboInOwl:hasNarrowSynonym "ABC-type efflux permease complex" ; - oboInOwl:hasNarrowSynonym "ABC-type efflux porter complex" ; - oboInOwl:hasNarrowSynonym "ABC-type uptake permease complex" ; - oboInOwl:hasNarrowSynonym "mating pheromone exporter" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043190" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ATP-binding cassette (ABC) transporter complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0043226 - a owl:Class ; - obo1:IAO_0000115 "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1539965131" ; - oboInOwl:hasDbXref "Wikipedia:Organelle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043226" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organelle" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0043229 - a owl:Class ; - obo1:IAO_0000115 "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043229" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "intracellular organelle" ; - rdfs:subClassOf obo1:GO_0043226 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0043230 - a owl:Class ; - obo1:IAO_0000115 "Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043230" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "extracellular organelle" ; - rdfs:subClassOf obo1:GO_0043226 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005576 ; - ] ; - owl:equivalentClass [ - a owl:Class ; - owl:intersectionOf ( - obo1:GO_0043226 - [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005576 ; - ] - ) ; - ] ; -. -obo1:GO_0043231 - a owl:Class ; - obo1:IAO_0000115 "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." ; - oboInOwl:hasExactSynonym "intracellular membrane-enclosed organelle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043231" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "intracellular membrane-bounded organelle" ; - rdfs:subClassOf obo1:GO_0043229 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0043232 - a owl:Class ; - obo1:IAO_0000115 "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." ; - oboInOwl:hasExactSynonym "intracellular non-membrane-enclosed organelle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043232" ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "intracellular non-membrane-bounded organelle" ; - rdfs:subClassOf obo1:GO_0043229 ; -. -obo1:GO_0043235 - a owl:Class ; - obo1:IAO_0000115 "Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043235" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "receptor complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0043256 - a owl:Class ; - obo1:IAO_0000115 "A large, extracellular glycoprotein complex composed of three different polypeptide chains, alpha, beta and gamma. Provides an integral part of the structural scaffolding of basement membranes." ; - obo1:RO_0002161 obo1:NCBITaxon_4751 ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043256" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "laminin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0031012 ; - ] ; -. -obo1:GO_0043364 - a owl:Class ; - obo1:IAO_0000115 "Catalyzes the activation of an enzyme by generating an organic free radical on a glycine residue via a homolytic cleavage of S-adenosyl-L-methionine (SAM)." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/14190"^^xsd:anyURI ; - oboInOwl:hasBroadSynonym "catalysis of free radical formation" ; - oboInOwl:hasDbXref "EC:1.97.1.-" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0043364" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "glycyl-radical enzyme activating activity" ; - rdfs:subClassOf obo1:GO_0016491 ; -. -obo1:GO_0043412 - a owl:Class ; - obo1:IAO_0000115 "The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043412" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "macromolecule modification" ; - rdfs:subClassOf obo1:GO_0043170 ; -. -obo1:GO_0043446 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "alkane metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043446" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular alkane metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0043449 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "alkene metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043449" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular alkene metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0043452 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "alkyne metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043452" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular alkyne metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0043473 - a owl:Class ; - obo1:IAO_0000115 "The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043473" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pigmentation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0043500 - a owl:Class ; - obo1:IAO_0000115 "A process in which muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "muscle plasticity" ; - oboInOwl:id "GO:0043500" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "muscle adaptation" ; - rdfs:subClassOf obo1:GO_0032501 ; - rdfs:subClassOf obo1:GO_0050896 ; -. -obo1:GO_0043511 - a owl:Class ; - obo1:IAO_0000115 "Heterodimeric hormone composed of an inhibin alpha subunit complexed with either an inhibin beta-A subunit, to form inhibin A, or an inhibin beta-B subunit, to form inhibin B." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043511" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that the actions of the inhibin complex are the opposite of those of the activin complex, which is a dimer of an inhibin beta-A and/or inhibin beta-B subunit. See also the cellular component term 'activin complex ; GO:0048180'." ; - rdfs:label "inhibin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005576 ; - ] ; -. -obo1:GO_0043527 - a owl:Class ; - obo1:IAO_0000115 "A multimeric protein complex involved in the methylation of specific nucleotides in tRNA." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043527" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "tRNA methyltransferase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005575 ; - ] ; -. -obo1:GO_0043591 - a owl:Class ; - obo1:IAO_0000115 "The structures that lie outside the inner membrane and surround the entire endospore; consists of a peptidoglycan-containing inner layer (the endospore cortex) surrounded by a multilayered proteinaceous coat. An exosporium may be present as an extreme outer layer." ; - oboInOwl:hasAlternativeId "GO:0055030" ; - oboInOwl:hasBroadSynonym "spore wall" ; - oboInOwl:hasExactSynonym "endospore wall" ; - oboInOwl:hasExactSynonym "peptidoglycan-based spore wall" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0043591" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endospore external encapsulating structure" ; - rdfs:subClassOf obo1:GO_0005618 ; -. -obo1:GO_0043603 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "amide metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0043603" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular amide metabolic process" ; - rdfs:subClassOf obo1:GO_0006807 ; -. -obo1:GO_0044085 - a owl:Class ; - obo1:IAO_0000115 "A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." ; - oboInOwl:hasAlternativeId "GO:0071843" ; - oboInOwl:hasExactSynonym "cellular component biogenesis at cellular level" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0044085" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular component biogenesis" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0044238 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." ; - oboInOwl:hasExactSynonym "primary metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0044238" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "primary metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0044255 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving lipids, as carried out by individual cells." ; - oboInOwl:hasExactSynonym "cellular lipid metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0044255" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular lipid metabolic process" ; - rdfs:subClassOf obo1:GO_0006629 ; -. -obo1:GO_0044419 - a owl:Class ; - obo1:IAO_0000115 "Any process evolved to enable an interaction with an organism of a different species." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/20191"^^xsd:anyURI ; - obo1:RO_0002161 obo1:NCBITaxon_4895 ; - oboInOwl:hasExactSynonym "interaction with another species" ; - oboInOwl:hasExactSynonym "interspecies interaction between organisms" ; - oboInOwl:hasExactSynonym "interspecies interaction with other organisms" ; - oboInOwl:hasExactSynonym "interspecies interaction" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0044419" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "biological process involved in interspecies interaction between organisms" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0044423 - a owl:Class ; - obo1:IAO_0000115 "Any constituent part of a virion, a complete fully infectious extracellular virus particle." ; - obo1:RO_0002161 obo1:NCBITaxon_131567 ; - oboInOwl:hasAlternativeId "GO:0019012" ; - oboInOwl:hasDbXref "Wikipedia:Virus" ; - oboInOwl:hasExactSynonym "virion part" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "complete virus particle" ; - oboInOwl:hasRelatedSynonym "virion" ; - oboInOwl:id "GO:0044423" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." ; - rdfs:label "virion component" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0044464 - a owl:Class ; - obo1:IAO_0000115 "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." ; - oboInOwl:consider "CL:0000000" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao628508602" ; - oboInOwl:hasExactSynonym "cellular subcomponent" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "protoplast" ; - oboInOwl:id "GO:0044464" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." ; - rdfs:label "obsolete cell part" ; - owl:deprecated true ; -. -obo1:GO_0045177 - a owl:Class ; - obo1:IAO_0000115 "The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue." ; - oboInOwl:hasExactSynonym "apical region of cell" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045177" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "apical part of cell" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0045178 - a owl:Class ; - obo1:IAO_0000115 "The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045178" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "basal part of cell" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0045182 - a owl:Class ; - obo1:IAO_0000115 "Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." ; - oboInOwl:hasExactSynonym "translation factor activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0045182" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "translation regulator activity" ; - rdfs:subClassOf obo1:GO_0003674 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050789 ; - ] ; -. -obo1:GO_0045202 - a owl:Class ; - obo1:IAO_0000115 "The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane." ; - oboInOwl:hasDbXref "NIF_Subcellular:sao914572699" ; - oboInOwl:hasDbXref "Wikipedia:Chemical_synapse" ; - oboInOwl:hasExactSynonym "synaptic junction" ; - oboInOwl:hasNarrowSynonym "mixed synapse" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "electrotonic synapse" ; - oboInOwl:id "GO:0045202" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_synapse ; - rdfs:label "synapse" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0045229 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell." ; - oboInOwl:hasExactSynonym "external encapsulating structure organisation" ; - oboInOwl:hasExactSynonym "external encapsulating structure organization and biogenesis" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0045229" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "external encapsulating structure organization" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0045230 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the capsule, a protective structure surrounding some species of bacteria and fungi." ; - oboInOwl:hasExactSynonym "capsule organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "capsule organization and biogenesis" ; - oboInOwl:id "GO:0045230" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "capsule organization" ; - rdfs:subClassOf obo1:GO_0045229 ; -. -obo1:GO_0045231 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a slime layer. A slime layer is an easily removed, diffuse, unorganized layer of extracellular material that surrounds a cell." ; - oboInOwl:hasExactSynonym "slime layer organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "slime layer organization and biogenesis" ; - oboInOwl:id "GO:0045231" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "slime layer organization" ; - rdfs:subClassOf obo1:GO_0045229 ; -. -obo1:GO_0045239 - a owl:Class ; - obo1:IAO_0000115 "Any of the heteromeric enzymes that act in the TCA cycle." ; - oboInOwl:hasExactSynonym "TCA cycle enzyme complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045239" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "tricarboxylic acid cycle enzyme complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0045251 - a owl:Class ; - obo1:IAO_0000115 "A protein complex facilitating the electron transfer from an acyl-CoA molecule to ubiquinone via its flavin adenine dinucleotide (FAD) cofactor. Usually contains an alpha and a beta subunit and the structural cofactor adenosine monophosphate (AMP). Part of a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors in the electron transport system." ; - oboInOwl:hasExactSynonym "ETF complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045251" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "electron transfer flavoprotein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0045252 - a owl:Class ; - obo1:IAO_0000115 "A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2)." ; - oboInOwl:hasExactSynonym "dihydrolipoamide S-succinyltransferase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045252" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "See also the molecular functions term 'oxoglutarate dehydrogenase (succinyl-transferring) activity ; GO:0004591', 'dihydrolipoyllysine-residue succinyltransferase activity ; GO:0004149' and 'dihydrolipoyl dehydrogenase activity ; GO:0004148'." ; - rdfs:label "oxoglutarate dehydrogenase complex" ; - rdfs:subClassOf obo1:GO_0045239 ; -. -obo1:GO_0045253 - a owl:Class ; - obo1:IAO_0000115 "A complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045253" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "See also the cellular component term 'cytosolic pyruvate dehydrogenase complex ; GO:0045250'." ; - rdfs:label "pyruvate dehydrogenase (lipoamide) phosphatase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0045254 - a owl:Class ; - obo1:IAO_0000115 "Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3)." ; - oboInOwl:hasAlternativeId "GO:0009364" ; - oboInOwl:hasBroadSynonym "dihydrolipoyl dehydrogenase complex" ; - oboInOwl:hasDbXref "Wikipedia:Pyruvate_dehydrogenase_complex" ; - oboInOwl:hasExactSynonym "pyruvate dehydrogenase complex (lipoamide)" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045254" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term represents a location and not a function; the activity possessed by this complex is mentioned in the definition for the purpose of describing and distinguishing the complex. The functions of this complex are represented by the molecular function terms 'pyruvate dehydrogenase (lipoamide) activity ; GO:0004739', 'dihydrolipoamide S-acetyltransferase activity ; GO:0004742', and 'dihydrolipoamide dehydrogenase activity ; GO:0004148'." ; - rdfs:label "pyruvate dehydrogenase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0045273 - a owl:Class ; - obo1:IAO_0000115 "A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "electron transport complex II" ; - oboInOwl:id "GO:0045273" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "respiratory chain complex II" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0045275 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species." ; - oboInOwl:hasAlternativeId "GO:0032842" ; - oboInOwl:hasAlternativeId "GO:0045285" ; - oboInOwl:hasDbXref "Wikipedia:Coenzyme_Q_-_cytochrome_c_reductase" ; - oboInOwl:hasExactSynonym "complex III" ; - oboInOwl:hasExactSynonym "cytochrome bc(1) complex" ; - oboInOwl:hasExactSynonym "cytochrome bc1 complex" ; - oboInOwl:hasExactSynonym "ubiquinol-cytochrome c oxidoreductase complex" ; - oboInOwl:hasExactSynonym "ubiquinol-cytochrome-c reductase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "CoQH2-cytochrome c reductase complex" ; - oboInOwl:hasRelatedSynonym "coenzyme Q-cytochrome c oxidoreductase complex" ; - oboInOwl:hasRelatedSynonym "coenzyme Q-cytochrome c reductase complex" ; - oboInOwl:hasRelatedSynonym "electron transport complex III" ; - oboInOwl:id "GO:0045275" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "respiratory chain complex III" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0045277 - a owl:Class ; - obo1:IAO_0000115 "A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2)." ; - oboInOwl:hasAlternativeId "GO:0045287" ; - oboInOwl:hasExactSynonym "cytochrome c oxidase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:hasRelatedSynonym "electron transport complex IV" ; - oboInOwl:id "GO:0045277" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "respiratory chain complex IV" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0045293 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that posttranscriptionally catalyzes insertion, deletion or substitution of nucleotides at multiple sites within nascent mRNA transcripts to produce mature mRNAs in eukaryotes." ; - oboInOwl:hasExactSynonym "editosome" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0045293" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "mRNA editing complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0045333 - a owl:Class ; - obo1:IAO_0000115 "The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration)." ; - oboInOwl:hasBroadSynonym "respiration" ; - oboInOwl:hasDbXref "Wikipedia:Cellular_respiration" ; - oboInOwl:hasExactSynonym "oxidative metabolic process" ; - oboInOwl:hasExactSynonym "oxidative metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0045333" ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "cellular respiration" ; - rdfs:subClassOf obo1:GO_0006091 ; -. -obo1:GO_0045478 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fusome, a large intracellular spectrin-rich structure found in insect germline cells and mammalian hematopoietic cells." ; - oboInOwl:hasExactSynonym "fusome organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "fusome organization and biogenesis" ; - oboInOwl:id "GO:0045478" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "fusome organization" ; - rdfs:subClassOf obo1:GO_0006996 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0000003 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0032501 ; - ] ; -. -obo1:GO_0045499 - a owl:Class ; - obo1:IAO_0000115 "Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal." ; - oboInOwl:hasExactSynonym "chemorepellant activity" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0045499" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "chemorepellent activity" ; - rdfs:subClassOf obo1:GO_0005515 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0007154 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0040011 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050789 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0050896 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0005515 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0038023 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002213 ; - owl:someValuesFrom obo1:GO_0038023 ; - ] ; -. -obo1:GO_0045735 - a owl:Class ; - obo1:IAO_0000115 "Functions in the storage of nutritious substrates." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "storage protein of fat body" ; - oboInOwl:hasRelatedSynonym "storage protein" ; - oboInOwl:hasRelatedSynonym "yolk protein" ; - oboInOwl:id "GO:0045735" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term can be used in place of the obsolete terms 'storage protein ; GO:0005187' and 'storage protein of fat body (sensu Insecta) ; GO:0008041'." ; - rdfs:label "nutrient reservoir activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0046483 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings)." ; - oboInOwl:hasExactSynonym "heterocycle metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046483" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "heterocycle metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0046490 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids." ; - oboInOwl:hasExactSynonym "IPP metabolic process" ; - oboInOwl:hasExactSynonym "IPP metabolism" ; - oboInOwl:hasExactSynonym "isopentenyl diphosphate metabolism" ; - oboInOwl:hasExactSynonym "isopentenyl pyrophosphate metabolic process" ; - oboInOwl:hasExactSynonym "isopentenyl pyrophosphate metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046490" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "isopentenyl diphosphate metabolic process" ; - rdfs:subClassOf obo1:GO_0006793 ; - rdfs:subClassOf obo1:GO_0044255 ; -. -obo1:GO_0046536 - a owl:Class ; - obo1:IAO_0000115 "A protein or protein-RNA complex that localizes to one or more of the sex chromosome(s), where it acts to normalize transcription between different sexes." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0046536" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "dosage compensation complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005634 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005694 ; - ] ; -. -obo1:GO_0046794 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of a virus, or part of a virus, into, out of, or within a host cell." ; - oboInOwl:hasExactSynonym "viral transport" ; - oboInOwl:hasNarrowSynonym "virion transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046794" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "transport of virus" ; - rdfs:subClassOf obo1:GO_0006810 ; - rdfs:subClassOf obo1:GO_0016032 ; - rdfs:subClassOf obo1:GO_0051704 ; -. -obo1:GO_0046812 - a owl:Class ; - obo1:IAO_0000115 "Binding to the surface of a host cell." