From 18f1e656155ad52ec119d4d9800f9c66f4d8c26d Mon Sep 17 00:00:00 2001
From: Hans van den Heuvel <hans1.vandenheuvel@wur.nl>
Date: Tue, 3 Mar 2020 18:43:55 +0100
Subject: [PATCH] Added possibility to read Tab separated files.
---
Convert-EUProcessingFactorsDB/mcra.py | 18 ++++++++++++++++++
1 file changed, 18 insertions(+)
diff --git a/Convert-EUProcessingFactorsDB/mcra.py b/Convert-EUProcessingFactorsDB/mcra.py
index 1052b05..e29d4ad 100644
--- a/Convert-EUProcessingFactorsDB/mcra.py
+++ b/Convert-EUProcessingFactorsDB/mcra.py
@@ -179,6 +179,13 @@ class DataSheet:
if key not in kwargs:
kwargs[key] = value
self.sheet = pd.read_csv(self.file.path, **kwargs)
+ elif self.file.extension == '.tsv':
+ # Some defaults:
+ default_args = {'comment': '#', 'dtype': str, 'sep': '\t'}
+ for key, value in default_args.items():
+ if key not in kwargs:
+ kwargs[key] = value
+ self.sheet = pd.read_csv(self.file.path, **kwargs)
elif self.file.extension == '.xlsx':
self.sheet = pd.read_excel(self.file.path, **kwargs)
elif self.file.extension == '.md':
@@ -203,6 +210,17 @@ class DataSheet:
self.sheet.to_csv(
path_or_buf=self.file.path,
**kwargs)
+ elif self.file.extension == '.tsv':
+ if self.type is None:
+ self.type = 'pandas'
+ # Some defaults:
+ default_args = {'index': False, 'sep': '\t'}
+ for key, value in default_args.items():
+ if key not in kwargs:
+ kwargs[key] = value
+ self.sheet.to_csv(
+ path_or_buf=self.file.path,
+ **kwargs)
elif self.file.extension == '.xlsx':
if self.type is None:
self.type = 'pandas'
--
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