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0046812" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "host cell surface binding" ; - rdfs:subClassOf obo1:GO_0005488 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0051704 ; - ] ; -. -obo1:GO_0046864 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046864" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "isoprenoid transport" ; - rdfs:subClassOf obo1:GO_0006869 ; -. -obo1:GO_0046903 - a owl:Class ; - obo1:IAO_0000115 "The controlled release of a substance by a cell or a tissue." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046903" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "secretion" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0046906 - a owl:Class ; - obo1:IAO_0000115 "Binding to a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position." ; - oboInOwl:hasNarrowSynonym "porphyrin binding" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0046906" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "tetrapyrrole binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0046950 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism." ; - oboInOwl:hasExactSynonym "cellular ketone body metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0046950" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular ketone body metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; -. -obo1:GO_0048180 - a owl:Class ; - obo1:IAO_0000115 "A nonsteroidal regulator, composed of two covalently linked inhibin beta subunits, inhibin beta-A and inhibin beta-B (sometimes known as activin beta or activin/inhibin beta). There are three forms of activin complex, activin A, which is composed of 2 inhibin beta-A subunits, activin B, which is composed of 2 inhibin beta-B subunits, and activin AB, which is composed of an inhibin beta-A and an inhibin beta-B subunit." ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0048180" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that the actions of the activin complex are the opposite of those of the inhibin complex, which is a dimer of an inhibin beta-A or inhibin beta-B subunit and a inhibin alpha subunit. See 'inhibin complex ; GO:0043511'." ; - rdfs:label "activin complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005576 ; - ] ; -. -obo1:GO_0048284 - a owl:Class ; - obo1:IAO_0000115 "The creation of a single organelle from two or more organelles." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0048284" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "organelle fusion" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0048285 - a owl:Class ; - obo1:IAO_0000115 "The creation of two or more organelles by division of one organelle." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0048285" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "organelle fission" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0048308 - a owl:Class ; - obo1:IAO_0000115 "The partitioning of organelles between daughter cells at cell division." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0048308" ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "organelle inheritance" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0048469 - a owl:Class ; - obo1:IAO_0000115 "A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "functional differentiation" ; - oboInOwl:id "GO:0048469" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell maturation" ; - rdfs:subClassOf obo1:GO_0032502 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0032502 ; - ] ; -. -obo1:GO_0048476 - a owl:Class ; - obo1:IAO_0000115 "An endodeoxyribonuclease complex that resolves the 4-way DNA intermediates of a Holliday junction into two separate duplex DNA molecules. Can be branch-migration associated." ; - oboInOwl:hasExactSynonym "resolvasome" ; - oboInOwl:hasNarrowSynonym "Mus81-Eme1 complex" ; - oboInOwl:hasNarrowSynonym "Mus81-Eme1 holliday resolvase complex" ; - oboInOwl:hasNarrowSynonym "Mus81-Eme2 complex" ; - oboInOwl:hasNarrowSynonym "Mus81-Eme2 holliday resolvase complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0048476" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "Holliday junction resolvase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:GO_0048492 - a owl:Class ; - obo1:IAO_0000115 "A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." ; - oboInOwl:hasExactSynonym "RubisCO complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0048492" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ribulose bisphosphate carboxylase complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0048500 - a owl:Class ; - obo1:IAO_0000115 "A complex of protein and RNA which facilitates translocation of proteins across membranes." ; - oboInOwl:hasDbXref "Wikipedia:Signal_recognition_particle" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0048500" ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "signal recognition particle" ; - rdfs:subClassOf obo1:GO_1990904 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005737 ; - ] ; -. -obo1:GO_0048511 - a owl:Class ; - obo1:IAO_0000115 "Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "rhythm" ; - oboInOwl:id "GO:0048511" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "rhythmic process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0048753 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pigment granule." ; - oboInOwl:hasExactSynonym "pigment granule organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "pigment granule organization and biogenesis" ; - oboInOwl:id "GO:0048753" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "pigment granule organization" ; - rdfs:subClassOf obo1:GO_0016050 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0043473 ; - ] ; -. -obo1:GO_0048771 - a owl:Class ; - obo1:IAO_0000115 "The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0048771" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "tissue remodeling" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0050761 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively." ; - oboInOwl:hasExactSynonym "depsipeptide metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050761" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "depsipeptide metabolic process" ; - rdfs:subClassOf obo1:GO_0006518 ; -. -obo1:GO_0050789 - a owl:Class ; - obo1:IAO_0000115 "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." ; - oboInOwl:hasAlternativeId "GO:0050791" ; - oboInOwl:hasExactSynonym "regulation of physiological process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050789" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_aspergillus ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "regulation of biological process" ; - rdfs:subClassOf obo1:GO_0065007 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0008150 ; - ] ; - owl:equivalentClass [ - a owl:Class ; - owl:intersectionOf ( - obo1:GO_0065007 - [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0008150 ; - ] - ) ; - ] ; -. -obo1:GO_0050817 - a owl:Class ; - obo1:IAO_0000115 "The process in which a fluid solution, or part of it, changes into a solid or semisolid mass." ; - oboInOwl:hasExactSynonym "clotting" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050817" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "coagulation" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0050840 - a owl:Class ; - obo1:IAO_0000115 "Binding to a component of the extracellular matrix." ; - oboInOwl:hasExactSynonym "extracellular matrix constituent binding" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "adhesive extracellular matrix constituent" ; - oboInOwl:id "GO:0050840" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "extracellular matrix binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0050877 - a owl:Class ; - obo1:IAO_0000115 "A organ system process carried out by any of the organs or tissues of neurological system." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/13824"^^xsd:anyURI ; - oboInOwl:hasExactSynonym "neurological system process" ; - oboInOwl:hasExactSynonym "neurophysiological process" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "pan-neural process" ; - oboInOwl:id "GO:0050877" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "nervous system process" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0050878 - a owl:Class ; - obo1:IAO_0000115 "Any process that modulates the levels of body fluids." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050878" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "regulation of body fluid levels" ; - rdfs:subClassOf obo1:GO_0065008 ; -. -obo1:GO_0050879 - a owl:Class ; - obo1:IAO_0000115 "Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050879" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "multicellular organismal movement" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0050886 - a owl:Class ; - obo1:IAO_0000115 "The process that involves the secretion of or response to endocrine hormones. An endocrine hormone is a hormone released into the circulatory system." ; - oboInOwl:hasExactSynonym "endocrine physiological process" ; - oboInOwl:hasExactSynonym "endocrine physiology" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050886" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "endocrine process" ; - rdfs:subClassOf obo1:GO_0032501 ; -. -obo1:GO_0050896 - a owl:Class ; - obo1:IAO_0000115 "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." ; - oboInOwl:hasAlternativeId "GO:0051869" ; - oboInOwl:hasExactSynonym "physiological response to stimulus" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0050896" ; - oboInOwl:inSubset go:gocheck_do_not_manually_annotate ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC." ; - rdfs:label "response to stimulus" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0051179 - a owl:Class ; - obo1:IAO_0000115 "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2013-12-18T13:51:04Z" ; - oboInOwl:hasAlternativeId "GO:1902578" ; - oboInOwl:hasExactSynonym "establishment and maintenance of localization" ; - oboInOwl:hasExactSynonym "establishment and maintenance of position" ; - oboInOwl:hasExactSynonym "localisation" ; - oboInOwl:hasNarrowSynonym "establishment and maintenance of cellular component location" ; - oboInOwl:hasNarrowSynonym "establishment and maintenance of substance location" ; - oboInOwl:hasNarrowSynonym "establishment and maintenance of substrate location" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single organism localization" ; - oboInOwl:hasRelatedSynonym "single-organism localization" ; - oboInOwl:id "GO:0051179" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "localization" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0051180 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body." ; - oboInOwl:hasBroadSynonym "vitamin or cofactor transport" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051180" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "vitamin transport" ; - rdfs:subClassOf obo1:GO_0006810 ; -. -obo1:GO_0051189 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein." ; - oboInOwl:hasBroadSynonym "coenzyme and prosthetic group metabolic process" ; - oboInOwl:hasBroadSynonym "coenzyme and prosthetic group metabolism" ; - oboInOwl:hasExactSynonym "prosthetic group metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051189" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "prosthetic group metabolic process" ; - rdfs:subClassOf obo1:GO_0008152 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0019538 ; - ] ; -. -obo1:GO_0051213 - a owl:Class ; - obo1:IAO_0000115 "Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products." ; - oboInOwl:hasDbXref "Reactome:R-HSA-112120" ; - oboInOwl:hasDbXref "Reactome:R-HSA-112121" ; - oboInOwl:hasDbXref "Reactome:R-HSA-112124" ; - oboInOwl:hasDbXref "Reactome:R-HSA-112125" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0051213" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "dioxygenase activity" ; - rdfs:subClassOf obo1:GO_0016491 ; -. -obo1:GO_0051234 - a owl:Class ; - obo1:IAO_0000115 "Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." ; - oboInOwl:hasExactSynonym "establishment of localisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051234" ; - oboInOwl:inSubset go:goslim_agr ; - oboInOwl:inSubset go:goslim_flybase_ribbon ; - oboInOwl:inSubset go:goslim_mouse ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "establishment of localization" ; - rdfs:subClassOf obo1:GO_0051179 ; -. -obo1:GO_0051258 - a owl:Class ; - obo1:IAO_0000115 "The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein." ; - oboInOwl:hasExactSynonym "protein polymer biosynthesis" ; - oboInOwl:hasExactSynonym "protein polymer biosynthetic process" ; - oboInOwl:hasExactSynonym "protein polymer formation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051258" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "protein polymerization" ; - rdfs:subClassOf obo1:GO_0065003 ; -. -obo1:GO_0051261 - a owl:Class ; - obo1:IAO_0000115 "The process in which protein polymers, compounds composed of a large number of component monomers, are broken down. Depolymerization occurs by the successive removal of monomers from an existing poly- or oligomeric protein." ; - oboInOwl:hasExactSynonym "protein polymer breakdown" ; - oboInOwl:hasExactSynonym "protein polymer catabolic process" ; - oboInOwl:hasExactSynonym "protein polymer catabolism" ; - oboInOwl:hasExactSynonym "protein polymer degradation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051261" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "protein depolymerization" ; - rdfs:subClassOf obo1:GO_0022411 ; -. -obo1:GO_0051276 - a owl:Class ; - obo1:IAO_0000115 "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome." ; - oboInOwl:hasAlternativeId "GO:0007001" ; - oboInOwl:hasAlternativeId "GO:0051277" ; - oboInOwl:hasExactSynonym "chromosome organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "chromosome organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "maintenance of genome integrity" ; - oboInOwl:hasRelatedSynonym "nuclear genome maintenance" ; - oboInOwl:id "GO:0051276" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "chromosome organization" ; - rdfs:subClassOf obo1:GO_0006996 ; -. -obo1:GO_0051301 - a owl:Class ; - obo1:IAO_0000115 "The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells." ; - oboInOwl:hasDbXref "Wikipedia:Cell_division" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051301" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division." ; - rdfs:label "cell division" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0051540 - a owl:Class ; - obo1:IAO_0000115 "Binding to a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0051540" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "metal cluster binding" ; - rdfs:subClassOf obo1:GO_0005488 ; -. -obo1:GO_0051604 - a owl:Class ; - obo1:IAO_0000115 "Any process leading to the attainment of the full functional capacity of a protein." ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051604" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - oboInOwl:inSubset go:goslim_yeast ; - rdfs:label "protein maturation" ; - rdfs:subClassOf obo1:GO_0019538 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0043170 ; - ] ; -. -obo1:GO_0051606 - a owl:Class ; - obo1:IAO_0000115 "The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal." ; - oboInOwl:hasExactSynonym "stimulus detection" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "perception of stimulus" ; - oboInOwl:hasRelatedSynonym "stimulus sensing" ; - oboInOwl:id "GO:0051606" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "detection of stimulus" ; - rdfs:subClassOf obo1:GO_0050896 ; -. -obo1:GO_0051640 - a owl:Class ; - obo1:IAO_0000115 "Any process in which an organelle is transported to, and/or maintained in, a specific location." ; - oboInOwl:hasExactSynonym "establishment and maintenance of organelle localization" ; - oboInOwl:hasExactSynonym "organelle localisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051640" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "organelle localization" ; - rdfs:subClassOf obo1:GO_0051641 ; -. -obo1:GO_0051641 - a owl:Class ; - obo1:IAO_0000115 "A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2013-12-18T14:04:32Z" ; - oboInOwl:hasAlternativeId "GO:1902580" ; - oboInOwl:hasExactSynonym "cellular localisation" ; - oboInOwl:hasExactSynonym "establishment and maintenance of cellular localization" ; - oboInOwl:hasExactSynonym "establishment and maintenance of localization in cell or cell membrane" ; - oboInOwl:hasExactSynonym "single organism cellular localization" ; - oboInOwl:hasNarrowSynonym "intracellular localization" ; - oboInOwl:hasNarrowSynonym "localization within cell" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "single-organism cellular localization" ; - oboInOwl:id "GO:0051641" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cellular localization" ; - rdfs:subClassOf obo1:GO_0051179 ; -. -obo1:GO_0051703 - a owl:Class ; - obo1:IAO_0000115 "Any process in which an organism has an effect on an organism of the same species." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/20191"^^xsd:anyURI ; - oboInOwl:hasExactSynonym "intraspecies interaction between organisms" ; - oboInOwl:hasExactSynonym "intraspecies interaction with other organisms" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051703" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "biological process involved in intraspecies interaction between organisms" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0051704 - a owl:Class ; - obo1:IAO_0000115 "A biological process which involves another organism of the same or different species." ; - oboInOwl:hasAlternativeId "GO:0051706" ; - oboInOwl:hasExactSynonym "interaction between organisms" ; - oboInOwl:hasExactSynonym "physiological interaction between organisms" ; - oboInOwl:hasExactSynonym "physiological interaction with other organism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051704" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "multi-organism process" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0051705 - a owl:Class ; - obo1:IAO_0000115 "OBSOLETE. Any process in which an organism has a behavioral effect on another organism of the same or different species." ; - obo1:IAO_0000233 "https://github.com/geneontology/go-ontology/issues/18810"^^xsd:anyURI ; - oboInOwl:hasExactSynonym "behavioral interaction between organisms" ; - oboInOwl:hasExactSynonym "behavioral interaction with other organism" ; - oboInOwl:hasExactSynonym "behavioural interaction between organisms" ; - oboInOwl:hasExactSynonym "behavioural interaction with other organism" ; - oboInOwl:hasNarrowSynonym "behavioral signaling" ; - oboInOwl:hasNarrowSynonym "behavioral signalling" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0051705" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:comment "This term was obsoleted because it was an unnecessary grouping term." ; - rdfs:label "obsolete multi-organism behavior" ; - owl:deprecated true ; -. -obo1:GO_0052314 - a owl:Class ; - obo1:IAO_0000115 "The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response." ; - oboInOwl:hasExactSynonym "phytoalexin metabolism" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0052314" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "phytoalexin metabolic process" ; - rdfs:subClassOf obo1:GO_0009404 ; -. -obo1:GO_0055044 - a owl:Class ; - obo1:IAO_0000115 "The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata." ; - oboInOwl:hasDbXref "Wikipedia:Symplast" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0055044" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "symplast" ; - rdfs:subClassOf obo1:GO_0005575 ; -. -obo1:GO_0060089 - a owl:Class ; - obo1:IAO_0000115 "A compound molecular function in which an effector function is controlled by one or more regulatory components." ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:id "GO:0060089" ; - oboInOwl:inSubset go:gocheck_do_not_manually_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "molecular transducer activity" ; - rdfs:subClassOf obo1:GO_0003674 ; -. -obo1:GO_0060090 - a owl:Class ; - obo1:IAO_0000115 "The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way." ; - oboInOwl:hasAlternativeId "GO:0032947" ; - oboInOwl:hasExactSynonym "binding, bridging" ; - oboInOwl:hasOBONamespace "molecular_function" ; - oboInOwl:hasRelatedSynonym "protein complex scaffold activity" ; - oboInOwl:hasRelatedSynonym "protein-containing complex scaffold activity" ; - oboInOwl:id "GO:0060090" ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "molecular adaptor activity" ; - rdfs:subClassOf obo1:GO_0003674 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000051 ; - owl:someValuesFrom obo1:GO_0005488 ; - ] ; -. -obo1:GO_0061024 - a owl:Class ; - obo1:IAO_0000115 "A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." ; - oboInOwl:created_by "jl" ; - oboInOwl:creation_date "2010-02-08T02:43:11Z" ; - oboInOwl:hasAlternativeId "GO:0016044" ; - oboInOwl:hasAlternativeId "GO:0044802" ; - oboInOwl:hasExactSynonym "cellular membrane organisation" ; - oboInOwl:hasExactSynonym "cellular membrane organization" ; - oboInOwl:hasExactSynonym "membrane organisation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "membrane organization and biogenesis" ; - oboInOwl:hasRelatedSynonym "single-organism membrane organization" ; - oboInOwl:id "GO:0061024" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_drosophila ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "membrane organization" ; - rdfs:subClassOf obo1:GO_0016043 ; -. -obo1:GO_0065003 - a owl:Class ; - obo1:IAO_0000115 "The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex." ; - oboInOwl:hasAlternativeId "GO:0006461" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "chaperone activity" ; - oboInOwl:hasRelatedSynonym "macromolecular complex assembly" ; - oboInOwl:hasRelatedSynonym "macromolecule complex assembly" ; - oboInOwl:hasRelatedSynonym "protein complex assembly" ; - oboInOwl:hasRelatedSynonym "protein complex formation" ; - oboInOwl:id "GO:0065003" ; - oboInOwl:inSubset go:goslim_chembl ; - oboInOwl:inSubset go:goslim_generic ; - oboInOwl:inSubset go:goslim_metagenomics ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_pombe ; - rdfs:label "protein-containing complex assembly" ; - rdfs:subClassOf obo1:GO_0022607 ; -. -obo1:GO_0065007 - a owl:Class ; - obo1:IAO_0000115 "Any process that modulates a measurable attribute of any biological process, quality or function." ; - oboInOwl:hasBroadSynonym "regulation" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0065007" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "biological regulation" ; - rdfs:subClassOf obo1:GO_0008150 ; -. -obo1:GO_0065008 - a owl:Class ; - obo1:IAO_0000115 "Any process that modulates a qualitative or quantitative trait of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc." ; - oboInOwl:hasExactSynonym "regulation of biological attribute" ; - oboInOwl:hasExactSynonym "regulation of biological characteristic" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0065008" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "regulation of biological quality" ; - rdfs:subClassOf obo1:GO_0065007 ; -. -obo1:GO_0065009 - a owl:Class ; - obo1:IAO_0000115 "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." ; - oboInOwl:hasExactSynonym "regulation of a molecular function" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:id "GO:0065009" ; - oboInOwl:inSubset go:gocheck_do_not_annotate ; - oboInOwl:inSubset go:goslim_pir ; - oboInOwl:inSubset go:goslim_plant ; - rdfs:label "regulation of molecular function" ; - rdfs:subClassOf obo1:GO_0065007 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0003674 ; - ] ; - owl:equivalentClass [ - a owl:Class ; - owl:intersectionOf ( - obo1:GO_0065007 - [ - a owl:Restriction ; - owl:onProperty obo1:RO_0002211 ; - owl:someValuesFrom obo1:GO_0003674 ; - ] - ) ; - ] ; -. -obo1:GO_0071256 - a owl:Class ; - obo1:IAO_0000115 "A protein complex that constitutes a specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. The complex contains a core heterotrimer of alpha, beta and gamma subunits, and may contain additional proteins." ; - oboInOwl:created_by "mah" ; - oboInOwl:creation_date "2009-12-08T02:08:03Z" ; - oboInOwl:hasAlternativeId "GO:0031206" ; - oboInOwl:hasNarrowSynonym "Sec complex-associated translocon complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:0071256" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "translocon complex" ; - rdfs:subClassOf obo1:GO_0032991 ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0005783 ; - ] ; - rdfs:subClassOf [ - a owl:Restriction ; - owl:onProperty obo1:BFO_0000050 ; - owl:someValuesFrom obo1:GO_0016020 ; - ] ; -. -obo1:GO_0071555 - a owl:Class ; - obo1:IAO_0000115 "A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis." ; - oboInOwl:created_by "mah" ; - oboInOwl:creation_date "2010-01-13T03:33:07Z" ; - oboInOwl:hasAlternativeId "GO:0007047" ; - oboInOwl:hasAlternativeId "GO:0044234" ; - oboInOwl:hasExactSynonym "cell wall organisation in other organism" ; - oboInOwl:hasExactSynonym "cell wall organisation" ; - oboInOwl:hasExactSynonym "cell wall organization at cellular level" ; - oboInOwl:hasExactSynonym "cell wall organization in other organism" ; - oboInOwl:hasExactSynonym "cellular cell wall organisation" ; - oboInOwl:hasExactSynonym "cellular cell wall organization" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "cell wall organization and biogenesis" ; - oboInOwl:id "GO:0071555" ; - oboInOwl:inSubset go:goslim_candida ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "cell wall organization" ; - rdfs:subClassOf obo1:GO_0045229 ; -. -obo1:GO_1902600 - a owl:Class ; - obo1:IAO_0000115 "The directed movement of a proton across a membrane." ; - oboInOwl:created_by "pr" ; - oboInOwl:creation_date "2013-12-20T11:08:37Z" ; - oboInOwl:hasAlternativeId "GO:0006818" ; - oboInOwl:hasAlternativeId "GO:0015991" ; - oboInOwl:hasAlternativeId "GO:0015992" ; - oboInOwl:hasBroadSynonym "hydrogen transport" ; - oboInOwl:hasBroadSynonym "proton transport" ; - oboInOwl:hasExactSynonym "hydrogen ion transmembrane transport" ; - oboInOwl:hasExactSynonym "hydrogen transmembrane transport" ; - oboInOwl:hasExactSynonym "proton transmembrane transport" ; - oboInOwl:hasNarrowSynonym "ATP hydrolysis coupled proton transport" ; - oboInOwl:hasNarrowSynonym "passive proton transport, down the electrochemical gradient" ; - oboInOwl:hasOBONamespace "biological_process" ; - oboInOwl:hasRelatedSynonym "hydrogen ion transport" ; - oboInOwl:id "GO:1902600" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "proton transmembrane transport" ; - rdfs:subClassOf obo1:GO_0006811 ; -. -obo1:GO_1990904 - a owl:Class ; - obo1:IAO_0000115 "A macromolecular complex that contains both RNA and protein molecules." ; - oboInOwl:created_by "pr" ; - oboInOwl:creation_date "2015-11-19T12:26:37Z" ; - oboInOwl:hasAlternativeId "GO:0030529" ; - oboInOwl:hasAlternativeId "GO:1990903" ; - oboInOwl:hasDbXref "Wikipedia:Ribonucleoprotein" ; - oboInOwl:hasExactSynonym "RNA-protein complex" ; - oboInOwl:hasExactSynonym "RNP" ; - oboInOwl:hasExactSynonym "protein-RNA complex" ; - oboInOwl:hasExactSynonym "ribonucleoprotein complex" ; - oboInOwl:hasNarrowSynonym "extracellular ribonucleoprotein complex" ; - oboInOwl:hasNarrowSynonym "intracellular ribonucleoprotein complex" ; - oboInOwl:hasOBONamespace "cellular_component" ; - oboInOwl:id "GO:1990904" ; - oboInOwl:inSubset go:goslim_pir ; - rdfs:label "ribonucleoprotein complex" ; - rdfs:subClassOf obo1:GO_0032991 ; -. -obo1:IAO_0000115 - a owl:AnnotationProperty ; - rdfs:label "definition" ; -. -obo1:IAO_0000116 - a owl:AnnotationProperty ; -. -obo1:IAO_0000231 - a owl:AnnotationProperty ; -. -obo1:IAO_0000233 - a owl:AnnotationProperty ; - oboInOwl:hasDbXref "IAO:0000233" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "term_tracker_item" ; - oboInOwl:is_class_level true ; - oboInOwl:is_metadata_tag true ; - oboInOwl:shorthand "term_tracker_item" ; - rdfs:label "term tracker item" ; -. -obo1:IAO_0000589 - a owl:AnnotationProperty ; -. -obo1:IAO_0100001 - a owl:AnnotationProperty ; - rdfs:label "term replaced by" ; -. -obo1:RO_0000053 - oboInOwl:hasDbXref "RO:0000053" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "bearer_of" ; - oboInOwl:shorthand "bearer_of" ; - rdfs:label "bearer of" ; -. -obo1:RO_0000056 - oboInOwl:hasDbXref "RO:0000056" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "participates_in" ; - oboInOwl:shorthand "participates_in" ; - rdfs:label "participates_in" ; -. -obo1:RO_0000057 - oboInOwl:hasDbXref "RO:0000057" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_participant" ; - oboInOwl:shorthand "has_participant" ; - rdfs:label "has participant" ; -. -obo1:RO_0002007 - oboInOwl:hasDbXref "RO:0002007" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "bounding_layer_of" ; - oboInOwl:shorthand "bounding_layer_of" ; - rdfs:label "bounding layer of" ; -. -obo1:RO_0002008 - oboInOwl:hasDbXref "RO:0002008" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "coincident_with" ; - oboInOwl:shorthand "coincident_with" ; - rdfs:label "coincident with" ; -. -obo1:RO_0002013 - oboInOwl:hasDbXref "RO:0002013" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_regulatory_component_activity" ; - oboInOwl:shorthand "has_regulatory_component_activity" ; - rdfs:label "has regulatory component activity" ; -. -obo1:RO_0002014 - oboInOwl:hasDbXref "RO:0002014" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_negative_regulatory_component_activity" ; - oboInOwl:shorthand "has_negative_regulatory_component_activity" ; - rdfs:label "has negative regulatory component activity" ; -. -obo1:RO_0002016 - oboInOwl:hasDbXref "RO:0002016" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_necessary_component_activity" ; - oboInOwl:shorthand "has_necessary_component_activity" ; - rdfs:label "has necessary component activity" ; -. -obo1:RO_0002087 - oboInOwl:hasDbXref "RO:0002087" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "immediately_preceded_by" ; - oboInOwl:shorthand "immediately_preceded_by" ; - rdfs:label "immediately_preceded_by" ; -. -obo1:RO_0002090 - oboInOwl:hasDbXref "RO:0002090" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "immediately_precedes" ; - oboInOwl:shorthand "immediately_precedes" ; - rdfs:label "immediately_precedes" ; -. -obo1:RO_0002091 - a owl:ObjectProperty ; - oboInOwl:hasDbXref "RO:0002091" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "starts_during" ; - oboInOwl:shorthand "starts_during" ; - rdfs:label "starts_during" ; -. -obo1:RO_0002092 - a owl:ObjectProperty ; - a owl:TransitiveProperty ; - oboInOwl:hasDbXref "RO:0002092" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "happens_during" ; - oboInOwl:shorthand "happens_during" ; - rdfs:label "happens during" ; - rdfs:subPropertyOf obo1:RO_0002093 ; -. -obo1:RO_0002093 - a owl:ObjectProperty ; - oboInOwl:hasDbXref "RO:0002093" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "ends_during" ; - oboInOwl:shorthand "ends_during" ; - rdfs:label "ends_during" ; -. -obo1:RO_0002131 - oboInOwl:hasDbXref "RO:0002131" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "overlaps" ; - oboInOwl:shorthand "overlaps" ; - rdfs:label "overlaps" ; -. -obo1:RO_0002161 - a owl:AnnotationProperty ; -. -obo1:RO_0002180 - oboInOwl:hasDbXref "RO:0002180" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_component" ; - oboInOwl:shorthand "has_component" ; - rdfs:label "has component" ; -. -obo1:RO_0002211 - a owl:ObjectProperty ; - a owl:TransitiveProperty ; - oboInOwl:hasDbXref "RO:0002211" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "regulates" ; - oboInOwl:shorthand "regulates" ; - rdfs:label "regulates" ; -. -obo1:RO_0002212 - a owl:ObjectProperty ; - oboInOwl:hasDbXref "RO:0002212" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "negatively_regulates" ; - oboInOwl:shorthand "negatively_regulates" ; - rdfs:label "negatively regulates" ; - rdfs:subPropertyOf obo1:RO_0002211 ; -. -obo1:RO_0002213 - a owl:ObjectProperty ; - oboInOwl:hasDbXref "RO:0002213" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "positively_regulates" ; - oboInOwl:shorthand "positively_regulates" ; - rdfs:label "positively regulates" ; - rdfs:subPropertyOf obo1:RO_0002211 ; - owl:propertyChainAxiom ( - obo1:RO_0002212 - obo1:RO_0002212 - ) ; -. -obo1:RO_0002215 - oboInOwl:hasDbXref "RO:0002215" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "capable_of" ; - oboInOwl:shorthand "capable_of" ; - rdfs:label "capable of" ; -. -obo1:RO_0002216 - oboInOwl:hasDbXref "RO:0002216" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "capable_of_part_of" ; - oboInOwl:shorthand "capable_of_part_of" ; - rdfs:label "capable of part of" ; -. -obo1:RO_0002220 - oboInOwl:hasDbXref "RO:0002220" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "adjacent_to" ; - oboInOwl:shorthand "adjacent_to" ; - rdfs:label "adjacent to" ; -. -obo1:RO_0002224 - oboInOwl:hasDbXref "RO:0002224" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "starts_with" ; - oboInOwl:shorthand "starts_with" ; - rdfs:label "starts with" ; -. -obo1:RO_0002230 - oboInOwl:hasDbXref "RO:0002230" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "ends_with" ; - oboInOwl:shorthand "ends_with" ; - rdfs:label "ends with" ; -. -obo1:RO_0002231 - oboInOwl:hasDbXref "RO:0002231" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_start_location" ; - oboInOwl:shorthand "has_start_location" ; - rdfs:label "has start location" ; -. -obo1:RO_0002232 - oboInOwl:hasDbXref "RO:0002232" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_end_location" ; - oboInOwl:shorthand "has_end_location" ; - rdfs:label "has end location" ; -. -obo1:RO_0002233 - oboInOwl:hasDbXref "RO:0002233" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_input" ; - oboInOwl:shorthand "has_input" ; - rdfs:label "has input" ; -. -obo1:RO_0002234 - oboInOwl:hasDbXref "RO:0002234" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_output" ; - oboInOwl:shorthand "has_output" ; - rdfs:label "has output" ; -. -obo1:RO_0002295 - oboInOwl:hasDbXref "RO:0002295" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_developmental_progression_of" ; - oboInOwl:shorthand "results_in_developmental_progression_of" ; - rdfs:label "results in developmental progression of" ; -. -obo1:RO_0002296 - oboInOwl:hasDbXref "RO:0002296" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_development_of" ; - oboInOwl:shorthand "results_in_development_of" ; - rdfs:label "results in development of" ; -. -obo1:RO_0002297 - oboInOwl:hasDbXref "RO:0002297" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_formation_of" ; - oboInOwl:shorthand "results_in_formation_of" ; - rdfs:label "results in formation of" ; -. -obo1:RO_0002298 - oboInOwl:hasDbXref "RO:0002298" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_morphogenesis_of" ; - oboInOwl:shorthand "results_in_morphogenesis_of" ; - rdfs:label "results in morphogenesis of" ; -. -obo1:RO_0002299 - oboInOwl:hasDbXref "RO:0002299" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_maturation_of" ; - oboInOwl:shorthand "results_in_maturation_of" ; - rdfs:label "results in maturation of" ; -. -obo1:RO_0002304 - oboInOwl:hasDbXref "RO:0002304" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_upstream_of,_positive_effect" ; - oboInOwl:shorthand "causally_upstream_of,_positive_effect" ; - rdfs:label "causally upstream of, positive effect" ; -. -obo1:RO_0002305 - oboInOwl:hasDbXref "RO:0002305" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_upstream_of,_negative_effect" ; - oboInOwl:shorthand "causally_upstream_of,_negative_effect" ; - rdfs:label "causally upstream of, negative effect" ; -. -obo1:RO_0002313 - oboInOwl:hasDbXref "RO:0002313" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "transports_or_maintains_localization_of" ; - oboInOwl:shorthand "transports_or_maintains_localization_of" ; - rdfs:label "transports or maintains localization of" ; -. -obo1:RO_0002315 - oboInOwl:hasDbXref "RO:0002315" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_acquisition_of_features_of" ; - oboInOwl:shorthand "results_in_acquisition_of_features_of" ; - rdfs:label "results in acquisition of features of" ; -. -obo1:RO_0002332 - oboInOwl:hasDbXref "RO:0002332" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "regulates_levels_of" ; - oboInOwl:shorthand "regulates_levels_of" ; - rdfs:label "regulates levels of" ; -. -obo1:RO_0002334 - oboInOwl:hasDbXref "RO:0002334" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "regulated_by" ; - oboInOwl:shorthand "regulated_by" ; - rdfs:label "regulated by" ; -. -obo1:RO_0002335 - oboInOwl:hasDbXref "RO:0002335" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "negatively_regulated_by" ; - oboInOwl:shorthand "negatively_regulated_by" ; - rdfs:label "negatively regulated by" ; -. -obo1:RO_0002336 - oboInOwl:hasDbXref "RO:0002336" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "positively_regulated_by" ; - oboInOwl:shorthand "positively_regulated_by" ; - rdfs:label "positively regulated by" ; -. -obo1:RO_0002338 - oboInOwl:hasDbXref "RO:0002338" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_target_start_location" ; - oboInOwl:shorthand "has_target_start_location" ; - rdfs:label "has target start location" ; -. -obo1:RO_0002339 - oboInOwl:hasDbXref "RO:0002339" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_target_end_location" ; - oboInOwl:shorthand "has_target_end_location" ; - rdfs:label "has target end location" ; -. -obo1:RO_0002340 - oboInOwl:hasDbXref "RO:0002340" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "imports" ; - oboInOwl:shorthand "imports" ; - rdfs:label "imports" ; -. -obo1:RO_0002341 - oboInOwl:hasDbXref "RO:0002341" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_transport_along" ; - oboInOwl:shorthand "results_in_transport_along" ; - rdfs:label "results in transport along" ; -. -obo1:RO_0002342 - oboInOwl:hasDbXref "RO:0002342" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_transport_across" ; - oboInOwl:shorthand "results_in_transport_across" ; - rdfs:label "results in transport across" ; -. -obo1:RO_0002343 - oboInOwl:hasDbXref "RO:0002343" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_growth_of" ; - oboInOwl:shorthand "results_in_growth_of" ; - rdfs:label "results in growth of" ; -. -obo1:RO_0002344 - oboInOwl:hasDbXref "RO:0002344" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_transport_to_from_or_in" ; - oboInOwl:shorthand "results_in_transport_to_from_or_in" ; - rdfs:label "results in transport to from or in" ; -. -obo1:RO_0002345 - oboInOwl:hasDbXref "RO:0002345" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "exports" ; - oboInOwl:shorthand "exports" ; - rdfs:label "exports" ; -. -obo1:RO_0002348 - oboInOwl:hasDbXref "RO:0002348" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_commitment_to" ; - oboInOwl:shorthand "results_in_commitment_to" ; - rdfs:label "results in commitment to" ; -. -obo1:RO_0002349 - oboInOwl:hasDbXref "RO:0002349" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_determination_of" ; - oboInOwl:shorthand "results_in_determination_of" ; - rdfs:label "results in determination of" ; -. -obo1:RO_0002353 - oboInOwl:hasDbXref "RO:0002353" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "output_of" ; - oboInOwl:shorthand "output_of" ; - rdfs:label "output of" ; -. -obo1:RO_0002355 - oboInOwl:hasDbXref "RO:0002355" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_structural_organization_of" ; - oboInOwl:shorthand "results_in_structural_organization_of" ; - rdfs:label "results in structural organization of" ; -. -obo1:RO_0002356 - oboInOwl:hasDbXref "RO:0002356" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_specification_of" ; - oboInOwl:shorthand "results_in_specification_of" ; - rdfs:label "results in specification of" ; -. -obo1:RO_0002404 - oboInOwl:hasDbXref "RO:0002404" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_downstream_of" ; - oboInOwl:shorthand "causally_downstream_of" ; - rdfs:label "causally downstream of" ; -. -obo1:RO_0002405 - oboInOwl:hasDbXref "RO:0002405" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "immediately_causally_downstream_of" ; - oboInOwl:shorthand "immediately_causally_downstream_of" ; - rdfs:label "immediately causally downstream of" ; -. -obo1:RO_0002411 - oboInOwl:hasDbXref "RO:0002411" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_upstream_of" ; - oboInOwl:shorthand "causally_upstream_of" ; - rdfs:label "causally upstream of" ; -. -obo1:RO_0002412 - oboInOwl:hasDbXref "RO:0002412" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "immediately_causally_upstream_of" ; - oboInOwl:shorthand "immediately_causally_upstream_of" ; - rdfs:label "immediately causally upstream of" ; -. -obo1:RO_0002418 - oboInOwl:hasDbXref "RO:0002418" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_upstream_of_or_within" ; - oboInOwl:shorthand "causally_upstream_of_or_within" ; - rdfs:label "causally upstream of or within" ; -. -obo1:RO_0002427 - oboInOwl:hasDbXref "RO:0002427" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "causally_downstream_of_or_within" ; - oboInOwl:shorthand "causally_downstream_of_or_within" ; - rdfs:label "causally downstream of or within" ; -. -obo1:RO_0002505 - oboInOwl:hasDbXref "RO:0002505" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_intermediate" ; - oboInOwl:shorthand "has_intermediate" ; - rdfs:label "has intermediate" ; -. -obo1:RO_0002565 - oboInOwl:hasDbXref "RO:0002565" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_movement_of" ; - oboInOwl:shorthand "results_in_movement_of" ; - rdfs:label "results in movement of" ; -. -obo1:RO_0002588 - oboInOwl:hasDbXref "RO:0002588" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_assembly_of" ; - oboInOwl:shorthand "results_in_assembly_of" ; - rdfs:label "results_in_assembly_of" ; -. -obo1:RO_0002590 - oboInOwl:hasDbXref "RO:0002590" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_disassembly_of" ; - oboInOwl:shorthand "results_in_disassembly_of" ; - rdfs:label "results_in_disassembly_of" ; -. -obo1:RO_0002591 - oboInOwl:hasDbXref "RO:0002591" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_remodeling_of" ; - oboInOwl:shorthand "results_in_remodeling_of" ; - rdfs:label "results in remodeling of" ; -. -obo1:RO_0002592 - oboInOwl:hasDbXref "RO:0002592" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_organization_of" ; - oboInOwl:shorthand "results_in_organization_of" ; - rdfs:label "results in organization of" ; -. -obo1:RO_0002608 - oboInOwl:hasDbXref "RO:0002608" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "process_has_causal_agent" ; - oboInOwl:shorthand "process_has_causal_agent" ; - rdfs:label "process has causal agent" ; -. -obo1:RO_0003000 - oboInOwl:hasDbXref "RO:0003000" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "produces" ; - oboInOwl:shorthand "produces" ; - rdfs:label "produces" ; -. -obo1:RO_0003001 - oboInOwl:hasDbXref "RO:0003001" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "produced_by" ; - oboInOwl:shorthand "produced_by" ; - rdfs:label "produced by" ; -. -obo1:RO_0004007 - oboInOwl:hasDbXref "RO:0004007" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_primary_input_or_output" ; - oboInOwl:shorthand "has_primary_input_or_output" ; - rdfs:label "has primary input or output" ; -. -obo1:RO_0004008 - oboInOwl:hasDbXref "RO:0004008" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_primary_output" ; - oboInOwl:shorthand "has_primary_output" ; - rdfs:label "has primary output" ; -. -obo1:RO_0004009 - oboInOwl:hasDbXref "RO:0004009" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "has_primary_input" ; - oboInOwl:shorthand "has_primary_input" ; - rdfs:label "has primary input" ; -. -obo1:RO_0012003 - oboInOwl:hasDbXref "RO:0012003" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "acts_on_population_of" ; - oboInOwl:shorthand "acts_on_population_of" ; - rdfs:label "acts on population of" ; -. -obo1:RO_0012008 - oboInOwl:hasDbXref "RO:0012008" ; - oboInOwl:hasOBONamespace "external" ; - oboInOwl:id "results_in_fusion_of" ; - oboInOwl:shorthand "results_in_fusion_of" ; - rdfs:label "results in fusion of" ; -. -go:chebi_ph7_3 - a owl:AnnotationProperty ; - rdfs:comment "Rhea list of ChEBI terms representing the major species at pH 7.3." ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:gocheck_do_not_annotate - a owl:AnnotationProperty ; - rdfs:comment "Term not to be used for direct annotation" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:gocheck_do_not_manually_annotate - a owl:AnnotationProperty ; - rdfs:comment "Term not to be used for direct manual annotation" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_agr - a owl:AnnotationProperty ; - rdfs:comment "AGR slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_aspergillus - a owl:AnnotationProperty ; - rdfs:comment "Aspergillus GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_candida - a owl:AnnotationProperty ; - rdfs:comment "Candida GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_chembl - a owl:AnnotationProperty ; - rdfs:comment "ChEMBL protein targets summary" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_drosophila - a owl:AnnotationProperty ; - rdfs:comment "Drosophila GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_flybase_ribbon - a owl:AnnotationProperty ; - rdfs:comment "FlyBase Drosophila GO ribbon slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_generic - a owl:AnnotationProperty ; - rdfs:comment "Generic GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_metagenomics - a owl:AnnotationProperty ; - rdfs:comment "Metagenomics GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_mouse - a owl:AnnotationProperty ; - rdfs:comment "Mouse GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_pir - a owl:AnnotationProperty ; - rdfs:comment "PIR GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_plant - a owl:AnnotationProperty ; - rdfs:comment "Plant GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_pombe - a owl:AnnotationProperty ; - rdfs:comment "Fission yeast GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_synapse - a owl:AnnotationProperty ; - rdfs:comment "synapse GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:goslim_yeast - a owl:AnnotationProperty ; - rdfs:comment "Yeast GO slim" ; - rdfs:subPropertyOf oboInOwl:SubsetProperty ; -. -go:syngo_official_label - a owl:AnnotationProperty ; - rdfs:label "label approved by the SynGO project" ; - rdfs:subPropertyOf oboInOwl:SynonymTypeProperty ; -. -go:systematic_synonym - a owl:AnnotationProperty ; - oboInOwl:hasScope oboInOwl:hasExactSynonym ; - rdfs:label "Systematic synonym" ; - rdfs:subPropertyOf oboInOwl:SynonymTypeProperty ; -. -<http://purl.obolibrary.org/obo/go/subsets/goslim_pir.owl> - a owl:Ontology ; - owl:versionIRI <http://purl.obolibrary.org/obo/go/2021-07-02/subsets/goslim_pir.owl> ; -. -oboInOwl:SubsetProperty - a owl:AnnotationProperty ; - rdfs:label "subset_property" ; -. -oboInOwl:SynonymTypeProperty - a owl:AnnotationProperty ; - rdfs:label "synonym_type_property" ; -. -oboInOwl:consider - a owl:AnnotationProperty ; - rdfs:label "consider" ; -. -oboInOwl:created_by - a owl:AnnotationProperty ; -. -oboInOwl:creation_date - a owl:AnnotationProperty ; -. -oboInOwl:default-namespace - a owl:AnnotationProperty ; -. -oboInOwl:hasAlternativeId - a owl:AnnotationProperty ; - rdfs:label "has_alternative_id" ; -. -oboInOwl:hasBroadSynonym - a owl:AnnotationProperty ; - rdfs:label "has_broad_synonym" ; -. -oboInOwl:hasDbXref - a owl:AnnotationProperty ; - rdfs:label "database_cross_reference" ; -. -oboInOwl:hasExactSynonym - a owl:AnnotationProperty ; - rdfs:label "has_exact_synonym" ; -. -oboInOwl:hasNarrowSynonym - a owl:AnnotationProperty ; - rdfs:label "has_narrow_synonym" ; -. -oboInOwl:hasOBOFormatVersion - a owl:AnnotationProperty ; - rdfs:label "has_obo_format_version" ; -. -oboInOwl:hasOBONamespace - a owl:AnnotationProperty ; - rdfs:label "has_obo_namespace" ; -. -oboInOwl:hasRelatedSynonym - a owl:AnnotationProperty ; - rdfs:label "has_related_synonym" ; -. -oboInOwl:hasScope - a owl:AnnotationProperty ; - rdfs:label "has_scope" ; -. -oboInOwl:hasSynonymType - a owl:AnnotationProperty ; - rdfs:label "has_synonym_type" ; -. -<http://www.geneontology.org/formats/oboInOwl#http://purl.obolibrary.org/obo/IAO_0000233> - a owl:AnnotationProperty ; -. -<http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/source> - a owl:AnnotationProperty ; -. -oboInOwl:id - a owl:AnnotationProperty ; -. -oboInOwl:inSubset - a owl:AnnotationProperty ; - rdfs:label "in_subset" ; -. -oboInOwl:is_class_level - a owl:AnnotationProperty ; -. -oboInOwl:is_metadata_tag - a owl:AnnotationProperty ; -. -oboInOwl:shorthand - a owl:AnnotationProperty ; - rdfs:label "shorthand" ; -. -oboInOwl:source - a owl:AnnotationProperty ; -. -rdfs:comment - a owl:AnnotationProperty ; -. -rdfs:label - a owl:AnnotationProperty ; -. -owl:deprecated - a owl:AnnotationProperty ; -. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:1001" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0030894 ; - owl:annotatedTarget "DNA synthesome complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:2575" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005942 ; - owl:annotatedTarget "PI3-kinase p85-subunit alpha- PI3-kinase p110 complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:309" ; - oboInOwl:hasDbXref "PMID:12006500" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0030894 ; - owl:annotatedTarget "RC complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:309" ; - oboInOwl:hasDbXref "PMID:12006500" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0030894 ; - owl:annotatedTarget "replication-competent complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:429" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005942 ; - owl:annotatedTarget "PIK3C3-PIK3R4 complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "CORUM:439" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005942 ; - owl:annotatedTarget "PIK3CA-PIK3R1 complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "DOI:10.1016/S0040-4020(03)00944-X" ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051213 ; - owl:annotatedTarget "Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "EC:1.18.6.1" ; - oboInOwl:hasDbXref "MetaCyc:CPLX-186" ; - oboInOwl:hasDbXref "MetaCyc:CPLX-525" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016610 ; - owl:annotatedTarget "An enzyme complex composed of two proteins, dinitrogenase and nitrogenase reductase; dinitrogenase is tetrameric with an alpha2-beta2 structure and nitrogenase reductase is a homodimer, and both are associated with metal ions, which differ between species. Both proteins are required for the enzyme activity of the complex, the formation of oxidized ferredoxin and ammonia from reduced ferredoxin and nitrogen." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "EC:6.-.-.-" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016874 ; - owl:annotatedTarget "Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "EC:7.4.2.3" ; - oboInOwl:hasDbXref "PMID:27554484" ; - oboInOwl:hasDbXref "PMID:8851659" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005744 ; - owl:annotatedTarget "The protein transport machinery of the mitochondrial inner membrane that typically transports proteins that possess a matrix-targeting N-terminal presequence. The TIM23 complex contains three essential Tim proteins: Tim17 and Tim23 are thought to build a preprotein translocation channel while Tim44 interacts transiently with the matrix heat-shock protein Hsp70 to form an ATP-driven import motor." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:BHF" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:rph" ; - oboInOwl:hasDbXref "NIF_Subcellular:nlx_subcell_20090513" ; - oboInOwl:hasDbXref "PMID:21123617" ; - oboInOwl:hasDbXref "PMID:28089324" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031012 ; - owl:annotatedTarget "A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:TermGenie" ; - oboInOwl:hasDbXref "GOC:pr" ; - oboInOwl:hasDbXref "GO_REF:0000069" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_1902600 ; - owl:annotatedTarget "The directed movement of a proton across a membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:TermGenie" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0006996 ; - owl:annotatedTarget "single organism organelle organization" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:TermGenie" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0051641 ; - owl:annotatedTarget "single organism cellular localization" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:TermGenie" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0051179 ; - owl:annotatedTarget "single organism localization" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051606 ; - owl:annotatedTarget "The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0781735149" ; - oboInOwl:hasDbXref "PMID:15928678" ; - oboInOwl:hasDbXref "PMID:16153240" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042611 ; - owl:annotatedTarget "A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0781765196" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019814 ; - owl:annotatedTarget "A protein complex that in its canonical form is composed of two identical immunoglobulin heavy chains and two identical immunoglobulin light chains, held together by disulfide bonds and sometimes complexed with additional proteins. An immunoglobulin complex may be embedded in the plasma membrane or present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "http://wiki.geneontology.org/index.php/Why_isn%27t_interleukin_in_GO%3F" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0001816 ; - owl:annotatedTarget "interleukin production" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "http://wiki.geneontology.org/index.php/Why_isn%27t_interleukin_in_GO%3F" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0001816 ; - owl:annotatedTarget "interleukin secretion" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0001816 ; - owl:annotatedTarget "interferon production" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0001816 ; - owl:annotatedTarget "interferon secretion" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "GO_REF:0000022" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0002376 ; - owl:annotatedTarget "Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "ISBN:0781735149" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0001816 ; - owl:annotatedTarget "The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "ISBN:0781735149" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032997 ; - owl:annotatedTarget "A protein complex composed of a subunit or subunits capable of binding the Fc portion of an immunoglobulin with additional signaling components. The complex functions as a receptor for immunoglobulin." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - oboInOwl:hasDbXref "PMID:12019563" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0001917 ; - owl:annotatedTarget "The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0001906 ; - owl:annotatedTarget "Any process in an organism that results in the killing of its own cells or those of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:add" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031640 ; - owl:annotatedTarget "Any process in an organism that results in the killing of cells of another organism, including in some cases the death of the other organism. Killing here refers to the induction of death in one cell by another cell, not cell-autonomous death due to internal or other environmental conditions." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050896 ; - owl:annotatedTarget "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dgf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005215 ; - owl:annotatedTarget "Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dos" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051179 ; - owl:annotatedTarget "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dos" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051234 ; - owl:annotatedTarget "Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043062 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045229 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051276 ; - owl:annotatedTarget "A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. This term covers covalent modifications at the molecular level as well as spatial relationships among the major components of a chromosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050878 ; - owl:annotatedTarget "Any process that modulates the levels of body fluids." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050789 ; - owl:annotatedTarget "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016043 ; - owl:annotatedTarget "A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:08789310662000" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016192 ; - owl:annotatedTarget "A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "GOC:mtg_cardio" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050877 ; - owl:annotatedTarget "A organ system process carried out by any of the organs or tissues of neurological system." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006662 ; - owl:annotatedTarget "The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006725 ; - owl:annotatedTarget "The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015837 ; - owl:annotatedTarget "The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006139 ; - owl:annotatedTarget "Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006276 ; - owl:annotatedTarget "The maintenance of the integrity of extrachromosomal plasmid DNA; includes processes that ensure plasmids are retained in the daughter cells after cell division." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006766 ; - owl:annotatedTarget "The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006790 ; - owl:annotatedTarget "The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006793 ; - owl:annotatedTarget "The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006811 ; - owl:annotatedTarget "The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006836 ; - owl:annotatedTarget "The directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006865 ; - owl:annotatedTarget "The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008289 ; - owl:annotatedTarget "Binding to a lipid." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008643 ; - owl:annotatedTarget "The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are a group of organic compounds based of the general formula Cx(H2O)y." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015031 ; - owl:annotatedTarget "The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015669 ; - owl:annotatedTarget "The directed movement of substances that are gaseous in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015791 ; - owl:annotatedTarget "The directed movement of polyols, any polyhydric alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015833 ; - owl:annotatedTarget "The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015835 ; - owl:annotatedTarget "The directed movement of peptidoglycans, a class of glycoconjugates found in bacterial cell walls, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015891 ; - owl:annotatedTarget "The directed movement of siderophores, low molecular weight Fe(III)-chelating substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015893 ; - owl:annotatedTarget "The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015920 ; - owl:annotatedTarget "The directed movement of lipopolysaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015931 ; - owl:annotatedTarget "The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015948 ; - owl:annotatedTarget "The chemical reactions and pathways resulting in the formation of methane, a colorless, odorless, flammable gas with the formula CH4. It is the simplest of the alkanes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016049 ; - owl:annotatedTarget "The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016597 ; - owl:annotatedTarget "Binding to an amino acid, organic acids containing one or more amino substituents." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019842 ; - owl:annotatedTarget "Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042044 ; - owl:annotatedTarget "The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045182 ; - owl:annotatedTarget "Any molecular function involved in the initiation, activation, perpetuation, repression or termination of polypeptide synthesis at the ribosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045230 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the capsule, a protective structure surrounding some species of bacteria and fungi." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045231 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a slime layer. A slime layer is an easily removed, diffuse, unorganized layer of extracellular material that surrounds a cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045499 ; - owl:annotatedTarget "Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a lower concentration of that signal." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045735 ; - owl:annotatedTarget "Functions in the storage of nutritious substrates." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046794 ; - owl:annotatedTarget "The directed movement of a virus, or part of a virus, into, out of, or within a host cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046812 ; - owl:annotatedTarget "Binding to the surface of a host cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046864 ; - owl:annotatedTarget "The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046903 ; - owl:annotatedTarget "The controlled release of a substance by a cell or a tissue." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050840 ; - owl:annotatedTarget "Binding to a component of the extracellular matrix." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051180 ; - owl:annotatedTarget "The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051189 ; - owl:annotatedTarget "The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051258 ; - owl:annotatedTarget "The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051261 ; - owl:annotatedTarget "The process in which protein polymers, compounds composed of a large number of component monomers, are broken down. Depolymerization occurs by the successive removal of monomers from an existing poly- or oligomeric protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051604 ; - owl:annotatedTarget "Any process leading to the attainment of the full functional capacity of a protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051640 ; - owl:annotatedTarget "Any process in which an organelle is transported to, and/or maintained in, a specific location." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051703 ; - owl:annotatedTarget "Any process in which an organism has an effect on an organism of the same species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ai" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051705 ; - owl:annotatedTarget "OBSOLETE. Any process in which an organism has a behavioral effect on another organism of the same or different species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:al" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "PMID:15030757" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005634 ; - owl:annotatedTarget "horsetail nucleus" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:al" ; - oboInOwl:hasDbXref "PMID:7603572" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0005643 ; - owl:annotatedTarget "nucleopore" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:aruk" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "PMID:24619342" ; - oboInOwl:hasDbXref "PMID:29383328" ; - oboInOwl:hasDbXref "PMID:31998110" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045202 ; - owl:annotatedTarget "The junction between an axon of one neuron and a dendrite of another neuron, a muscle fiber or a glial cell. As the axon approaches the synapse it enlarges into a specialized structure, the presynaptic terminal bouton, which contains mitochondria and synaptic vesicles. At the tip of the terminal bouton is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic terminal bouton secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:autophagy" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - oboInOwl:hasDbXref "PMID:11099404" ; - oboInOwl:hasDbXref "PMID:9412464" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006914 ; - owl:annotatedTarget "The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:cilia" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005930 ; - owl:annotatedTarget "The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:vk" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043021 ; - owl:annotatedTarget "Binding to a complex of RNA and protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:imk" ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:ns" ; - oboInOwl:hasDbXref "PMID:12101122" ; - oboInOwl:hasDbXref "PMID:15380095" ; - oboInOwl:hasDbXref "PMID:16983191" ; - oboInOwl:hasDbXref "PMID:18165305" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032153 ; - owl:annotatedTarget "The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016032 ; - owl:annotatedTarget "A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty oboInOwl:hasBroadSynonym ; - owl:annotatedSource obo1:GO_0006464 ; - owl:annotatedTarget "protein modification process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0016032 ; - owl:annotatedTarget "virus process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0046794 ; - owl:annotatedTarget "viral transport" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0046794 ; - owl:annotatedTarget "virion transport" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0040007 ; - owl:annotatedTarget "The increase in size or mass of an entire organism, a part of an organism or a cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:9407099" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0033256 ; - owl:annotatedTarget "A protein complex containing an inhibitory-kappaB (I-kappaB/IKB) protein and one or more copies of an NF-kappaB protein. In the resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006508 ; - owl:annotatedTarget "The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:signaling" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0038023 ; - owl:annotatedTarget "Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:vk" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0043021 ; - owl:annotatedTarget "protein-RNA complex binding" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "GOC:vk" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0043021 ; - owl:annotatedTarget "ribonucleoprotein binding" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "PMID:24587488" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005942 ; - owl:annotatedTarget "A protein complex capable of phosphatidylinositol 3-kinase activity and containing subunits of any phosphatidylinositol 3-kinase (PI3K) enzyme. These complexes are divided in three classes (called I, II and III) that differ for their presence across taxonomic groups and for the type of their constituents. Catalytic subunits of phosphatidylinositol 3-kinase enzymes are present in all 3 classes; regulatory subunits of phosphatidylinositol 3-kinase enzymes are present in classes I and III; adaptor proteins have been observed in class II complexes and may be present in other classes too." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - oboInOwl:hasDbXref "PMID:26220253" ; - oboInOwl:hasDbXref "PMID:27385586" ; - oboInOwl:hasDbXref "PMID:9700157" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030904 ; - owl:annotatedTarget "A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008287 ; - owl:annotatedTarget "A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031248 ; - owl:annotatedTarget "A complex that catalyzes the transfer of an acetyl group to a protein acceptor molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0035097 ; - owl:annotatedTarget "A multimeric complex that is able to catalyze the addition of methyl groups to histone proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0031640 ; - owl:annotatedTarget "killing of cells of another organism" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bf" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0038023 ; - owl:annotatedTarget "receptor activity involved in signal transduction" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045251 ; - owl:annotatedTarget "A protein complex facilitating the electron transfer from an acyl-CoA molecule to ubiquinone via its flavin adenine dinucleotide (FAD) cofactor. Usually contains an alpha and a beta subunit and the structural cofactor adenosine monophosphate (AMP). Part of a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors in the electron transport system." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - oboInOwl:hasDbXref "PMID:12145219" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0000109 ; - owl:annotatedTarget "UvrBC complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0017053 ; - owl:annotatedTarget "transcription factor inhibitor complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0042824 ; - owl:annotatedTarget "peptide-loading complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0045251 ; - owl:annotatedTarget "ETF complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bhm" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0042824 ; - owl:annotatedTarget "PLC" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:bm" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0004803 ; - owl:annotatedTarget "Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cab2" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006805 ; - owl:annotatedTarget "The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cab2" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009404 ; - owl:annotatedTarget "The chemical reactions and pathways involving a toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cab2" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0017144 ; - owl:annotatedTarget "The chemical reactions and pathways involving a drug, a substance used in the diagnosis, treatment or prevention of a disease; as used here antibiotic substances (see antibiotic metabolism) are considered to be drugs, even if not used in medical or veterinary practice." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cc" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044419 ; - owl:annotatedTarget "Any process evolved to enable an interaction with an organism of a different species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ceb" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005488 ; - owl:annotatedTarget "The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cilia" ; - oboInOwl:hasDbXref "GOC:curators" ; - oboInOwl:hasDbXref "GOC:kmv" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - oboInOwl:hasDbXref "PMID:16824949" ; - oboInOwl:hasDbXref "PMID:17009929" ; - oboInOwl:hasDbXref "PMID:20144998" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005929 ; - owl:annotatedTarget "A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cilia" ; - oboInOwl:hasDbXref "GOC:jh2" ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "PMID:7787060" ; - oboInOwl:hasDbXref "http:en.wikipedia.org/wiki/Flagellum#Bacterial" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009288 ; - owl:annotatedTarget "A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cilia" ; - oboInOwl:hasDbXref "GOC:kmv" ; - oboInOwl:hasDbXref "PMID:14570576" ; - oboInOwl:hasDbXref "PMID:22118932" ; - oboInOwl:hasDbXref "PMID:23945166" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030990 ; - owl:annotatedTarget "A nonmembrane-bound oligomeric protein complex that participates in bidirectional transport of molecules (cargo) along axonemal microtubules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:cjm" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0000502 ; - owl:annotatedTarget "proteasome" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:clt" ; - oboInOwl:hasDbXref "ISBN:0471940526" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030428 ; - owl:annotatedTarget "A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:clt" ; - oboInOwl:hasDbXref "PMID:12134075" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000930 ; - owl:annotatedTarget "A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:clt" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009292 ; - owl:annotatedTarget "In the absence of a sexual life cycle, the process involved in the introduction of genetic information to create a genetically different individual." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:curators" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032501 ; - owl:annotatedTarget "Any biological process, occurring at the level of a multicellular organism, pertinent to its function." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:curators" ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007028 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:curators" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046906 ; - owl:annotatedTarget "Binding to a tetrapyrrole, a compound containing four pyrrole nuclei variously substituted and linked to each other through carbons at the alpha position." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:curators" ; - oboInOwl:hasDbXref "ISBN:0201090910" ; - oboInOwl:hasDbXref "MetaCyc:Fermentation" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006113 ; - owl:annotatedTarget "The anaerobic enzymatic conversion of organic compounds, especially carbohydrates, coupling the oxidation and reduction of NAD/H and the generation of adenosine triphosphate (ATP)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:curators" ; 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-]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dgh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0040011 ; - owl:annotatedTarget "Self-propelled movement of a cell or organism from one location to another." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:di" ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:pr" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051301 ; - owl:annotatedTarget "The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:di" ; - oboInOwl:hasDbXref "PMID:11932229" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042710 ; - owl:annotatedTarget "A process in which planktonically growing microorganisms grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription." ; 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A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0003824 ; - owl:annotatedTarget "enzyme activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0032989 ; - owl:annotatedTarget "cellular structure morphogenesis" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0006139 ; - owl:annotatedTarget "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0015931 ; - owl:annotatedTarget "nucleobase, nucleoside, nucleotide and nucleic acid transport" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0019787 ; - owl:annotatedTarget "small conjugating protein transferase activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0030234 ; - owl:annotatedTarget "catalytic regulator activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0019787 ; - owl:annotatedTarget "small conjugating protein ligase activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0019787 ; - owl:annotatedTarget "E3" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0043005 ; - owl:annotatedTarget "nerve fiber" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:dph" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0048469 ; - owl:annotatedTarget "functional differentiation" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ds" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0140514031" ; - oboInOwl:hasDbXref "PMID:9821949" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009521 ; - owl:annotatedTarget "A complex located in a photosynthetic membrane that consists of a photoreaction center associated with accessory pigments and electron carriers. Examples of this component are found in Arabidopsis thaliana and in photosynthetic bacterial and archaeal species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ds" ; - oboInOwl:hasDbXref "GOC:mlg" ; - oboInOwl:hasDbXref "http://pathmicro.med.sc.edu/fox/cell_envelope.htm" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030313 ; - owl:annotatedTarget "An envelope that surrounds a bacterial cell and includes the cytoplasmic membrane and everything external, encompassing the periplasmic space, cell wall, and outer membrane if present." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ds" ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009579 ; - owl:annotatedTarget "A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ebc" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048771 ; - owl:annotatedTarget "The reorganization or renovation of existing tissues. This process can either change the characteristics of a tissue such as in blood vessel remodeling, or result in the dynamic equilibrium of a tissue such as in bone remodeling." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ecd" ; - oboInOwl:hasDbXref "PMID:15661519" ; - oboInOwl:hasDbXref "PMID:7840137" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032421 ; - owl:annotatedTarget "A bundle of cross-linked stereocilia, arranged around a kinocilium on the apical surface of a sensory hair cell (e.g. a neuromast, auditory or vestibular hair cell). Stereocilium bundles act as mechanosensory organelles by responding to fluid motion or fluid pressure changes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:editors" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - oboInOwl:hasDbXref "PMID:19239890" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005681 ; - owl:annotatedTarget "Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ef" ; - oboInOwl:hasDbXref "GOC:mtg_muscle" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006936 ; - owl:annotatedTarget "A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "InterPro:IPR003488" ; - oboInOwl:hasDbXref "PMID:12912992" ; - oboInOwl:hasDbXref "PMID:32414915" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0033061 ; - owl:annotatedTarget "A protein complex containing accessory proteins which bind a recombinase (e.g. Rad51) and bind single-stranded DNA (ssDNA), and promote nucleation of the recombinase onto ssDNA through facilitating recombinase-RPA exchange." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - oboInOwl:hasDbXref "PMID:17268547" ; - oboInOwl:hasDbXref "PMID:21795393" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000796 ; - owl:annotatedTarget "A multisubunit protein complex that plays a central role in chromosome condensation in meiosis and mitosis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - oboInOwl:hasDbXref "PMID:6286142" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009009 ; - owl:annotatedTarget "Catalysis of the formation of new phosphodiester bonds between a pair of short, unique target DNA sequences." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000746 ; - owl:annotatedTarget "The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000776 ; - owl:annotatedTarget "A multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000782 ; - owl:annotatedTarget "A complex of DNA and protein located at the end of a linear chromosome that protects and stabilizes a linear chromosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000786 ; - owl:annotatedTarget "A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:elh" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000808 ; - owl:annotatedTarget "A multisubunit complex that is located at the replication origins of a chromosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ew" ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "PMID:14500720" ; - oboInOwl:hasDbXref "PMID:17215295" ; - oboInOwl:hasDbXref "PMID:22308316" ; - oboInOwl:hasDbXref "PMID:22572993" ; - oboInOwl:hasDbXref "PMID:23028141" ; - oboInOwl:hasDbXref "PMID:7813015" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000439 ; - owl:annotatedTarget "The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:giardia" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005739 ; - owl:annotatedTarget "A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:giardia" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - oboInOwl:hasDbXref "PMID:15134259" ; - oboInOwl:hasDbXref "Wikipedia:Microbial_cyst" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005618 ; - owl:annotatedTarget "The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000003 ; - owl:annotatedTarget "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:md" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042597 ; - owl:annotatedTarget "The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:mtg_cell_cycle" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007049 ; - owl:annotatedTarget "The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "GOC:rb" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006457 ; - owl:annotatedTarget "The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006081 ; - owl:annotatedTarget "The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042056 ; - owl:annotatedTarget "Providing the environmental signal that initiates the directed movement of a motile cell or organism towards a higher concentration of that signal." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008152 ; - owl:annotatedTarget "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "ISBN:0198599560" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008290 ; - owl:annotatedTarget "A heterodimer consisting of alpha and beta subunits that binds to and caps the barbed ends of actin filaments, thereby regulating the polymerization of actin monomers but not severing actin filaments." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "PMID:15035041" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043591 ; - owl:annotatedTarget "The structures that lie outside the inner membrane and surround the entire endospore; consists of a peptidoglycan-containing inner layer (the endospore cortex) surrounded by a multilayered proteinaceous coat. An exosporium may be present as an extreme outer layer." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - oboInOwl:hasDbXref "http://www.metacyc.org" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044238 ; - owl:annotatedTarget "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005515 ; - owl:annotatedTarget "Binding to a protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005576 ; - owl:annotatedTarget "The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005634 ; - owl:annotatedTarget "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006412 ; - owl:annotatedTarget "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006464 ; - owl:annotatedTarget "The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006518 ; - owl:annotatedTarget "The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008037 ; - owl:annotatedTarget "The process in which a cell in an organism interprets its surroundings." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016491 ; - owl:annotatedTarget "Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019748 ; - owl:annotatedTarget "The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030312 ; - owl:annotatedTarget "A structure that lies outside the plasma membrane and surrounds the entire cell or cells. This does not include the periplasmic space." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031992 ; - owl:annotatedTarget "The biological transducer activity that accepts energy and converts it to another form, often by transfer to another molecule within the cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042908 ; - owl:annotatedTarget "The directed movement of a xenobiotic, a compound foreign to living organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043025 ; - owl:annotatedTarget "The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043226 ; - owl:annotatedTarget "Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043229 ; - owl:annotatedTarget "Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043231 ; - owl:annotatedTarget "Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043232 ; - owl:annotatedTarget "Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043235 ; - owl:annotatedTarget "Any protein complex that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043412 ; - owl:annotatedTarget "The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048180 ; - owl:annotatedTarget "A nonsteroidal regulator, composed of two covalently linked inhibin beta subunits, inhibin beta-A and inhibin beta-B (sometimes known as activin beta or activin/inhibin beta). There are three forms of activin complex, activin A, which is composed of 2 inhibin beta-A subunits, activin B, which is composed of 2 inhibin beta-B subunits, and activin AB, which is composed of an inhibin beta-A and an inhibin beta-B subunit." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048469 ; - owl:annotatedTarget "A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:go_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050761 ; - owl:annotatedTarget "The chemical reactions and pathways involving depsipeptides, a linear or cyclic compound composed of both amino acids and hydroxy acids in peptide and ester bonds respectively." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:hb" ; - oboInOwl:hasDbXref "GOC:pf" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007155 ; - owl:annotatedTarget "The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:hb" ; - oboInOwl:hasDbXref "GOC:sart" ; - oboInOwl:hasDbXref "PMID:8646774" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016028 ; - owl:annotatedTarget "The specialized microvilli-containing organelle on the apical surfaces of a photoreceptor cell containing the visual pigment rhodopsin and most of the proteins involved in phototransduction." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:hjd" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:pde" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006730 ; - owl:annotatedTarget "The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:hjd" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0001882 ; - owl:annotatedTarget "Binding to a nucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked either to ribose or deoxyribose." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:hjd" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0002054 ; - owl:annotatedTarget "Binding to a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007586 ; - owl:annotatedTarget "The whole of the physical, chemical, and biochemical processes carried out by multicellular organisms to break down ingested nutrients into components that may be easily absorbed and directed into metabolism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - oboInOwl:hasDbXref "PMID:27875684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0022406 ; - owl:annotatedTarget "The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0022411 ; - owl:annotatedTarget "A cellular process that results in the breakdown of a cellular component." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0022607 ; - owl:annotatedTarget "The aggregation, arrangement and bonding together of a cellular component." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0022610 ; - owl:annotatedTarget "The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032502 ; - owl:annotatedTarget "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:isa_complete" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0065009 ; - owl:annotatedTarget "Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jh2" ; - oboInOwl:hasDbXref "PMID:9529603" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000151 ; - owl:annotatedTarget "A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jh2" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0006354 ; - owl:annotatedTarget "transcription elongation, DNA-dependent" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jh2" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0016874 ; - owl:annotatedTarget "synthetase activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jid" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048284 ; - owl:annotatedTarget "The creation of a single organelle from two or more organelles." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jid" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048285 ; - owl:annotatedTarget "The creation of two or more organelles by division of one organelle." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jid" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048308 ; - owl:annotatedTarget "The partitioning of organelles between daughter cells at cell division." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jid" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048511 ; - owl:annotatedTarget "Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "PMID:16858867" ; - oboInOwl:hasDbXref "Wikipedia:Rna_polymerase_ii" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016591 ; - owl:annotatedTarget "A nuclear DNA-directed RNA polymerase complex containing an RNA polymerase II core enzyme as well as additional proteins and transcription factor complexes, that are capable of promoter recognition and transcription initiation from an RNA polymerase II promoter in vivo. These additional components may include general transcription factor complexes TFIIA, TFIID, TFIIE, TFIIF, or TFIIH, as well as Mediator, SWI/SNF, GCN5, or SRBs and confer the ability to recognize promoters." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "Wikipedia:Alkyne" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043452 ; - owl:annotatedTarget "The chemical reactions and pathways involving an alkyne, any acyclic branched or unbranched hydrocarbon (compound composed only of carbon and hydrogen) having a carbon-carbon triple bond and the general formula CnH2n-2, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006304 ; - owl:annotatedTarget "The covalent alteration of one or more nucleotide sites in DNA, resulting in a change in its properties." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:mtg_cell_cycle" ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007059 ; - owl:annotatedTarget "The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:12121720" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009317 ; - owl:annotatedTarget "A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008641 ; - owl:annotatedTarget "Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044085 ; - owl:annotatedTarget "A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "GOC:sm" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009986 ; - owl:annotatedTarget "The external part of the cell wall and/or plasma membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "PMID:11421269" ; - oboInOwl:hasDbXref "PMID:15111107" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043190 ; - owl:annotatedTarget "A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:sp" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "PMID:9887095" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008278 ; - owl:annotatedTarget "A protein complex that is required for sister chromatid cohesion in eukaryotes. The cohesin complex forms a molecular ring complex, and is composed of structural maintenance of chromosomes (SMC) and kleisin proteins. For example, in yeast, the complex is composed of the SMC proteins Smc1p and Smc3p, and the kleisin protein Scc1p. In vertebrates, the complex is composed of the SMC1 (SMC1A or SMC1B) and SMC3 heterodimer attached via their hinge domains to a kleisin (RAD21, REC8 or RAD21L) which links them, and one STAG protein (STAG1, STAG2 or STAG3)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:txnOH" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006351 ; - owl:annotatedTarget "The cellular synthesis of RNA on a template of DNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "PMID:11472912" ; - oboInOwl:hasDbXref "PMID:21114594" ; - oboInOwl:hasDbXref "PMID:8740415" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000128 ; - owl:annotatedTarget "The reversible, non-sexual aggregation of single-celled organisms in suspension to form aggregates of many cells known as flocs." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "ISBN:0721662544" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003823 ; - owl:annotatedTarget "Binding to an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "PMID:20404130" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003682 ; - owl:annotatedTarget "Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005496 ; - owl:annotatedTarget "Binding to a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006807 ; - owl:annotatedTarget "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008144 ; - owl:annotatedTarget "Binding to a drug, a naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism;typically used in the diagnosis, prevention, or treatment of disease." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009308 ; - owl:annotatedTarget "The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042303 ; - owl:annotatedTarget "The periodic casting off and regeneration of an outer covering of cuticle, feathers, hair, horns, skin, etc." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042440 ; - owl:annotatedTarget "The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042886 ; - owl:annotatedTarget "The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043178 ; - owl:annotatedTarget "Binding to an alcohol, any of a class of alkyl compounds containing a hydroxyl group." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009536 ; - owl:annotatedTarget "Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0721662544" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005549 ; - owl:annotatedTarget "Binding to an odorant, any substance capable of stimulating the sense of smell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0721662544" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042600 ; - owl:annotatedTarget "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0787650153" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042180 ; - owl:annotatedTarget "The chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms, as carried out by individual cells. The general formula for a ketone is RCOR, where R and R are alkyl or aryl groups." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "ISBN:0815332181" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:10333591" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043033 ; - owl:annotatedTarget "A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram-negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:10631934" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042824 ; - owl:annotatedTarget "A large, multisubunit complex which consists of the MHC class I-beta 2 microglobulin dimer, the transporter associated with antigen presentation (TAP), tapasin (an MHC-encoded membrane protein), the chaperone calreticulin and the thiol oxidoreductase ERp57. Functions in the assembly of peptides with newly synthesized MHC class I molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:10842354" ; - oboInOwl:hasDbXref "http://www.sdbonline.org/fly/newgene/laminna1.htm" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043256 ; - owl:annotatedTarget "A large, extracellular glycoprotein complex composed of three different polypeptide chains, alpha, beta and gamma. Provides an integral part of the structural scaffolding of basement membranes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:11197234" ; - oboInOwl:hasDbXref "PMID:11293569" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042566 ; - owl:annotatedTarget "A spherical, membrane-bounded organelle found in some anaerobic protozoa, which participates in ATP and molecular hydrogen formation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:12045093" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042575 ; - owl:annotatedTarget "A protein complex that possesses DNA polymerase activity and is involved in template directed synthesis of DNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:24486374" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043364 ; - owl:annotatedTarget "Catalyzes the activation of an enzyme by generating an organic free radical on a glycine residue via a homolytic cleavage of S-adenosyl-L-methionine (SAM)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:24904644" ; - oboInOwl:hasDbXref "PMID:9851972" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043527 ; - owl:annotatedTarget "A multimeric protein complex involved in the methylation of specific nucleotides in tRNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:9914479" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043230 ; - owl:annotatedTarget "Organized structure of distinctive morphology and function, occurring outside the cell. Includes, for example, extracellular membrane vesicles (EMVs) and the cellulosomes of anaerobic bacteria and fungi." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "PMID:9925580" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042620 ; - owl:annotatedTarget "The chemical reactions and pathways involving poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "Wikipedia:Alkane" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043446 ; - owl:annotatedTarget "The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "Wikipedia:Alkene" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043449 ; - owl:annotatedTarget "The chemical reactions and pathways involving an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "http://www.cogsci.princeton.edu/~wn/" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042995 ; - owl:annotatedTarget "A prolongation or process extending from a cell, e.g. a flagellum or axon." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - oboInOwl:hasDbXref "http://www.cogsci.princeton.edu/~wn/" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043005 ; - owl:annotatedTarget "A prolongation or process extending from a nerve cell, e.g. an axon or dendrite." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003676 ; - owl:annotatedTarget "Binding to a nucleic acid." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0004386 ; - owl:annotatedTarget "Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005667 ; - owl:annotatedTarget "A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006091 ; - owl:annotatedTarget "The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008023 ; - owl:annotatedTarget "Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008655 ; - owl:annotatedTarget "Any process that generates a pyrimidine-containing compound, a nucleobase, nucleoside, nucleotide or nucleic acid that contains a pyrimidine base, from derivatives of them without de novo synthesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016942 ; - owl:annotatedTarget "A complex of proteins which includes the insulin-like growth factor (IGF) and a number of IGF-binding proteins. The complex plays a role in growth and development." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019213 ; - owl:annotatedTarget "Catalysis of the hydrolysis of an acetyl group or groups from a substrate molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019239 ; - owl:annotatedTarget "Catalysis of the removal of an amino group from a substrate, producing a substituted or nonsubstituted ammonia (NH3/NH2R)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019825 ; - owl:annotatedTarget "Binding to oxygen (O2)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019840 ; - owl:annotatedTarget "Binding to an isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042133 ; - owl:annotatedTarget "The chemical reactions and pathways involving neurotransmitters, any of a group of substances that are released on excitation from the axon terminal of a presynaptic neuron of the central or peripheral nervous system and travel across the synaptic cleft to either excite or inhibit the target cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042277 ; - owl:annotatedTarget "Binding to a peptide, an organic compound comprising two or more amino acids linked by peptide bonds." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042445 ; - owl:annotatedTarget "The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042562 ; - owl:annotatedTarget "Binding to an hormone, a naturally occurring substance secreted by specialized cells that affect the metabolism or behavior of cells possessing functional receptors for the hormone. Hormones may be produced by the same, or different, cell as express the receptor." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043101 ; - owl:annotatedTarget "Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043163 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell envelope, everything external to, but not including, the cytoplasmic membrane of bacteria, encompassing the periplasmic space, cell wall, and outer membrane if present." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043167 ; - owl:annotatedTarget "Binding to an ion, a charged atoms or groups of atoms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043176 ; - owl:annotatedTarget "Binding to an amine, a weakly basic organic compound that contains an amino or a substituted amino group." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043473 ; - owl:annotatedTarget "The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043511 ; - owl:annotatedTarget "Heterodimeric hormone composed of an inhibin alpha subunit complexed with either an inhibin beta-A subunit, to form inhibin A, or an inhibin beta-B subunit, to form inhibin B." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044255 ; - owl:annotatedTarget "The chemical reactions and pathways involving lipids, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044423 ; - owl:annotatedTarget "Any constituent part of a virion, a complete fully infectious extracellular virus particle." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0044464 ; - owl:annotatedTarget "OBSOLETE. Any constituent part of a cell, the basic structural and functional unit of all organisms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051704 ; - owl:annotatedTarget "A biological process which involves another organism of the same or different species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jl" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0065003 ; - owl:annotatedTarget "The aggregation, arrangement and bonding together of a set of macromolecules to form a protein-containing complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jp" ; - oboInOwl:hasDbXref "ISBN:1555812090" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032196 ; - owl:annotatedTarget "Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:js" ; - oboInOwl:hasDbXref "PMID:10498708" ; - oboInOwl:hasDbXref "PMID:11844753" ; - oboInOwl:hasDbXref "PMID:12923081" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031469 ; - owl:annotatedTarget "An organelle found in bacteria consisting of a proteinaceous coat containing metabolic enzymes whose purpose is the sequestration or concentration of metabolites and which has the appearance of a polygonal granule by electron microscopy." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:jsg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051540 ; - owl:annotatedTarget "Binding to a cluster of atoms including both metal ions and nonmetal atoms, usually sulfur and oxygen. Examples include iron-sulfur clusters and nickel-iron-sulfur clusters." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:kmv" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046536 ; - owl:annotatedTarget "A protein or protein-RNA complex that localizes to one or more of the sex chromosome(s), where it acts to normalize transcription between different sexes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0879695897" ; - oboInOwl:hasDbXref "PMID:17284456" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005732 ; - owl:annotatedTarget "A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0879695897" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030532 ; - owl:annotatedTarget "A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0000375 ; - owl:annotatedTarget "RNA splicing factor activity, transesterification mechanism" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0000375 ; - owl:annotatedTarget "pre-mRNA splicing factor activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mlg" ; - oboInOwl:hasDbXref "ISBN:0815316208" ; - oboInOwl:hasDbXref "PMID:28876829" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030112 ; - owl:annotatedTarget "A carbohydrate rich layer at the outermost periphery of a cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:mlg" ; - oboInOwl:hasDbXref "PMID:10607620" ; - oboInOwl:hasDbXref "PMID:15716452" ; - oboInOwl:hasDbXref "PMID:16497924" ; - oboInOwl:hasDbXref "PMID:16630813" ; - oboInOwl:hasDbXref "PMID:8288518" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009372 ; - owl:annotatedTarget "The cell-cell signaling process in which single-celled organisms carry out coordinated responses by monitoring their own population density, and often also that of other microbes, by producing small, diffusible, signal molecules, detecting the concentration of these molecules, and triggering a signal transduction pathway when a certain threshold is reached. Quorum sensing can occur amongst microbial communities in the environment or within host organisms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "GOC:vesicles" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_1990904 ; - owl:annotatedTarget "A macromolecular complex that contains both RNA and protein molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "PMID:11060033" ; - oboInOwl:hasDbXref "PMID:11979277" ; - oboInOwl:hasDbXref "PMID:16983072" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000347 ; - owl:annotatedTarget "The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm. In S. cerevisiae, it is composed of four subunits: Hpr1p, Tho2p, Thp1p, and Mft1p, while the human complex is composed of 7 subunits." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "PMID:11602261" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000307 ; - owl:annotatedTarget "Cyclin-dependent protein kinases (CDKs) are enzyme complexes that contain a kinase catalytic subunit associated with a regulatory cyclin partner." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - oboInOwl:hasDbXref "PMID:11979277" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000346 ; - owl:annotatedTarget "The transcription export (TREX) complex couples transcription elongation by RNA polymerase II to mRNA export. The complex associates with the polymerase and travels with it along the length of the transcribed gene. TREX is composed of the THO transcription elongation complex as well as other proteins that couple THO to mRNA export proteins. The TREX complex is known to be found in a wide range of eukaryotes, including S. cerevisiae and metazoans." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000375 ; - owl:annotatedTarget "Splicing of RNA via a series of two transesterification reactions." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:krc" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0045177 ; - owl:annotatedTarget "apical region of cell" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:lr" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030076 ; - owl:annotatedTarget "A protein-pigment complex that may be closely or peripherally associated to photosynthetic reaction centers that participate in harvesting and transferring radiant energy to the reaction center." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ma" ; - oboInOwl:hasDbXref "PMID:26404467" ; - oboInOwl:hasDbXref "Wikipedia:Ribosome_biogenesis" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042254 ; - owl:annotatedTarget "A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006629 ; - owl:annotatedTarget "The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009116 ; - owl:annotatedTarget "The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009117 ; - owl:annotatedTarget "The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:ma" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019538 ; - owl:annotatedTarget "The chemical reactions and pathways involving a protein. Includes protein modification." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:mb" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008283 ; - owl:annotatedTarget "The multiplication or reproduction of cells, resulting in the expansion of a cell population." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:mlg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015976 ; - owl:annotatedTarget "A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:ns" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031049 ; - owl:annotatedTarget "The DNA metabolic process in which micronuclear-limited sequences, internal eliminated sequences (IES) and breakage eliminated sequences (BES) are removed from the developing macronucleus (anlage) of a ciliate." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:pr" ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030175 ; - owl:annotatedTarget "Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:pz" ; - oboInOwl:hasDbXref "GOC:vesicles" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031982 ; - owl:annotatedTarget "Any small, fluid-filled, spherical organelle enclosed by membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:rn" ; - oboInOwl:hasDbXref "PMID:10806345" ; - oboInOwl:hasDbXref "PMID:10884686" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0019787 ; - owl:annotatedTarget "Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:txnOH" ; - oboInOwl:hasDbXref "PMID:15020047" ; - oboInOwl:hasDbXref "PMID:18280161" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006354 ; - owl:annotatedTarget "The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vk" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "hydroxylase activity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "PMID:11242086" ; - oboInOwl:hasDbXref "PMID:29716949" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003774 ; - owl:annotatedTarget "Generation of force resulting in movement, for example along a microfilament or microtubule, or in torque resulting in membrane scission or rotation of a flagellum. The energy required is obtained either from the hydrolysis of a nucleoside triphosphate or by an electrochemical proton gradient (proton-motive force)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005198 ; - owl:annotatedTarget "The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030894 ; - owl:annotatedTarget "A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005975 ; - owl:annotatedTarget "The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031406 ; - owl:annotatedTarget "Binding to a carboxylic acid, an organic acid containing one or more carboxyl (COOH) groups or anions (COO-)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - oboInOwl:hasDbXref "PMID:16959967" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005856 ; - owl:annotatedTarget "Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000166 ; - owl:annotatedTarget "Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005813 ; - owl:annotatedTarget "A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0306444747" ; - oboInOwl:hasDbXref "ISBN:0471394831" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015949 ; - owl:annotatedTarget "The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0716743663" ; - oboInOwl:hasDbXref "PMID:16691483" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016469 ; - owl:annotatedTarget "A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006323 ; - owl:annotatedTarget "Any process in which DNA and associated proteins are formed into a compact, orderly structure." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045177 ; - owl:annotatedTarget "The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045178 ; - owl:annotatedTarget "The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "MetaCyc:GCVMULTI-CPLX" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005960 ; - owl:annotatedTarget "A protein complex that catalyzes the reversible oxidation of glycine. In E. coli, it has four components: dihydrolipoamide dehydrogenase, glycine dehydrogenase (decarboxylating), lipoyl-GcvH-protein and aminomethyltransferase, also known as L, P, H, and T." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:10357856" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005849 ; - owl:annotatedTarget "Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:10611976" ; - oboInOwl:hasDbXref "PMID:15473838" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030119 ; - owl:annotatedTarget "Any of several heterotetrameric complexes that link clathrin (or another coat-forming molecule, as hypothesized for AP-3 and AP-4) to a membrane surface; they are found on coated pits and coated vesicles, and mediate sorting of cargo proteins into vesicles. Each AP complex contains two large (a beta and one of either an alpha, gamma, delta, or epsilon) subunits (110-130 kDa), a medium (mu) subunit (approximately 50 kDa), and a small (sigma) subunit (15-20 kDa)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:10611978" ; - oboInOwl:hasDbXref "PMID:18166647" ; - oboInOwl:hasDbXref "PMID:8612571" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0071256 ; - owl:annotatedTarget "A protein complex that constitutes a specific site of protein translocation across the endoplasmic reticulum, which involves the signal recognition particle receptor. The complex contains a core heterotrimer of alpha, beta and gamma subunits, and may contain additional proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:11352464" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009368 ; - owl:annotatedTarget "A protein complex comprised of members of the ClpX, ClpC, ClpD, ClpP or ClpR protein families. ClpPs are the proteolytic subunit of active complexes, and ClpA and ClpX form the regulatory subunits. Enzymatically active and inactive complexes can form." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:12045094" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030677 ; - owl:annotatedTarget "A ribonucleoprotein complex that catalyzes cleavage of the leader sequence of precursor tRNAs (pre-tRNAs), generating the mature 5' end of tRNAs." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:14519123" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032476 ; - owl:annotatedTarget "A complex that possesses di-trans,poly-cis-decaprenylcistransferase activity; involved in ubiquinone biosynthesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:14656431" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016472 ; - owl:annotatedTarget "A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of sodium ions across a membrane. The complex comprises a membrane sector (F0 or V0) that carries out ion transport and a cytoplasmic compartment sector (F1 or V1) that catalyzes ATP synthesis or hydrolysis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:14704433" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031332 ; - owl:annotatedTarget "Any protein complex that mediates the effects of small interfering RNAs on gene expression. Most known examples contain one or more members of the Argonaute family of proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - oboInOwl:hasDbXref "PMID:15385632" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031105 ; - owl:annotatedTarget "A protein complex containing septins. Typically, these complexes contain multiple septins and are oligomeric." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000280 ; - owl:annotatedTarget "The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005891 ; - owl:annotatedTarget "A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006112 ; - owl:annotatedTarget "The chemical reactions and pathways by which a cell derives energy from stored compounds such as fats or glycogen." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006260 ; - owl:annotatedTarget "The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006396 ; - owl:annotatedTarget "Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006996 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007031 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007033 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007154 ; - owl:annotatedTarget "Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008907 ; - owl:annotatedTarget "Catalysis of the integration of one DNA segment into another." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009057 ; - owl:annotatedTarget "The chemical reactions and pathways resulting in the breakdown of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009059 ; - owl:annotatedTarget "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009657 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015074 ; - owl:annotatedTarget "The process in which a DNA segment is incorporated into another, usually larger, DNA molecule such as a chromosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015935 ; - owl:annotatedTarget "The smaller of the two subunits of a ribosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016050 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0017053 ; - owl:annotatedTarget "A protein complex that possesses activity that prevents or downregulates transcription." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030246 ; - owl:annotatedTarget "Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030427 ; - owl:annotatedTarget "Any part of a cell where non-isotropic growth takes place." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030880 ; - owl:annotatedTarget "Any complex that possesses RNA polymerase activity; generally comprises a catalytic subunit and one or more additional subunits." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mah" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030964 ; - owl:annotatedTarget "An integral membrane complex that possesses NADH oxidoreductase activity. The complex is one of the components of the electron transport chain. 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- owl:annotatedTarget "A crystalline protein layer surrounding some bacteria." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mlg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043094 ; - owl:annotatedTarget "Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mlg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048492 ; - owl:annotatedTarget "A complex containing either both large and small subunits or just small subunits which carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mlg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048500 ; - owl:annotatedTarget "A complex of protein and RNA which facilitates translocation of proteins across membranes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_MIT_16mar07" ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0060090 ; - owl:annotatedTarget "The binding activity of a molecule that brings together two or more molecules through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_apoptosis" ; - oboInOwl:hasDbXref "PMID:12083798" ; - oboInOwl:hasDbXref "PMID:16624291" ; - oboInOwl:hasDbXref "Wikipedia:Bleb_(cell_biology)" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032059 ; - owl:annotatedTarget "A cell extension caused by localized decoupling of the cytoskeleton from the plasma membrane and characterized by rapid formation, rounded shape, and scarcity of organelles within the protrusion. Blebs are formed during apoptosis and other cellular processes, including cell locomotion, cell division, and as a result of physical or chemical stresses." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_apoptosis" ; - oboInOwl:hasDbXref "PMID:12628743" ; - oboInOwl:hasDbXref "PMID:12655293" ; - oboInOwl:hasDbXref "PMID:8521815" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031264 ; - owl:annotatedTarget "A protein complex formed by the association of signaling proteins with a death receptor upon ligand binding. The complex includes procaspases and death domain-containing proteins in addition to the ligand-bound receptor, and may control the activation of caspases 8 and 10." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_chebi_dec09" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0009057 ; - owl:annotatedTarget "biopolymer catabolic process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_chebi_dec09" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0009059 ; - owl:annotatedTarget "biopolymer biosynthetic process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_chebi_dec09" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0043170 ; - owl:annotatedTarget "biopolymer metabolic process" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_electron_transport" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0022900 ; - owl:annotatedTarget "A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_heart" ; - oboInOwl:hasDbXref "ISBN:0192800825" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008015 ; - owl:annotatedTarget "The flow of blood through the body of an animal, enabling the transport of nutrients to the tissues and the removal of waste products." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_muscle" ; - oboInOwl:hasDbXref "PMID:11181628" ; - oboInOwl:hasDbXref "PMID:11449884" ; - oboInOwl:hasDbXref "PMID:12605307" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0043500 ; - owl:annotatedTarget "A process in which muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005773 ; - owl:annotatedTarget "A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - oboInOwl:hasDbXref "PMID:14617809" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031205 ; - owl:annotatedTarget "An endoplasmic reticulum membrane-associated complex involved in the translocation of proteins that are targeted to the ER. In yeast, this complex consists of two subcomplexes, namely, the Sec61 complex and the Sec62/Sec63 complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0055044 ; - owl:annotatedTarget "The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - owl:annotatedProperty oboInOwl:hasBroadSynonym ; - owl:annotatedSource obo1:GO_0043591 ; - owl:annotatedTarget "spore wall" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:mtg_sensu" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0043591 ; - owl:annotatedTarget "peptidoglycan-based spore wall" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pamgo_curators" ; - oboInOwl:hasDbXref "PMID:28496159" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009289 ; - owl:annotatedTarget "A proteinaceous hair-like appendage on the surface of bacteria ranging from 2-8 nm in diameter." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pde" ; - oboInOwl:hasDbXref "GOC:sgd_curators" ; - oboInOwl:hasDbXref "ISBN:0716746840" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005835 ; - owl:annotatedTarget "A multienzyme complex that catalyses the synthesis of fatty acids from acetyl CoA." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pdt" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1337158144" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005575 ; - owl:annotatedTarget "A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pdt" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003674 ; - owl:annotatedTarget "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pdt" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0008150 ; - owl:annotatedTarget "A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031252 ; - owl:annotatedTarget "The area of a motile cell closest to the direction of movement." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pg" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031254 ; - owl:annotatedTarget "The area of a motile cell opposite to the direction of movement." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pr" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0018904 ; - owl:annotatedTarget "The chemical reactions and pathways involving organic ethers, any anhydride of the general formula R1-O-R2, formed between two identical or nonidentical organic hydroxy compounds." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:pr" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0032059 ; - owl:annotatedTarget "plasma membrane bleb" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:rb" ; - oboInOwl:hasDbXref "Wikipedia:Proteasome" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000502 ; - owl:annotatedTarget "A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:rc" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048753 ; - owl:annotatedTarget "A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a pigment granule." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:sgd_curators" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005933 ; - owl:annotatedTarget "A protuberance from a cell of an organism that reproduces by budding, which will grow larger and become a separate daughter cell after nuclear division, cytokinesis, and cell wall formation (when appropriate). The daughter cell may completely separate from the mother cell, or the mother and daughter cells may remain associated." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:sl" ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005903 ; - owl:annotatedTarget "The dense covering of microvilli on the apical surface of an epithelial cell in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:sm" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0010118 ; - owl:annotatedTarget "The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:sm" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0010191 ; - owl:annotatedTarget "The chemical reactions and pathways involving mucilage, a gelatinous substance secreted by plants." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:tb" ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0051641 ; - owl:annotatedTarget "A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:tb" ; - oboInOwl:hasDbXref "PMID:9680965" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030929 ; - owl:annotatedTarget "Complex that possesses ADPG pyrophosphorylase activity. In all organisms where it has been found, the complex is a tetramer. In bacteria, it is a homotetramer. In plants, the complex is a heterotetramer composed small and large subunits." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:tb" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009914 ; - owl:annotatedTarget "The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:txnOH" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0006351 ; - owl:annotatedTarget "transcription, DNA-dependent" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:txnOH" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0006354 ; - owl:annotatedTarget "DNA-dependent transcription, elongation" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:vw" ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0003824 ; - owl:annotatedTarget "Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "GOC:vw" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0031386 ; - owl:annotatedTarget "covalent modifier" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0124325653" ; - oboInOwl:hasDbXref "PMID:9450971" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0001534 ; - owl:annotatedTarget "Protein complex that links the outer microtubule doublet of the ciliary or flagellum axoneme with the sheath that surrounds the central pair of microtubules. Composed of a stalk that attaches to each doublet microtubule and a globular structure (spoke head) that projects toward the central pair of microtubules." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0192800981" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030431 ; - owl:annotatedTarget "Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0192801023" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0007588 ; - owl:annotatedTarget "The elimination by an organism of the waste products that arise as a result of metabolic activity. These products include water, carbon dioxide (CO2), and nitrogenous compounds." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "ISBN:0471331309" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006119 ; - owl:annotatedTarget "The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1038025871" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005844 ; - owl:annotatedTarget "A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - oboInOwl:hasDbXref "PMID:19696797" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005768 ; - owl:annotatedTarget "A vacuole to which materials ingested by endocytosis are delivered." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0004133 ; - owl:annotatedTarget "Catalysis of the cleavage of branch points in branched glycogen polymers." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005730 ; - owl:annotatedTarget "A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005783 ; - owl:annotatedTarget "The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005794 ; - owl:annotatedTarget "A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005840 ; - owl:annotatedTarget "An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006066 ; - owl:annotatedTarget "The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006082 ; - owl:annotatedTarget "The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006259 ; - owl:annotatedTarget "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006520 ; - owl:annotatedTarget "The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006869 ; - owl:annotatedTarget "The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006949 ; - owl:annotatedTarget "The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009055 ; - owl:annotatedTarget "Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009225 ; - owl:annotatedTarget "The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015849 ; - owl:annotatedTarget "The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016070 ; - owl:annotatedTarget "The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016209 ; - owl:annotatedTarget "Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016740 ; - owl:annotatedTarget "Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016787 ; - owl:annotatedTarget "Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016853 ; - owl:annotatedTarget "Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0018942 ; - owl:annotatedTarget "The chemical reactions and pathways involving organometals, any metal-containing organic compound, especially one in which the metal atom is linked directly to one of more carbon atoms." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031143 ; - owl:annotatedTarget "A temporary protrusion or retractile process of a cell, associated with flowing movements of the protoplasm, and serving for locomotion and feeding." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042165 ; - owl:annotatedTarget "Binding to a neurotransmitter, any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042579 ; - owl:annotatedTarget "Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0042810 ; - owl:annotatedTarget "The chemical reactions and pathways involving pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046483 ; - owl:annotatedTarget "The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046490 ; - owl:annotatedTarget "The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0046950 ; - owl:annotatedTarget "The chemical reactions and pathways involving ketone bodies, any one of the three substances: acetoacetate, D-3-hydroxybutyrate (beta-hydroxybutyrate) or acetone, as carried out by individual cells. Although 3-hydroxybutyrate is not a ketone, it is classed as a ketone body because it exists in an equilibrium with acetoacetate. Ketone bodies may accumulate in excessive amounts in the body in starvation, diabetes mellitus or in other defects of carbohydrate metabolism." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198506732" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050817 ; - owl:annotatedTarget "The process in which a fluid solution, or part of it, changes into a solid or semisolid mass." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005643 ; - owl:annotatedTarget "A protein complex providing a discrete opening in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005694 ; - owl:annotatedTarget "A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005737 ; - owl:annotatedTarget "The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005976 ; - owl:annotatedTarget "The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0009975 ; - owl:annotatedTarget "Catalysis of a ring closure reaction." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0015979 ; - owl:annotatedTarget "The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016829 ; - owl:annotatedTarget "Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045273 ; - owl:annotatedTarget "A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0198547684" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045277 ; - owl:annotatedTarget "A part of the respiratory chain, containing the 13 polypeptide subunits of cytochrome c oxidase, including cytochrome a and cytochrome a3. Catalyzes the oxidation of reduced cytochrome c by dioxygen (O2)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0716720094" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045254 ; - owl:annotatedTarget "Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0721662544" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0050886 ; - owl:annotatedTarget "The process that involves the secretion of or response to endocrine hormones. An endocrine hormone is a hormone released into the circulatory system." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005902 ; - owl:annotatedTarget "Thin cylindrical membrane-covered projections on the surface of an animal cell containing a core bundle of actin filaments. Present in especially large numbers on the absorptive surface of intestinal cells." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006266 ; - owl:annotatedTarget "The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0815316194" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030496 ; - owl:annotatedTarget "A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "ISBN:0877799148" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0032179 ; - owl:annotatedTarget "The slender tubular outgrowth first produced by most spores in germination." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "MetaCyc:CPLX66-42" ; - oboInOwl:hasDbXref "PMID:10848975" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045252 ; - owl:annotatedTarget "A complex of multiple copies of three enzymatic components: oxoglutarate dehydrogenase (lipoamide) ; EC:1.2.4.2 (E1), dihydrolipoamide S-succinyltransferase ; EC:2.3.1.61 (E2) and dihydrolipoamide dehydrogenase ; EC:1.8.1.4 (E3); catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and carbon dioxide (CO2)." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:nlx_subcell_100315" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0005575 ; - owl:annotatedTarget "subcellular entity" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1038025871" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0005844 ; - owl:annotatedTarget "polyribosome" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1139385046" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005840 ; - owl:annotatedTarget "free ribosome" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1291545653" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0005840 ; - owl:annotatedTarget "membrane bound ribosome" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1311109124" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0045202 ; - owl:annotatedTarget "electrotonic synapse" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao1506103497" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0045202 ; - owl:annotatedTarget "mixed synapse" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao250931889" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0043005 ; - owl:annotatedTarget "neuron protrusion" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao628508602" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0044464 ; - owl:annotatedTarget "cellular subcomponent" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "NIF_Subcellular:sao671419673" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0005902 ; - owl:annotatedTarget "microvilli" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:10367889" ; - oboInOwl:hasDbXref "PMID:10675901" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0035230 ; - owl:annotatedTarget "A long, thin, polarized cell projection that contains actin and can extend for distances many times the diameter of the cell. Cytonemes represent extensions of cell cytoplasm and typically have a diameter of approximately 0.2um." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:10567516" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030684 ; - owl:annotatedTarget "Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:10689163" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0000128 ; - owl:annotatedTarget "co-flocculation" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:10915862" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000109 ; - owl:annotatedTarget "Any complex formed of proteins that act in nucleotide-excision repair." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11207366" ; - oboInOwl:hasDbXref "PMID:12374758" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0048476 ; - owl:annotatedTarget "An endodeoxyribonuclease complex that resolves the 4-way DNA intermediates of a Holliday junction into two separate duplex DNA molecules. Can be branch-migration associated." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11207366" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0048476 ; - owl:annotatedTarget "resolvasome" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11325545" ; - oboInOwl:hasDbXref "PMID:12003948" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0033099 ; - owl:annotatedTarget "A membrane-bounded extension of the cell, originally characterized in Mycoplasma species, that contains an electron-dense core that is part of the cytoskeleton and is oriented lengthwise and ends distally in a bulbous knob (terminal button). Required for adherence to host cells and involved in gliding motility and cell division." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11563486" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0006281 ; - owl:annotatedTarget "The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11564867" ; - oboInOwl:hasDbXref "PMID:12139607" ; - oboInOwl:hasDbXref "PMID:24316715" ; - oboInOwl:hasDbXref "http://www.ejbiotechnology.info/content/vol1/issue1/full/4/" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045293 ; - owl:annotatedTarget "A protein complex that posttranscriptionally catalyzes insertion, deletion or substitution of nucleotides at multiple sites within nascent mRNA transcripts to produce mature mRNAs in eukaryotes." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11693916" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0000128 ; - owl:annotatedTarget "coflocculation via lectin-mannose interaction" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11739376" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016530 ; - owl:annotatedTarget "Binding to and delivering metal ions to a target protein." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:11884619" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005697 ; - owl:annotatedTarget "Telomerase is a ribonucleoprotein enzyme complex, with a minimal catalytic core composed of a catalytic reverse transcriptase subunit and an RNA subunit that provides the template for telomeric DNA addition. In vivo, the holoenzyme complex often contains additional subunits." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:12145219" ; - owl:annotatedProperty oboInOwl:hasNarrowSynonym ; - owl:annotatedSource obo1:GO_0000109 ; - owl:annotatedTarget "UvrB-UvrC complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:12446671" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0030689 ; - owl:annotatedTarget "Any of several heterodimers containing one or two Noc proteins, associated with preribosomal complexes; involved in ribosome biogenesis." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:1322202" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031094 ; - owl:annotatedTarget "A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:14614842" ; - oboInOwl:hasDbXref "PMID:14646196" ; - oboInOwl:hasDbXref "PMID:16172520" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0005663 ; - owl:annotatedTarget "A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:14734532" ; - oboInOwl:hasDbXref "PMID:14998522" ; - oboInOwl:hasDbXref "PMID:9632790" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000133 ; - owl:annotatedTarget "Protein complex that plays a role in determining cell polarity by directing the localized assembly of actin filaments at polarization sites; in Saccharomyces the polarisome includes Bni1p, Spa2p, Pea2p, and Bud6p." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:15102850" ; - oboInOwl:hasDbXref "PMID:15261680" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031082 ; - owl:annotatedTarget "Any of several protein complexes required for the biogenesis of specialized organelles of the endosomal-lysosomal system, such as melanosomes, platelet dense granules, and other related organelles; acronym for biogenesis of lysosomal-related organelles complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:15117830" ; - oboInOwl:hasDbXref "PMID:16710609" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0016010 ; - owl:annotatedTarget "A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:15738951" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0020022 ; - owl:annotatedTarget "metachromatic granule" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:15738951" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0020022 ; - owl:annotatedTarget "volutin granule" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:15738951" ; - owl:annotatedProperty oboInOwl:hasRelatedSynonym ; - owl:annotatedSource obo1:GO_0020022 ; - owl:annotatedTarget "polyphosphate vacuole" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:16228398" ; - oboInOwl:hasDbXref "PMID:16352458" ; - oboInOwl:hasDbXref "PMID:17200733" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045275 ; - owl:annotatedTarget "A protein complex that transfers electrons from ubiquinol to cytochrome c and translocates two protons across a membrane. The complex contains a core structure of three catalytic subunits: cytochrome b, the Rieske iron sulfur protein (ISP), and cytochrome c1, which are arranged in an integral membrane-bound dimeric complex; additional subunits are present, and vary among different species." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:17174896" ; - oboInOwl:hasDbXref "PMID:20531386" ; - oboInOwl:hasDbXref "PMID:26726035" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0000178 ; - owl:annotatedTarget "A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:2170409" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0010316 ; - owl:annotatedTarget "Heterodimeric complex that catalyzes the pyrophosphate-dependent phosphorylation of D-fructose 6-phosphate into D-fructose 1,6-bisphosphate." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:25898167" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0031082 ; - owl:annotatedTarget "BLOC-1 related complex" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:9372908" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0031519 ; - owl:annotatedTarget "A chromatin-associated multiprotein complex containing Polycomb Group proteins. In Drosophila, Polycomb group proteins are involved in the long-term maintenance of gene repression, and PcG protein complexes associate with Polycomb group response elements (PREs) in target genes to regulate higher-order chromatin structure." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "PMID:9395502" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0045253 ; - owl:annotatedTarget "A complex of a regulatory and catalytic subunit that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "Wikipedia:Membrane_nanotube" ; - owl:annotatedProperty oboInOwl:hasExactSynonym ; - owl:annotatedSource obo1:GO_0035230 ; - owl:annotatedTarget "membrane nanotube" ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "Wikipedia:Phytoalexin" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0052314 ; - owl:annotatedTarget "The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response." ; -]. -[ - a owl:Axiom ; - oboInOwl:hasDbXref "http://umbbd.ahc.umn.edu/pth/pth_map.html" ; - owl:annotatedProperty obo1:IAO_0000115 ; - owl:annotatedSource obo1:GO_0035273 ; - owl:annotatedTarget "Binding to a phthalate, any ester or salt of phthalic acid." ; -]. -[ - a owl:Axiom ; - rdfs:label "4Fe-4S cluster assembles on NUBP2:NUBP1 scaffold" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0009055 ; - owl:annotatedTarget "Reactome:R-HSA-2564826" ; -]. -[ - a owl:Axiom ; - rdfs:label "AADAC deacetylates PHEN" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0019213 ; - owl:annotatedTarget "Reactome:R-HSA-5689000" ; -]. -[ - a owl:Axiom ; - rdfs:label "ABHD14B hydrolyses PNPB" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016787 ; - owl:annotatedTarget "Reactome:R-HSA-5695964" ; -]. -[ - a owl:Axiom ; - rdfs:label "ABHD4 hydrolyses NAPE" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016787 ; - owl:annotatedTarget "Reactome:R-HSA-5694583" ; -]. -[ - a owl:Axiom ; - rdfs:label "ATG16L1 complex transfers LC3 from ATG3 to PE" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0019787 ; - owl:annotatedTarget "Reactome:R-HSA-5678490" ; -]. -[ - a owl:Axiom ; - rdfs:label "Acetaminophen oxidised to N-acetylbenzoquinoneimine (NAPQI)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76397" ; -]. -[ - a owl:Axiom ; - rdfs:label "An unknown protease degrades ACACA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-3065958" ; -]. -[ - a owl:Axiom ; - rdfs:label "An unknown protease degrades ACACB" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-4167501" ; -]. -[ - a owl:Axiom ; - rdfs:label "An unknown protease degrades hCBXs" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-3065959" ; -]. -[ - a owl:Axiom ; - rdfs:label "Arachidonic acid is epoxidated to 5,6-EET by CYP(4)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2161890" ; -]. -[ - a owl:Axiom ; - rdfs:label "Arachidonic acid is epoxidated to 8,9/11,12/14,15-EET by CYP(5)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2161899" ; -]. -[ - a owl:Axiom ; - rdfs:label "Arachidonic acid is hydroxylated to 16/17/18-HETE by CYP(1)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2161795" ; -]. -[ - a owl:Axiom ; - rdfs:label "Arachidonic acid is hydroxylated to 19-HETE by CYP(2)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2161814" ; -]. -[ - a owl:Axiom ; - rdfs:label "Arachidonic acid is hydroxylated to 20-HETE by CYP(3)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2161940" ; -]. -[ - a owl:Axiom ; - rdfs:label "BLM mediates dissolution of double Holliday junction" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004386 ; - owl:annotatedTarget "Reactome:R-HSA-5686410" ; -]. -[ - a owl:Axiom ; - rdfs:label "Benzene is hydroxylated to phenol" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76416" ; -]. -[ - a owl:Axiom ; - rdfs:label "CMBL hydrolyses OM to OLMS" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016787 ; - owl:annotatedTarget "Reactome:R-HSA-6786190" ; -]. -[ - a owl:Axiom ; - rdfs:label "CPY4 -oxidises 14(S)-HDHA to MaR-L1" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9027042" ; -]. -[ - a owl:Axiom ; - rdfs:label "CTRC hydrolyses PRSS1" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-5693319" ; -]. -[ - a owl:Axiom ; - rdfs:label "CTSG cleaves CASP1(1-404)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-448678" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP monooxygenates EPA to 18(S)-HpEPE" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9018874" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1, CYP2 hydroxylate (N)PD1 to 22-OH-(N)PD1" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9037761" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1A2 S-demethylates 6MMP" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76386" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1A2 hydroxylates AFB1 to AFM1" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5423678" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1A2, 3A4 oxidise AFB1 to AFNBO" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5423672" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1A2,3A4,3A5,2A13 oxidise AFB1 to AFXBO" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-156526" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP1B1 4-hydroxylates EST17b" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211951" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2A13 oxidises AFM1 to AFM1E" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5423647" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2C18 initiates bioactivation of phenytoin by 4-hydroxylation" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-212004" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2C19 5-hydroxylates omeprazole" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211929" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2C8 inactivates paclitaxel by 6alpha-hydroxylation" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211910" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2C9 inactivates tolbutamide by 4methyl-hydroxylation" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211988" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2E1 oxidises 14(R)-HDHA to 14(R),21(R)-diHDHA and 14(R),21(S)-diHDHA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9027321" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2E1 oxidises 14(S)-HDHA to 14(S),21(R)-diHDHA and 14(S),21(S)-diHDHA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9027302" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2F1 dehydrogenates 3-methylindole" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-212005" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2U1 19-hydroxylates ARA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211960" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP2W1 oxidises INDOL" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211968" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP3A4 can N-demethylate loperamide" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211948" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP3A4,5 hydroxylates AFB1 to AFQ1" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5423664" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP3A4,5 oxidise AFB1 to AFXBO" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-213175" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP3A43 6b-hydroxylates TEST" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211959" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP3A7 can 6beta-hydroxylate testosterone" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211882" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4 -oxidises 14(R)-HDHA to MaR-L2" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9027044" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4A11 12-hydroxylates DDCX" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76466" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4B1 12-hydroxylates ARA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211924" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4F11 16-hydroxylates 3OH-PALM" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211962" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4F12 18-hydroxylates ARA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211904" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4F22 20-hydroxylates TrXA3" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5602295" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4F3 20-hydroxylates LTB4" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-215526" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4F8 19-hydroxylates PGH2" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211919" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYP4V2 omega-hydroxylates DHA to HDoHE" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-6786239" ; -]. -[ - a owl:Axiom ; - rdfs:label "CYPs hydroxylate DHA to 14(R)-HDHA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-9027043" ; -]. -[ - a owl:Axiom ; - rdfs:label "Cyclophosphamide is 4-hydroxylated by CYP2B6" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-211991" ; -]. -[ - a owl:Axiom ; - rdfs:label "DCD(63-110) is processed to DCD(63-109)" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0008233 ; - owl:annotatedTarget "Reactome:R-HSA-6803060" ; -]. -[ - a owl:Axiom ; - rdfs:label "DHI and DHICA polymerise forming eumelanin" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5663050" ; -]. -[ - a owl:Axiom ; - rdfs:label "DMPhOH is hydroxylated to MDMQ10H2 by DMPhOH monooxygenase" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-2162191" ; -]. -[ - a owl:Axiom ; - rdfs:label "Defective CYP1B1 does not 4-hydroxylate EST17b" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5605147" ; -]. -[ - a owl:Axiom ; - rdfs:label "Defective CYP2U1 does not omega-hydroxylate ARA" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5602242" ; -]. -[ - a owl:Axiom ; - rdfs:label "Defective CYP4F22 does not 20-hydroxylate TrXA3" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5602272" ; -]. -[ - a owl:Axiom ; - rdfs:label "Dehalogenation of carbon tetrachloride to form a free radical" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76434" ; -]. -[ - a owl:Axiom ; - rdfs:label "Dehalogenation of the poly-halogenated hydrocarbon Halothane to form the acylhalide Trifluoroacetlychloride and hydrogen bromide" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-76475" ; -]. -[ - a owl:Axiom ; - rdfs:label "Diiodinated tyrosine can be deiodinated" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016491 ; - owl:annotatedTarget "Reactome:R-HSA-209960" ; -]. -[ - a owl:Axiom ; - rdfs:label "Dopa is oxidized to dopaquinone by TYR" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0004497 ; - owl:annotatedTarget "Reactome:R-HSA-5662692" ; -]. -[ - a owl:Axiom ; - rdfs:label "Dopachrome is transformed to DHICA by DCT" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016491 ; - owl:annotatedTarget "Reactome:R-HSA-5662660" ; -]. -[ - a owl:Axiom ; - rdfs:label "ENPPs hydrolyse CoA-SH to PPANT, PAP" ; - owl:annotatedProperty oboInOwl:hasDbXref ; - owl:annotatedSource obo1:GO_0016787 ; - owl:annotatedTarget "Reactome:R-HSA-8938314" ; -]. -[ - a owl:Axiom ; - rdfs:label "ERCC2 and ERCC3 DNA helicases form an open bubble structure in damaged DNA" ; 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